mongodb-mcp-server 0.1.1 → 0.1.3

package/.dockerignore

@@ -0,0 +1,11 @@
+dist
+node_modules
+.vscode
+.github
+.git
+# Environment variables
+.env
+
+tests
+coverage
+scripts

package/.github/pull_request_template.md

@@ -0,0 +1,5 @@
+## Proposed changes
+
+## Checklist
+
+- [ ] I have signed the [MongoDB CLA](https://www.mongodb.com/legal/contributor-agreement)

package/.github/workflows/check-pr-title.yml

@@ -0,0 +1,29 @@
+name: "Check PR Title"
+on:
+  pull_request:
+    types:
+      [
+        opened,
+        synchronize,
+        reopened,
+        ready_for_review,
+        labeled,
+        unlabeled,
+        converted_to_draft,
+        edited,
+      ]
+
+permissions:
+  pull-requests: read # to read PR title and labels
+
+jobs:
+  check-pr-title:
+    name: Check PR Title
+    runs-on: ubuntu-latest
+    steps:
+      - name: Enforce conventional commit style
+        uses: realm/ci-actions/title-checker@d6cc8f067474759d38e6d24e272027b4c88bc0a9
+        with:
+          regex: '^(build|chore|ci|docs|feat|fix|perf|refactor|revert|style|test|ops){1}(\([\w\-\.]+\))?(!)?: .*'
+          error-hint: 'Invalid PR title. Make sure it follows the conventional commit specification (i.e. "<type>(<optional scope>): <description>") or add the no-title-validation label'
+          ignore-labels: "no-title-validation"

package/.github/workflows/code_health.yaml

@@ -11,7 +11,7 @@ permissions: {}
 jobs:
   run-tests:
     name: Run MongoDB tests
-    if: github.event.pull_request.user.login != 'dependabot[bot]' && github.event.pull_request.head.repo.full_name == github.repository
+    if: github.event_name == 'push' || (github.event.pull_request.user.login != 'dependabot[bot]' && github.event.pull_request.head.repo.full_name == github.repository)
     strategy:
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
@@ -38,7 +38,7 @@ jobs:
 
   run-atlas-tests:
     name: Run Atlas tests
-    if: github.event.pull_request.user.login != 'dependabot[bot]' && github.event.pull_request.head.repo.full_name == github.repository
+    if: github.event_name == 'push' || (github.event.pull_request.user.login != 'dependabot[bot]' && github.event.pull_request.head.repo.full_name == github.repository)
     runs-on: ubuntu-latest
     steps:
       - uses: GitHubSecurityLab/actions-permissions/monitor@v1
@@ -64,7 +64,7 @@ jobs:
 
   coverage:
     name: Report Coverage
-    if: always() && github.event.pull_request.user.login != 'dependabot[bot]' && github.event.pull_request.head.repo.full_name == github.repository
+    if: always() && (github.event_name == 'push' || (github.event.pull_request.user.login != 'dependabot[bot]' && github.event.pull_request.head.repo.full_name == github.repository))
     runs-on: ubuntu-latest
     needs: [run-tests, run-atlas-tests]
     steps:

package/.github/workflows/docker.yaml

@@ -0,0 +1,57 @@
+name: Daily Release Docker Image
+on:
+  schedule:
+    - cron: "0 1 * * *" # Every day at 1:00 AM
+  workflow_dispatch: # Run the action manually
+permissions:
+  contents: read
+  issues: write
+jobs:
+  push:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: GitHubSecurityLab/actions-permissions/monitor@v1
+        with:
+          config: ${{ vars.PERMISSIONS_CONFIG }}
+      - name: Check out code
+        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435
+      - name: Login to Docker Hub
+        uses: docker/login-action@74a5d142397b4f367a81961eba4e8cd7edddf772
+        with:
+          username: "${{ secrets.DOCKERHUB_USERNAME }}"
+          password: "${{ secrets.DOCKERHUB_PASSWORD }}"
+      - name: Set date and version
+        id: set-properties
+        run: |
+          DATE=$(date +'%Y-%m-%d')
+          VERSION=$(npm pkg get version | tr -d '"')
+          echo "DATE=${DATE}" >> "$GITHUB_OUTPUT"
+          echo "VERSION=${VERSION}" >> "$GITHUB_OUTPUT"
+      - name: Build and push image to dockerhub registry
+        uses: docker/build-push-action@263435318d21b8e681c14492fe198d362a7d2c83
+        with:
+          context: .
+          platforms: linux/amd64,linux/arm64
+          tags: ${{ vars.DOCKERHUB_IMAGE_REPOSITORY }}:latest, ${{ vars.DOCKERHUB_IMAGE_REPOSITORY }}:${{ steps.set-properties.outputs.VERSION }}, ${{ vars.DOCKERHUB_IMAGE_REPOSITORY }}:${{ steps.set-properties.outputs.VERSION }}-${{ steps.set-properties.outputs.DATE }}
+          file: Dockerfile
+          push: true
+          provenance: mode=max
+          sbom: true
+          build-args: |
+            VERSION=${{ steps.set-properties.outputs.VERSION }}
+      - uses: mongodb-js/devtools-shared/actions/setup-bot-token@main
+        id: app-token
+        if: ${{ failure() }}
+        with:
+          app-id: ${{ vars.DEVTOOLS_BOT_APP_ID }}
+          private-key: ${{ secrets.DEVTOOLS_BOT_PRIVATE_KEY }}
+      - name: Create Issue
+        if: ${{ failure() }}
+        uses: imjohnbo/issue-bot@572eed14422c4d6ca37e870f97e7da209422f5bd
+        with:
+          token: ${{ steps.app-token.outputs.token }}
+          title: Release Failure for Docker Image ${{ steps.set-properties.outputs.VERSION }}-${{ steps.set-properties.outputs.DATE }}
+          body: See https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}
+          labels: "docker, release_failure"

package/.github/workflows/stale.yml

@@ -0,0 +1,32 @@
+---
+name: "Stale issues and PRs handler"
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: "0 0 * * *"
+
+permissions: read-all
+
+jobs:
+  stale:
+    runs-on: ubuntu-latest
+    permissions:
+      issues: write
+      pull-requests: write
+    steps:
+      - uses: GitHubSecurityLab/actions-permissions/monitor@v1
+      - uses: actions/stale@v9
+        id: stale
+        with:
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
+          stale-issue-message: |
+            This issue has gone 30 days without any activity and meets the project's definition of "stale". This will be auto-closed if there is no new activity over the next 30 days. If the issue is still relevant and active, you can simply comment with a "bump" to keep it open, or add the label "not_stale". Thanks for keeping our repository healthy!
+          stale-pr-message: |
+            This PR has gone 30 days without any activity and meets the project's definition of "stale". This will be auto-closed if there is no new activity over the next 30 days. If the issue is still relevant and active, you can simply comment with a "bump" to keep it open, or add the label "not_stale". Thanks for keeping our repository healthy!
+          stale-issue-label: "no-issue-activity"
+          stale-pr-label: "no-pr-activity"
+          days-before-stale: 30
+          days-before-close: 30
+          exempt-all-milestones: true
+          exempt-issue-labels: "not_stale"
+          exempt-pr-labels: "not_stale"

package/.smithery/Dockerfile

@@ -0,0 +1,30 @@
+# Generated by https://smithery.ai. See: https://smithery.ai/docs/config#dockerfile
+# ----- Build Stage -----
+FROM node:lts-alpine AS builder
+WORKDIR /app
+
+# Copy package and configuration
+COPY ../package.json ../package-lock.json ../tsconfig.json ../tsconfig.build.json ./
+
+# Copy source code
+COPY ../src ./src
+
+# Install dependencies and build
+RUN npm ci && npm run build
+
+# ----- Production Stage -----
+FROM node:lts-alpine
+
+# Copy built artifacts
+COPY --from=builder /app/dist ./dist
+
+# Copy package.json for production install
+COPY ../package.json ../package-lock.json ./
+
+# Install only production dependencies
+RUN npm ci --production --ignore-scripts
+
+# Expose no ports (stdio only)
+
+# Default command
+CMD ["node", "dist/index.js"]

package/.smithery/smithery.yaml

@@ -0,0 +1,73 @@
+# Smithery.ai configuration
+build:
+  dockerfile: Dockerfile
+  dockerBuildPath: ../
+startCommand:
+  type: stdio
+  configSchema:
+    type: object
+    properties:
+      atlasClientId:
+        type: string
+        title: Atlas Client Id
+        description: Atlas API client ID for authentication. Required for running Atlas tools.
+      atlasClientSecret:
+        type: string
+        title: Atlas Client Secret
+        description: Atlas API client secret for authentication. Required for running Atlas tools.
+      connectionString:
+        type: string
+        title: MongoDB Connection string
+        description: MongoDB connection string for direct database connections. Optional, if not set, you'll need to call the `connect` tool before interacting with MongoDB data.
+      readOnly:
+        type: boolean
+        title: Read-only
+        description: When set to true, only allows read and metadata operation types, disabling create/update/delete operations.
+        default: false
+      indexCheck:
+        type: boolean
+        title: Index Check
+        description: When set to true, enforces that query operations must use an index, rejecting queries that would perform a collection scan.
+        default: false
+  exampleConfig:
+    atlasClientId: YOUR_ATLAS_CLIENT_ID
+    atlasClientSecret: YOUR_ATLAS_CLIENT_SECRET
+    connectionString: mongodb+srv://USERNAME:PASSWORD@YOUR_CLUSTER.mongodb.net
+    readOnly: true
+    indexCheck: false
+
+  commandFunction:
+    # A function that produces the CLI command to start the MCP on stdio.
+    |-
+    (config) => {
+      const args = ['dist/index.js'];
+      if (config) {
+        if (config.atlasClientId) {
+          args.push('--apiClientId');
+          args.push(config.atlasClientId);
+        }
+
+        if (config.atlasClientSecret) {
+          args.push('--apiClientSecret');
+          args.push(config.atlasClientSecret);
+        }
+
+        if (config.readOnly) {
+          args.push('--readOnly');
+        }
+
+        if (config.connectionString) {
+          args.push('--connectionString');
+          args.push(config.connectionString);
+        }
+
+        if (config.indexCheck) {
+          args.push('--indexCheck');
+        }
+      }
+
+      return {
+        command: "node",
+        args
+      };
+    }

package/CONTRIBUTING.md

@@ -55,7 +55,7 @@ This project implements a Model Context Protocol (MCP) server for MongoDB and Mo
    npm run inspect
    ```
 
-4. Commit your changes with a descriptive commit message
+4. Commit your changes using [conventional commits](https://www.conventionalcommits.org/en/v1.0.0/) format.
 
 ## Adding tests to the MCP Server
 

package/Dockerfile

@@ -0,0 +1,10 @@
+FROM node:22-alpine
+ARG VERSION=latest
+RUN addgroup -S mcp && adduser -S mcp -G mcp
+RUN npm install -g mongodb-mcp-server@${VERSION}
+USER mcp
+WORKDIR /home/mcp
+ENTRYPOINT ["mongodb-mcp-server"]
+LABEL maintainer="MongoDB Inc <info@mongodb.com>"
+LABEL description="MongoDB MCP Server"
+LABEL version=${VERSION}

package/README.md

@@ -1,3 +1,7 @@
+[![Install in VS Code](https://img.shields.io/badge/VS_Code-Install_Server-0098FF?logo=data:image/svg%2bxml;base64,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)](https://insiders.vscode.dev/redirect/mcp/install?name=mongodb&inputs=%5B%7B%22id%22%3A%22connection_string%22%2C%22type%22%3A%22promptString%22%2C%22description%22%3A%22MongoDB%20connection%20string%22%7D%5D&config=%7B%22command%22%3A%22npx%22%2C%22args%22%3A%5B%22-y%22%2C%22mongodb-mcp-server%22%5D%2C%22env%22%3A%7B%22MDB_MCP_CONNECTION_STRING%22%3A%22%24%7Binput%3Aconnection_string%7D%22%7D%7D)
+[![Install in Cursor](https://img.shields.io/badge/Cursor-Install_Server-1e1e1e?logo=data:image/svg%2bxml;base64,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)](https://cursor.com/install-mcp?name=MongoDB&config=eyJjb21tYW5kIjoibnB4IC15IG1vbmdvZGItbWNwLXNlcnZlciJ9)
+[![View on Smithery](https://smithery.ai/badge/@mongodb-js/mongodb-mcp-server)](https://smithery.ai/server/@mongodb-js/mongodb-mcp-server)
+
 # MongoDB MCP Server
 
 A Model Context Protocol server for interacting with MongoDB Databases and MongoDB Atlas.
@@ -22,7 +26,7 @@ A Model Context Protocol server for interacting with MongoDB Databases and Mongo
 
 ## Prerequisites
 
-- Node.js (v20 or later)
+- Node.js (v20.10.0 or later)
 
 ```shell
 node -v
@@ -36,6 +40,8 @@ node -v
 
 ### Quick Start
 
+> **Note:** When using Atlas API credentials, be sure to assign only the minimum required permissions to your service account. See [Atlas API Permissions](#atlas-api-permissions) for details.
+
 Most MCP clients require a configuration file to be created or modified to add the MCP server.
 
 Note: The configuration file syntax can be different across clients. Please refer to the following links for the latest expected syntax:
@@ -58,13 +64,15 @@ You can pass your connection string via args, make sure to use a valid username
         "-y",
         "mongodb-mcp-server",
         "--connectionString",
-        "mongodb+srv://username:password@cluster.mongodb.net/myDatabase"
+        "mongodb://localhost:27017/myDatabase"
       ]
     }
   }
 }
 ```
 
+NOTE: The connection string can be configured to connect to any MongoDB cluster, whether it's a local instance or an Atlas cluster.
+
 #### Option 2: Atlas API credentials args
 
 Use your Atlas API Service Accounts credentials. Must follow all the steps in [Atlas API Access](#atlas-api-access) section.
@@ -87,7 +95,7 @@ Use your Atlas API Service Accounts credentials. Must follow all the steps in [A
 }
 ```
 
-### Option 3: Standalone Service using command arguments
+#### Option 3: Standalone Service using command arguments
 
 Start Server using npx command:
 
@@ -109,6 +117,95 @@ You can use environment variables in the config file or set them and run the ser
 - Connection String via environment variables in the MCP file [example](#connection-string-with-environment-variables)
 - Atlas API credentials via environment variables in the MCP file [example](#atlas-api-credentials-with-environment-variables)
 
+#### Option 5: Using Docker
+
+You can run the MongoDB MCP Server in a Docker container, which provides isolation and doesn't require a local Node.js installation.
+
+#### Run with Environment Variables
+
+You may provide either a MongoDB connection string OR Atlas API credentials:
+
+##### Option A: No configuration
+
+```shell
+docker run --rm -i \
+  mongodb/mongodb-mcp-server:latest
+```
+
+##### Option B: With MongoDB connection string
+
+```shell
+docker run --rm -i \
+  -e MDB_MCP_CONNECTION_STRING="mongodb+srv://username:password@cluster.mongodb.net/myDatabase" \
+  mongodb/mongodb-mcp-server:latest
+```
+
+##### Option C: With Atlas API credentials
+
+```shell
+docker run --rm -i \
+  -e MDB_MCP_API_CLIENT_ID="your-atlas-service-accounts-client-id" \
+  -e MDB_MCP_API_CLIENT_SECRET="your-atlas-service-accounts-client-secret" \
+  mongodb/mongodb-mcp-server:latest
+```
+
+##### Docker in MCP Configuration File
+
+Without options:
+
+```json
+{
+  "mcpServers": {
+    "MongoDB": {
+      "command": "docker",
+      "args": ["run", "--rm", "-i", "mongodb/mongodb-mcp-server:latest"]
+    }
+  }
+}
+```
+
+With connection string:
+
+```json
+{
+  "mcpServers": {
+    "MongoDB": {
+      "command": "docker",
+      "args": [
+        "run",
+        "--rm",
+        "-i",
+        "-e",
+        "MDB_MCP_CONNECTION_STRING=mongodb+srv://username:password@cluster.mongodb.net/myDatabase",
+        "mongodb/mongodb-mcp-server:latest"
+      ]
+    }
+  }
+}
+```
+
+With Atlas API credentials:
+
+```json
+{
+  "mcpServers": {
+    "MongoDB": {
+      "command": "docker",
+      "args": [
+        "run",
+        "--rm",
+        "-i",
+        "-e",
+        "MDB_MCP_API_CLIENT_ID=your-atlas-service-accounts-client-id",
+        "-e",
+        "MDB_MCP_API_CLIENT_SECRET=your-atlas-service-accounts-client-secret",
+        "mongodb/mongodb-mcp-server:latest"
+      ]
+    }
+  }
+}
+```
+
 ## 🛠️ Supported Tools
 
 ### Tool List
@@ -125,7 +222,8 @@ You can use environment variables in the config file or set them and run the ser
 - `atlas-inspect-access-list` - Inspect IP/CIDR ranges with access to MongoDB Atlas clusters
 - `atlas-create-access-list` - Configure IP/CIDR access list for MongoDB Atlas clusters
 - `atlas-list-db-users` - List MongoDB Atlas database users
-- `atlas-create-db-user` - List MongoDB Atlas database users
+- `atlas-create-db-user` - Creates a MongoDB Atlas database user
+- `atlas-list-alerts` - List MongoDB Atlas Alerts for a Project
 
 NOTE: atlas tools are only available when you set credentials on [configuration](#configuration) section.
 
@@ -161,15 +259,16 @@ The MongoDB MCP Server can be configured using multiple methods, with the follow
 
 ### Configuration Options
 
-| Option             | Description                                                                                                           |
-| ------------------ | --------------------------------------------------------------------------------------------------------------------- |
-| `apiClientId`      | Atlas API client ID for authentication                                                                                |
-| `apiClientSecret`  | Atlas API client secret for authentication                                                                            |
-| `connectionString` | MongoDB connection string for direct database connections (optional users may choose to inform it on every tool call) |
-| `logPath`          | Folder to store logs                                                                                                  |
-| `disabledTools`    | An array of tool names, operation types, and/or categories of tools that will be disabled                             |
-| `readOnly`         | When set to true, only allows read and metadata operation types, disabling create/update/delete operations            |
-| `telemetry`        | When set to disabled, disables telemetry collection                                                                   |
+| Option             | Description                                                                                                                                                   |
+| ------------------ | ------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| `apiClientId`      | Atlas API client ID for authentication. Required for running Atlas tools.                                                                                     |
+| `apiClientSecret`  | Atlas API client secret for authentication. Required for running Atlas tools.                                                                                 |
+| `connectionString` | MongoDB connection string for direct database connections. Optional, if not set, you'll need to call the `connect` tool before interacting with MongoDB data. |
+| `logPath`          | Folder to store logs.                                                                                                                                         |
+| `disabledTools`    | An array of tool names, operation types, and/or categories of tools that will be disabled.                                                                    |
+| `readOnly`         | When set to true, only allows read and metadata operation types, disabling create/update/delete operations.                                                   |
+| `indexCheck`       | When set to true, enforces that query operations must use an index, rejecting queries that perform a collection scan.                                         |
+| `telemetry`        | When set to disabled, disables telemetry collection.                                                                                                          |
 
 #### Log Path
 
@@ -214,6 +313,19 @@ You can enable read-only mode using:
 
 When read-only mode is active, you'll see a message in the server logs indicating which tools were prevented from registering due to this restriction.
 
+#### Index Check Mode
+
+The `indexCheck` configuration option allows you to enforce that query operations must use an index. When enabled, queries that perform a collection scan will be rejected to ensure better performance.
+
+This is useful for scenarios where you want to ensure that database queries are optimized.
+
+You can enable index check mode using:
+
+- **Environment variable**: `export MDB_MCP_INDEX_CHECK=true`
+- **Command-line argument**: `--indexCheck`
+
+When index check mode is active, you'll see an error message if a query is rejected due to not using an index.
+
 #### Telemetry
 
 The `telemetry` configuration option allows you to disable telemetry collection. When enabled, the MCP server will collect usage data and send it to MongoDB.
@@ -228,13 +340,16 @@ You can disable telemetry using:
 
 To use the Atlas API tools, you'll need to create a service account in MongoDB Atlas:
 
+> **ℹ️ Note:** For a detailed breakdown of the minimum required permissions for each Atlas operation, see the [Atlas API Permissions](#atlas-api-permissions) section below.
+
 1. **Create a Service Account:**
 
    - Log in to MongoDB Atlas at [cloud.mongodb.com](https://cloud.mongodb.com)
    - Navigate to Access Manager > Organization Access
    - Click Add New > Applications > Service Accounts
    - Enter name, description and expiration for your service account (e.g., "MCP, MCP Server Access, 7 days")
-   - Select appropriate permissions (for full access, use Organization Owner)
+   - **Assign only the minimum permissions needed for your use case.**
+     - See [Atlas API Permissions](#atlas-api-permissions) for details.
    - Click "Create"
 
 To learn more about Service Accounts, check the [MongoDB Atlas documentation](https://www.mongodb.com/docs/atlas/api/service-accounts-overview/).
@@ -251,6 +366,26 @@ To learn more about Service Accounts, check the [MongoDB Atlas documentation](ht
 4. **Configure the MCP Server:**
    - Use one of the configuration methods below to set your `apiClientId` and `apiClientSecret`
 
+### Atlas API Permissions
+
+> **Security Warning:** Granting the Organization Owner role is rarely necessary and can be a security risk. Assign only the minimum permissions needed for your use case.
+
+#### Quick Reference: Required roles per operation
+
+| What you want to do                  | Safest Role to Assign (where)           |
+| ------------------------------------ | --------------------------------------- |
+| List orgs/projects                   | Org Member or Org Read Only (Org)       |
+| Create new projects                  | Org Project Creator (Org)               |
+| View clusters/databases in a project | Project Read Only (Project)             |
+| Create/manage clusters in a project  | Project Cluster Manager (Project)       |
+| Manage project access lists          | Project IP Access List Admin (Project)  |
+| Manage database users                | Project Database Access Admin (Project) |
+
+- **Prefer project-level roles** for most operations. Assign only to the specific projects you need to manage or view.
+- **Avoid Organization Owner** unless you require full administrative control over all projects and settings in the organization.
+
+For a full list of roles and their privileges, see the [Atlas User Roles documentation](https://www.mongodb.com/docs/atlas/reference/user-roles/#service-user-roles).
+
 ### Configuration Methods
 
 #### Environment Variables
@@ -309,7 +444,7 @@ export MDB_MCP_LOG_PATH="/path/to/logs"
 Pass configuration options as command-line arguments when starting the server:
 
 ```shell
-npx -y mongodb-mcp-server --apiClientId="your-atlas-service-accounts-client-id" --apiClientSecret="your-atlas-service-accounts-client-secret" --connectionString="mongodb+srv://username:password@cluster.mongodb.net/myDatabase" --logPath=/path/to/logs
+npx -y mongodb-mcp-server --apiClientId="your-atlas-service-accounts-client-id" --apiClientSecret="your-atlas-service-accounts-client-secret" --connectionString="mongodb+srv://username:password@cluster.mongodb.net/myDatabase" --logPath=/path/to/logs --readOnly --indexCheck
 ```
 
 #### MCP configuration file examples

package/dist/common/atlas/apiClient.js

@@ -7,7 +7,9 @@ export class ApiClient {
     constructor(options) {
         this.getAccessToken = async () => {
             if (this.oauth2Client && (!this.accessToken || this.accessToken.expired())) {
-                this.accessToken = await this.oauth2Client.getToken({});
+                this.accessToken = await this.oauth2Client.getToken({
+                    agent: this.options.userAgent,
+                });
             }
             return this.accessToken?.token.access_token;
         };
@@ -186,6 +188,13 @@ export class ApiClient {
             throw ApiClientError.fromError(response, error);
         }
     }
+    async listAlerts(options) {
+        const { data, error, response } = await this.client.GET("/api/atlas/v2/groups/{groupId}/alerts", options);
+        if (error) {
+            throw ApiClientError.fromError(response, error);
+        }
+        return data;
+    }
     async listClusters(options) {
         const { data, error, response } = await this.client.GET("/api/atlas/v2/groups/{groupId}/clusters", options);
         if (error) {

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package/dist/common/atlas/cluster.js

@@ -21,7 +21,7 @@ export function formatCluster(cluster) {
                 regionConfig.analyticsSpecs?.instanceSize,
         };
     });
-    const instanceSize = (regionConfigs.length <= 0 ? undefined : regionConfigs[0].instanceSize) || "UNKNOWN";
+    const instanceSize = regionConfigs[0]?.instanceSize ?? "UNKNOWN";
     const clusterInstanceType = instanceSize == "M0" ? "FREE" : "DEDICATED";
     return {
         name: cluster.name,

package/dist/common/atlas/cluster.js.map

@@ -1 +1 @@
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