molstar 4.8.0 → 4.9.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +25 -0
- package/lib/apps/docking-viewer/viewport.d.ts +12 -12
- package/lib/apps/mesoscale-explorer/data/state.d.ts +35 -35
- package/lib/apps/mesoscale-explorer/ui/entities.d.ts +27 -27
- package/lib/apps/viewer/app.d.ts +6 -6
- package/lib/cli/chem-comp-dict/util.d.ts +1 -1
- package/lib/cli/cif2bcif/converter.d.ts +1 -1
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +12 -12
- package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +35 -35
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +27 -27
- package/lib/commonjs/apps/viewer/app.d.ts +6 -6
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +1 -1
- package/lib/commonjs/cli/cif2bcif/converter.d.ts +1 -1
- package/lib/commonjs/examples/domain-annotation-server/mapping.d.ts +1 -1
- package/lib/commonjs/examples/glb-export/index.d.ts +13 -0
- package/lib/commonjs/examples/glb-export/index.js +79 -0
- package/lib/commonjs/extensions/alpha-orbitals/collocation.d.ts +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.d.ts +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +2 -2
- package/lib/commonjs/extensions/anvil/behavior.d.ts +8 -8
- package/lib/commonjs/extensions/anvil/prop.d.ts +1 -1
- package/lib/commonjs/extensions/anvil/prop.js +25 -3
- package/lib/commonjs/extensions/anvil/representation.d.ts +25 -25
- package/lib/commonjs/extensions/anvil/representation.js +1 -1
- package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +9 -9
- package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +5 -5
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +6 -6
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +15 -15
- package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.d.ts +6 -6
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +15 -15
- package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -1
- package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +3 -3
- package/lib/commonjs/extensions/geo-export/stl-exporter.d.ts +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.d.ts +1 -1
- package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.d.ts +4 -4
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +12 -12
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
- package/lib/commonjs/extensions/mp4-export/encoder.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +10 -10
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +5 -5
- package/lib/commonjs/extensions/mvs/components/annotation-prop.d.ts +4 -4
- package/lib/commonjs/extensions/mvs/components/annotation-structure-component.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +20 -20
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +10 -10
- package/lib/commonjs/extensions/mvs/components/custom-tooltips-prop.d.ts +3 -3
- package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.d.ts +3 -3
- package/lib/commonjs/extensions/mvs/components/primitives.d.ts +54 -54
- package/lib/commonjs/extensions/mvs/components/selector.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +18 -18
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +25 -25
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +1 -1
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/preset.d.ts +6 -6
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +4 -0
- package/lib/commonjs/extensions/sb-ncbr/tunnels/actions.d.ts +3 -3
- package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.d.ts +6 -6
- package/lib/commonjs/extensions/sb-ncbr/tunnels/representation.d.ts +2 -2
- package/lib/commonjs/extensions/volumes-and-segmentations/transformers.d.ts +2 -2
- package/lib/commonjs/extensions/wwpdb/ccd/representation.d.ts +15 -15
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +137 -136
- package/lib/commonjs/mol-canvas3d/canvas3d.js +7 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +48 -48
- package/lib/commonjs/mol-canvas3d/passes/background.d.ts +15 -15
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +58 -58
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +23 -23
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +2 -1
- package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
- package/lib/commonjs/mol-data/util/array.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +13 -3
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +5 -5
- package/lib/commonjs/mol-geo/geometry/transform-data.d.ts +1 -1
- package/lib/commonjs/mol-geo/primitive/polygon.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/grid3d.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/util.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +7 -3
- package/lib/commonjs/mol-io/common/io-buffer.d.ts +2 -2
- package/lib/commonjs/mol-io/common/msgpack/encode.d.ts +1 -1
- package/lib/commonjs/mol-io/common/typed-array.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.d.ts +1 -1
- package/lib/commonjs/mol-math/geometry/common.d.ts +1 -1
- package/lib/commonjs/mol-math/graph/inter-unit-graph.d.ts +4 -3
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js +24 -12
- package/lib/commonjs/mol-math/linear-algebra/3d/minimize-rmsd.d.ts +3 -3
- package/lib/commonjs/mol-math/misc.js +9 -4
- package/lib/commonjs/mol-model/structure/export/mmcif.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/mapping.d.ts +31 -0
- package/lib/commonjs/mol-model/structure/structure/mapping.js +65 -0
- package/lib/commonjs/mol-model/structure/structure/structure.d.ts +4 -15
- package/lib/commonjs/mol-model/structure/structure/structure.js +6 -24
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +5 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +8 -6
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +5 -4
- package/lib/commonjs/mol-model/structure/structure/util/principal-axes.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +10 -10
- package/lib/commonjs/mol-model-formats/structure/basic/util.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/util.js +2 -1
- package/lib/commonjs/mol-model-formats/structure/pdb/anisotropic.d.ts +6 -6
- package/lib/commonjs/mol-model-formats/structure/property/anisotropic.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +2 -0
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +17 -2
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +2 -2
- package/lib/commonjs/mol-model-props/common/custom-property.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.d.ts +2 -1
- package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +12 -3
- package/lib/commonjs/mol-model-props/computed/interactions/common.d.ts +2 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +5 -5
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +5 -5
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +15 -15
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +20 -20
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +8 -8
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +23 -23
- package/lib/commonjs/mol-plugin/config.d.ts +15 -15
- package/lib/commonjs/mol-plugin/util/substructure-parent-helper.js +1 -1
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +1 -1
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.js +1 -1
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +23 -23
- package/lib/commonjs/mol-plugin-state/actions/volume.d.ts +9 -9
- package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +5 -5
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +47 -47
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +21 -21
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +122 -122
- package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +26 -26
- package/lib/commonjs/mol-plugin-state/manager/snapshots.js +1 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +14 -14
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.d.ts +36 -36
- package/lib/commonjs/mol-plugin-state/objects.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +12 -12
- package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +22 -22
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +19 -19
- package/lib/commonjs/mol-plugin-state/transforms/volume.d.ts +4 -4
- package/lib/commonjs/mol-plugin-ui/state/tree.js +2 -1
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +5 -5
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +5 -5
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +5 -5
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +5 -5
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +5 -5
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +5 -5
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +5 -5
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +5 -5
- package/lib/commonjs/mol-repr/shape/representation.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/representation.js +3 -3
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +70 -35
- package/lib/commonjs/mol-repr/structure/complex-visual.js +17 -1
- package/lib/commonjs/mol-repr/structure/params.d.ts +40 -40
- package/lib/commonjs/mol-repr/structure/registry.d.ts +75 -73
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +18 -18
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +8 -4
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +22 -19
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +15 -2
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +18 -18
- package/lib/commonjs/mol-repr/structure/representation/line.js +9 -4
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +18 -15
- package/lib/commonjs/mol-repr/structure/representation/point.js +9 -2
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +15 -15
- package/lib/commonjs/mol-repr/structure/representation/spacefill.js +1 -1
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +40 -40
- package/lib/commonjs/mol-repr/structure/units-visual.js +1 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +9 -5
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +11 -7
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +132 -10
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +196 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +47 -5
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +125 -15
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +43 -5
- package/lib/commonjs/mol-repr/structure/visual/element-cross.js +85 -1
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +44 -6
- package/lib/commonjs/mol-repr/structure/visual/element-point.js +90 -4
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +20 -20
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +61 -12
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.js +169 -33
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +20 -20
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +5 -5
- package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +112 -5
- package/lib/commonjs/mol-repr/structure/visual/util/element.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/link.d.ts +2 -1
- package/lib/commonjs/mol-repr/structure/visual/util/link.js +7 -2
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.js +3 -2
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +15 -15
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +30 -30
- package/lib/commonjs/mol-repr/volume/registry.d.ts +20 -20
- package/lib/commonjs/mol-repr/volume/representation.d.ts +5 -5
- package/lib/commonjs/mol-repr/volume/segment.d.ts +25 -25
- package/lib/commonjs/mol-repr/volume/slice.d.ts +15 -15
- package/lib/commonjs/mol-repr/volume/util.d.ts +3 -3
- package/lib/commonjs/mol-state/state/selection.js +1 -1
- package/lib/commonjs/mol-state/tree/immutable.d.ts +1 -1
- package/lib/commonjs/mol-state/tree/immutable.js +1 -1
- package/lib/commonjs/mol-theme/color/cartoon.d.ts +478 -478
- package/lib/commonjs/mol-theme/color/element-symbol.d.ts +144 -144
- package/lib/commonjs/mol-theme/color/external-volume.d.ts +2 -2
- package/lib/commonjs/mol-theme/color/illustrative.d.ts +122 -122
- package/lib/commonjs/mol-theme/color.d.ts +374 -374
- package/lib/commonjs/mol-util/browser.js +2 -0
- package/lib/commonjs/mol-util/clip.d.ts +2 -2
- package/lib/commonjs/mol-util/data-source.d.ts +1 -1
- package/lib/commonjs/mol-util/nodejs-shims.js +1 -0
- package/lib/commonjs/mol-util/read.d.ts +2 -2
- package/lib/commonjs/mol-util/zip/inflate.d.ts +1 -1
- package/lib/commonjs/mol-util/zip/util.d.ts +16 -16
- package/lib/commonjs/mol-util/zip/zip.d.ts +8 -8
- package/lib/commonjs/servers/common/file-handle.d.ts +8 -1
- package/lib/commonjs/servers/common/file-handle.js +90 -1
- package/lib/commonjs/servers/common/google-cloud-storage.d.ts +14 -0
- package/lib/commonjs/servers/common/google-cloud-storage.js +51 -0
- package/lib/commonjs/servers/membrane-orientation/config.d.ts +60 -0
- package/lib/commonjs/servers/membrane-orientation/config.js +90 -0
- package/lib/commonjs/servers/membrane-orientation/server.d.ts +7 -0
- package/lib/commonjs/servers/membrane-orientation/server.js +61 -0
- package/lib/commonjs/servers/membrane-orientation/version.d.ts +6 -0
- package/lib/commonjs/servers/membrane-orientation/version.js +9 -0
- package/lib/commonjs/servers/membrane-orientation/web-api.d.ts +7 -0
- package/lib/commonjs/servers/membrane-orientation/web-api.js +98 -0
- package/lib/commonjs/servers/membrane-orientation/web-schema.d.ts +203 -0
- package/lib/commonjs/servers/membrane-orientation/web-schema.js +219 -0
- package/lib/commonjs/servers/model/config.js +2 -2
- package/lib/commonjs/servers/model/server/api-web.js +4 -4
- package/lib/commonjs/servers/model/server/structure-wrapper.js +1 -1
- package/lib/commonjs/servers/model/utils/fetch-retry.d.ts +5 -2
- package/lib/commonjs/servers/model/utils/fetch-retry.js +20 -3
- package/lib/commonjs/servers/model/utils/tar.d.ts +2 -2
- package/lib/commonjs/servers/plugin-state/index.js +1 -2
- package/lib/commonjs/servers/volume/common/data-format.d.ts +1 -1
- package/lib/commonjs/servers/volume/config.d.ts +5 -1
- package/lib/commonjs/servers/volume/config.js +3 -2
- package/lib/commonjs/servers/volume/pack/format.js +1 -4
- package/lib/commonjs/servers/volume/server/api.js +3 -4
- package/lib/commonjs/servers/volume/server/query/execute.js +16 -10
- package/lib/commonjs/servers/volume/server/web-api.js +3 -3
- package/lib/examples/domain-annotation-server/mapping.d.ts +1 -1
- package/lib/examples/glb-export/index.d.ts +13 -0
- package/lib/examples/glb-export/index.js +76 -0
- package/lib/extensions/alpha-orbitals/collocation.d.ts +1 -1
- package/lib/extensions/alpha-orbitals/gpu/compute.d.ts +2 -2
- package/lib/extensions/alpha-orbitals/transforms.d.ts +2 -2
- package/lib/extensions/anvil/behavior.d.ts +8 -8
- package/lib/extensions/anvil/prop.d.ts +1 -1
- package/lib/extensions/anvil/prop.js +25 -3
- package/lib/extensions/anvil/representation.d.ts +25 -25
- package/lib/extensions/anvil/representation.js +1 -1
- package/lib/extensions/assembly-symmetry/behavior.d.ts +9 -9
- package/lib/extensions/assembly-symmetry/representation.d.ts +5 -5
- package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +6 -6
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +15 -15
- package/lib/extensions/dnatco/ntc-tube/behavior.d.ts +6 -6
- package/lib/extensions/dnatco/ntc-tube/representation.d.ts +15 -15
- package/lib/extensions/geo-export/glb-exporter.d.ts +1 -1
- package/lib/extensions/geo-export/mesh-exporter.d.ts +3 -3
- package/lib/extensions/geo-export/stl-exporter.d.ts +1 -1
- package/lib/extensions/geo-export/usdz-exporter.d.ts +1 -1
- package/lib/extensions/meshes/mesh-streaming/transformers.d.ts +4 -4
- package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +12 -12
- package/lib/extensions/mp4-export/controls.d.ts +1 -1
- package/lib/extensions/mp4-export/encoder.d.ts +1 -1
- package/lib/extensions/mvs/components/annotation-label/representation.d.ts +10 -10
- package/lib/extensions/mvs/components/annotation-label/visual.d.ts +5 -5
- package/lib/extensions/mvs/components/annotation-prop.d.ts +4 -4
- package/lib/extensions/mvs/components/annotation-structure-component.d.ts +1 -1
- package/lib/extensions/mvs/components/custom-label/representation.d.ts +20 -20
- package/lib/extensions/mvs/components/custom-label/visual.d.ts +10 -10
- package/lib/extensions/mvs/components/custom-tooltips-prop.d.ts +3 -3
- package/lib/extensions/mvs/components/multilayer-color-theme.d.ts +3 -3
- package/lib/extensions/mvs/components/primitives.d.ts +54 -54
- package/lib/extensions/mvs/components/selector.d.ts +1 -1
- package/lib/extensions/rcsb/validation-report/behavior.d.ts +18 -18
- package/lib/extensions/rcsb/validation-report/representation.d.ts +25 -25
- package/lib/extensions/sb-ncbr/partial-charges/color.js +1 -1
- package/lib/extensions/sb-ncbr/partial-charges/preset.d.ts +6 -6
- package/lib/extensions/sb-ncbr/partial-charges/property.js +4 -0
- package/lib/extensions/sb-ncbr/tunnels/actions.d.ts +3 -3
- package/lib/extensions/sb-ncbr/tunnels/behavior.d.ts +6 -6
- package/lib/extensions/sb-ncbr/tunnels/representation.d.ts +2 -2
- package/lib/extensions/volumes-and-segmentations/transformers.d.ts +2 -2
- package/lib/extensions/wwpdb/ccd/representation.d.ts +15 -15
- package/lib/mol-canvas3d/canvas3d.d.ts +137 -136
- package/lib/mol-canvas3d/canvas3d.js +7 -2
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +2 -2
- package/lib/mol-canvas3d/helper/helper.d.ts +48 -48
- package/lib/mol-canvas3d/passes/background.d.ts +15 -15
- package/lib/mol-canvas3d/passes/image.d.ts +58 -58
- package/lib/mol-canvas3d/passes/postprocessing.d.ts +23 -23
- package/lib/mol-canvas3d/passes/postprocessing.js +2 -1
- package/lib/mol-data/int/impl/sorted-array.d.ts +1 -1
- package/lib/mol-data/util/array.d.ts +1 -1
- package/lib/mol-geo/geometry/base.d.ts +5 -5
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +5 -5
- package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +5 -5
- package/lib/mol-geo/geometry/image/image.d.ts +5 -5
- package/lib/mol-geo/geometry/lines/lines.d.ts +5 -5
- package/lib/mol-geo/geometry/mesh/builder/tube.js +13 -3
- package/lib/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
- package/lib/mol-geo/geometry/mesh/mesh.d.ts +5 -5
- package/lib/mol-geo/geometry/points/points.d.ts +5 -5
- package/lib/mol-geo/geometry/spheres/spheres.d.ts +5 -5
- package/lib/mol-geo/geometry/text/text.d.ts +5 -5
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +5 -5
- package/lib/mol-geo/geometry/transform-data.d.ts +1 -1
- package/lib/mol-geo/primitive/polygon.d.ts +1 -1
- package/lib/mol-gl/compute/grid3d.d.ts +1 -1
- package/lib/mol-gl/compute/util.d.ts +2 -2
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/mol-gl/shader/image.frag.js +7 -3
- package/lib/mol-io/common/io-buffer.d.ts +2 -2
- package/lib/mol-io/common/msgpack/encode.d.ts +1 -1
- package/lib/mol-io/common/typed-array.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +2 -2
- package/lib/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/mol-io/writer/cif/encoder/binary.d.ts +1 -1
- package/lib/mol-math/geometry/common.d.ts +1 -1
- package/lib/mol-math/graph/inter-unit-graph.d.ts +4 -3
- package/lib/mol-math/graph/inter-unit-graph.js +24 -12
- package/lib/mol-math/linear-algebra/3d/minimize-rmsd.d.ts +3 -3
- package/lib/mol-math/misc.js +9 -4
- package/lib/mol-model/structure/export/mmcif.d.ts +1 -1
- package/lib/mol-model/structure/structure/mapping.d.ts +31 -0
- package/lib/mol-model/structure/structure/mapping.js +61 -0
- package/lib/mol-model/structure/structure/structure.d.ts +4 -15
- package/lib/mol-model/structure/structure/structure.js +6 -24
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +5 -1
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +8 -6
- package/lib/mol-model/structure/structure/unit/bonds.js +5 -4
- package/lib/mol-model/structure/structure/util/principal-axes.d.ts +1 -1
- package/lib/mol-model-formats/shape/ply.d.ts +10 -10
- package/lib/mol-model-formats/structure/basic/util.d.ts +1 -1
- package/lib/mol-model-formats/structure/basic/util.js +2 -1
- package/lib/mol-model-formats/structure/pdb/anisotropic.d.ts +6 -6
- package/lib/mol-model-formats/structure/property/anisotropic.d.ts +2 -2
- package/lib/mol-model-formats/structure/property/bonds/index-pair.d.ts +2 -0
- package/lib/mol-model-formats/structure/property/bonds/index-pair.js +17 -2
- package/lib/mol-model-formats/structure/property/bonds/struct_conn.d.ts +1 -1
- package/lib/mol-model-formats/structure/property/bonds/struct_conn.js +2 -2
- package/lib/mol-model-props/common/custom-property.d.ts +1 -1
- package/lib/mol-model-props/computed/chemistry/valence-model.d.ts +2 -1
- package/lib/mol-model-props/computed/chemistry/valence-model.js +12 -3
- package/lib/mol-model-props/computed/interactions/common.d.ts +2 -2
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +5 -5
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +5 -5
- package/lib/mol-model-props/computed/representations/interactions.d.ts +15 -15
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +20 -20
- package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +8 -8
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +23 -23
- package/lib/mol-plugin/config.d.ts +15 -15
- package/lib/mol-plugin/util/substructure-parent-helper.js +1 -1
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +1 -1
- package/lib/mol-plugin/util/viewport-screenshot.js +1 -1
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/structure.d.ts +23 -23
- package/lib/mol-plugin-state/actions/volume.d.ts +9 -9
- package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +5 -5
- package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +47 -47
- package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +21 -21
- package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +122 -122
- package/lib/mol-plugin-state/builder/structure/representation.d.ts +6 -6
- package/lib/mol-plugin-state/formats/volume.d.ts +26 -26
- package/lib/mol-plugin-state/manager/snapshots.js +1 -1
- package/lib/mol-plugin-state/manager/structure/component.d.ts +14 -14
- package/lib/mol-plugin-state/manager/structure/measurement.d.ts +36 -36
- package/lib/mol-plugin-state/objects.d.ts +3 -3
- package/lib/mol-plugin-state/transforms/data.d.ts +12 -12
- package/lib/mol-plugin-state/transforms/model.d.ts +22 -22
- package/lib/mol-plugin-state/transforms/representation.d.ts +19 -19
- package/lib/mol-plugin-state/transforms/volume.d.ts +4 -4
- package/lib/mol-plugin-ui/state/tree.js +2 -1
- package/lib/mol-repr/shape/loci/angle.d.ts +5 -5
- package/lib/mol-repr/shape/loci/common.d.ts +5 -5
- package/lib/mol-repr/shape/loci/dihedral.d.ts +5 -5
- package/lib/mol-repr/shape/loci/distance.d.ts +5 -5
- package/lib/mol-repr/shape/loci/label.d.ts +5 -5
- package/lib/mol-repr/shape/loci/orientation.d.ts +5 -5
- package/lib/mol-repr/shape/loci/plane.d.ts +5 -5
- package/lib/mol-repr/shape/model/unitcell.d.ts +5 -5
- package/lib/mol-repr/shape/representation.d.ts +1 -1
- package/lib/mol-repr/shape/representation.js +3 -3
- package/lib/mol-repr/structure/complex-visual.d.ts +70 -35
- package/lib/mol-repr/structure/complex-visual.js +16 -1
- package/lib/mol-repr/structure/params.d.ts +40 -40
- package/lib/mol-repr/structure/registry.d.ts +75 -73
- package/lib/mol-repr/structure/representation/backbone.d.ts +15 -15
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +18 -18
- package/lib/mol-repr/structure/representation/ball-and-stick.js +10 -6
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +15 -15
- package/lib/mol-repr/structure/representation/cartoon.d.ts +15 -15
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +22 -19
- package/lib/mol-repr/structure/representation/ellipsoid.js +17 -4
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +15 -15
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +15 -15
- package/lib/mol-repr/structure/representation/label.d.ts +15 -15
- package/lib/mol-repr/structure/representation/line.d.ts +18 -18
- package/lib/mol-repr/structure/representation/line.js +12 -7
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +15 -15
- package/lib/mol-repr/structure/representation/orientation.d.ts +15 -15
- package/lib/mol-repr/structure/representation/point.d.ts +18 -15
- package/lib/mol-repr/structure/representation/point.js +11 -4
- package/lib/mol-repr/structure/representation/putty.d.ts +15 -15
- package/lib/mol-repr/structure/representation/spacefill.d.ts +15 -15
- package/lib/mol-repr/structure/representation/spacefill.js +1 -1
- package/lib/mol-repr/structure/units-visual.d.ts +40 -40
- package/lib/mol-repr/structure/units-visual.js +1 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +10 -10
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +9 -5
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +10 -7
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +132 -10
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +194 -2
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +47 -5
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +125 -16
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +5 -5
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +5 -5
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +5 -5
- package/lib/mol-repr/structure/visual/element-cross.d.ts +43 -5
- package/lib/mol-repr/structure/visual/element-cross.js +83 -1
- package/lib/mol-repr/structure/visual/element-point.d.ts +44 -6
- package/lib/mol-repr/structure/visual/element-point.js +88 -4
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +20 -20
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +61 -12
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.js +164 -30
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +10 -10
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +20 -20
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +5 -5
- package/lib/mol-repr/structure/visual/label-text.d.ts +5 -5
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +5 -5
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +5 -5
- package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +10 -10
- package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +10 -10
- package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +5 -5
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +5 -5
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +5 -5
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +5 -5
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +10 -10
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +10 -10
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +5 -5
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +5 -5
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +5 -5
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +5 -5
- package/lib/mol-repr/structure/visual/util/bond.d.ts +9 -0
- package/lib/mol-repr/structure/visual/util/bond.js +110 -5
- package/lib/mol-repr/structure/visual/util/element.js +1 -1
- package/lib/mol-repr/structure/visual/util/link.d.ts +2 -1
- package/lib/mol-repr/structure/visual/util/link.js +6 -1
- package/lib/mol-repr/structure/visual/util/polymer/trace-iterator.d.ts +1 -0
- package/lib/mol-repr/structure/visual/util/polymer/trace-iterator.js +3 -2
- package/lib/mol-repr/volume/direct-volume.d.ts +15 -15
- package/lib/mol-repr/volume/isosurface.d.ts +30 -30
- package/lib/mol-repr/volume/registry.d.ts +20 -20
- package/lib/mol-repr/volume/representation.d.ts +5 -5
- package/lib/mol-repr/volume/segment.d.ts +25 -25
- package/lib/mol-repr/volume/slice.d.ts +15 -15
- package/lib/mol-repr/volume/util.d.ts +3 -3
- package/lib/mol-state/state/selection.js +1 -1
- package/lib/mol-state/tree/immutable.d.ts +1 -1
- package/lib/mol-state/tree/immutable.js +1 -1
- package/lib/mol-theme/color/cartoon.d.ts +478 -478
- package/lib/mol-theme/color/element-symbol.d.ts +144 -144
- package/lib/mol-theme/color/external-volume.d.ts +2 -2
- package/lib/mol-theme/color/illustrative.d.ts +122 -122
- package/lib/mol-theme/color.d.ts +374 -374
- package/lib/mol-util/browser.js +2 -0
- package/lib/mol-util/clip.d.ts +2 -2
- package/lib/mol-util/data-source.d.ts +1 -1
- package/lib/mol-util/nodejs-shims.js +1 -0
- package/lib/mol-util/read.d.ts +2 -2
- package/lib/mol-util/zip/inflate.d.ts +1 -1
- package/lib/mol-util/zip/util.d.ts +16 -16
- package/lib/mol-util/zip/zip.d.ts +8 -8
- package/lib/servers/common/file-handle.d.ts +8 -1
- package/lib/servers/common/file-handle.js +87 -1
- package/lib/servers/common/google-cloud-storage.d.ts +14 -0
- package/lib/servers/common/google-cloud-storage.js +48 -0
- package/lib/servers/membrane-orientation/config.d.ts +60 -0
- package/lib/servers/membrane-orientation/config.js +85 -0
- package/lib/servers/membrane-orientation/server.d.ts +7 -0
- package/lib/servers/membrane-orientation/server.js +58 -0
- package/lib/servers/membrane-orientation/version.d.ts +6 -0
- package/lib/servers/membrane-orientation/version.js +6 -0
- package/lib/servers/membrane-orientation/web-api.d.ts +7 -0
- package/lib/servers/membrane-orientation/web-api.js +95 -0
- package/lib/servers/membrane-orientation/web-schema.d.ts +203 -0
- package/lib/servers/membrane-orientation/web-schema.js +215 -0
- package/lib/servers/model/config.js +2 -2
- package/lib/servers/model/server/api-web.js +4 -4
- package/lib/servers/model/server/structure-wrapper.js +1 -1
- package/lib/servers/model/utils/fetch-retry.d.ts +5 -2
- package/lib/servers/model/utils/fetch-retry.js +19 -3
- package/lib/servers/model/utils/tar.d.ts +2 -2
- package/lib/servers/plugin-state/index.js +1 -2
- package/lib/servers/volume/common/data-format.d.ts +1 -1
- package/lib/servers/volume/config.d.ts +5 -1
- package/lib/servers/volume/config.js +3 -2
- package/lib/servers/volume/pack/format.js +2 -4
- package/lib/servers/volume/server/api.js +4 -5
- package/lib/servers/volume/server/query/execute.js +17 -11
- package/lib/servers/volume/server/web-api.js +3 -3
- package/package.json +22 -17
There are too many changes on this page to be displayed.
The amount of changes on this page would crash your brower.
You can still verify the content by downloading the package file manually.