mongodb-mcp-server 2.0.1-alpha.4 → 2.1.0

package/dist/esm/tools/mongodb/read/aggregate.js

@@ -9,7 +9,7 @@ import { AGG_COUNT_MAX_TIME_MS_CAP, ONE_MB, CURSOR_LIMITS_TO_LLM_TEXT, CURSOR_LI
 import { LogId } from "../../../common/logging/index.js";
 import { AnyAggregateStage, VectorSearchStage } from "../mongodbSchemas.js";
 import { assertVectorSearchFilterFieldsAreIndexed, } from "../../../helpers/assertVectorSearchFilterFieldsAreIndexed.js";
-import { isWriteStage } from "../../../helpers/mqlGuards.js";
+import { getWriteStageTargets } from "../../../helpers/mqlGuards.js";
 import { bsonToJson } from "../../../helpers/bsonToJson.js";
 export const pipelineDescriptionWithVectorSearch = `\
 An array of aggregation stages to execute.
@@ -136,7 +136,8 @@ export class AggregateTool extends MongoDBToolBase {
         };
         this.outputSchema = AggregateOutputSchema;
     }
-    async execute({ connectionId, database, collection, pipeline, responseBytesLimit }, { signal }) {
+    async execute({ connectionId, database, collection, pipeline, responseBytesLimit }, context) {
+        const { signal } = context;
         let aggregationCursor = undefined;
         try {
             const provider = await this.resolveConnection(connectionId);
@@ -196,7 +197,9 @@ export class AggregateTool extends MongoDBToolBase {
             let documents;
             let count;
             let appliedLimits = [];
-            if (pipeline.some((stage) => isWriteStage(stage))) {
+            const writeStageTargets = getWriteStageTargets(pipeline, database);
+            if (writeStageTargets.length > 0) {
+                await this.confirmWriteStages(writeStageTargets, context);
                 // This is a write pipeline, so special-case it and don't attempt to apply limits or caps
                 aggregationCursor = provider.aggregate(database, collection, pipeline, {
                     signal,

package/dist/esm/tools/mongodb/read/aggregate.js.map

@@ -1 +1 @@
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package/dist/esm/tools/mongodb/read/aggregateDB.d.ts

@@ -23,7 +23,7 @@ export declare class AggregateDBTool extends MongoDBToolBase {
             "tool.responseBytesLimit": "tool.responseBytesLimit";
         }>>;
     };
-    protected execute({ connectionId, database, pipeline, responseBytesLimit }: ToolArgs<typeof this.argsShape>, { signal }: ToolExecutionContext): Promise<ToolResult<typeof this.outputSchema>>;
+    protected execute({ connectionId, database, pipeline, responseBytesLimit }: ToolArgs<typeof this.argsShape>, context: ToolExecutionContext): Promise<ToolResult<typeof this.outputSchema>>;
     private safeCloseCursor;
     private assertOnlyUsesPermittedStages;
     private countAggregationResultDocuments;

package/dist/esm/tools/mongodb/read/aggregateDB.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"aggregateDB.d.ts","sourceRoot":"","sources":["../../../../../src/tools/mongodb/read/aggregateDB.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,OAAO,EAAqC,eAAe,EAAE,MAAM,mBAAmB,CAAC;AACvF,OAAO,KAAK,EAAE,QAAQ,EAAE,aAAa,EAAE,oBAAoB,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AA2B/F,eAAO,MAAM,aAAa;;CAOzB,CAAC;AAEF,qBAAa,eAAgB,SAAQ,eAAe;IAChD,MAAM,CAAC,QAAQ,SAAkB;IAC1B,WAAW,SAAmD;IAC9D,SAAS;;;;;MAWd;IACF,MAAM,CAAC,aAAa,EAAE,aAAa,CAAU;IAE7B,YAAY;;;;;;;;MAA2B;cAEvC,OAAO,CACnB,EAAE,YAAY,EAAE,QAAQ,EAAE,QAAQ,EAAE,kBAAkB,EAAE,EAAE,QAAQ,CAAC,OAAO,IAAI,CAAC,SAAS,CAAC,EACzF,EAAE,MAAM,EAAE,EAAE,oBAAoB,GACjC,OAAO,CAAC,UAAU,CAAC,OAAO,IAAI,CAAC,YAAY,CAAC,CAAC;YAmFlC,eAAe;IAY7B,OAAO,CAAC,6BAA6B;YAYvB,+BAA+B;IAqC7C,OAAO,CAAC,eAAe;CA0B1B"}
+{"version":3,"file":"aggregateDB.d.ts","sourceRoot":"","sources":["../../../../../src/tools/mongodb/read/aggregateDB.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,OAAO,EAAqC,eAAe,EAAE,MAAM,mBAAmB,CAAC;AACvF,OAAO,KAAK,EAAE,QAAQ,EAAE,aAAa,EAAE,oBAAoB,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AA2B/F,eAAO,MAAM,aAAa;;CAOzB,CAAC;AAEF,qBAAa,eAAgB,SAAQ,eAAe;IAChD,MAAM,CAAC,QAAQ,SAAkB;IAC1B,WAAW,SAAmD;IAC9D,SAAS;;;;;MAWd;IACF,MAAM,CAAC,aAAa,EAAE,aAAa,CAAU;IAE7B,YAAY;;;;;;;;MAA2B;cAEvC,OAAO,CACnB,EAAE,YAAY,EAAE,QAAQ,EAAE,QAAQ,EAAE,kBAAkB,EAAE,EAAE,QAAQ,CAAC,OAAO,IAAI,CAAC,SAAS,CAAC,EACzF,OAAO,EAAE,oBAAoB,GAC9B,OAAO,CAAC,UAAU,CAAC,OAAO,IAAI,CAAC,YAAY,CAAC,CAAC;YAuFlC,eAAe;IAY7B,OAAO,CAAC,6BAA6B;YAYvB,+BAA+B;IAqC7C,OAAO,CAAC,eAAe;CA0B1B"}

package/dist/esm/tools/mongodb/read/aggregateDB.js

@@ -4,7 +4,7 @@ import { formatUntrustedData } from "../../tool.js";
 import { ErrorCodes, MongoDBError } from "../../../common/errors.js";
 import { collectCursorUntilMaxBytesLimit } from "../../../helpers/collectCursorUntilMaxBytes.js";
 import { operationWithFallback } from "../../../helpers/operationWithFallback.js";
-import { isWriteStage } from "../../../helpers/mqlGuards.js";
+import { getWriteStageTargets } from "../../../helpers/mqlGuards.js";
 import { AGG_COUNT_MAX_TIME_MS_CAP, ONE_MB, CURSOR_LIMITS_TO_LLM_TEXT, CURSOR_LIMIT_KEYS, } from "../../../helpers/constants.js";
 import { LogId } from "../../../common/logging/index.js";
 import { AnyAggregateStage, DB_AGGREGATE_STAGE_OPERATORS } from "../mongodbSchemas.js";
@@ -39,7 +39,8 @@ export class AggregateDBTool extends MongoDBToolBase {
         };
         this.outputSchema = AggregateDBOutputSchema;
     }
-    async execute({ connectionId, database, pipeline, responseBytesLimit }, { signal }) {
+    async execute({ connectionId, database, pipeline, responseBytesLimit }, context) {
+        const { signal } = context;
         let aggregationCursor = undefined;
         try {
             const provider = await this.resolveConnection(connectionId);
@@ -48,7 +49,9 @@ export class AggregateDBTool extends MongoDBToolBase {
             let documents;
             let aggResultsCount;
             let appliedLimits = [];
-            if (pipeline.some((stage) => isWriteStage(stage))) {
+            const writeStageTargets = getWriteStageTargets(pipeline, database);
+            if (writeStageTargets.length > 0) {
+                await this.confirmWriteStages(writeStageTargets, context);
                 // This is a write pipeline, so special-case it and don't attempt to apply limits or caps
                 aggregationCursor = provider.aggregateDb(database, pipeline, {
                     ...this.getOperationOptions(signal),

package/dist/esm/tools/mongodb/read/aggregateDB.js.map

@@ -1 +1 @@
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package/dist/esm/tools/tool.d.ts

@@ -27,7 +27,16 @@ type ServerRequestHandlerExtra = RequestHandlerExtra<ServerRequest, ServerNotifi
  * is called manually; `requestInfo` is additionally only available when
  * running atop StreamableHttpTransport.
  */
-export type ToolExecutionContext = Pick<ServerRequestHandlerExtra, "signal"> & Partial<Pick<ServerRequestHandlerExtra, "_meta" | "requestId" | "requestInfo" | "sendNotification">>;
+export type ToolExecutionContext = Pick<ServerRequestHandlerExtra, "signal"> & Partial<Pick<ServerRequestHandlerExtra, "_meta" | "requestId" | "requestInfo" | "sendNotification">> & {
+    /**
+     * Total time spent waiting for the user to answer elicitation requests
+     * raised while handling this call. Accumulated by
+     * `ToolBase.requestConfirmation` and subtracted from the tool execution
+     * duration metric, so that the user's think-time is not reported as
+     * time the tool spent working.
+     */
+    elicitationDurationMs?: number;
+};
 export type ToolResult<OutputSchema extends ZodRawShape | undefined = undefined> = OutputSchema extends ZodRawShape ? StructuredToolResult<OutputSchema> : {
     content: CallToolResult["content"];
     isError?: boolean;
@@ -435,20 +444,22 @@ export declare abstract class ToolBase<TUserConfig extends UserConfig = UserConf
     /** Checks if the tool requires elicitation */
     requiresConfirmation(): boolean;
     /**
-     * Check if the user has confirmed the tool execution (if required by
-     * configuration).
+     * Asks the user to confirm an operation, resolving to `true` when they
+     * accept and `false` when they decline.
      *
-     * This method automatically checks if the tool name is in the
-     * `confirmationRequiredTools` configuration list and requests user
-     * confirmation via the elicitation service if needed.
+     * This is automatically called by `invoke` for confirmationRequired tools.
+     * Other tools can call it at any point of their execution, which matters when
+     * the decision depends on the arguments or needs to happen after some preliminary work.
      *
-     * @param args - The tool arguments
+     * Resolves to `true` without prompting when the client does not support
+     * elicitation, matching how confirmation-required tools behave there.
+     *
+     * @param message - The message to display to the user.
      * @param context - The tool execution context, used to relate the
-     * confirmation request to the in-flight tool call
-     * @returns A promise resolving to `true` if confirmed or confirmation not
-     * required, `false` otherwise
+     * confirmation request to the in-flight tool call and to record how long the
+     * user took to answer.
      */
-    verifyConfirmed(args: ToolArgs<typeof this.argsShape>, context: ToolExecutionContext): Promise<boolean>;
+    protected requestConfirmation(message: string, context: ToolExecutionContext): Promise<boolean>;
     /**
      * Resolves the request id that elicitation requests should be related to.
      *

package/dist/esm/tools/tool.d.ts.map

@@ -1 +1 @@
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package/dist/esm/tools/tool.js

@@ -168,31 +168,39 @@ export class ToolBase {
     }
     /** This is used internally by the server to invoke the tool. It can also be run manually to call the tool directly. */
     async invoke(args, context) {
-        let startTime = Date.now();
+        const startTime = Date.now();
+        /**
+         * Records the outcome of the call, emitting its telemetry event and
+         * observing its execution duration. `error` is passed when the call
+         * failed, and its type is reported alongside the metric.
+         */
+        const recordOutcome = (result, error) => {
+            // Time the user spent answering an elicitation is not time the tool
+            // spent working, so it counts towards neither duration below.
+            const executionStartTime = startTime + (context.elicitationDurationMs ?? 0);
+            this.emitToolEvent(args, { startTime: executionStartTime, result });
+            this.metrics.get("toolExecutionDuration").observe({
+                tool_name: this.name,
+                category: this.category,
+                status: error !== undefined || result.isError ? "error" : "success",
+                operation_type: this.operationType,
+                ...(error !== undefined ? { error_type: error instanceof Error ? error.name : "unknown" } : {}),
+            }, (Date.now() - executionStartTime) / 1000);
+        };
         try {
-            if (this.requiresConfirmation()) {
-                if (!(await this.verifyConfirmed(args, context))) {
-                    this.session.logger.debug({
-                        id: LogId.toolExecute,
-                        context: "tool",
-                        message: `User did not confirm the execution of the \`${this.name}\` tool so the operation was not performed.`,
-                        noRedaction: true,
-                        attributes: { ...requestIdAttr(context.requestInfo?.headers) },
-                    });
-                    return {
-                        content: [
-                            {
-                                type: "text",
-                                text: `User did not confirm the execution of the \`${this.name}\` tool so the operation was not performed.`,
-                            },
-                        ],
-                        isError: true,
-                    };
-                }
-                // We do not want to include the elicitation time in the tool execution time
-                // so we reset the startTime to the current time. We may want to consider adding
-                // a separate field for elicitation time in the future.
-                startTime = Date.now();
+            if (this.requiresConfirmation() &&
+                !(await this.requestConfirmation(this.getConfirmationMessage(args), context))) {
+                const text = `User did not confirm the execution of the \`${this.name}\` tool so the operation was not performed.`;
+                this.session.logger.debug({
+                    id: LogId.toolExecute,
+                    context: "tool",
+                    message: text,
+                    noRedaction: true,
+                    attributes: { ...requestIdAttr(context.requestInfo?.headers) },
+                });
+                const declined = { content: [{ type: "text", text }], isError: true };
+                recordOutcome(declined);
+                return declined;
             }
             this.session.logger.debug({
                 id: LogId.toolExecute,
@@ -203,14 +211,7 @@ export class ToolBase {
             });
             const toolCallResult = await this.execute(args, context);
             const result = await this.appendUIResource(toolCallResult);
-            this.emitToolEvent(args, { startTime, result });
-            const durationSeconds = (Date.now() - startTime) / 1000;
-            this.metrics.get("toolExecutionDuration").observe({
-                tool_name: this.name,
-                category: this.category,
-                status: result.isError ? "error" : "success",
-                operation_type: this.operationType,
-            }, durationSeconds);
+            recordOutcome(result);
             this.session.logger.debug({
                 id: LogId.toolExecute,
                 context: "tool",
@@ -228,15 +229,7 @@ export class ToolBase {
                 attributes: { ...requestIdAttr(context.requestInfo?.headers) },
             });
             const toolResult = await this.handleError(error, args);
-            this.emitToolEvent(args, { startTime, result: toolResult });
-            const durationSeconds = (Date.now() - startTime) / 1000;
-            this.metrics.get("toolExecutionDuration").observe({
-                tool_name: this.name,
-                category: this.category,
-                status: "error",
-                operation_type: this.operationType,
-                error_type: error instanceof Error ? error.name : "unknown",
-            }, durationSeconds);
+            recordOutcome(toolResult, error);
             return toolResult;
         }
     }
@@ -266,23 +259,22 @@ export class ToolBase {
         return this.config.confirmationRequiredTools.includes(this.name);
     }
     /**
-     * Check if the user has confirmed the tool execution (if required by
-     * configuration).
+     * Asks the user to confirm an operation, resolving to `true` when they
+     * accept and `false` when they decline.
      *
-     * This method automatically checks if the tool name is in the
-     * `confirmationRequiredTools` configuration list and requests user
-     * confirmation via the elicitation service if needed.
+     * This is automatically called by `invoke` for confirmationRequired tools.
+     * Other tools can call it at any point of their execution, which matters when
+     * the decision depends on the arguments or needs to happen after some preliminary work.
      *
-     * @param args - The tool arguments
+     * Resolves to `true` without prompting when the client does not support
+     * elicitation, matching how confirmation-required tools behave there.
+     *
+     * @param message - The message to display to the user.
      * @param context - The tool execution context, used to relate the
-     * confirmation request to the in-flight tool call
-     * @returns A promise resolving to `true` if confirmed or confirmation not
-     * required, `false` otherwise
+     * confirmation request to the in-flight tool call and to record how long the
+     * user took to answer.
      */
-    async verifyConfirmed(args, context) {
-        if (!this.requiresConfirmation()) {
-            return true;
-        }
+    async requestConfirmation(message, context) {
         const relatedRequestId = this.elicitationRelatedRequestId(context);
         this.session.logger.info({
             id: LogId.toolConfirmationRequested,
@@ -315,7 +307,7 @@ export class ToolBase {
         }
         const startedAt = Date.now();
         try {
-            const confirmed = await this.elicitation.requestConfirmation(this.getConfirmationMessage(args), {
+            const confirmed = await this.elicitation.requestConfirmation(message, {
                 relatedRequestId,
                 progressToken: context._meta?.progressToken,
                 sendNotification: context.sendNotification,
@@ -339,6 +331,9 @@ export class ToolBase {
             });
             throw error;
         }
+        finally {
+            context.elicitationDurationMs = (context.elicitationDurationMs ?? 0) + (Date.now() - startedAt);
+        }
     }
     /**
      * Resolves the request id that elicitation requests should be related to.

package/dist/esm/tools/tool.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "mongodb-mcp-server",
   "description": "MongoDB Model Context Protocol Server",
-  "version": "2.0.1-alpha.4",
+  "version": "2.1.0",
   "type": "module",
   "mcpName": "io.github.mongodb-js/mongodb-mcp-server",
   "exports": {
@@ -155,8 +155,8 @@
     "ts-levenshtein": "^1.0.7",
     "yaml": "^2.8.1",
     "zod": "^4.4.3",
-    "@mongodb-js/mcp-metrics": "2.0.1-alpha.4",
-    "@mongodb-js/mcp-types": "2.0.1-alpha.4"
+    "@mongodb-js/mcp-types": "2.1.0",
+    "@mongodb-js/mcp-metrics": "2.1.0"
   },
   "peerDependencies": {
     "@types/express": "^5.0.3"