molstar 3.7.0 → 3.8.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (235) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -202
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +0 -15
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/viewer/embedded.html +43 -43
  9. package/lib/apps/viewer/index.html +106 -106
  10. package/lib/cli/chem-comp-dict/create-ions.d.ts +2 -1
  11. package/lib/cli/chem-comp-dict/create-ions.js +3 -2
  12. package/lib/cli/cifschema/index.js +1 -1
  13. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  14. package/lib/commonjs/cli/chem-comp-dict/create-ions.d.ts +2 -1
  15. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +3 -2
  16. package/lib/commonjs/cli/cifschema/index.js +1 -1
  17. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  18. package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +20 -5
  19. package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +284 -0
  20. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +0 -2
  21. package/lib/commonjs/mol-canvas3d/passes/draw.js +35 -70
  22. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +1 -1
  23. package/lib/commonjs/mol-canvas3d/passes/pick.js +1 -1
  24. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  25. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +16 -11
  26. package/lib/commonjs/mol-geo/geometry/color-data.d.ts +5 -2
  27. package/lib/commonjs/mol-geo/geometry/color-data.js +7 -17
  28. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  29. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
  30. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -0
  31. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
  32. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  33. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
  34. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  35. package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +1 -1
  36. package/lib/commonjs/mol-geo/geometry/transparency-data.js +3 -1
  37. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -1
  38. package/lib/commonjs/mol-gl/renderable/cylinders.js +1 -1
  39. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +1 -1
  40. package/lib/commonjs/mol-gl/renderable/mesh.js +1 -1
  41. package/lib/commonjs/mol-gl/renderable/schema.d.ts +2 -2
  42. package/lib/commonjs/mol-gl/renderable/schema.js +2 -2
  43. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +1 -1
  44. package/lib/commonjs/mol-gl/renderable/spheres.js +1 -1
  45. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +1 -1
  46. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
  47. package/lib/commonjs/mol-gl/renderer.d.ts +5 -5
  48. package/lib/commonjs/mol-gl/renderer.js +64 -45
  49. package/lib/commonjs/mol-gl/scene.d.ts +1 -0
  50. package/lib/commonjs/mol-gl/scene.js +26 -1
  51. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
  52. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
  53. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  54. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  55. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
  56. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
  57. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  58. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  59. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  60. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  61. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  62. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  63. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  64. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  65. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  66. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  67. package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +3 -2
  68. package/lib/commonjs/mol-gl/shader/outlines.frag.js +3 -2
  69. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  70. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  71. package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +2 -2
  72. package/lib/commonjs/mol-gl/shader/ssao.frag.js +2 -2
  73. package/lib/commonjs/mol-gl/webgl/render-target.d.ts +3 -1
  74. package/lib/commonjs/mol-gl/webgl/render-target.js +3 -1
  75. package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +2 -1
  76. package/lib/commonjs/mol-gl/webgl/renderbuffer.js +8 -1
  77. package/lib/commonjs/mol-gl/webgl/state.d.ts +7 -1
  78. package/lib/commonjs/mol-gl/webgl/state.js +28 -1
  79. package/lib/commonjs/mol-gl/webgl/texture.js +3 -0
  80. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
  81. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
  82. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  83. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
  84. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
  85. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +1 -1
  86. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
  87. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +2 -3
  88. package/lib/commonjs/mol-io/reader/dx/parser.js +1 -1
  89. package/lib/commonjs/mol-math/geometry/lookup3d/grid.d.ts +1 -1
  90. package/lib/commonjs/mol-math/geometry/lookup3d/grid.js +3 -3
  91. package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
  92. package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.js +2 -1
  93. package/lib/commonjs/mol-model/structure/model/types/ions.d.ts +2 -2
  94. package/lib/commonjs/mol-model/structure/model/types/ions.js +2 -2
  95. package/lib/commonjs/mol-model/structure/model/types/saccharides.js +1 -1
  96. package/lib/commonjs/mol-model/structure/model/types.d.ts +1 -1
  97. package/lib/commonjs/mol-model/structure/model/types.js +43 -41
  98. package/lib/commonjs/mol-model-formats/structure/common/property.js +2 -0
  99. package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
  100. package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +2 -2
  101. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  102. package/lib/commonjs/mol-plugin-state/helpers/root-structure.js +3 -1
  103. package/lib/commonjs/mol-repr/volume/slice.js +1 -1
  104. package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
  105. package/lib/commonjs/mol-theme/color/volume-value.d.ts +3 -2
  106. package/lib/commonjs/mol-theme/color/volume-value.js +1 -3
  107. package/lib/commonjs/mol-theme/color.d.ts +47 -38
  108. package/lib/commonjs/mol-theme/theme.d.ts +8 -7
  109. package/lib/commonjs/mol-theme/theme.js +1 -1
  110. package/lib/examples/alpha-orbitals/index.html +61 -61
  111. package/lib/examples/basic-wrapper/index.html +137 -137
  112. package/lib/examples/lighting/index.html +88 -88
  113. package/lib/examples/proteopedia-wrapper/coloring.d.ts +20 -5
  114. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  115. package/lib/extensions/rcsb/graphql/types.d.ts +284 -0
  116. package/lib/mol-canvas3d/passes/draw.d.ts +0 -2
  117. package/lib/mol-canvas3d/passes/draw.js +32 -67
  118. package/lib/mol-canvas3d/passes/pick.d.ts +1 -1
  119. package/lib/mol-canvas3d/passes/pick.js +1 -1
  120. package/lib/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  121. package/lib/mol-canvas3d/passes/postprocessing.js +16 -11
  122. package/lib/mol-geo/geometry/color-data.d.ts +5 -2
  123. package/lib/mol-geo/geometry/color-data.js +7 -17
  124. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  125. package/lib/mol-geo/geometry/cylinders/cylinders.js +2 -2
  126. package/lib/mol-geo/geometry/lines/lines.d.ts +1 -0
  127. package/lib/mol-geo/geometry/mesh/mesh.js +2 -2
  128. package/lib/mol-geo/geometry/points/points.d.ts +1 -1
  129. package/lib/mol-geo/geometry/spheres/spheres.js +2 -2
  130. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  131. package/lib/mol-geo/geometry/transparency-data.d.ts +1 -1
  132. package/lib/mol-geo/geometry/transparency-data.js +3 -1
  133. package/lib/mol-gl/renderable/cylinders.d.ts +1 -1
  134. package/lib/mol-gl/renderable/cylinders.js +1 -1
  135. package/lib/mol-gl/renderable/mesh.d.ts +1 -1
  136. package/lib/mol-gl/renderable/mesh.js +1 -1
  137. package/lib/mol-gl/renderable/schema.d.ts +2 -2
  138. package/lib/mol-gl/renderable/schema.js +2 -2
  139. package/lib/mol-gl/renderable/spheres.d.ts +1 -1
  140. package/lib/mol-gl/renderable/spheres.js +1 -1
  141. package/lib/mol-gl/renderable/texture-mesh.d.ts +1 -1
  142. package/lib/mol-gl/renderable/texture-mesh.js +1 -1
  143. package/lib/mol-gl/renderer.d.ts +5 -5
  144. package/lib/mol-gl/renderer.js +64 -45
  145. package/lib/mol-gl/scene.d.ts +1 -0
  146. package/lib/mol-gl/scene.js +26 -1
  147. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
  148. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
  149. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  150. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  151. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
  152. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
  153. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  154. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  155. package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  156. package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
  157. package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  158. package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  159. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  160. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  161. package/lib/mol-gl/shader/image.frag.d.ts +1 -1
  162. package/lib/mol-gl/shader/image.frag.js +1 -1
  163. package/lib/mol-gl/shader/outlines.frag.d.ts +3 -2
  164. package/lib/mol-gl/shader/outlines.frag.js +3 -2
  165. package/lib/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  166. package/lib/mol-gl/shader/postprocessing.frag.js +1 -1
  167. package/lib/mol-gl/shader/ssao.frag.d.ts +2 -2
  168. package/lib/mol-gl/shader/ssao.frag.js +2 -2
  169. package/lib/mol-gl/webgl/render-target.d.ts +3 -1
  170. package/lib/mol-gl/webgl/render-target.js +3 -1
  171. package/lib/mol-gl/webgl/renderbuffer.d.ts +2 -1
  172. package/lib/mol-gl/webgl/renderbuffer.js +8 -1
  173. package/lib/mol-gl/webgl/state.d.ts +7 -1
  174. package/lib/mol-gl/webgl/state.js +28 -1
  175. package/lib/mol-gl/webgl/texture.js +3 -0
  176. package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
  177. package/lib/mol-io/reader/cif/schema/bird.js +1 -1
  178. package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  179. package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
  180. package/lib/mol-io/reader/cif/schema/cif-core.d.ts +1 -1
  181. package/lib/mol-io/reader/cif/schema/cif-core.js +1 -1
  182. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +3 -4
  183. package/lib/mol-io/reader/cif/schema/mmcif.js +2 -3
  184. package/lib/mol-io/reader/dx/parser.js +1 -1
  185. package/lib/mol-math/geometry/lookup3d/grid.d.ts +1 -1
  186. package/lib/mol-math/geometry/lookup3d/grid.js +3 -3
  187. package/lib/mol-model/structure/model/properties/seconday-structure.d.ts +4 -2
  188. package/lib/mol-model/structure/model/properties/seconday-structure.js +2 -1
  189. package/lib/mol-model/structure/model/types/ions.d.ts +2 -2
  190. package/lib/mol-model/structure/model/types/ions.js +2 -2
  191. package/lib/mol-model/structure/model/types/saccharides.js +1 -1
  192. package/lib/mol-model/structure/model/types.d.ts +1 -1
  193. package/lib/mol-model/structure/model/types.js +43 -41
  194. package/lib/mol-model-formats/structure/common/property.js +2 -0
  195. package/lib/mol-model-formats/structure/property/secondary-structure.d.ts +1 -1
  196. package/lib/mol-model-formats/structure/property/secondary-structure.js +2 -2
  197. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  198. package/lib/mol-plugin/version.js +2 -2
  199. package/lib/mol-plugin-state/helpers/root-structure.js +3 -1
  200. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  201. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  202. package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
  203. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  204. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  205. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  206. package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
  207. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  208. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  209. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  210. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  211. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  212. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +128 -128
  213. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  214. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  215. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  216. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  217. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  218. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  219. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  220. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  221. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  222. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  223. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  224. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  225. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  226. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  227. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  228. package/lib/mol-repr/volume/slice.js +1 -1
  229. package/lib/mol-script/language/builder.d.ts +0 -1
  230. package/lib/mol-theme/color/volume-value.d.ts +3 -2
  231. package/lib/mol-theme/color/volume-value.js +2 -4
  232. package/lib/mol-theme/color.d.ts +47 -38
  233. package/lib/mol-theme/theme.d.ts +8 -7
  234. package/lib/mol-theme/theme.js +1 -1
  235. package/package.json +162 -162
@@ -1,107 +1,107 @@
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- <!DOCTYPE html>
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- <html lang="en">
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- <head>
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- <meta charset="utf-8" />
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- <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
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- <link rel="icon" href="./favicon.ico" type="image/x-icon">
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- <title>Mol* Viewer</title>
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- <style>
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- * {
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- margin: 0;
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- padding: 0;
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- box-sizing: border-box;
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- }
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- html, body {
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- width: 100%;
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- height: 100%;
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- overflow: hidden;
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- }
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- hr {
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- margin: 10px;
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- }
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- h1, h2, h3, h4, h5 {
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- margin-top: 5px;
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- margin-bottom: 3px;
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- }
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- button {
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- padding: 2px;
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- }
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- #app {
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- position: absolute;
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- left: 100px;
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- top: 100px;
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- width: 800px;
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- height: 600px;
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- }
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- </style>
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- <link rel="stylesheet" type="text/css" href="molstar.css" />
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- </head>
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- <body>
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- <div id="app"></div>
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- <script type="text/javascript" src="./molstar.js"></script>
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- <script type="text/javascript">
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- function getParam(name, regex) {
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- var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
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- return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
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- }
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-
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- var debugMode = getParam('debug-mode', '[^&]+').trim() === '1';
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- if (debugMode) molstar.setDebugMode(debugMode, debugMode);
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-
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- var hideControls = getParam('hide-controls', '[^&]+').trim() === '1';
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- var collapseLeftPanel = getParam('collapse-left-panel', '[^&]+').trim() === '1';
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- var pdbProvider = getParam('pdb-provider', '[^&]+').trim().toLowerCase();
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- var emdbProvider = getParam('emdb-provider', '[^&]+').trim().toLowerCase();
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- var mapProvider = getParam('map-provider', '[^&]+').trim().toLowerCase();
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- var pixelScale = getParam('pixel-scale', '[^&]+').trim();
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- var pickScale = getParam('pick-scale', '[^&]+').trim();
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- var pickPadding = getParam('pick-padding', '[^&]+').trim();
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- var disableWboit = getParam('disable-wboit', '[^&]+').trim() === '1';
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- var preferWebgl1 = getParam('prefer-webgl1', '[^&]+').trim() === '1' || void 0;
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-
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- molstar.Viewer.create('app', {
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- layoutShowControls: !hideControls,
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- viewportShowExpand: false,
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- collapseLeftPanel: collapseLeftPanel,
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- pdbProvider: pdbProvider || 'pdbe',
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- emdbProvider: emdbProvider || 'pdbe',
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- volumeStreamingServer: (mapProvider || 'pdbe') === 'rcsb'
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- ? 'https://maps.rcsb.org'
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- : 'https://www.ebi.ac.uk/pdbe/densities',
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- pixelScale: parseFloat(pixelScale) || 1,
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- pickScale: parseFloat(pickScale) || 0.25,
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- pickPadding: isNaN(parseFloat(pickPadding)) ? 1 : parseFloat(pickPadding),
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- enableWboit: disableWboit ? false : void 0, // use default value if disable-wboit is not set
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- preferWebgl1: preferWebgl1,
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- }).then(viewer => {
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- var snapshotId = getParam('snapshot-id', '[^&]+').trim();
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- if (snapshotId) viewer.setRemoteSnapshot(snapshotId);
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-
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- var snapshotUrl = getParam('snapshot-url', '[^&]+').trim();
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- var snapshotUrlType = getParam('snapshot-url-type', '[^&]+').toLowerCase().trim() || 'molj';
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- if (snapshotUrl && snapshotUrlType) viewer.loadSnapshotFromUrl(snapshotUrl, snapshotUrlType);
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-
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- var structureUrl = getParam('structure-url', '[^&]+').trim();
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- var structureUrlFormat = getParam('structure-url-format', '[a-z]+').toLowerCase().trim();
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- var structureUrlIsBinary = getParam('structure-url-is-binary', '[^&]+').trim() === '1';
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- if (structureUrl) viewer.loadStructureFromUrl(structureUrl, structureUrlFormat, structureUrlIsBinary);
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-
89
- var pdb = getParam('pdb', '[^&]+').trim();
90
- if (pdb) viewer.loadPdb(pdb);
91
-
92
- var pdbDev = getParam('pdb-dev', '[^&]+').trim();
93
- if (pdbDev) viewer.loadPdbDev(pdbDev);
94
-
95
- var emdb = getParam('emdb', '[^&]+').trim();
96
- if (emdb) viewer.loadEmdb(emdb);
97
-
98
- var afdb = getParam('afdb', '[^&]+').trim();
99
- if (afdb) viewer.loadAlphaFoldDb(afdb);
100
-
101
- var modelArchive = getParam('model-archive', '[^&]+').trim();
102
- if (modelArchive) viewer.loadModelArchive(modelArchive);
103
- });
104
- </script>
105
- <!-- __MOLSTAR_ANALYTICS__ -->
106
- </body>
1
+ <!DOCTYPE html>
2
+ <html lang="en">
3
+ <head>
4
+ <meta charset="utf-8" />
5
+ <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
+ <link rel="icon" href="./favicon.ico" type="image/x-icon">
7
+ <title>Mol* Viewer</title>
8
+ <style>
9
+ * {
10
+ margin: 0;
11
+ padding: 0;
12
+ box-sizing: border-box;
13
+ }
14
+ html, body {
15
+ width: 100%;
16
+ height: 100%;
17
+ overflow: hidden;
18
+ }
19
+ hr {
20
+ margin: 10px;
21
+ }
22
+ h1, h2, h3, h4, h5 {
23
+ margin-top: 5px;
24
+ margin-bottom: 3px;
25
+ }
26
+ button {
27
+ padding: 2px;
28
+ }
29
+ #app {
30
+ position: absolute;
31
+ left: 100px;
32
+ top: 100px;
33
+ width: 800px;
34
+ height: 600px;
35
+ }
36
+ </style>
37
+ <link rel="stylesheet" type="text/css" href="molstar.css" />
38
+ </head>
39
+ <body>
40
+ <div id="app"></div>
41
+ <script type="text/javascript" src="./molstar.js"></script>
42
+ <script type="text/javascript">
43
+ function getParam(name, regex) {
44
+ var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
45
+ return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
46
+ }
47
+
48
+ var debugMode = getParam('debug-mode', '[^&]+').trim() === '1';
49
+ if (debugMode) molstar.setDebugMode(debugMode, debugMode);
50
+
51
+ var hideControls = getParam('hide-controls', '[^&]+').trim() === '1';
52
+ var collapseLeftPanel = getParam('collapse-left-panel', '[^&]+').trim() === '1';
53
+ var pdbProvider = getParam('pdb-provider', '[^&]+').trim().toLowerCase();
54
+ var emdbProvider = getParam('emdb-provider', '[^&]+').trim().toLowerCase();
55
+ var mapProvider = getParam('map-provider', '[^&]+').trim().toLowerCase();
56
+ var pixelScale = getParam('pixel-scale', '[^&]+').trim();
57
+ var pickScale = getParam('pick-scale', '[^&]+').trim();
58
+ var pickPadding = getParam('pick-padding', '[^&]+').trim();
59
+ var disableWboit = getParam('disable-wboit', '[^&]+').trim() === '1';
60
+ var preferWebgl1 = getParam('prefer-webgl1', '[^&]+').trim() === '1' || void 0;
61
+
62
+ molstar.Viewer.create('app', {
63
+ layoutShowControls: !hideControls,
64
+ viewportShowExpand: false,
65
+ collapseLeftPanel: collapseLeftPanel,
66
+ pdbProvider: pdbProvider || 'pdbe',
67
+ emdbProvider: emdbProvider || 'pdbe',
68
+ volumeStreamingServer: (mapProvider || 'pdbe') === 'rcsb'
69
+ ? 'https://maps.rcsb.org'
70
+ : 'https://www.ebi.ac.uk/pdbe/densities',
71
+ pixelScale: parseFloat(pixelScale) || 1,
72
+ pickScale: parseFloat(pickScale) || 0.25,
73
+ pickPadding: isNaN(parseFloat(pickPadding)) ? 1 : parseFloat(pickPadding),
74
+ enableWboit: disableWboit ? false : void 0, // use default value if disable-wboit is not set
75
+ preferWebgl1: preferWebgl1,
76
+ }).then(viewer => {
77
+ var snapshotId = getParam('snapshot-id', '[^&]+').trim();
78
+ if (snapshotId) viewer.setRemoteSnapshot(snapshotId);
79
+
80
+ var snapshotUrl = getParam('snapshot-url', '[^&]+').trim();
81
+ var snapshotUrlType = getParam('snapshot-url-type', '[^&]+').toLowerCase().trim() || 'molj';
82
+ if (snapshotUrl && snapshotUrlType) viewer.loadSnapshotFromUrl(snapshotUrl, snapshotUrlType);
83
+
84
+ var structureUrl = getParam('structure-url', '[^&]+').trim();
85
+ var structureUrlFormat = getParam('structure-url-format', '[a-z]+').toLowerCase().trim();
86
+ var structureUrlIsBinary = getParam('structure-url-is-binary', '[^&]+').trim() === '1';
87
+ if (structureUrl) viewer.loadStructureFromUrl(structureUrl, structureUrlFormat, structureUrlIsBinary);
88
+
89
+ var pdb = getParam('pdb', '[^&]+').trim();
90
+ if (pdb) viewer.loadPdb(pdb);
91
+
92
+ var pdbDev = getParam('pdb-dev', '[^&]+').trim();
93
+ if (pdbDev) viewer.loadPdbDev(pdbDev);
94
+
95
+ var emdb = getParam('emdb', '[^&]+').trim();
96
+ if (emdb) viewer.loadEmdb(emdb);
97
+
98
+ var afdb = getParam('afdb', '[^&]+').trim();
99
+ if (afdb) viewer.loadAlphaFoldDb(afdb);
100
+
101
+ var modelArchive = getParam('model-archive', '[^&]+').trim();
102
+ if (modelArchive) viewer.loadModelArchive(modelArchive);
103
+ });
104
+ </script>
105
+ <!-- __MOLSTAR_ANALYTICS__ -->
106
+ </body>
107
107
  </html>