molstar 3.43.0 → 3.44.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (169) hide show
  1. package/build/viewer/molstar.js +1 -1
  2. package/lib/apps/viewer/app.js +2 -2
  3. package/lib/cli/mvs/mvs-print-schema.d.ts +11 -0
  4. package/lib/cli/mvs/mvs-print-schema.js +32 -0
  5. package/lib/{commonjs/examples → cli}/mvs/mvs-render.d.ts +2 -2
  6. package/lib/{examples → cli}/mvs/mvs-render.js +5 -21
  7. package/lib/{commonjs/examples → cli}/mvs/mvs-validate.d.ts +1 -1
  8. package/lib/{examples → cli}/mvs/mvs-validate.js +1 -1
  9. package/lib/commonjs/apps/viewer/app.js +2 -2
  10. package/lib/commonjs/cli/mvs/mvs-print-schema.d.ts +11 -0
  11. package/lib/commonjs/cli/mvs/mvs-print-schema.js +34 -0
  12. package/lib/{examples → commonjs/cli}/mvs/mvs-render.d.ts +2 -2
  13. package/lib/commonjs/{examples → cli}/mvs/mvs-render.js +5 -21
  14. package/lib/{examples → commonjs/cli}/mvs/mvs-validate.d.ts +1 -1
  15. package/lib/commonjs/{examples → cli}/mvs/mvs-validate.js +1 -1
  16. package/lib/commonjs/extensions/mvs/behavior.js +1 -1
  17. package/lib/commonjs/extensions/mvs/camera.js +1 -1
  18. package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +10 -3
  19. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +2 -30
  20. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +1 -15
  21. package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +24 -29
  22. package/lib/commonjs/extensions/mvs/components/formats.d.ts +12 -3
  23. package/lib/commonjs/extensions/mvs/components/formats.js +18 -8
  24. package/lib/commonjs/extensions/mvs/components/selector.d.ts +2 -0
  25. package/lib/commonjs/extensions/mvs/components/selector.js +3 -1
  26. package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
  27. package/lib/commonjs/extensions/mvs/helpers/schemas.js +1 -1
  28. package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +5 -6
  29. package/lib/commonjs/extensions/mvs/helpers/utils.js +8 -14
  30. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +10 -13
  31. package/lib/commonjs/extensions/mvs/load-helpers.js +58 -3
  32. package/lib/commonjs/extensions/mvs/load.d.ts +3 -1
  33. package/lib/commonjs/extensions/mvs/load.js +24 -26
  34. package/lib/commonjs/extensions/mvs/mvs-data.d.ts +1 -1
  35. package/lib/commonjs/extensions/mvs/mvs-data.js +1 -1
  36. package/lib/commonjs/extensions/mvs/tree/generic/params-schema.d.ts +1 -1
  37. package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +9 -9
  38. package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +14 -9
  39. package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.d.ts +5 -0
  40. package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +45 -1
  41. package/lib/commonjs/extensions/mvs/tree/molstar/conversion.d.ts +1 -1
  42. package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +3 -1
  43. package/lib/commonjs/extensions/mvs/tree/molstar/molstar-tree.d.ts +2 -2
  44. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +7 -6
  45. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +11 -12
  46. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-tree.d.ts +8 -8
  47. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-tree.js +4 -4
  48. package/lib/commonjs/extensions/mvs/tree/mvs/param-types.d.ts +10 -11
  49. package/lib/commonjs/extensions/mvs/tree/mvs/param-types.js +3 -2
  50. package/lib/commonjs/mol-geo/geometry/mesh/mesh-builder.d.ts +2 -0
  51. package/lib/commonjs/mol-geo/geometry/mesh/mesh-builder.js +23 -0
  52. package/lib/commonjs/mol-geo/geometry/text/font-atlas.d.ts +6 -1
  53. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +28 -5
  54. package/lib/commonjs/mol-io/writer/ligand-encoder.d.ts +2 -2
  55. package/lib/commonjs/mol-io/writer/ligand-encoder.js +7 -4
  56. package/lib/commonjs/mol-io/writer/mol/encoder.js +1 -1
  57. package/lib/commonjs/mol-io/writer/mol2/encoder.js +1 -1
  58. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +2 -2
  59. package/lib/commonjs/mol-model-formats/structure/pdb/conect.d.ts +1 -0
  60. package/lib/commonjs/mol-model-formats/structure/pdb/conect.js +7 -0
  61. package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.d.ts +1 -0
  62. package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +10 -1
  63. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +3 -2
  64. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -1
  65. package/lib/commonjs/mol-plugin-ui/controls/icons.d.ts +3 -1
  66. package/lib/commonjs/mol-plugin-ui/controls/icons.js +11 -5
  67. package/lib/commonjs/mol-plugin-ui/plugin.d.ts +1 -0
  68. package/lib/commonjs/mol-plugin-ui/plugin.js +3 -3
  69. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +1 -1
  70. package/lib/commonjs/mol-repr/shape/loci/label.js +1 -1
  71. package/lib/commonjs/mol-repr/structure/registry.d.ts +9 -2
  72. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +1 -1
  73. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +11 -2
  74. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +29 -7
  75. package/lib/commonjs/mol-repr/structure/representation/cartoon.js +10 -3
  76. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +1 -1
  77. package/lib/commonjs/mol-repr/structure/representation/line.js +11 -2
  78. package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +83 -0
  79. package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-bond.js +304 -0
  80. package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +87 -0
  81. package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-element.js +264 -0
  82. package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +51 -0
  83. package/lib/commonjs/mol-repr/structure/visual/nucleotide-atomic-ring-fill.js +173 -0
  84. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +4 -1
  85. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.js +30 -43
  86. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +4 -1
  87. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.js +48 -87
  88. package/lib/commonjs/mol-repr/structure/visual/util/nucleotide.d.ts +104 -1
  89. package/lib/commonjs/mol-repr/structure/visual/util/nucleotide.js +114 -2
  90. package/lib/commonjs/servers/model/version.d.ts +2 -2
  91. package/lib/commonjs/servers/model/version.js +2 -2
  92. package/lib/extensions/mvs/behavior.js +1 -1
  93. package/lib/extensions/mvs/camera.js +1 -1
  94. package/lib/extensions/mvs/components/annotation-structure-component.js +10 -3
  95. package/lib/extensions/mvs/components/custom-label/representation.d.ts +2 -30
  96. package/lib/extensions/mvs/components/custom-label/visual.d.ts +1 -15
  97. package/lib/extensions/mvs/components/custom-label/visual.js +24 -29
  98. package/lib/extensions/mvs/components/formats.d.ts +12 -3
  99. package/lib/extensions/mvs/components/formats.js +18 -8
  100. package/lib/extensions/mvs/components/selector.d.ts +2 -0
  101. package/lib/extensions/mvs/components/selector.js +2 -1
  102. package/lib/extensions/mvs/helpers/schemas.d.ts +1 -1
  103. package/lib/extensions/mvs/helpers/schemas.js +1 -1
  104. package/lib/extensions/mvs/helpers/utils.d.ts +5 -6
  105. package/lib/extensions/mvs/helpers/utils.js +7 -11
  106. package/lib/extensions/mvs/load-helpers.d.ts +10 -13
  107. package/lib/extensions/mvs/load-helpers.js +56 -3
  108. package/lib/extensions/mvs/load.d.ts +3 -1
  109. package/lib/extensions/mvs/load.js +25 -27
  110. package/lib/extensions/mvs/mvs-data.d.ts +1 -1
  111. package/lib/extensions/mvs/mvs-data.js +1 -1
  112. package/lib/extensions/mvs/tree/generic/params-schema.d.ts +1 -1
  113. package/lib/extensions/mvs/tree/generic/params-schema.js +9 -9
  114. package/lib/extensions/mvs/tree/generic/tree-schema.js +14 -9
  115. package/lib/extensions/mvs/tree/generic/tree-utils.d.ts +5 -0
  116. package/lib/extensions/mvs/tree/generic/tree-utils.js +43 -1
  117. package/lib/extensions/mvs/tree/molstar/conversion.d.ts +1 -1
  118. package/lib/extensions/mvs/tree/molstar/conversion.js +4 -2
  119. package/lib/extensions/mvs/tree/molstar/molstar-tree.d.ts +2 -2
  120. package/lib/extensions/mvs/tree/mvs/mvs-builder.d.ts +7 -6
  121. package/lib/extensions/mvs/tree/mvs/mvs-builder.js +11 -12
  122. package/lib/extensions/mvs/tree/mvs/mvs-tree.d.ts +8 -8
  123. package/lib/extensions/mvs/tree/mvs/mvs-tree.js +4 -4
  124. package/lib/extensions/mvs/tree/mvs/param-types.d.ts +10 -11
  125. package/lib/extensions/mvs/tree/mvs/param-types.js +4 -3
  126. package/lib/mol-geo/geometry/mesh/mesh-builder.d.ts +2 -0
  127. package/lib/mol-geo/geometry/mesh/mesh-builder.js +23 -0
  128. package/lib/mol-geo/geometry/text/font-atlas.d.ts +6 -1
  129. package/lib/mol-geo/geometry/text/font-atlas.js +26 -4
  130. package/lib/mol-io/writer/ligand-encoder.d.ts +2 -2
  131. package/lib/mol-io/writer/ligand-encoder.js +7 -4
  132. package/lib/mol-io/writer/mol/encoder.js +1 -1
  133. package/lib/mol-io/writer/mol2/encoder.js +1 -1
  134. package/lib/mol-model-formats/structure/common/component.d.ts +2 -2
  135. package/lib/mol-model-formats/structure/pdb/conect.d.ts +1 -0
  136. package/lib/mol-model-formats/structure/pdb/conect.js +7 -0
  137. package/lib/mol-model-formats/structure/property/bonds/struct_conn.d.ts +1 -0
  138. package/lib/mol-model-formats/structure/property/bonds/struct_conn.js +10 -1
  139. package/lib/mol-plugin/version.js +2 -2
  140. package/lib/mol-plugin-state/builder/structure/representation-preset.js +3 -2
  141. package/lib/mol-plugin-state/transforms/representation.d.ts +1 -1
  142. package/lib/mol-plugin-ui/controls/icons.d.ts +3 -1
  143. package/lib/mol-plugin-ui/controls/icons.js +6 -2
  144. package/lib/mol-plugin-ui/plugin.d.ts +1 -0
  145. package/lib/mol-plugin-ui/plugin.js +3 -3
  146. package/lib/mol-repr/shape/loci/label.d.ts +1 -1
  147. package/lib/mol-repr/shape/loci/label.js +1 -1
  148. package/lib/mol-repr/structure/registry.d.ts +9 -2
  149. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +1 -1
  150. package/lib/mol-repr/structure/representation/ball-and-stick.js +11 -2
  151. package/lib/mol-repr/structure/representation/cartoon.d.ts +29 -7
  152. package/lib/mol-repr/structure/representation/cartoon.js +10 -3
  153. package/lib/mol-repr/structure/representation/line.d.ts +1 -1
  154. package/lib/mol-repr/structure/representation/line.js +11 -2
  155. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +83 -0
  156. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.js +298 -0
  157. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +87 -0
  158. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.js +258 -0
  159. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +51 -0
  160. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.js +169 -0
  161. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +4 -1
  162. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.js +32 -45
  163. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +4 -1
  164. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.js +50 -89
  165. package/lib/mol-repr/structure/visual/util/nucleotide.d.ts +104 -1
  166. package/lib/mol-repr/structure/visual/util/nucleotide.js +105 -1
  167. package/lib/servers/model/version.d.ts +2 -2
  168. package/lib/servers/model/version.js +2 -2
  169. package/package.json +23 -18

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