mongodb-mcp-server 0.0.4

package/README.md

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+# MongoDB MCP Server
+
+A Model Context Protocol server for interacting with MongoDB Atlas. This project implements a Model Context Protocol (MCP) server enabling AI assistants to interact with MongoDB Atlas resources through natural language.
+
+> [!CAUTION]
+> Do not use this in production. This is a work in progress and is not intended for production use. It is meant for demonstration purposes only.
+
+## 📚 Table of Contents
+
+- [🚀 Getting Started](#getting-started)
+  - [Prerequisites](#prerequisites)
+  - [Installation](#installation)
+    - [VSCode](#vscode)
+    - [Claude Desktop](#claude)
+- [🛠️ Supported Tools](#supported-tools)
+  - [Tool List](#tool-list)
+- [⚙️ Configuration](#configuration)
+  - [Configuration Options](#configuration-options)
+  - [Atlas API Access](#atlas-api-access)
+  - [Configuration Methods](#configuration-methods)
+- [👩‍💻 Client Integration](#client-integration)
+  - [VSCode](#vscode)
+  - [Claude](#claude)
+- [🤝 Contributing](#contributing)
+
+## Prerequisites
+
+- Node.js (v20 or later)
+- MongoDB Atlas account
+
+## Installation
+
+### VSCode
+
+Prerequisites:
+
+- Node.js v20.x
+
+Step 1: Add the mcp server to VSCode configuration
+
+- Press `Cmd + Shift + P` and type `MCP: Add MCP Server` and select it.
+- Select command (Stdio).
+- Input command `npx -y mongodb-mcp-server`.
+- Choose between user / workspace
+- Add arguments to the file
+
+Note: the file should look like:
+
+```
+{
+    "servers": {
+        "MongoDB": {
+            "type": "stdio",
+            "command": "npx",
+            "args": [
+                "-y",
+                "mongodb-mcp-server"
+            ]
+        }
+    }
+}
+```
+
+Notes: You can configure the server with atlas access, make sure to follow configuration section for more details.
+
+Step 2: Try talking to github copilot
+
+- Can you connect to my mongodb instance?
+
+### Claude Desktop
+
+Step 1: Install claude and login
+
+Note: follow instructions at https://claude.ai/download
+
+Step 2: Launch Claude Settings -> Developer -> Edit Config
+
+Paste the mcp server configuration into the file
+
+```json
+{
+  "mcpServers": {
+    "MongoDB": {
+      "command": "npx",
+      "args": ["-y", "mongodb-mcp-server"]
+    }
+  }
+}
+```
+
+Step 3: Close and Relaunch Claude Desktop and click on the hammer icon, the MongoDB MCP server should be detected.
+
+You may experiment asking `Can you connect to my mongodb instance?`.
+
+## 🛠️ Supported Tools
+
+### Tool List
+
+#### MongoDB Atlas Tools
+
+- `atlas-list-orgs` - Lists MongoDB Atlas organizations
+- `atlas-list-projects` - Lists MongoDB Atlas projects
+- `atlas-create-project` - Creates a new MongoDB Atlas project
+- `atlas-list-clusters` - Lists MongoDB Atlas clusters
+- `atlas-inspect-cluster` - Inspect a specific MongoDB Atlas cluster
+- `atlas-create-free-cluster` - Create a free MongoDB Atlas cluster
+- `atlas-inspect-access-list` - Inspect IP/CIDR ranges with access to MongoDB Atlas clusters
+- `atlas-create-access-list` - Configure IP/CIDR access list for MongoDB Atlas clusters
+- `atlas-list-db-users` - List MongoDB Atlas database users
+- `atlas-create-db-user` - List MongoDB Atlas database users
+
+#### MongoDB Database Tools
+
+- `connect` - Connect to a MongoDB instance
+- `find` - Run a find query against a MongoDB collection
+- `aggregate` - Run an aggregation against a MongoDB collection
+- `count` - Get the number of documents in a MongoDB collection
+- `insert-one` - Insert a single document into a MongoDB collection
+- `insert-many` - Insert multiple documents into a MongoDB collection
+- `create-index` - Create an index for a MongoDB collection
+- `update-one` - Update a single document in a MongoDB collection
+- `update-many` - Update multiple documents in a MongoDB collection
+- `rename-collection` - Rename a MongoDB collection
+- `delete-one` - Delete a single document from a MongoDB collection
+- `delete-many` - Delete multiple documents from a MongoDB collection
+- `drop-collection` - Remove a collection from a MongoDB database
+- `drop-database` - Remove a MongoDB database
+- `list-databases` - List all databases for a MongoDB connection
+- `list-collections` - List all collections for a given database
+- `collection-indexes` - Describe the indexes for a collection
+- `collection-schema` - Describe the schema for a collection
+- `collection-storage-size` - Get the size of a collection in MB
+- `db-stats` - Return statistics about a MongoDB database
+
+## Configuration
+
+The MongoDB MCP Server can be configured using multiple methods, with the following precedence (highest to lowest):
+
+1. Command-line arguments
+2. Environment variables
+
+### Configuration Options
+
+| Option             | Description                                                                                                           |
+| ------------------ | --------------------------------------------------------------------------------------------------------------------- |
+| `apiClientId`      | Atlas API client ID for authentication                                                                                |
+| `apiClientSecret`  | Atlas API client secret for authentication                                                                            |
+| `connectionString` | MongoDB connection string for direct database connections (optional users may choose to inform it on every tool call) |
+| `logPath`          | Folder to store logs                                                                                                  |
+| `disabledTools`    | An array of tool names, operation types, and/or categories of tools that will be disabled.                            |
+
+#### `logPath`
+
+Default log location is as follows:
+
+- Windows: `%LOCALAPPDATA%\mongodb\mongodb-mcp\.app-logs`
+- macOS/Linux: `~/.mongodb/mongodb-mcp/.app-logs`
+
+#### Disabled Tools
+
+You can disable specific tools or categories of tools by using the `disabledTools` option. This option accepts an array of strings,
+where each string can be a tool name, operation type, or category.
+
+The way the array is constructed depends on the type of configuration method you use:
+
+- For **environment variable** configuration, use a comma-separated string: `export MDB_MCP_DISABLED_TOOLS="create,update,delete,atlas,collectionSchema"`.
+- For **command-line argument** configuration, use a space-separated string: `--disabledTools create update delete atlas collectionSchema`.
+
+Categories of tools:
+
+- `atlas` - MongoDB Atlas tools, such as list clusters, create cluster, etc.
+- `mongodb` - MongoDB database tools, such as find, aggregate, etc.
+
+Operation types:
+
+- `create` - Tools that create resources, such as create cluster, insert document, etc.
+- `update` - Tools that update resources, such as update document, rename collection, etc.
+- `delete` - Tools that delete resources, such as delete document, drop collection, etc.
+- `read` - Tools that read resources, such as find, aggregate, list clusters, etc.
+- `metadata` - Tools that read metadata, such as list databases, list collections, collection schema, etc.
+
+### Atlas API Access
+
+To use the Atlas API tools, you'll need to create a service account in MongoDB Atlas:
+
+1. **Create a Service Account:**
+
+   - Log in to MongoDB Atlas at [cloud.mongodb.com](https://cloud.mongodb.com)
+   - Navigate to Access Manager > Organization Access
+   - Click Add New > Applications > Service Accounts
+   - Enter name, description and expiration for your service account (e.g., "MCP, MCP Server Access, 7 days")
+   - Select appropriate permissions (for full access, use Organization Owner)
+   - Click "Create"
+
+2. **Save Client Credentials:**
+
+   - After creation, you'll be shown the Client ID and Client Secret
+   - **Important:** Copy and save the Client Secret immediately as it won't be displayed again
+
+3. **Add Access List Entry (Optional but recommended):**
+
+   - Add your IP address to the API access list
+
+4. **Configure the MCP Server:**
+   - Use one of the configuration methods below to set your `apiClientId` and `apiClientSecret`
+
+### Configuration Methods
+
+#### Environment Variables
+
+Set environment variables with the prefix `MDB_MCP_` followed by the option name in uppercase with underscores:
+
+```shell
+# Set Atlas API credentials
+export MDB_MCP_API_CLIENT_ID="your-atlas-client-id"
+export MDB_MCP_API_CLIENT_SECRET="your-atlas-client-secret"
+
+# Set a custom MongoDB connection string
+export MDB_MCP_CONNECTION_STRING="mongodb+srv://username:password@cluster.mongodb.net/myDatabase"
+
+export MDB_MCP_LOG_PATH="/path/to/logs"
+```
+
+#### Command-Line Arguments
+
+Pass configuration options as command-line arguments when starting the server:
+
+```shell
+npx -y mongodb-mcp-server --apiClientId="your-atlas-client-id" --apiClientSecret="your-atlas-client-secret" --connectionString="mongodb+srv://username:password@cluster.mongodb.net/myDatabase" --logPath=/path/to/logs
+```
+
+## 🤝 Contributing
+
+Interested in contributing? Great! Please check our [Contributing Guide](CONTRIBUTING.md) for guidelines on code contributions, standards, adding new tools, and troubleshooting information.

package/dist/common/atlas/apiClient.js

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+import config from "../../config.js";
+import createClient from "openapi-fetch";
+import { ClientCredentials } from "simple-oauth2";
+import { ApiClientError } from "./apiClientError.js";
+const ATLAS_API_VERSION = "2025-03-12";
+export class ApiClient {
+    constructor(options) {
+        this.getAccessToken = async () => {
+            if (this.oauth2Client && (!this.accessToken || this.accessToken.expired())) {
+                this.accessToken = await this.oauth2Client.getToken({});
+            }
+            return this.accessToken?.token.access_token;
+        };
+        this.authMiddleware = {
+            onRequest: async ({ request, schemaPath }) => {
+                if (schemaPath.startsWith("/api/private/unauth") || schemaPath.startsWith("/api/oauth")) {
+                    return undefined;
+                }
+                try {
+                    const accessToken = await this.getAccessToken();
+                    request.headers.set("Authorization", `Bearer ${accessToken}`);
+                    return request;
+                }
+                catch {
+                    // ignore not availble tokens, API will return 401
+                }
+            },
+        };
+        this.errorMiddleware = {
+            async onResponse({ response }) {
+                if (!response.ok) {
+                    throw await ApiClientError.fromResponse(response);
+                }
+            },
+        };
+        this.options = {
+            ...options,
+            baseUrl: options?.baseUrl || "https://cloud.mongodb.com/",
+            userAgent: options?.userAgent ||
+                `AtlasMCP/${config.version} (${process.platform}; ${process.arch}; ${process.env.HOSTNAME || "unknown"})`,
+        };
+        this.client = createClient({
+            baseUrl: this.options.baseUrl,
+            headers: {
+                "User-Agent": this.options.userAgent,
+                Accept: `application/vnd.atlas.${ATLAS_API_VERSION}+json`,
+            },
+        });
+        if (this.options.credentials?.clientId && this.options.credentials?.clientSecret) {
+            this.oauth2Client = new ClientCredentials({
+                client: {
+                    id: this.options.credentials.clientId,
+                    secret: this.options.credentials.clientSecret,
+                },
+                auth: {
+                    tokenHost: this.options.baseUrl,
+                    tokenPath: "/api/oauth/token",
+                },
+            });
+            this.client.use(this.authMiddleware);
+        }
+        this.client.use(this.errorMiddleware);
+    }
+    async getIpInfo() {
+        const accessToken = await this.getAccessToken();
+        const endpoint = "api/private/ipinfo";
+        const url = new URL(endpoint, this.options.baseUrl);
+        const response = await fetch(url, {
+            method: "GET",
+            headers: {
+                Accept: "application/json",
+                Authorization: `Bearer ${accessToken}`,
+                "User-Agent": this.options.userAgent,
+            },
+        });
+        if (!response.ok) {
+            throw await ApiClientError.fromResponse(response);
+        }
+        return (await response.json());
+    }
+    // DO NOT EDIT. This is auto-generated code.
+    async listClustersForAllProjects(options) {
+        const { data } = await this.client.GET("/api/atlas/v2/clusters", options);
+        return data;
+    }
+    async listProjects(options) {
+        const { data } = await this.client.GET("/api/atlas/v2/groups", options);
+        return data;
+    }
+    async createProject(options) {
+        const { data } = await this.client.POST("/api/atlas/v2/groups", options);
+        return data;
+    }
+    async deleteProject(options) {
+        await this.client.DELETE("/api/atlas/v2/groups/{groupId}", options);
+    }
+    async getProject(options) {
+        const { data } = await this.client.GET("/api/atlas/v2/groups/{groupId}", options);
+        return data;
+    }
+    async listProjectIpAccessLists(options) {
+        const { data } = await this.client.GET("/api/atlas/v2/groups/{groupId}/accessList", options);
+        return data;
+    }
+    async createProjectIpAccessList(options) {
+        const { data } = await this.client.POST("/api/atlas/v2/groups/{groupId}/accessList", options);
+        return data;
+    }
+    async deleteProjectIpAccessList(options) {
+        await this.client.DELETE("/api/atlas/v2/groups/{groupId}/accessList/{entryValue}", options);
+    }
+    async listClusters(options) {
+        const { data } = await this.client.GET("/api/atlas/v2/groups/{groupId}/clusters", options);
+        return data;
+    }
+    async createCluster(options) {
+        const { data } = await this.client.POST("/api/atlas/v2/groups/{groupId}/clusters", options);
+        return data;
+    }
+    async deleteCluster(options) {
+        await this.client.DELETE("/api/atlas/v2/groups/{groupId}/clusters/{clusterName}", options);
+    }
+    async getCluster(options) {
+        const { data } = await this.client.GET("/api/atlas/v2/groups/{groupId}/clusters/{clusterName}", options);
+        return data;
+    }
+    async listDatabaseUsers(options) {
+        const { data } = await this.client.GET("/api/atlas/v2/groups/{groupId}/databaseUsers", options);
+        return data;
+    }
+    async createDatabaseUser(options) {
+        const { data } = await this.client.POST("/api/atlas/v2/groups/{groupId}/databaseUsers", options);
+        return data;
+    }
+    async deleteDatabaseUser(options) {
+        await this.client.DELETE("/api/atlas/v2/groups/{groupId}/databaseUsers/{databaseName}/{username}", options);
+    }
+    async listOrganizations(options) {
+        const { data } = await this.client.GET("/api/atlas/v2/orgs", options);
+        return data;
+    }
+    async listOrganizationProjects(options) {
+        const { data } = await this.client.GET("/api/atlas/v2/orgs/{orgId}/groups", options);
+        return data;
+    }
+}
+//# sourceMappingURL=apiClient.js.map

package/dist/common/atlas/apiClient.js.map

@@ -0,0 +1 @@
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package/dist/common/atlas/apiClientError.js

@@ -0,0 +1,17 @@
+export class ApiClientError extends Error {
+    constructor(message, response = undefined) {
+        super(message);
+        this.name = "ApiClientError";
+        this.response = response;
+    }
+    static async fromResponse(response, message = `error calling Atlas API`) {
+        try {
+            const text = await response.text();
+            return new ApiClientError(`${message}: [${response.status} ${response.statusText}] ${text}`, response);
+        }
+        catch {
+            return new ApiClientError(`${message}: ${response.status} ${response.statusText}`, response);
+        }
+    }
+}
+//# sourceMappingURL=apiClientError.js.map

package/dist/common/atlas/apiClientError.js.map

@@ -0,0 +1 @@
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package/dist/config.js

@@ -0,0 +1,85 @@
+import path from "path";
+import os from "os";
+import argv from "yargs-parser";
+import packageJson from "../package.json" with { type: "json" };
+const defaults = {
+    logPath: getLogPath(),
+    connectOptions: {
+        readConcern: "local",
+        readPreference: "secondaryPreferred",
+        writeConcern: "majority",
+        timeoutMS: 30000,
+    },
+    disabledTools: [],
+};
+const mergedUserConfig = {
+    ...defaults,
+    ...getEnvConfig(),
+    ...getCliConfig(),
+};
+const config = {
+    ...mergedUserConfig,
+    version: packageJson.version,
+};
+export default config;
+function getLogPath() {
+    const localDataPath = process.platform === "win32"
+        ? path.join(process.env.LOCALAPPDATA || process.env.APPDATA || os.homedir(), "mongodb")
+        : path.join(os.homedir(), ".mongodb");
+    const logPath = path.join(localDataPath, "mongodb-mcp", ".app-logs");
+    return logPath;
+}
+// Gets the config supplied by the user as environment variables. The variable names
+// are prefixed with `MDB_MCP_` and the keys match the UserConfig keys, but are converted
+// to SNAKE_UPPER_CASE.
+function getEnvConfig() {
+    function setValue(obj, path, value) {
+        const currentField = path.shift();
+        if (!currentField) {
+            return;
+        }
+        if (path.length === 0) {
+            const numberValue = Number(value);
+            if (!isNaN(numberValue)) {
+                obj[currentField] = numberValue;
+                return;
+            }
+            const booleanValue = value.toLocaleLowerCase();
+            if (booleanValue === "true" || booleanValue === "false") {
+                obj[currentField] = booleanValue === "true";
+                return;
+            }
+            // Try to parse an array of values
+            if (value.indexOf(",") !== -1) {
+                obj[currentField] = value.split(",").map((v) => v.trim());
+                return;
+            }
+            obj[currentField] = value;
+            return;
+        }
+        if (!obj[currentField]) {
+            obj[currentField] = {};
+        }
+        setValue(obj[currentField], path, value);
+    }
+    const result = {};
+    const mcpVariables = Object.entries(process.env).filter(([key, value]) => value !== undefined && key.startsWith("MDB_MCP_"));
+    for (const [key, value] of mcpVariables) {
+        const fieldPath = key
+            .replace("MDB_MCP_", "")
+            .split(".")
+            .map((part) => SNAKE_CASE_toCamelCase(part));
+        setValue(result, fieldPath, value);
+    }
+    return result;
+}
+function SNAKE_CASE_toCamelCase(str) {
+    return str.toLowerCase().replace(/([-_][a-z])/g, (group) => group.toUpperCase().replace("_", ""));
+}
+// Reads the cli args and parses them into a UserConfig object.
+function getCliConfig() {
+    return argv(process.argv.slice(2), {
+        array: ["disabledTools"],
+    });
+}
+//# sourceMappingURL=config.js.map

package/dist/config.js.map

@@ -0,0 +1 @@
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package/dist/errors.js

@@ -0,0 +1,12 @@
+export var ErrorCodes;
+(function (ErrorCodes) {
+    ErrorCodes[ErrorCodes["NotConnectedToMongoDB"] = 1000000] = "NotConnectedToMongoDB";
+    ErrorCodes[ErrorCodes["InvalidParams"] = 1000001] = "InvalidParams";
+})(ErrorCodes || (ErrorCodes = {}));
+export class MongoDBError extends Error {
+    constructor(code, message) {
+        super(message);
+        this.code = code;
+    }
+}
+//# sourceMappingURL=errors.js.map

package/dist/errors.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"errors.js","sourceRoot":"","sources":["../src/errors.ts"],"names":[],"mappings":"AAAA,MAAM,CAAN,IAAY,UAGX;AAHD,WAAY,UAAU;IAClB,mFAAiC,CAAA;IACjC,mEAAyB,CAAA;AAC7B,CAAC,EAHW,UAAU,KAAV,UAAU,QAGrB;AAED,MAAM,OAAO,YAAa,SAAQ,KAAK;IACnC,YACW,IAAgB,EACvB,OAAe;QAEf,KAAK,CAAC,OAAO,CAAC,CAAC;QAHR,SAAI,GAAJ,IAAI,CAAY;IAI3B,CAAC;CACJ"}

package/dist/index.js

@@ -0,0 +1,26 @@
+#!/usr/bin/env node
+import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
+import logger from "./logger.js";
+import { mongoLogId } from "mongodb-log-writer";
+import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
+import config from "./config.js";
+import { Session } from "./session.js";
+import { Server } from "./server.js";
+try {
+    const session = new Session();
+    const mcpServer = new McpServer({
+        name: "MongoDB Atlas",
+        version: config.version,
+    });
+    const server = new Server({
+        mcpServer,
+        session,
+    });
+    const transport = new StdioServerTransport();
+    await server.connect(transport);
+}
+catch (error) {
+    logger.emergency(mongoLogId(1000004), "server", `Fatal error running server: ${error}`);
+    process.exit(1);
+}
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
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package/dist/logger.js

@@ -0,0 +1,97 @@
+import fs from "fs/promises";
+import { MongoLogManager } from "mongodb-log-writer";
+import config from "./config.js";
+import redact from "mongodb-redact";
+class LoggerBase {
+    info(id, context, message) {
+        this.log("info", id, context, message);
+    }
+    error(id, context, message) {
+        this.log("error", id, context, message);
+    }
+    debug(id, context, message) {
+        this.log("debug", id, context, message);
+    }
+    notice(id, context, message) {
+        this.log("notice", id, context, message);
+    }
+    warning(id, context, message) {
+        this.log("warning", id, context, message);
+    }
+    critical(id, context, message) {
+        this.log("critical", id, context, message);
+    }
+    alert(id, context, message) {
+        this.log("alert", id, context, message);
+    }
+    emergency(id, context, message) {
+        this.log("emergency", id, context, message);
+    }
+}
+class ConsoleLogger extends LoggerBase {
+    log(level, id, context, message) {
+        message = redact(message);
+        console.error(`[${level.toUpperCase()}] ${id.__value} - ${context}: ${message}`);
+    }
+}
+class Logger extends LoggerBase {
+    constructor(logWriter, server) {
+        super();
+        this.logWriter = logWriter;
+        this.server = server;
+    }
+    log(level, id, context, message) {
+        message = redact(message);
+        const mongoDBLevel = this.mapToMongoDBLogLevel(level);
+        this.logWriter[mongoDBLevel]("MONGODB-MCP", id, context, message);
+        void this.server.server.sendLoggingMessage({
+            level,
+            data: `[${context}]: ${message}`,
+        });
+    }
+    mapToMongoDBLogLevel(level) {
+        switch (level) {
+            case "info":
+                return "info";
+            case "warning":
+                return "warn";
+            case "error":
+                return "error";
+            case "notice":
+            case "debug":
+                return "debug";
+            case "critical":
+            case "alert":
+            case "emergency":
+                return "fatal";
+            default:
+                return "info";
+        }
+    }
+}
+class ProxyingLogger extends LoggerBase {
+    constructor() {
+        super(...arguments);
+        this.internalLogger = new ConsoleLogger();
+    }
+    log(level, id, context, message) {
+        this.internalLogger.log(level, id, context, message);
+    }
+}
+const logger = new ProxyingLogger();
+export default logger;
+export async function initializeLogger(server) {
+    await fs.mkdir(config.logPath, { recursive: true });
+    const manager = new MongoLogManager({
+        directory: config.logPath,
+        retentionDays: 30,
+        onwarn: console.warn,
+        onerror: console.error,
+        gzip: false,
+        retentionGB: 1,
+    });
+    await manager.cleanupOldLogFiles();
+    const logWriter = await manager.createLogWriter();
+    logger["internalLogger"] = new Logger(logWriter, server);
+}
+//# sourceMappingURL=logger.js.map

package/dist/logger.js.map

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