monomind 1.11.8 → 1.11.10

package/.claude/skills/mastermind/diagnose.md

@@ -164,7 +164,7 @@ if [ -n "$issue_id" ]; then
   echo "ISSUE: $issue_id"
   echo "────────────────────────────────────────────────────────"
   if [ -f "$issuesFile" ]; then
-    jq --arg id "$issue_id" '.issues[] | select(.id == $id)' "$issuesFile" 2>/dev/null \
+    jq --arg id "$issue_id" '(.issues // [])[] | select(.id == $id)' "$issuesFile" 2>/dev/null \
       || echo "  Issue not found: $issue_id"
   fi
 fi
@@ -212,9 +212,9 @@ agentCount=$(jq '.roles | length' "$orgFile")
 echo "Org agents:  $agentCount"
 
 if [ -f "$issuesFile" ]; then
-  openCount=$(jq '[.issues[] | select(.status == "open")] | length' "$issuesFile")
-  inpCount=$(jq '[.issues[] | select(.status == "in_progress")] | length' "$issuesFile")
-  doneCount=$(jq '[.issues[] | select(.status == "done")] | length' "$issuesFile")
+  openCount=$(jq '[(.issues // [])[] | select(.status == "open")] | length' "$issuesFile")
+  inpCount=$(jq '[(.issues // [])[] | select(.status == "in_progress")] | length' "$issuesFile")
+  doneCount=$(jq '[(.issues // [])[] | select(.status == "done")] | length' "$issuesFile")
   echo "Issues:      open=$openCount  in_progress=$inpCount  done=$doneCount"
 fi
 

package/.claude/skills/mastermind/env.md

@@ -57,7 +57,7 @@ echo "LLM PROVIDER"
 echo "────────────"
 ceo_model=$(jq -r '.run_config.ceo_adapter // "claude-sonnet-4-6"' "$orgFile")
 echo "  CEO adapter model:  $ceo_model"
-jq -r '.roles[] | "  \(.id): \(.adapter_config.model // "inherited from CEO")"' "$orgFile" 2>/dev/null
+jq -r '(.roles // [])[] | "  \(.id): \(.adapter_config.model // "inherited from CEO")"' "$orgFile" 2>/dev/null
 echo ""
 
 # API key availability (check env vars, never print values)

package/.claude/skills/mastermind/environments.md

@@ -73,7 +73,7 @@ count=$(jq '.environments | length' "$envFile")
 if [ "$count" -eq 0 ]; then
   echo "  No environments. Use --action create to add one."
 else
-  jq -r --arg def "$defaultEnv" '.environments[] |
+  jq -r --arg def "$defaultEnv" '(.environments // [])[] |
     [
       .id,
       (.kind // "local"),
@@ -116,7 +116,7 @@ jq --arg id "$envId" \
    --arg sref "${secret_ref:-}" \
    --arg wdir "${work_dir:-/tmp/monomind}" \
    --arg ts "$ts" \
-  '.environments = [.environments[] | select(.id != $id)] +
+  '.environments = [(.environments // [])[] | select(.id != $id)] +
    [{"id":$id,"name":$n,"kind":$kind,
      "host":(if $host != "" then $host else null end),
      "port":(if $host != "" then $port else null end),
@@ -135,7 +135,7 @@ echo "Run --action probe --env-id $envId to verify connectivity."
 
 ```bash
 [ -z "$env_id" ] && { echo "ERROR: --env-id required."; exit 1; }
-exists=$(jq --arg id "$env_id" '[.environments[] | select(.id == $id)] | length' "$envFile")
+exists=$(jq --arg id "$env_id" '[(.environments // [])[] | select(.id == $id)] | length' "$envFile")
 [ "$exists" -eq 0 ] && { echo "ERROR: Environment '$env_id' not found."; exit 1; }
 
 tmp="${envFile}.tmp"
@@ -145,7 +145,7 @@ jq --arg id "$env_id" \
    --arg user "${user:-}" \
    --arg sref "${secret_ref:-}" \
    --arg wdir "${work_dir:-}" \
-  '.environments = [.environments[] | if .id == $id then
+  '.environments = [(.environments // [])[] | if .id == $id then
      . *
      (if $host != "" then {"host":$host} else {} end) *
      (if $port > 0 then {"port":$port} else {} end) *
@@ -164,7 +164,7 @@ echo "Updated environment: $env_id"
 [ -z "$env_id" ] && { echo "ERROR: --env-id required."; exit 1; }
 tmp="${envFile}.tmp"
 jq --arg id "$env_id" \
-  '.environments = [.environments[] | select(.id != $id)] |
+  '.environments = [(.environments // [])[] | select(.id != $id)] |
    if .default_env == $id then .default_env = null else . end' \
   "$envFile" > "$tmp" && mv "$tmp" "$envFile"
 echo "Deleted environment: $env_id"
@@ -174,7 +174,7 @@ echo "Deleted environment: $env_id"
 
 ```bash
 [ -z "$env_id" ] && { echo "ERROR: --env-id required."; exit 1; }
-envData=$(jq -r --arg id "$env_id" '.environments[] | select(.id == $id)' "$envFile")
+envData=$(jq -r --arg id "$env_id" '(.environments // [])[] | select(.id == $id)' "$envFile")
 [ -z "$envData" ] && { echo "ERROR: Environment '$env_id' not found."; exit 1; }
 
 kind=$(echo "$envData" | jq -r '.kind')
@@ -212,7 +212,7 @@ esac
 
 tmp="${envFile}.tmp"
 jq --arg id "$env_id" --arg st "$status" --arg ts "$ts" \
-  '.environments = [.environments[] | if .id == $id then .probeStatus = $st | .lastProbe = $ts else . end]' \
+  '.environments = [(.environments // [])[] | if .id == $id then .probeStatus = $st | .lastProbe = $ts else . end]' \
   "$envFile" > "$tmp" && mv "$tmp" "$envFile"
 
 echo "Probe [$env_id]: $status  (checked at $ts)"
@@ -222,7 +222,7 @@ echo "Probe [$env_id]: $status  (checked at $ts)"
 
 ```bash
 [ -z "$env_id" ] && { echo "ERROR: --env-id required."; exit 1; }
-exists=$(jq --arg id "$env_id" '[.environments[] | select(.id == $id)] | length' "$envFile")
+exists=$(jq --arg id "$env_id" '[(.environments // [])[] | select(.id == $id)] | length' "$envFile")
 [ "$exists" -eq 0 ] && { echo "ERROR: Environment '$env_id' not found."; exit 1; }
 
 tmp="${envFile}.tmp"

package/.claude/skills/mastermind/export.md

@@ -34,10 +34,13 @@ This skill is invoked by `mastermind:export` or directly via `/mastermind:export
 | `goals` | `<org>-goals.json` | ✓ |
 | `routines` | `<org>-routines.json` | ✓ |
 | `projects` | `<org>-projects.json` | ✓ |
+| `issues` | `<org>-issues.json` | ✓ |
 | `members` | `<org>-members.json` | ✓ |
 | `adapters` | `<org>-adapters.json` | ✓ |
 | `environments` | `<org>-environments.json` | ✓ |
 | `workspaces` | `<org>-workspaces.json` | ✓ |
+| `threads` | `<org>-threads.json` | ✓ |
+| `budgets` | `<org>-budgets.json` | ✓ |
 | `activity` | `<org>-activity.jsonl` (last 500 events) | ✓ |
 | `secrets-refs` | secret reference names only (NO values) | opt-in |
 
@@ -84,7 +87,7 @@ Show what would be included in an export without writing anything:
 echo "EXPORT PREVIEW — org: $org_name"
 echo "────────────────────────────────────────────────────────"
 
-allSections="config goals routines projects members adapters environments workspaces activity"
+allSections="config goals routines projects issues members adapters environments workspaces threads budgets activity"
 includeSections="${include:-$allSections}"
 
 for section in $allSections; do
@@ -94,10 +97,13 @@ for section in $allSections; do
     goals)       srcFile=".monomind/orgs/${org_name}-goals.json" ;;
     routines)    srcFile=".monomind/orgs/${org_name}-routines.json" ;;
     projects)    srcFile=".monomind/orgs/${org_name}-projects.json" ;;
+    issues)      srcFile=".monomind/orgs/${org_name}-issues.json" ;;
     members)     srcFile=".monomind/orgs/${org_name}-members.json" ;;
     adapters)    srcFile=".monomind/orgs/${org_name}-adapters.json" ;;
     environments) srcFile=".monomind/orgs/${org_name}-environments.json" ;;
     workspaces)  srcFile=".monomind/orgs/${org_name}-workspaces.json" ;;
+    threads)     srcFile=".monomind/orgs/${org_name}-threads.json" ;;
+    budgets)     srcFile=".monomind/orgs/${org_name}-budgets.json" ;;
     activity)    srcFile=".monomind/orgs/${org_name}-activity.jsonl" ;;
     secrets-refs) srcFile=".monomind/orgs/.secrets/${org_name}/" ;;
   esac
@@ -119,7 +125,7 @@ echo "Run with --action export to proceed."
 ```bash
 echo "Exporting org '$org_name'…"
 
-allSections="config goals routines projects members adapters environments workspaces activity"
+allSections="config goals routines projects issues members adapters environments workspaces threads budgets activity"
 includeSections="${include:-$allSections}"
 
 # Build list of files to include
@@ -135,10 +141,13 @@ for section in $allSections; do
     goals)        srcFile=".monomind/orgs/${org_name}-goals.json" ; dstName="${org_name}-goals.json" ;;
     routines)     srcFile=".monomind/orgs/${org_name}-routines.json" ; dstName="${org_name}-routines.json" ;;
     projects)     srcFile=".monomind/orgs/${org_name}-projects.json" ; dstName="${org_name}-projects.json" ;;
+    issues)       srcFile=".monomind/orgs/${org_name}-issues.json" ; dstName="${org_name}-issues.json" ;;
     members)      srcFile=".monomind/orgs/${org_name}-members.json" ; dstName="${org_name}-members.json" ;;
     adapters)     srcFile=".monomind/orgs/${org_name}-adapters.json" ; dstName="${org_name}-adapters.json" ;;
     environments) srcFile=".monomind/orgs/${org_name}-environments.json" ; dstName="${org_name}-environments.json" ;;
     workspaces)   srcFile=".monomind/orgs/${org_name}-workspaces.json" ; dstName="${org_name}-workspaces.json" ;;
+    threads)      srcFile=".monomind/orgs/${org_name}-threads.json" ; dstName="${org_name}-threads.json" ;;
+    budgets)      srcFile=".monomind/orgs/${org_name}-budgets.json" ; dstName="${org_name}-budgets.json" ;;
     activity)     srcFile=".monomind/orgs/${org_name}-activity.jsonl" ; dstName="${org_name}-activity.jsonl" ;;
     secrets-refs)
       # Export ONLY secret reference names — NO values
@@ -154,7 +163,7 @@ for section in $allSections; do
   if [ -f "$srcFile" ]; then
     # For environments: strip key material before including
     if [ "$section" = "environments" ]; then
-      jq '.environments = [.environments[] | del(.key_material,.private_key,.ssh_key,.password)]' \
+      jq '.environments = [(.environments // [])[] | del(.key_material,.private_key,.ssh_key,.password)]' \
         "$srcFile" > "${orgExportDir}/${dstName}"
     elif [ "$section" = "activity" ]; then
       # Only last 500 events

package/.claude/skills/mastermind/goal-detail.md

@@ -53,7 +53,7 @@ orgFile=".monomind/orgs/${org_name}.json"
 goalsFile=".monomind/orgs/${org_name}-goals.json"
 [ ! -f "$goalsFile" ] && { echo "ERROR: No goals file for org '$org_name'. Create goals via /mastermind:goals."; exit 1; }
 
-goalDef=$(jq -r --arg id "$goal_id" '.goals[] | select(.id == $id or .slug == $id)' "$goalsFile")
+goalDef=$(jq -r --arg id "$goal_id" '(.goals // [])[] | select(.id == $id or .slug == $id)' "$goalsFile")
 [ -z "$goalDef" ] && { echo "ERROR: Goal '$goal_id' not found in org '$org_name'."; exit 1; }
 
 resolvedId=$(echo "$goalDef" | jq -r '.id')
@@ -81,8 +81,8 @@ echo "$goalDef" | jq -r '
 '
 
 # Sub-goals count
-subCount=$(jq --arg pid "$resolvedId" '[.goals[] | select(.parent_id == $pid)] | length' "$goalsFile" 2>/dev/null || echo 0)
-doneCount=$(jq --arg pid "$resolvedId" '[.goals[] | select(.parent_id == $pid and .status == "done")] | length' "$goalsFile" 2>/dev/null || echo 0)
+subCount=$(jq --arg pid "$resolvedId" '[(.goals // [])[] | select(.parent_id == $pid)] | length' "$goalsFile" 2>/dev/null || echo 0)
+doneCount=$(jq --arg pid "$resolvedId" '[(.goals // [])[] | select(.parent_id == $pid and .status == "done")] | length' "$goalsFile" 2>/dev/null || echo 0)
 echo "  Sub-goals:    $subCount total, $doneCount done"
 
 # Linked projects
@@ -109,7 +109,7 @@ function print_tree() {
   local pid="$1"
   local indent="$2"
   local children
-  children=$(jq -r --arg pid "$pid" '.goals[] | select(.parent_id == $pid) |
+  children=$(jq -r --arg pid "$pid" '(.goals // [])[] | select(.parent_id == $pid) |
     [.id, (.status // "open"), (.title // "(no title)")] | @tsv' "$goalsFile" 2>/dev/null)
   while IFS=$'\t' read -r cid cst ctitle; do
     [ -z "$cid" ] && continue
@@ -138,7 +138,7 @@ else
   while IFS= read -r pid; do
     [ -z "$pid" ] && continue
     if [ -f "$projectsFile" ]; then
-      projInfo=$(jq -r --arg id "$pid" '.projects[] | select(.id == $id) |
+      projInfo=$(jq -r --arg id "$pid" '(.projects // [])[] | select(.id == $id) |
         "  [\(.status // "active")] \(.name // $id) — \(.description // "")"' "$projectsFile" 2>/dev/null)
       [ -n "$projInfo" ] && echo "$projInfo" || echo "  [$pid] (project not found in projects file)"
     else
@@ -151,7 +151,7 @@ echo ""
 echo "Issues referencing this goal:"
 issuesFile=".monomind/orgs/${org_name}-issues.json"
 if [ -f "$issuesFile" ]; then
-  count=$(jq --arg gid "$resolvedId" '[.issues[] | select(.goal_id == $gid)] | length' "$issuesFile" 2>/dev/null || echo 0)
+  count=$(jq --arg gid "$resolvedId" '[(.issues // [])[] | select(.goal_id == $gid)] | length' "$issuesFile" 2>/dev/null || echo 0)
   echo "  $count issue(s) linked to this goal."
 fi
 ```
@@ -181,7 +181,7 @@ fi
 ts=$(date -u +%Y-%m-%dT%H:%M:%SZ)
 tmp="${goalsFile}.tmp"
 jq --arg id "$resolvedId" --arg field "$field" --arg val "$value" --arg ts "$ts" \
-  '.goals = [.goals[] | if .id == $id then .[$field] = $val | .updated_at = $ts else . end]' \
+  '.goals = [(.goals // [])[] | if .id == $id then .[$field] = $val | .updated_at = $ts else . end]' \
   "$goalsFile" > "$tmp" && mv "$tmp" "$goalsFile"
 
 echo "Goal '$goal_id' updated: $field = $value"
@@ -218,7 +218,7 @@ echo "  Parent: $goal_id"
 ts=$(date -u +%Y-%m-%dT%H:%M:%SZ)
 tmp="${goalsFile}.tmp"
 jq --arg id "$resolvedId" --arg ts "$ts" \
-  '.goals = [.goals[] | if .id == $id then .status = "done" | .updated_at = $ts | .closed_at = $ts else . end]' \
+  '.goals = [(.goals // [])[] | if .id == $id then .status = "done" | .updated_at = $ts | .closed_at = $ts else . end]' \
   "$goalsFile" > "$tmp" && mv "$tmp" "$goalsFile"
 echo "Goal '$goal_id' → done."
 ```
@@ -229,7 +229,7 @@ echo "Goal '$goal_id' → done."
 ts=$(date -u +%Y-%m-%dT%H:%M:%SZ)
 tmp="${goalsFile}.tmp"
 jq --arg id "$resolvedId" --arg ts "$ts" \
-  '.goals = [.goals[] | if .id == $id then .status = "open" | .updated_at = $ts | .closed_at = null else . end]' \
+  '.goals = [(.goals // [])[] | if .id == $id then .status = "open" | .updated_at = $ts | .closed_at = null else . end]' \
   "$goalsFile" > "$tmp" && mv "$tmp" "$goalsFile"
 echo "Goal '$goal_id' → reopened."
 ```

package/.claude/skills/mastermind/goals.md

@@ -55,7 +55,7 @@ jq -r '
     ("  " * (.depth // 0)) + "[\(.id)] \(.title)  [\(.status // "active")] \(.metric // "")" ,
     tree(gs; .id);
   .goals | tree(.; null)
-' "$goalsFile" 2>/dev/null || jq -r '.goals[] | "[\(.id)] \(.title)  [\(.status // "active")]"' "$goalsFile"
+' "$goalsFile" 2>/dev/null || jq -r '(.goals // [])[] | "[\(.id)] \(.title)  [\(.status // "active")]"' "$goalsFile"
 ```
 
 Render as:
@@ -95,7 +95,7 @@ tmp="${goalsFile}.tmp"
 jq --arg id "$goal_id" \
    --arg status "${status:-}" \
    --arg metric "${metric:-}" \
-   '.goals = [.goals[] | if .id == $id then
+   '.goals = [(.goals // [])[] | if .id == $id then
      (if $status != "" then .status = $status else . end) |
      (if $metric != "" then .metric = $metric else . end) |
      (.updated_at = (now|todate))
@@ -110,7 +110,7 @@ Link a task id to a goal (append to goal's tasks array):
 ```bash
 tmp="${goalsFile}.tmp"
 jq --arg id "$goal_id" --arg task "$task_id" \
-   '.goals = [.goals[] | if .id == $id then .tasks += [$task] else . end]' \
+   '.goals = [(.goals // [])[] | if .id == $id then .tasks += [$task] else . end]' \
    "$goalsFile" > "$tmp" && mv "$tmp" "$goalsFile"
 ```
 
@@ -121,7 +121,7 @@ Mark goal as achieved and timestamp:
 ```bash
 tmp="${goalsFile}.tmp"
 jq --arg id "$goal_id" \
-   '.goals = [.goals[] | if .id == $id then .status = "achieved" | .achieved_at = (now|todate) else . end]' \
+   '.goals = [(.goals // [])[] | if .id == $id then .status = "achieved" | .achieved_at = (now|todate) else . end]' \
    "$goalsFile" > "$tmp" && mv "$tmp" "$goalsFile"
 ```
 

package/.claude/skills/mastermind/heartbeat.md

@@ -49,7 +49,7 @@ memNs="org:${org_name}"
 ## Step 2 — Validate Agent
 
 ```bash
-agentConfig=$(jq --arg id "$agent_id" '.roles[] | select(.id == $id)' "$orgFile")
+agentConfig=$(jq --arg id "$agent_id" '(.roles // [])[] | select(.id == $id)' "$orgFile")
 [ -z "$agentConfig" ] && { echo "ERROR: Agent '$agent_id' not found in org '$org_name'."; exit 1; }
 
 agentTitle=$(echo "$agentConfig" | jq -r '.title')

package/.claude/skills/mastermind/idea.md

@@ -157,7 +157,7 @@ user_market_agents=$(jq \
   --arg cats "$CATEGORIES" \
   --arg kw "$(echo "$PROMPT" | tr '[:upper:]' '[:lower:]' | grep -oE '[a-z]{5,}' | sort -u | tr '\n' ' ')" \
   --argjson n "$TOP_N" \
-  '[ .agents[] | select(.deprecated != true)
+  '[ (.agents // [])[] | select(.deprecated != true)
      | select(.category as $c | ($cats | split(" ") | any(. == $c)))
      | {name: .name, slug: .slug, category: .category,
         score: (
@@ -175,7 +175,7 @@ CATEGORIES="engineering development architecture"
 tech_agents=$(jq \
   --arg cats "$CATEGORIES" \
   --argjson n 3 \
-  '[ .agents[] | select(.deprecated != true)
+  '[ (.agents // [])[] | select(.deprecated != true)
      | select(.category as $c | ($cats | split(" ") | any(. == $c)))
      | {name: .name, slug: .slug}
    ] | unique_by(.slug) | .[0:$n] | [.[].name]' \
@@ -715,7 +715,7 @@ REGISTRY=".monomind/registry.json"
 
 # Dev decomposition agent — pick the most relevant engineering/architecture specialist
 dev_decomp_agent=$(jq -r \
-  '[ .agents[] | select(.deprecated != true)
+  '[ (.agents // [])[] | select(.deprecated != true)
      | select(.category == "engineering" or .category == "architecture")
      | {name: .name,
         score: (.name | ascii_downcase |
@@ -733,7 +733,7 @@ dev_decomp_agent="${dev_decomp_agent:-Software Architect}"
 
 # Ops decomposition agent — pick the most relevant strategy/sales/product specialist
 ops_decomp_agent=$(jq -r \
-  '[ .agents[] | select(.deprecated != true)
+  '[ (.agents // [])[] | select(.deprecated != true)
      | select(.category == "strategy" or .category == "sales" or .category == "product" or .category == "marketing")
      | {name: .name,
         score: (.name | ascii_downcase |

package/.claude/skills/mastermind/import.md

@@ -90,8 +90,8 @@ elif [ "$fmt" = "json" ]; then
   cp "$archive_path" "$tmpDir/org.json"
 fi
 
-# Find the main org config file
-orgConfigFile=$(find "$tmpDir" -name "*.json" | grep -v '\-' | head -1)
+# Find the main org config file (exclude sidecar files and manifest)
+orgConfigFile=$(find "$tmpDir" -name "*.json" | grep -vE -- '-approvals|-state|-activity|-goals|-routines|-projects|-members|-issues|-workspaces|-worktrees|-environments|-plugins|-adapters|-bootstrap|-threads|-budgets|-project-workspaces|-approval-comments|-secrets|/manifest\.json' | head -1)
 [ -z "$orgConfigFile" ] && orgConfigFile=$(find "$tmpDir" -name "org.json" -o -name "export.json" | head -1)
 
 if [ -z "$orgConfigFile" ]; then
@@ -125,11 +125,11 @@ fi
 # Preview agent plans
 echo "AGENT PLANS"
 echo "────────────────────────────────────────────────────────"
-jq -r --arg target "$targetOrgFile" '.roles[] |
+jq -r --arg target "$targetOrgFile" '(.roles // [])[] |
   [.id, (.title // "-"), (.adapter.type // "?"), (.adapter.model // "-")] | @tsv' \
   "$orgConfigFile" | while IFS=$'\t' read -r id title adapter model; do
   if [ -f "$targetOrgFile" ]; then
-    exists=$(jq -r --arg id "$id" '[.roles[] | select(.id == $id)] | length' "$targetOrgFile")
+    exists=$(jq -r --arg id "$id" '[(.roles // [])[] | select(.id == $id)] | length' "$targetOrgFile")
     action=$([ "$exists" -gt 0 ] && echo "UPDATE" || echo "CREATE")
   else
     action="CREATE"
@@ -157,7 +157,7 @@ elif [ "$fmt" = "json" ]; then
   cp "$archive_path" "$tmpDir/org.json"
 fi
 
-orgConfigFile=$(find "$tmpDir" -name "*.json" | grep -v '\-' | head -1)
+orgConfigFile=$(find "$tmpDir" -name "*.json" | grep -vE -- '-approvals|-state|-activity|-goals|-routines|-projects|-members|-issues|-workspaces|-worktrees|-environments|-plugins|-adapters|-bootstrap|-threads|-budgets|-project-workspaces|-approval-comments|-secrets|/manifest\.json' | head -1)
 [ -z "$orgConfigFile" ] && orgConfigFile=$(find "$tmpDir" -name "org.json" -o -name "export.json" | head -1)
 [ -z "$orgConfigFile" ] && { echo "ERROR: Could not find org config file in archive."; exit 1; }
 
@@ -191,7 +191,7 @@ ts=$(date -u +%Y-%m-%dT%H:%M:%SZ)
 if [ -n "$adapter_override" ]; then
   tmp="${orgConfigFile}.ovr"
   jq --arg a "$adapter_override" \
-    '.roles = [.roles[] | .adapter.type = $a]' \
+    '.roles = [(.roles // [])[] | .adapter.type = $a]' \
     "$orgConfigFile" > "$tmp" && mv "$tmp" "$orgConfigFile"
   echo "  Applied adapter override: $adapter_override to all agents"
 fi
@@ -216,7 +216,7 @@ else
 fi
 
 # Copy associated files (goals, routines, issues, etc.) from archive
-for suffix in members issues goals projects routines approvals adapters plugins environments workspaces activity threads budgets; do
+for suffix in members issues goals projects routines approvals adapters plugins environments workspaces worktrees activity threads budgets project-workspaces approval-comments bootstrap; do
   src=$(find "$tmpDir" -name "*-${suffix}.json" | head -1)
   [ -z "$src" ] && src=$(find "$tmpDir" -name "*-${suffix}.jsonl" | head -1)
   if [ -n "$src" ]; then
@@ -238,7 +238,7 @@ try:
 except Exception as e:
     print(json.dumps(json.load(open(dest_path))), file=__import__('sys').stdout)
 PYEOF
-      mv "${dest}.tmp" "$dest"
+      [ $? -eq 0 ] && mv "${dest}.tmp" "$dest" || rm -f "${dest}.tmp"
     else
       cp "$src" "$dest"
     fi

package/.claude/skills/mastermind/inbox.md

@@ -34,7 +34,7 @@ If `caller` is not "command", load brain context following _protocol.md Brain Lo
 if [ -n "$org_name" ]; then
   orgs="$org_name"
 else
-  orgs=$(ls .monomind/orgs/*.json 2>/dev/null | grep -v '\-state\|-goals\|-routines\|-approvals\|-projects\|-worktrees\|-secrets' | xargs -I{} basename {} .json | sort)
+  orgs=$(ls .monomind/orgs/*.json 2>/dev/null | grep -vE -- '-approvals|-state|-activity|-goals|-routines|-projects|-members|-issues|-workspaces|-worktrees|-environments|-plugins|-adapters|-bootstrap|-threads|-budgets|-project-workspaces|-approval-comments' | xargs -I{} basename {} .json | sort)
 fi
 ```
 
@@ -56,7 +56,7 @@ for org in $orgs; do
 
   # 1. Pending approvals
   if [ -f "$approvalsFile" ]; then
-    pending=$(jq '[.approvals[] | select(.status == "pending")] | length' "$approvalsFile" 2>/dev/null || echo 0)
+    pending=$(jq '[(.approvals // [])[] | select(.status == "pending")] | length' "$approvalsFile" 2>/dev/null || echo 0)
     total_approvals=$((total_approvals + pending))
   fi
 
@@ -103,7 +103,7 @@ for org in $orgs; do
 
   # Pending approvals
   if [ -f "$approvalsFile" ]; then
-    pending_approvals=$(jq -r '.approvals[] | select(.status == "pending") | "  [APPROVAL] [\(.id)] \(.agent_id): \(.title)  risk=\(.risk_level // "low")"' \
+    pending_approvals=$(jq -r '(.approvals // [])[] | select(.status == "pending") | "  [APPROVAL] [\(.id)] \(.agent_id): \(.title)  risk=\(.risk_level // "low")"' \
       "$approvalsFile" 2>/dev/null)
     [ -n "$pending_approvals" ] && { has_items=1; echo "ORG: $org"; echo "$pending_approvals"; }
   fi
@@ -132,7 +132,7 @@ for org in $orgs; do
   approvalsFile=".monomind/orgs/${org}-approvals.json"
   [ -f "$approvalsFile" ] || continue
   echo "=== $org ==="
-  jq -r '.approvals[] | select(.status == "pending") |
+  jq -r '(.approvals // [])[] | select(.status == "pending") |
     "[\(.id)] \(.agent_id): \(.title)\n  Action: \(.action)\n  Risk: \(.risk_level // "low")\n  → /mastermind:approve --org '"$org"' --action approve --approval-id \(.id)"
   ' "$approvalsFile" 2>/dev/null || echo "  No pending approvals."
   echo ""

package/.claude/skills/mastermind/instance-settings.md

@@ -185,7 +185,7 @@ stalledCount=0
 for issuesFile in .monomind/orgs/*-issues.json; do
   [ -f "$issuesFile" ] || continue
   cnt=$(jq --arg cutoff "$cutoff" \
-    '[.issues[] | select(.status == "in_progress" and (.lastActivityAt // .createdAt // "") < $cutoff)] | length' \
+    '[(.issues // [])[] | select(.status == "in_progress" and (.lastActivityAt // .createdAt // "") < $cutoff)] | length' \
     "$issuesFile" 2>/dev/null || echo 0)
   stalledCount=$((stalledCount + cnt))
 done
@@ -235,12 +235,12 @@ ts=$(date -u +%Y-%m-%dT%H:%M:%SZ)
 tmp="${accessFile}.tmp"
 jq --arg uid "$user_id" --arg org "$org_name" --arg ts "$ts" \
   '.users = (
-    if any(.users[]; .id == $uid) then
-      [.users[] | if .id == $uid then
+    if any((.users // [])[]; .id == $uid) then
+      [(.users // [])[] | if .id == $uid then
         .companyAccess = ((.companyAccess // []) | if any(.[]; . == $org) then . else . + [$org] end)
       else . end]
     else
-      .users + [{"id": $uid, "companyAccess": [$org], "isInstanceAdmin": false, "grantedAt": $ts}]
+      (.users // []) + [{"id": $uid, "companyAccess": [$org], "isInstanceAdmin": false, "grantedAt": $ts}]
     end)' \
   "$accessFile" > "$tmp" && mv "$tmp" "$accessFile"
 
@@ -258,7 +258,7 @@ accessFile=".monomind/instance-access.json"
 
 tmp="${accessFile}.tmp"
 jq --arg uid "$user_id" --arg org "$org_name" \
-  '.users = [.users[] | if .id == $uid then
+  '.users = [(.users // [])[] | if .id == $uid then
      .companyAccess = [(.companyAccess // [])[] | select(. != $org)]
    else . end]' \
   "$accessFile" > "$tmp" && mv "$tmp" "$accessFile"
@@ -276,9 +276,9 @@ accessFile=".monomind/instance-access.json"
 
 tmp="${accessFile}.tmp"
 jq --arg uid "$user_id" \
-  '.users = (if any(.users[]; .id == $uid) then
-    [.users[] | if .id == $uid then .isInstanceAdmin = true else . end]
-  else .users + [{"id":$uid,"companyAccess":[],"isInstanceAdmin":true}] end)' \
+  '.users = (if any((.users // [])[]; .id == $uid) then
+    [(.users // [])[] | if .id == $uid then .isInstanceAdmin = true else . end]
+  else (.users // []) + [{"id":$uid,"companyAccess":[],"isInstanceAdmin":true}] end)' \
   "$accessFile" > "$tmp" && mv "$tmp" "$accessFile"
 
 echo "User '$user_id' granted instance admin role."
@@ -292,7 +292,7 @@ echo "User '$user_id' granted instance admin role."
 accessFile=".monomind/instance-access.json"
 tmp="${accessFile}.tmp"
 jq --arg uid "$user_id" \
-  '.users = [.users[] | if .id == $uid then .isInstanceAdmin = false else . end]' \
+  '.users = [(.users // [])[] | if .id == $uid then .isInstanceAdmin = false else . end]' \
   "$accessFile" > "$tmp" && mv "$tmp" "$accessFile"
 
 echo "Instance admin revoked for user '$user_id'."

package/.claude/skills/mastermind/instance.md

@@ -78,7 +78,7 @@ jq -r '
 
 echo ""
 echo "ORGS"
-orgs=$(ls .monomind/orgs/*.json 2>/dev/null | grep -v '\-state\|-goals\|-routines\|-approvals\|-projects\|-worktrees\|-secrets\|-members\|-adapters\|-plugins' | wc -l | tr -d ' ')
+orgs=$(ls .monomind/orgs/*.json 2>/dev/null | grep -vE -- '-approvals|-state|-activity|-goals|-routines|-projects|-members|-issues|-workspaces|-worktrees|-environments|-plugins|-adapters|-bootstrap|-threads|-budgets|-project-workspaces|-approval-comments' | wc -l | tr -d ' ')
 echo "  Active orgs: $orgs"
 ```
 
@@ -96,14 +96,15 @@ found=0
 for orgF in .monomind/orgs/*.json; do
   [[ "$orgF" == *-state* || "$orgF" == *-goals* || "$orgF" == *-routines* || "$orgF" == *-approvals* ]] && continue
   [[ "$orgF" == *-projects* || "$orgF" == *-worktrees* || "$orgF" == *-members* || "$orgF" == *-adapters* ]] && continue
-  [[ "$orgF" == *-plugins* || "$orgF" == *-bootstrap* ]] && continue
+  [[ "$orgF" == *-plugins* || "$orgF" == *-bootstrap* || "$orgF" == *-activity* ]] && continue
+  [[ "$orgF" == *-issues* || "$orgF" == *-workspaces* || "$orgF" == *-environments* ]] && continue
 
   orgName=$(basename "$orgF" .json)
   [ -n "$org_name" ] && [ "$orgName" != "$org_name" ] && continue
 
   stateFile=".monomind/orgs/${orgName}-state.json"
   jq -r --arg org "$orgName" '
-    .roles[] |
+    (.roles // [])[] |
     select(.heartbeat.enabled == true or (.runtimeConfig.heartbeat.enabled == true)) |
     [$org, .id,
      ((.heartbeat.interval // .runtimeConfig.heartbeat.interval // "900") | tostring) + "s",
@@ -131,12 +132,12 @@ orgFile=".monomind/orgs/${org_name}.json"
 
 # Get current state
 current=$(jq -r --arg id "$agent_id" \
-  '.roles[] | select(.id == $id) | .heartbeat.enabled // false' "$orgFile" 2>/dev/null || echo "false")
+  '(.roles // [])[] | select(.id == $id) | .heartbeat.enabled // false' "$orgFile" 2>/dev/null || echo "false")
 newState=$([ "$current" = "true" ] && echo "false" || echo "true")
 
 tmp="${orgFile}.tmp"
 jq --arg id "$agent_id" --argjson enabled "$newState" \
-  '.roles = [.roles[] | if .id == $id then .heartbeat.enabled = $enabled else . end]' \
+  '.roles = [(.roles // [])[] | if .id == $id then .heartbeat.enabled = $enabled else . end]' \
   "$orgFile" > "$tmp" && mv "$tmp" "$orgFile"
 
 echo "Heartbeat for '$agent_id' → $([ "$newState" = "true" ] && echo 'ENABLED' || echo 'DISABLED')"
@@ -187,7 +188,8 @@ total_pending=0
 for orgF in .monomind/orgs/*.json; do
   [[ "$orgF" == *-state* || "$orgF" == *-goals* || "$orgF" == *-routines* || "$orgF" == *-approvals* ]] && continue
   [[ "$orgF" == *-projects* || "$orgF" == *-worktrees* || "$orgF" == *-members* || "$orgF" == *-adapters* ]] && continue
-  [[ "$orgF" == *-plugins* || "$orgF" == *-bootstrap* ]] && continue
+  [[ "$orgF" == *-plugins* || "$orgF" == *-bootstrap* || "$orgF" == *-activity* ]] && continue
+  [[ "$orgF" == *-issues* || "$orgF" == *-workspaces* || "$orgF" == *-environments* ]] && continue
 
   orgName=$(basename "$orgF" .json)
   total_orgs=$((total_orgs + 1))
@@ -199,7 +201,7 @@ for orgF in .monomind/orgs/*.json; do
     total_running=$((total_running + running))
   fi
   if [ -f "$approvalsFile" ]; then
-    pending=$(jq '[.approvals[] | select(.status == "pending")] | length' "$approvalsFile" 2>/dev/null || echo 0)
+    pending=$(jq '[(.approvals // [])[] | select(.status == "pending")] | length' "$approvalsFile" 2>/dev/null || echo 0)
     total_pending=$((total_pending + pending))
   fi
 done

package/.claude/skills/mastermind/invite-landing.md

@@ -52,7 +52,7 @@ if [ -z "$org_name" ]; then
   # Search all members files for a matching invite token
   for mf in .monomind/orgs/*-members.json; do
     [ -f "$mf" ] || continue
-    match=$(jq -r --arg t "$token" '.join_requests[] | select(.token == $t or .id == $t) | .id' "$mf" 2>/dev/null | head -1)
+    match=$(jq -r --arg t "$token" '(.join_requests // [])[] | select(.token == $t or .id == $t) | .id' "$mf" 2>/dev/null | head -1)
     if [ -n "$match" ]; then
       org_name=$(basename "$mf" "-members.json")
       break
@@ -65,7 +65,7 @@ membersFile=".monomind/orgs/${org_name}-members.json"
 [ ! -f "$membersFile" ] && { echo "ERROR: Org '$org_name' members file not found."; exit 1; }
 
 inviteDef=$(jq -r --arg t "$token" \
-  '.join_requests[] | select((.token == $t or .id == $t) and .type == "invite")' \
+  '(.join_requests // [])[] | select((.token == $t or .id == $t) and .type == "invite")' \
   "$membersFile" | head -c 4096)
 [ -z "$inviteDef" ] && { echo "ERROR: Invite token '$token' not found or already used."; exit 1; }
 
@@ -117,7 +117,7 @@ tmp="${membersFile}.tmp"
 # Mark invite accepted and add member record
 jq --arg token "$token" --arg mid "$memberId" --arg name "$display_name" \
    --arg email "$email" --arg role "$inviteRole" --arg ts "$ts" \
-  '.join_requests = [.join_requests[] | if (.token == $token or .id == $token) then
+  '.join_requests = [(.join_requests // [])[] | if (.token == $token or .id == $token) then
      .status = "accepted" | .acceptedAt = $ts | .acceptedAs = "human"
    else . end] |
    .members += [{"id":$mid,"displayName":$name,"email":$email,"role":$role,
@@ -167,7 +167,7 @@ ts=$(date -u +%Y-%m-%dT%H:%M:%SZ)
 tmp="${membersFile}.tmp"
 jq --arg token "$token" --arg mid "$agentId" --arg name "$agent_name" \
    --arg role "$inviteRole" --arg adapter "$adapterType" --arg model "$modelId" --arg ts "$ts" \
-  '.join_requests = [.join_requests[] | if (.token == $token or .id == $token) then
+  '.join_requests = [(.join_requests // [])[] | if (.token == $token or .id == $token) then
      .status = "accepted" | .acceptedAt = $ts | .acceptedAs = "agent"
    else . end] |
    .members += [{"id":$mid,"displayName":$name,"role":$role,
@@ -178,7 +178,7 @@ jq --arg token "$token" --arg mid "$agentId" --arg name "$agent_name" \
 # Also add to org roles file so the agent can run
 orgFile=".monomind/orgs/${org_name}.json"
 if [ -f "$orgFile" ]; then
-  dupCheck=$(jq -r --arg id "$agentId" '[.roles[] | select(.id == $id)] | length' "$orgFile")
+  dupCheck=$(jq -r --arg id "$agentId" '[(.roles // [])[] | select(.id == $id)] | length' "$orgFile")
   if [ "$dupCheck" -eq 0 ]; then
     tmp2="${orgFile}.tmp"
     jq --arg id "$agentId" --arg title "$agent_name" \