molstar 3.6.1 → 3.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (216) hide show
  1. package/build/viewer/molstar.css +1 -1
  2. package/build/viewer/molstar.js +1 -1
  3. package/lib/commonjs/examples/alpha-orbitals/index.js +20 -15
  4. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -1
  5. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -4
  6. package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -1
  7. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
  8. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -1
  9. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  10. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
  11. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -2
  12. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
  13. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  14. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -2
  15. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -1
  16. package/lib/commonjs/mol-geo/geometry/color-data.d.ts +2 -8
  17. package/lib/commonjs/mol-geo/geometry/color-data.js +16 -3
  18. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  19. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -2
  20. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  21. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -2
  22. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  23. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -2
  24. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  25. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +15 -4
  26. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +2 -1
  27. package/lib/commonjs/mol-gl/renderable/cylinders.js +2 -2
  28. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +2 -1
  29. package/lib/commonjs/mol-gl/renderable/mesh.js +2 -2
  30. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +2 -1
  31. package/lib/commonjs/mol-gl/renderable/spheres.js +2 -2
  32. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +2 -1
  33. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +2 -2
  34. package/lib/commonjs/mol-gl/renderer.js +54 -23
  35. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
  36. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
  37. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
  38. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
  39. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  40. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  41. package/lib/commonjs/mol-io/writer/ligand-encoder.d.ts +4 -2
  42. package/lib/commonjs/mol-io/writer/ligand-encoder.js +9 -4
  43. package/lib/commonjs/mol-io/writer/mol/encoder.js +16 -4
  44. package/lib/commonjs/mol-io/writer/mol2/encoder.js +17 -4
  45. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -2
  46. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
  47. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
  48. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -3
  49. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
  50. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js +0 -1
  51. package/lib/commonjs/mol-plugin/commands.d.ts +1 -1
  52. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -3
  53. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +6 -6
  54. package/lib/commonjs/mol-plugin-ui/base.d.ts +3 -1
  55. package/lib/commonjs/mol-plugin-ui/controls/color.d.ts +1 -1
  56. package/lib/commonjs/mol-plugin-ui/controls/common.d.ts +2 -0
  57. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
  58. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +21 -7
  59. package/lib/commonjs/mol-plugin-ui/plugin.d.ts +2 -0
  60. package/lib/commonjs/mol-plugin-ui/plugin.js +2 -2
  61. package/lib/commonjs/mol-plugin-ui/spec.d.ts +1 -0
  62. package/lib/commonjs/mol-plugin-ui/viewport/help.d.ts +4 -1
  63. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -1
  64. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -1
  65. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
  66. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -1
  67. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -1
  68. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +3 -3
  69. package/lib/commonjs/mol-repr/structure/params.d.ts +4 -4
  70. package/lib/commonjs/mol-repr/structure/registry.d.ts +10 -10
  71. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -3
  72. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
  73. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
  74. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -3
  75. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
  76. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
  77. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
  78. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -3
  79. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -3
  80. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -3
  81. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +4 -4
  82. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
  83. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
  84. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
  85. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
  86. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
  87. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -2
  88. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
  89. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
  90. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
  91. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
  92. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
  93. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
  94. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
  95. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
  96. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
  97. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
  98. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
  99. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
  100. package/lib/commonjs/mol-repr/util.d.ts +1 -1
  101. package/lib/commonjs/mol-repr/util.js +1 -1
  102. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +5 -5
  103. package/lib/commonjs/mol-repr/volume/registry.d.ts +1 -1
  104. package/lib/commonjs/mol-theme/color.d.ts +9 -2
  105. package/lib/commonjs/mol-theme/color.js +1 -1
  106. package/lib/commonjs/servers/model/server/query.js +1 -3
  107. package/lib/commonjs/servers/model/version.d.ts +1 -1
  108. package/lib/commonjs/servers/model/version.js +1 -1
  109. package/lib/examples/alpha-orbitals/index.js +20 -15
  110. package/lib/extensions/anvil/behavior.d.ts +1 -1
  111. package/lib/extensions/anvil/representation.d.ts +4 -4
  112. package/lib/extensions/cellpack/representation.d.ts +1 -1
  113. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
  114. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -1
  115. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  116. package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -5
  117. package/lib/mol-canvas3d/canvas3d.d.ts +2 -2
  118. package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -1
  119. package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  120. package/lib/mol-canvas3d/helper/helper.d.ts +2 -2
  121. package/lib/mol-canvas3d/passes/image.d.ts +1 -1
  122. package/lib/mol-geo/geometry/color-data.d.ts +2 -8
  123. package/lib/mol-geo/geometry/color-data.js +16 -3
  124. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  125. package/lib/mol-geo/geometry/cylinders/cylinders.js +3 -2
  126. package/lib/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  127. package/lib/mol-geo/geometry/mesh/mesh.js +3 -2
  128. package/lib/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  129. package/lib/mol-geo/geometry/spheres/spheres.js +3 -2
  130. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  131. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +15 -4
  132. package/lib/mol-gl/renderable/cylinders.d.ts +2 -1
  133. package/lib/mol-gl/renderable/cylinders.js +2 -2
  134. package/lib/mol-gl/renderable/mesh.d.ts +2 -1
  135. package/lib/mol-gl/renderable/mesh.js +2 -2
  136. package/lib/mol-gl/renderable/spheres.d.ts +2 -1
  137. package/lib/mol-gl/renderable/spheres.js +2 -2
  138. package/lib/mol-gl/renderable/texture-mesh.d.ts +2 -1
  139. package/lib/mol-gl/renderable/texture-mesh.js +2 -2
  140. package/lib/mol-gl/renderer.js +54 -23
  141. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
  142. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
  143. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
  144. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
  145. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  146. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  147. package/lib/mol-io/writer/ligand-encoder.d.ts +4 -2
  148. package/lib/mol-io/writer/ligand-encoder.js +9 -4
  149. package/lib/mol-io/writer/mol/encoder.js +16 -4
  150. package/lib/mol-io/writer/mol2/encoder.js +17 -4
  151. package/lib/mol-model-formats/shape/ply.d.ts +2 -2
  152. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
  153. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
  154. package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -3
  155. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
  156. package/lib/mol-plugin/behavior/dynamic/volume-streaming/util.js +0 -1
  157. package/lib/mol-plugin/commands.d.ts +1 -1
  158. package/lib/mol-plugin/util/viewport-screenshot.d.ts +3 -3
  159. package/lib/mol-plugin/version.js +2 -2
  160. package/lib/mol-plugin-state/transforms/representation.d.ts +6 -6
  161. package/lib/mol-plugin-ui/base.d.ts +3 -1
  162. package/lib/mol-plugin-ui/controls/color.d.ts +1 -1
  163. package/lib/mol-plugin-ui/controls/common.d.ts +2 -0
  164. package/lib/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
  165. package/lib/mol-plugin-ui/hooks/use-behavior.js +20 -7
  166. package/lib/mol-plugin-ui/plugin.d.ts +2 -0
  167. package/lib/mol-plugin-ui/plugin.js +2 -2
  168. package/lib/mol-plugin-ui/spec.d.ts +1 -0
  169. package/lib/mol-plugin-ui/viewport/help.d.ts +4 -1
  170. package/lib/mol-repr/shape/loci/angle.d.ts +1 -1
  171. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -1
  172. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
  173. package/lib/mol-repr/shape/loci/plane.d.ts +1 -1
  174. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
  175. package/lib/mol-repr/structure/complex-visual.d.ts +3 -3
  176. package/lib/mol-repr/structure/params.d.ts +4 -4
  177. package/lib/mol-repr/structure/registry.d.ts +10 -10
  178. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -3
  179. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
  180. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
  181. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -3
  182. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
  183. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
  184. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
  185. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -3
  186. package/lib/mol-repr/structure/representation/putty.d.ts +3 -3
  187. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -3
  188. package/lib/mol-repr/structure/units-visual.d.ts +4 -4
  189. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
  190. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
  191. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
  192. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
  193. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
  194. package/lib/mol-repr/structure/visual/element-sphere.d.ts +2 -2
  195. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
  196. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
  197. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
  198. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
  199. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
  200. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
  201. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
  202. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
  203. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
  204. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
  205. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
  206. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
  207. package/lib/mol-repr/util.d.ts +1 -1
  208. package/lib/mol-repr/util.js +1 -1
  209. package/lib/mol-repr/volume/isosurface.d.ts +5 -5
  210. package/lib/mol-repr/volume/registry.d.ts +1 -1
  211. package/lib/mol-theme/color.d.ts +9 -2
  212. package/lib/mol-theme/color.js +1 -1
  213. package/lib/servers/model/server/query.js +1 -3
  214. package/lib/servers/model/version.d.ts +1 -1
  215. package/lib/servers/model/version.js +1 -1
  216. package/package.json +16 -16
@@ -33,7 +33,7 @@ export declare const InterUnitBondCylinderParams: {
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  doubleSided: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -83,7 +83,7 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
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  doubleSided: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -34,7 +34,7 @@ export declare const IntraUnitBondCylinderParams: {
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  doubleSided: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -84,7 +84,7 @@ export declare function IntraUnitBondCylinderVisual(materialId: number, structur
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  doubleSided: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -25,7 +25,7 @@ export declare const CarbohydrateLinkParams: {
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  flatShaded: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -15,7 +15,7 @@ export declare const CarbohydrateSymbolParams: {
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  flatShaded: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -25,7 +25,7 @@ export declare const CarbohydrateTerminalLinkParams: {
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  flatShaded: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -19,7 +19,7 @@ export declare const ElementSphereParams: {
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  doubleSided: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -54,7 +54,7 @@ export declare function ElementSphereVisual(materialId: number, structure: Struc
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  doubleSided: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -20,7 +20,7 @@ export declare const EllipsoidMeshParams: {
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  flatShaded: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -26,7 +26,7 @@ export declare const GaussianSurfaceMeshParams: {
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  flatShaded: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
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  xrayShaded: PD.BooleanParam;
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- allowTransparentBackfaces: PD.BooleanParam;
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+ transparentBackfaces: PD.Select<string>;
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  bumpFrequency: PD.Numeric;
31
31
  bumpAmplitude: PD.Numeric;
32
32
  alpha: PD.Numeric;
@@ -66,7 +66,7 @@ export declare const StructureGaussianSurfaceMeshParams: {
66
66
  flatShaded: PD.BooleanParam;
67
67
  ignoreLight: PD.BooleanParam;
68
68
  xrayShaded: PD.BooleanParam;
69
- allowTransparentBackfaces: PD.BooleanParam;
69
+ transparentBackfaces: PD.Select<string>;
70
70
  bumpFrequency: PD.Numeric;
71
71
  bumpAmplitude: PD.Numeric;
72
72
  alpha: PD.Numeric;
@@ -106,7 +106,7 @@ export declare function GaussianSurfaceVisual(materialId: number, structure: Str
106
106
  flatShaded: PD.BooleanParam;
107
107
  ignoreLight: PD.BooleanParam;
108
108
  xrayShaded: PD.BooleanParam;
109
- allowTransparentBackfaces: PD.BooleanParam;
109
+ transparentBackfaces: PD.Select<string>;
110
110
  bumpFrequency: PD.Numeric;
111
111
  bumpAmplitude: PD.Numeric;
112
112
  alpha: PD.Numeric;
@@ -145,7 +145,7 @@ export declare function StructureGaussianSurfaceVisual(materialId: number, struc
145
145
  flatShaded: PD.BooleanParam;
146
146
  ignoreLight: PD.BooleanParam;
147
147
  xrayShaded: PD.BooleanParam;
148
- allowTransparentBackfaces: PD.BooleanParam;
148
+ transparentBackfaces: PD.Select<string>;
149
149
  bumpFrequency: PD.Numeric;
150
150
  bumpAmplitude: PD.Numeric;
151
151
  alpha: PD.Numeric;
@@ -22,7 +22,7 @@ export declare const MolecularSurfaceMeshParams: {
22
22
  flatShaded: PD.BooleanParam;
23
23
  ignoreLight: PD.BooleanParam;
24
24
  xrayShaded: PD.BooleanParam;
25
- allowTransparentBackfaces: PD.BooleanParam;
25
+ transparentBackfaces: PD.Select<string>;
26
26
  bumpFrequency: PD.Numeric;
27
27
  bumpAmplitude: PD.Numeric;
28
28
  alpha: PD.Numeric;
@@ -24,7 +24,7 @@ export declare const NucleotideBlockParams: {
24
24
  flatShaded: PD.BooleanParam;
25
25
  ignoreLight: PD.BooleanParam;
26
26
  xrayShaded: PD.BooleanParam;
27
- allowTransparentBackfaces: PD.BooleanParam;
27
+ transparentBackfaces: PD.Select<string>;
28
28
  bumpFrequency: PD.Numeric;
29
29
  bumpAmplitude: PD.Numeric;
30
30
  alpha: PD.Numeric;
@@ -27,7 +27,7 @@ export declare const NucleotideRingParams: {
27
27
  flatShaded: PD.BooleanParam;
28
28
  ignoreLight: PD.BooleanParam;
29
29
  xrayShaded: PD.BooleanParam;
30
- allowTransparentBackfaces: PD.BooleanParam;
30
+ transparentBackfaces: PD.Select<string>;
31
31
  bumpFrequency: PD.Numeric;
32
32
  bumpAmplitude: PD.Numeric;
33
33
  alpha: PD.Numeric;
@@ -19,7 +19,7 @@ export declare const OrientationEllipsoidMeshParams: {
19
19
  flatShaded: PD.BooleanParam;
20
20
  ignoreLight: PD.BooleanParam;
21
21
  xrayShaded: PD.BooleanParam;
22
- allowTransparentBackfaces: PD.BooleanParam;
22
+ transparentBackfaces: PD.Select<string>;
23
23
  bumpFrequency: PD.Numeric;
24
24
  bumpAmplitude: PD.Numeric;
25
25
  alpha: PD.Numeric;
@@ -17,7 +17,7 @@ export declare const PolymerBackboneCylinderParams: {
17
17
  doubleSided: PD.BooleanParam;
18
18
  ignoreLight: PD.BooleanParam;
19
19
  xrayShaded: PD.BooleanParam;
20
- allowTransparentBackfaces: PD.BooleanParam;
20
+ transparentBackfaces: PD.Select<string>;
21
21
  bumpFrequency: PD.Numeric;
22
22
  bumpAmplitude: PD.Numeric;
23
23
  alpha: PD.Numeric;
@@ -51,7 +51,7 @@ export declare function PolymerBackboneCylinderVisual(materialId: number, struct
51
51
  doubleSided: PD.BooleanParam;
52
52
  ignoreLight: PD.BooleanParam;
53
53
  xrayShaded: PD.BooleanParam;
54
- allowTransparentBackfaces: PD.BooleanParam;
54
+ transparentBackfaces: PD.Select<string>;
55
55
  bumpFrequency: PD.Numeric;
56
56
  bumpAmplitude: PD.Numeric;
57
57
  alpha: PD.Numeric;
@@ -16,7 +16,7 @@ export declare const PolymerBackboneSphereParams: {
16
16
  doubleSided: PD.BooleanParam;
17
17
  ignoreLight: PD.BooleanParam;
18
18
  xrayShaded: PD.BooleanParam;
19
- allowTransparentBackfaces: PD.BooleanParam;
19
+ transparentBackfaces: PD.Select<string>;
20
20
  bumpFrequency: PD.Numeric;
21
21
  bumpAmplitude: PD.Numeric;
22
22
  alpha: PD.Numeric;
@@ -49,7 +49,7 @@ export declare function PolymerBackboneSphereVisual(materialId: number, structur
49
49
  doubleSided: PD.BooleanParam;
50
50
  ignoreLight: PD.BooleanParam;
51
51
  xrayShaded: PD.BooleanParam;
52
- allowTransparentBackfaces: PD.BooleanParam;
52
+ transparentBackfaces: PD.Select<string>;
53
53
  bumpFrequency: PD.Numeric;
54
54
  bumpAmplitude: PD.Numeric;
55
55
  alpha: PD.Numeric;
@@ -21,7 +21,7 @@ export declare const PolymerDirectionParams: {
21
21
  flatShaded: PD.BooleanParam;
22
22
  ignoreLight: PD.BooleanParam;
23
23
  xrayShaded: PD.BooleanParam;
24
- allowTransparentBackfaces: PD.BooleanParam;
24
+ transparentBackfaces: PD.Select<string>;
25
25
  bumpFrequency: PD.Numeric;
26
26
  bumpAmplitude: PD.Numeric;
27
27
  alpha: PD.Numeric;
@@ -24,7 +24,7 @@ export declare const PolymerGapParams: {
24
24
  flatShaded: PD.BooleanParam;
25
25
  ignoreLight: PD.BooleanParam;
26
26
  xrayShaded: PD.BooleanParam;
27
- allowTransparentBackfaces: PD.BooleanParam;
27
+ transparentBackfaces: PD.Select<string>;
28
28
  bumpFrequency: PD.Numeric;
29
29
  bumpAmplitude: PD.Numeric;
30
30
  alpha: PD.Numeric;
@@ -42,7 +42,7 @@ export declare const PolymerTraceParams: {
42
42
  flatShaded: PD.BooleanParam;
43
43
  ignoreLight: PD.BooleanParam;
44
44
  xrayShaded: PD.BooleanParam;
45
- allowTransparentBackfaces: PD.BooleanParam;
45
+ transparentBackfaces: PD.Select<string>;
46
46
  bumpFrequency: PD.Numeric;
47
47
  bumpAmplitude: PD.Numeric;
48
48
  alpha: PD.Numeric;
@@ -30,7 +30,7 @@ export declare const PolymerTubeParams: {
30
30
  flatShaded: PD.BooleanParam;
31
31
  ignoreLight: PD.BooleanParam;
32
32
  xrayShaded: PD.BooleanParam;
33
- allowTransparentBackfaces: PD.BooleanParam;
33
+ transparentBackfaces: PD.Select<string>;
34
34
  bumpFrequency: PD.Numeric;
35
35
  bumpAmplitude: PD.Numeric;
36
36
  alpha: PD.Numeric;
@@ -31,7 +31,7 @@ export interface QualityProps {
31
31
  doubleSided: boolean;
32
32
  xrayShaded: boolean;
33
33
  alpha: number;
34
- allowTransparentBackfaces: boolean;
34
+ transparentBackfaces: 'off' | 'on' | 'opaque';
35
35
  }
36
36
  export declare const DefaultQualityThresholds: {
37
37
  lowestElementCount: number;
@@ -165,7 +165,7 @@ export function getQualityProps(props, data) {
165
165
  // max resolution based on volume (for 'auto' quality)
166
166
  resolution = Math.max(resolution, volume / 500000000);
167
167
  resolution = Math.min(resolution, 20);
168
- if (!props.allowTransparentBackfaces && ((props.alpha !== undefined && props.alpha < 1) || !!props.xrayShaded)) {
168
+ if (props.transparentBackfaces === 'off' && ((props.alpha !== undefined && props.alpha < 1) || !!props.xrayShaded)) {
169
169
  doubleSided = false;
170
170
  }
171
171
  return {
@@ -93,7 +93,7 @@ export declare function IsosurfaceVisual(materialId: number, volume: Volume, pro
93
93
  flatShaded: PD.BooleanParam;
94
94
  ignoreLight: PD.BooleanParam;
95
95
  xrayShaded: PD.BooleanParam;
96
- allowTransparentBackfaces: PD.BooleanParam;
96
+ transparentBackfaces: PD.Select<string>;
97
97
  bumpFrequency: PD.Numeric;
98
98
  bumpAmplitude: PD.Numeric;
99
99
  alpha: PD.Numeric;
@@ -167,7 +167,7 @@ export declare const IsosurfaceMeshParams: {
167
167
  flatShaded: PD.BooleanParam;
168
168
  ignoreLight: PD.BooleanParam;
169
169
  xrayShaded: PD.BooleanParam;
170
- allowTransparentBackfaces: PD.BooleanParam;
170
+ transparentBackfaces: PD.Select<string>;
171
171
  bumpFrequency: PD.Numeric;
172
172
  bumpAmplitude: PD.Numeric;
173
173
  alpha: PD.Numeric;
@@ -330,7 +330,7 @@ export declare const IsosurfaceParams: {
330
330
  flatShaded: PD.BooleanParam;
331
331
  ignoreLight: PD.BooleanParam;
332
332
  xrayShaded: PD.BooleanParam;
333
- allowTransparentBackfaces: PD.BooleanParam;
333
+ transparentBackfaces: PD.Select<string>;
334
334
  bumpAmplitude: PD.Numeric;
335
335
  };
336
336
  export declare type IsosurfaceParams = typeof IsosurfaceParams;
@@ -406,7 +406,7 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
406
406
  flatShaded: PD.BooleanParam;
407
407
  ignoreLight: PD.BooleanParam;
408
408
  xrayShaded: PD.BooleanParam;
409
- allowTransparentBackfaces: PD.BooleanParam;
409
+ transparentBackfaces: PD.Select<string>;
410
410
  bumpAmplitude: PD.Numeric;
411
411
  };
412
412
  export declare type IsosurfaceRepresentation = VolumeRepresentation<IsosurfaceParams>;
@@ -483,6 +483,6 @@ export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvi
483
483
  flatShaded: PD.BooleanParam;
484
484
  ignoreLight: PD.BooleanParam;
485
485
  xrayShaded: PD.BooleanParam;
486
- allowTransparentBackfaces: PD.BooleanParam;
486
+ transparentBackfaces: PD.Select<string>;
487
487
  bumpAmplitude: PD.Numeric;
488
488
  }, "isosurface">;
@@ -82,7 +82,7 @@ export declare namespace VolumeRepresentationRegistry {
82
82
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
83
83
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
84
84
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
85
- allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
85
+ transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
86
86
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
87
87
  }, "isosurface">;
88
88
  slice: import("./representation").VolumeRepresentationProvider<{
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -9,14 +9,21 @@ import { ColorType } from '../mol-geo/geometry/color-data';
9
9
  import { ParamDefinition as PD } from '../mol-util/param-definition';
10
10
  import { ThemeDataContext, ThemeRegistry, ThemeProvider } from './theme';
11
11
  import { ScaleLegend, TableLegend } from '../mol-util/legend';
12
- import { TextureFilter } from '../mol-gl/webgl/texture';
12
+ import { Texture, TextureFilter } from '../mol-gl/webgl/texture';
13
+ import { Vec3, Vec4 } from '../mol-math/linear-algebra';
13
14
  export declare type LocationColor = (location: Location, isSecondary: boolean) => Color;
15
+ export interface ColorVolume {
16
+ colors: Texture;
17
+ dimension: Vec3;
18
+ transform: Vec4;
19
+ }
14
20
  export { ColorTheme };
15
21
  interface ColorTheme<P extends PD.Params> {
16
22
  readonly factory: ColorTheme.Factory<P>;
17
23
  readonly granularity: ColorType;
18
24
  readonly color: LocationColor;
19
25
  readonly props: Readonly<PD.Values<P>>;
26
+ readonly grid?: ColorVolume;
20
27
  /**
21
28
  * if palette is defined, 24bit RGB color value normalized to interval [0, 1]
22
29
  * is used as index to the colors
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -256,10 +256,8 @@ function resolveJobEntry(entry, structure, encoder) {
256
256
  encoder.writeCategory(_model_server_result, entry);
257
257
  encoder.writeCategory(_model_server_params, entry);
258
258
  if (entry.queryDefinition.niceName === 'Ligand') {
259
- if (encoder instanceof MolEncoder) {
260
- encoder.setComponentAtomData(ComponentAtom.Provider.get(structure.models[0]));
261
- }
262
259
  if (encoder instanceof MolEncoder || encoder instanceof Mol2Encoder) {
260
+ encoder.setComponentAtomData(ComponentAtom.Provider.get(structure.models[0]));
263
261
  encoder.setComponentBondData(ComponentBond.Provider.get(structure.models[0]));
264
262
  }
265
263
  }
@@ -3,4 +3,4 @@
3
3
  *
4
4
  * @author David Sehnal <david.sehnal@gmail.com>
5
5
  */
6
- export declare const VERSION = "0.9.8";
6
+ export declare const VERSION = "0.9.9";
@@ -3,4 +3,4 @@
3
3
  *
4
4
  * @author David Sehnal <david.sehnal@gmail.com>
5
5
  */
6
- export var VERSION = '0.9.8';
6
+ export var VERSION = '0.9.9';
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "molstar",
3
- "version": "3.6.1",
3
+ "version": "3.7.0",
4
4
  "description": "A comprehensive macromolecular library.",
5
5
  "homepage": "https://github.com/molstar/molstar#readme",
6
6
  "repository": {
@@ -94,23 +94,23 @@
94
94
  "@graphql-codegen/add": "^3.1.1",
95
95
  "@graphql-codegen/cli": "^2.6.2",
96
96
  "@graphql-codegen/time": "^3.1.1",
97
- "@graphql-codegen/typescript": "^2.4.7",
97
+ "@graphql-codegen/typescript": "^2.4.8",
98
98
  "@graphql-codegen/typescript-graphql-files-modules": "^2.1.1",
99
- "@graphql-codegen/typescript-graphql-request": "^4.4.2",
100
- "@graphql-codegen/typescript-operations": "^2.3.4",
99
+ "@graphql-codegen/typescript-graphql-request": "^4.4.5",
100
+ "@graphql-codegen/typescript-operations": "^2.3.5",
101
101
  "@types/cors": "^2.8.12",
102
102
  "@types/gl": "^4.1.0",
103
103
  "@types/jest": "^27.4.1",
104
- "@types/react": "^17.0.43",
105
- "@types/react-dom": "^17.0.14",
106
- "@typescript-eslint/eslint-plugin": "^5.14.0",
107
- "@typescript-eslint/parser": "^5.14.0",
104
+ "@types/react": "^18.0.1",
105
+ "@types/react-dom": "^18.0.0",
106
+ "@typescript-eslint/eslint-plugin": "^5.18.0",
107
+ "@typescript-eslint/parser": "^5.18.0",
108
108
  "benchmark": "^2.1.4",
109
- "concurrently": "^7.0.0",
109
+ "concurrently": "^7.1.0",
110
110
  "cpx2": "^4.2.0",
111
111
  "crypto-browserify": "^3.12.0",
112
112
  "css-loader": "^6.7.1",
113
- "eslint": "^8.11.0",
113
+ "eslint": "^8.13.0",
114
114
  "extra-watch-webpack-plugin": "^1.0.3",
115
115
  "file-loader": "^6.2.0",
116
116
  "fs-extra": "^10.0.1",
@@ -122,14 +122,14 @@
122
122
  "raw-loader": "^4.0.2",
123
123
  "react": "^18.0.0",
124
124
  "react-dom": "^18.0.0",
125
- "sass": "^1.49.9",
125
+ "sass": "^1.50.0",
126
126
  "sass-loader": "^12.6.0",
127
- "simple-git": "^3.3.0",
127
+ "simple-git": "^3.5.0",
128
128
  "stream-browserify": "^3.0.0",
129
129
  "style-loader": "^3.3.1",
130
- "ts-jest": "^27.1.3",
130
+ "ts-jest": "^27.1.4",
131
131
  "typescript": "^4.6.3",
132
- "webpack": "^5.70.0",
132
+ "webpack": "^5.72.0",
133
133
  "webpack-cli": "^4.9.2"
134
134
  },
135
135
  "dependencies": {
@@ -141,7 +141,7 @@
141
141
  "@types/node-fetch": "^2.6.1",
142
142
  "@types/swagger-ui-dist": "3.30.1",
143
143
  "argparse": "^2.0.1",
144
- "body-parser": "^1.19.2",
144
+ "body-parser": "^1.20.0",
145
145
  "compression": "^1.7.4",
146
146
  "cors": "^2.8.5",
147
147
  "express": "^4.17.3",
@@ -150,7 +150,7 @@
150
150
  "immutable": "^4.0.0",
151
151
  "node-fetch": "^2.6.7",
152
152
  "rxjs": "^7.5.5",
153
- "swagger-ui-dist": "^4.6.2",
153
+ "swagger-ui-dist": "^4.10.3",
154
154
  "tslib": "^2.3.1",
155
155
  "util.promisify": "^1.1.1",
156
156
  "xhr2": "^0.2.1"