molstar 3.6.1 → 3.7.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/lib/commonjs/examples/alpha-orbitals/index.js +20 -15
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/anvil/representation.d.ts +4 -4
- package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/color-data.d.ts +2 -8
- package/lib/commonjs/mol-geo/geometry/color-data.js +16 -3
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -2
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -2
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -2
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +15 -4
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderable/cylinders.js +2 -2
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderable/mesh.js +2 -2
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderable/spheres.js +2 -2
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +2 -1
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +2 -2
- package/lib/commonjs/mol-gl/renderer.js +54 -23
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-io/writer/ligand-encoder.d.ts +4 -2
- package/lib/commonjs/mol-io/writer/ligand-encoder.js +9 -4
- package/lib/commonjs/mol-io/writer/mol/encoder.js +16 -4
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +17 -4
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -3
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js +0 -1
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -1
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +6 -6
- package/lib/commonjs/mol-plugin-ui/base.d.ts +3 -1
- package/lib/commonjs/mol-plugin-ui/controls/color.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/controls/common.d.ts +2 -0
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +21 -7
- package/lib/commonjs/mol-plugin-ui/plugin.d.ts +2 -0
- package/lib/commonjs/mol-plugin-ui/plugin.js +2 -2
- package/lib/commonjs/mol-plugin-ui/spec.d.ts +1 -0
- package/lib/commonjs/mol-plugin-ui/viewport/help.d.ts +4 -1
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -1
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/params.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/registry.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/util.d.ts +1 -1
- package/lib/commonjs/mol-repr/util.js +1 -1
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +5 -5
- package/lib/commonjs/mol-repr/volume/registry.d.ts +1 -1
- package/lib/commonjs/mol-theme/color.d.ts +9 -2
- package/lib/commonjs/mol-theme/color.js +1 -1
- package/lib/commonjs/servers/model/server/query.js +1 -3
- package/lib/commonjs/servers/model/version.d.ts +1 -1
- package/lib/commonjs/servers/model/version.js +1 -1
- package/lib/examples/alpha-orbitals/index.js +20 -15
- package/lib/extensions/anvil/behavior.d.ts +1 -1
- package/lib/extensions/anvil/representation.d.ts +4 -4
- package/lib/extensions/cellpack/representation.d.ts +1 -1
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -1
- package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
- package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -5
- package/lib/mol-canvas3d/canvas3d.d.ts +2 -2
- package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -1
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/mol-canvas3d/helper/helper.d.ts +2 -2
- package/lib/mol-canvas3d/passes/image.d.ts +1 -1
- package/lib/mol-geo/geometry/color-data.d.ts +2 -8
- package/lib/mol-geo/geometry/color-data.js +16 -3
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.js +3 -2
- package/lib/mol-geo/geometry/mesh/mesh.d.ts +1 -1
- package/lib/mol-geo/geometry/mesh/mesh.js +3 -2
- package/lib/mol-geo/geometry/spheres/spheres.d.ts +1 -1
- package/lib/mol-geo/geometry/spheres/spheres.js +3 -2
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +15 -4
- package/lib/mol-gl/renderable/cylinders.d.ts +2 -1
- package/lib/mol-gl/renderable/cylinders.js +2 -2
- package/lib/mol-gl/renderable/mesh.d.ts +2 -1
- package/lib/mol-gl/renderable/mesh.js +2 -2
- package/lib/mol-gl/renderable/spheres.d.ts +2 -1
- package/lib/mol-gl/renderable/spheres.js +2 -2
- package/lib/mol-gl/renderable/texture-mesh.d.ts +2 -1
- package/lib/mol-gl/renderable/texture-mesh.js +2 -2
- package/lib/mol-gl/renderer.js +54 -23
- package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/mol-io/writer/ligand-encoder.d.ts +4 -2
- package/lib/mol-io/writer/ligand-encoder.js +9 -4
- package/lib/mol-io/writer/mol/encoder.js +16 -4
- package/lib/mol-io/writer/mol2/encoder.js +17 -4
- package/lib/mol-model-formats/shape/ply.d.ts +2 -2
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -3
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/util.js +0 -1
- package/lib/mol-plugin/commands.d.ts +1 -1
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +3 -3
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/transforms/representation.d.ts +6 -6
- package/lib/mol-plugin-ui/base.d.ts +3 -1
- package/lib/mol-plugin-ui/controls/color.d.ts +1 -1
- package/lib/mol-plugin-ui/controls/common.d.ts +2 -0
- package/lib/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
- package/lib/mol-plugin-ui/hooks/use-behavior.js +20 -7
- package/lib/mol-plugin-ui/plugin.d.ts +2 -0
- package/lib/mol-plugin-ui/plugin.js +2 -2
- package/lib/mol-plugin-ui/spec.d.ts +1 -0
- package/lib/mol-plugin-ui/viewport/help.d.ts +4 -1
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -1
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -1
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -1
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
- package/lib/mol-repr/structure/complex-visual.d.ts +3 -3
- package/lib/mol-repr/structure/params.d.ts +4 -4
- package/lib/mol-repr/structure/registry.d.ts +10 -10
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -3
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -3
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -3
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -3
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -3
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -3
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -3
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -3
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -3
- package/lib/mol-repr/structure/units-visual.d.ts +4 -4
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -2
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -2
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +2 -2
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -4
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
- package/lib/mol-repr/util.d.ts +1 -1
- package/lib/mol-repr/util.js +1 -1
- package/lib/mol-repr/volume/isosurface.d.ts +5 -5
- package/lib/mol-repr/volume/registry.d.ts +1 -1
- package/lib/mol-theme/color.d.ts +9 -2
- package/lib/mol-theme/color.js +1 -1
- package/lib/servers/model/server/query.js +1 -3
- package/lib/servers/model/version.d.ts +1 -1
- package/lib/servers/model/version.js +1 -1
- package/package.json +16 -16
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@@ -33,7 +33,7 @@ export declare const InterUnitBondCylinderParams: {
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-
|
|
23
|
+
transparentBackfaces: PD.Select<string>;
|
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24
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|
bumpFrequency: PD.Numeric;
|
|
25
25
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bumpAmplitude: PD.Numeric;
|
|
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alpha: PD.Numeric;
|
|
@@ -26,7 +26,7 @@ export declare const GaussianSurfaceMeshParams: {
|
|
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26
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flatShaded: PD.BooleanParam;
|
|
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ignoreLight: PD.BooleanParam;
|
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xrayShaded: PD.BooleanParam;
|
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+
transparentBackfaces: PD.Select<string>;
|
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|
|
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|
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|
|
@@ -66,7 +66,7 @@ export declare const StructureGaussianSurfaceMeshParams: {
|
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66
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|
flatShaded: PD.BooleanParam;
|
|
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|
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|
|
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xrayShaded: PD.BooleanParam;
|
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-
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+
transparentBackfaces: PD.Select<string>;
|
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|
|
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|
bumpAmplitude: PD.Numeric;
|
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alpha: PD.Numeric;
|
|
@@ -106,7 +106,7 @@ export declare function GaussianSurfaceVisual(materialId: number, structure: Str
|
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xrayShaded: PD.BooleanParam;
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-
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transparentBackfaces: PD.Select<string>;
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bumpAmplitude: PD.Numeric;
|
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alpha: PD.Numeric;
|
|
@@ -145,7 +145,7 @@ export declare function StructureGaussianSurfaceVisual(materialId: number, struc
|
|
|
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|
flatShaded: PD.BooleanParam;
|
|
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ignoreLight: PD.BooleanParam;
|
|
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xrayShaded: PD.BooleanParam;
|
|
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-
|
|
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|
+
transparentBackfaces: PD.Select<string>;
|
|
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bumpFrequency: PD.Numeric;
|
|
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|
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|
alpha: PD.Numeric;
|
|
@@ -22,7 +22,7 @@ export declare const MolecularSurfaceMeshParams: {
|
|
|
22
22
|
flatShaded: PD.BooleanParam;
|
|
23
23
|
ignoreLight: PD.BooleanParam;
|
|
24
24
|
xrayShaded: PD.BooleanParam;
|
|
25
|
-
|
|
25
|
+
transparentBackfaces: PD.Select<string>;
|
|
26
26
|
bumpFrequency: PD.Numeric;
|
|
27
27
|
bumpAmplitude: PD.Numeric;
|
|
28
28
|
alpha: PD.Numeric;
|
|
@@ -24,7 +24,7 @@ export declare const NucleotideBlockParams: {
|
|
|
24
24
|
flatShaded: PD.BooleanParam;
|
|
25
25
|
ignoreLight: PD.BooleanParam;
|
|
26
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|
xrayShaded: PD.BooleanParam;
|
|
27
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-
|
|
27
|
+
transparentBackfaces: PD.Select<string>;
|
|
28
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|
bumpFrequency: PD.Numeric;
|
|
29
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|
bumpAmplitude: PD.Numeric;
|
|
30
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|
alpha: PD.Numeric;
|
|
@@ -27,7 +27,7 @@ export declare const NucleotideRingParams: {
|
|
|
27
27
|
flatShaded: PD.BooleanParam;
|
|
28
28
|
ignoreLight: PD.BooleanParam;
|
|
29
29
|
xrayShaded: PD.BooleanParam;
|
|
30
|
-
|
|
30
|
+
transparentBackfaces: PD.Select<string>;
|
|
31
31
|
bumpFrequency: PD.Numeric;
|
|
32
32
|
bumpAmplitude: PD.Numeric;
|
|
33
33
|
alpha: PD.Numeric;
|
|
@@ -19,7 +19,7 @@ export declare const OrientationEllipsoidMeshParams: {
|
|
|
19
19
|
flatShaded: PD.BooleanParam;
|
|
20
20
|
ignoreLight: PD.BooleanParam;
|
|
21
21
|
xrayShaded: PD.BooleanParam;
|
|
22
|
-
|
|
22
|
+
transparentBackfaces: PD.Select<string>;
|
|
23
23
|
bumpFrequency: PD.Numeric;
|
|
24
24
|
bumpAmplitude: PD.Numeric;
|
|
25
25
|
alpha: PD.Numeric;
|
|
@@ -17,7 +17,7 @@ export declare const PolymerBackboneCylinderParams: {
|
|
|
17
17
|
doubleSided: PD.BooleanParam;
|
|
18
18
|
ignoreLight: PD.BooleanParam;
|
|
19
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|
xrayShaded: PD.BooleanParam;
|
|
20
|
-
|
|
20
|
+
transparentBackfaces: PD.Select<string>;
|
|
21
21
|
bumpFrequency: PD.Numeric;
|
|
22
22
|
bumpAmplitude: PD.Numeric;
|
|
23
23
|
alpha: PD.Numeric;
|
|
@@ -51,7 +51,7 @@ export declare function PolymerBackboneCylinderVisual(materialId: number, struct
|
|
|
51
51
|
doubleSided: PD.BooleanParam;
|
|
52
52
|
ignoreLight: PD.BooleanParam;
|
|
53
53
|
xrayShaded: PD.BooleanParam;
|
|
54
|
-
|
|
54
|
+
transparentBackfaces: PD.Select<string>;
|
|
55
55
|
bumpFrequency: PD.Numeric;
|
|
56
56
|
bumpAmplitude: PD.Numeric;
|
|
57
57
|
alpha: PD.Numeric;
|
|
@@ -16,7 +16,7 @@ export declare const PolymerBackboneSphereParams: {
|
|
|
16
16
|
doubleSided: PD.BooleanParam;
|
|
17
17
|
ignoreLight: PD.BooleanParam;
|
|
18
18
|
xrayShaded: PD.BooleanParam;
|
|
19
|
-
|
|
19
|
+
transparentBackfaces: PD.Select<string>;
|
|
20
20
|
bumpFrequency: PD.Numeric;
|
|
21
21
|
bumpAmplitude: PD.Numeric;
|
|
22
22
|
alpha: PD.Numeric;
|
|
@@ -49,7 +49,7 @@ export declare function PolymerBackboneSphereVisual(materialId: number, structur
|
|
|
49
49
|
doubleSided: PD.BooleanParam;
|
|
50
50
|
ignoreLight: PD.BooleanParam;
|
|
51
51
|
xrayShaded: PD.BooleanParam;
|
|
52
|
-
|
|
52
|
+
transparentBackfaces: PD.Select<string>;
|
|
53
53
|
bumpFrequency: PD.Numeric;
|
|
54
54
|
bumpAmplitude: PD.Numeric;
|
|
55
55
|
alpha: PD.Numeric;
|
|
@@ -21,7 +21,7 @@ export declare const PolymerDirectionParams: {
|
|
|
21
21
|
flatShaded: PD.BooleanParam;
|
|
22
22
|
ignoreLight: PD.BooleanParam;
|
|
23
23
|
xrayShaded: PD.BooleanParam;
|
|
24
|
-
|
|
24
|
+
transparentBackfaces: PD.Select<string>;
|
|
25
25
|
bumpFrequency: PD.Numeric;
|
|
26
26
|
bumpAmplitude: PD.Numeric;
|
|
27
27
|
alpha: PD.Numeric;
|
|
@@ -24,7 +24,7 @@ export declare const PolymerGapParams: {
|
|
|
24
24
|
flatShaded: PD.BooleanParam;
|
|
25
25
|
ignoreLight: PD.BooleanParam;
|
|
26
26
|
xrayShaded: PD.BooleanParam;
|
|
27
|
-
|
|
27
|
+
transparentBackfaces: PD.Select<string>;
|
|
28
28
|
bumpFrequency: PD.Numeric;
|
|
29
29
|
bumpAmplitude: PD.Numeric;
|
|
30
30
|
alpha: PD.Numeric;
|
|
@@ -42,7 +42,7 @@ export declare const PolymerTraceParams: {
|
|
|
42
42
|
flatShaded: PD.BooleanParam;
|
|
43
43
|
ignoreLight: PD.BooleanParam;
|
|
44
44
|
xrayShaded: PD.BooleanParam;
|
|
45
|
-
|
|
45
|
+
transparentBackfaces: PD.Select<string>;
|
|
46
46
|
bumpFrequency: PD.Numeric;
|
|
47
47
|
bumpAmplitude: PD.Numeric;
|
|
48
48
|
alpha: PD.Numeric;
|
|
@@ -30,7 +30,7 @@ export declare const PolymerTubeParams: {
|
|
|
30
30
|
flatShaded: PD.BooleanParam;
|
|
31
31
|
ignoreLight: PD.BooleanParam;
|
|
32
32
|
xrayShaded: PD.BooleanParam;
|
|
33
|
-
|
|
33
|
+
transparentBackfaces: PD.Select<string>;
|
|
34
34
|
bumpFrequency: PD.Numeric;
|
|
35
35
|
bumpAmplitude: PD.Numeric;
|
|
36
36
|
alpha: PD.Numeric;
|
package/lib/mol-repr/util.d.ts
CHANGED
|
@@ -31,7 +31,7 @@ export interface QualityProps {
|
|
|
31
31
|
doubleSided: boolean;
|
|
32
32
|
xrayShaded: boolean;
|
|
33
33
|
alpha: number;
|
|
34
|
-
|
|
34
|
+
transparentBackfaces: 'off' | 'on' | 'opaque';
|
|
35
35
|
}
|
|
36
36
|
export declare const DefaultQualityThresholds: {
|
|
37
37
|
lowestElementCount: number;
|
package/lib/mol-repr/util.js
CHANGED
|
@@ -165,7 +165,7 @@ export function getQualityProps(props, data) {
|
|
|
165
165
|
// max resolution based on volume (for 'auto' quality)
|
|
166
166
|
resolution = Math.max(resolution, volume / 500000000);
|
|
167
167
|
resolution = Math.min(resolution, 20);
|
|
168
|
-
if (
|
|
168
|
+
if (props.transparentBackfaces === 'off' && ((props.alpha !== undefined && props.alpha < 1) || !!props.xrayShaded)) {
|
|
169
169
|
doubleSided = false;
|
|
170
170
|
}
|
|
171
171
|
return {
|
|
@@ -93,7 +93,7 @@ export declare function IsosurfaceVisual(materialId: number, volume: Volume, pro
|
|
|
93
93
|
flatShaded: PD.BooleanParam;
|
|
94
94
|
ignoreLight: PD.BooleanParam;
|
|
95
95
|
xrayShaded: PD.BooleanParam;
|
|
96
|
-
|
|
96
|
+
transparentBackfaces: PD.Select<string>;
|
|
97
97
|
bumpFrequency: PD.Numeric;
|
|
98
98
|
bumpAmplitude: PD.Numeric;
|
|
99
99
|
alpha: PD.Numeric;
|
|
@@ -167,7 +167,7 @@ export declare const IsosurfaceMeshParams: {
|
|
|
167
167
|
flatShaded: PD.BooleanParam;
|
|
168
168
|
ignoreLight: PD.BooleanParam;
|
|
169
169
|
xrayShaded: PD.BooleanParam;
|
|
170
|
-
|
|
170
|
+
transparentBackfaces: PD.Select<string>;
|
|
171
171
|
bumpFrequency: PD.Numeric;
|
|
172
172
|
bumpAmplitude: PD.Numeric;
|
|
173
173
|
alpha: PD.Numeric;
|
|
@@ -330,7 +330,7 @@ export declare const IsosurfaceParams: {
|
|
|
330
330
|
flatShaded: PD.BooleanParam;
|
|
331
331
|
ignoreLight: PD.BooleanParam;
|
|
332
332
|
xrayShaded: PD.BooleanParam;
|
|
333
|
-
|
|
333
|
+
transparentBackfaces: PD.Select<string>;
|
|
334
334
|
bumpAmplitude: PD.Numeric;
|
|
335
335
|
};
|
|
336
336
|
export declare type IsosurfaceParams = typeof IsosurfaceParams;
|
|
@@ -406,7 +406,7 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
|
|
|
406
406
|
flatShaded: PD.BooleanParam;
|
|
407
407
|
ignoreLight: PD.BooleanParam;
|
|
408
408
|
xrayShaded: PD.BooleanParam;
|
|
409
|
-
|
|
409
|
+
transparentBackfaces: PD.Select<string>;
|
|
410
410
|
bumpAmplitude: PD.Numeric;
|
|
411
411
|
};
|
|
412
412
|
export declare type IsosurfaceRepresentation = VolumeRepresentation<IsosurfaceParams>;
|
|
@@ -483,6 +483,6 @@ export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvi
|
|
|
483
483
|
flatShaded: PD.BooleanParam;
|
|
484
484
|
ignoreLight: PD.BooleanParam;
|
|
485
485
|
xrayShaded: PD.BooleanParam;
|
|
486
|
-
|
|
486
|
+
transparentBackfaces: PD.Select<string>;
|
|
487
487
|
bumpAmplitude: PD.Numeric;
|
|
488
488
|
}, "isosurface">;
|
|
@@ -82,7 +82,7 @@ export declare namespace VolumeRepresentationRegistry {
|
|
|
82
82
|
flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
83
83
|
ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
84
84
|
xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
85
|
-
|
|
85
|
+
transparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.Select<string>;
|
|
86
86
|
bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
87
87
|
}, "isosurface">;
|
|
88
88
|
slice: import("./representation").VolumeRepresentationProvider<{
|
package/lib/mol-theme/color.d.ts
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2018-
|
|
2
|
+
* Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
*/
|
|
@@ -9,14 +9,21 @@ import { ColorType } from '../mol-geo/geometry/color-data';
|
|
|
9
9
|
import { ParamDefinition as PD } from '../mol-util/param-definition';
|
|
10
10
|
import { ThemeDataContext, ThemeRegistry, ThemeProvider } from './theme';
|
|
11
11
|
import { ScaleLegend, TableLegend } from '../mol-util/legend';
|
|
12
|
-
import { TextureFilter } from '../mol-gl/webgl/texture';
|
|
12
|
+
import { Texture, TextureFilter } from '../mol-gl/webgl/texture';
|
|
13
|
+
import { Vec3, Vec4 } from '../mol-math/linear-algebra';
|
|
13
14
|
export declare type LocationColor = (location: Location, isSecondary: boolean) => Color;
|
|
15
|
+
export interface ColorVolume {
|
|
16
|
+
colors: Texture;
|
|
17
|
+
dimension: Vec3;
|
|
18
|
+
transform: Vec4;
|
|
19
|
+
}
|
|
14
20
|
export { ColorTheme };
|
|
15
21
|
interface ColorTheme<P extends PD.Params> {
|
|
16
22
|
readonly factory: ColorTheme.Factory<P>;
|
|
17
23
|
readonly granularity: ColorType;
|
|
18
24
|
readonly color: LocationColor;
|
|
19
25
|
readonly props: Readonly<PD.Values<P>>;
|
|
26
|
+
readonly grid?: ColorVolume;
|
|
20
27
|
/**
|
|
21
28
|
* if palette is defined, 24bit RGB color value normalized to interval [0, 1]
|
|
22
29
|
* is used as index to the colors
|
package/lib/mol-theme/color.js
CHANGED
|
@@ -256,10 +256,8 @@ function resolveJobEntry(entry, structure, encoder) {
|
|
|
256
256
|
encoder.writeCategory(_model_server_result, entry);
|
|
257
257
|
encoder.writeCategory(_model_server_params, entry);
|
|
258
258
|
if (entry.queryDefinition.niceName === 'Ligand') {
|
|
259
|
-
if (encoder instanceof MolEncoder) {
|
|
260
|
-
encoder.setComponentAtomData(ComponentAtom.Provider.get(structure.models[0]));
|
|
261
|
-
}
|
|
262
259
|
if (encoder instanceof MolEncoder || encoder instanceof Mol2Encoder) {
|
|
260
|
+
encoder.setComponentAtomData(ComponentAtom.Provider.get(structure.models[0]));
|
|
263
261
|
encoder.setComponentBondData(ComponentBond.Provider.get(structure.models[0]));
|
|
264
262
|
}
|
|
265
263
|
}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "molstar",
|
|
3
|
-
"version": "3.
|
|
3
|
+
"version": "3.7.0",
|
|
4
4
|
"description": "A comprehensive macromolecular library.",
|
|
5
5
|
"homepage": "https://github.com/molstar/molstar#readme",
|
|
6
6
|
"repository": {
|
|
@@ -94,23 +94,23 @@
|
|
|
94
94
|
"@graphql-codegen/add": "^3.1.1",
|
|
95
95
|
"@graphql-codegen/cli": "^2.6.2",
|
|
96
96
|
"@graphql-codegen/time": "^3.1.1",
|
|
97
|
-
"@graphql-codegen/typescript": "^2.4.
|
|
97
|
+
"@graphql-codegen/typescript": "^2.4.8",
|
|
98
98
|
"@graphql-codegen/typescript-graphql-files-modules": "^2.1.1",
|
|
99
|
-
"@graphql-codegen/typescript-graphql-request": "^4.4.
|
|
100
|
-
"@graphql-codegen/typescript-operations": "^2.3.
|
|
99
|
+
"@graphql-codegen/typescript-graphql-request": "^4.4.5",
|
|
100
|
+
"@graphql-codegen/typescript-operations": "^2.3.5",
|
|
101
101
|
"@types/cors": "^2.8.12",
|
|
102
102
|
"@types/gl": "^4.1.0",
|
|
103
103
|
"@types/jest": "^27.4.1",
|
|
104
|
-
"@types/react": "^
|
|
105
|
-
"@types/react-dom": "^
|
|
106
|
-
"@typescript-eslint/eslint-plugin": "^5.
|
|
107
|
-
"@typescript-eslint/parser": "^5.
|
|
104
|
+
"@types/react": "^18.0.1",
|
|
105
|
+
"@types/react-dom": "^18.0.0",
|
|
106
|
+
"@typescript-eslint/eslint-plugin": "^5.18.0",
|
|
107
|
+
"@typescript-eslint/parser": "^5.18.0",
|
|
108
108
|
"benchmark": "^2.1.4",
|
|
109
|
-
"concurrently": "^7.
|
|
109
|
+
"concurrently": "^7.1.0",
|
|
110
110
|
"cpx2": "^4.2.0",
|
|
111
111
|
"crypto-browserify": "^3.12.0",
|
|
112
112
|
"css-loader": "^6.7.1",
|
|
113
|
-
"eslint": "^8.
|
|
113
|
+
"eslint": "^8.13.0",
|
|
114
114
|
"extra-watch-webpack-plugin": "^1.0.3",
|
|
115
115
|
"file-loader": "^6.2.0",
|
|
116
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"fs-extra": "^10.0.1",
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@@ -122,14 +122,14 @@
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"raw-loader": "^4.0.2",
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"react": "^18.0.0",
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"react-dom": "^18.0.0",
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125
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-
"sass": "^1.
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125
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+
"sass": "^1.50.0",
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"sass-loader": "^12.6.0",
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127
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-
"simple-git": "^3.
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+
"simple-git": "^3.5.0",
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"stream-browserify": "^3.0.0",
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"style-loader": "^3.3.1",
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-
"ts-jest": "^27.1.
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+
"ts-jest": "^27.1.4",
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"typescript": "^4.6.3",
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132
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-
"webpack": "^5.
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+
"webpack": "^5.72.0",
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"webpack-cli": "^4.9.2"
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},
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"dependencies": {
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@@ -141,7 +141,7 @@
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"@types/node-fetch": "^2.6.1",
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"@types/swagger-ui-dist": "3.30.1",
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"argparse": "^2.0.1",
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144
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-
"body-parser": "^1.
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+
"body-parser": "^1.20.0",
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"compression": "^1.7.4",
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"cors": "^2.8.5",
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"express": "^4.17.3",
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@@ -150,7 +150,7 @@
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"immutable": "^4.0.0",
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151
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"node-fetch": "^2.6.7",
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152
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"rxjs": "^7.5.5",
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153
|
-
"swagger-ui-dist": "^4.
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153
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+
"swagger-ui-dist": "^4.10.3",
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154
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"tslib": "^2.3.1",
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"util.promisify": "^1.1.1",
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"xhr2": "^0.2.1"
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