molstar 3.35.0 → 3.36.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/viewport.js +1 -1
- package/lib/apps/viewer/app.d.ts +1 -1
- package/lib/apps/viewer/app.js +2 -0
- package/lib/cli/chem-comp-dict/util.js +2 -2
- package/lib/commonjs/apps/docking-viewer/viewport.js +1 -1
- package/lib/commonjs/apps/viewer/app.d.ts +1 -1
- package/lib/commonjs/apps/viewer/app.js +2 -0
- package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
- package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +2 -2
- package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -1
- package/lib/commonjs/extensions/anvil/prop.js +1 -2
- package/lib/commonjs/extensions/cellpack/data.js +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/types.js +1 -1
- package/lib/commonjs/extensions/dnatco/ntc-tube/types.js +1 -1
- package/lib/commonjs/extensions/dnatco/property.js +1 -1
- package/lib/commonjs/extensions/dnatco/types.js +1 -1
- package/lib/commonjs/extensions/dnatco/util.js +1 -1
- package/lib/commonjs/extensions/geo-export/ui.js +2 -2
- package/lib/commonjs/extensions/meshes/mesh-extension.js +1 -1
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.js +1 -2
- package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.js +1 -2
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +1 -2
- package/lib/commonjs/extensions/model-export/ui.js +1 -1
- package/lib/commonjs/extensions/mp4-export/ui.js +2 -2
- package/lib/commonjs/extensions/pdbe/preferred-assembly.js +1 -1
- package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +1 -1
- package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +2269 -2751
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -2
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +1 -1
- package/lib/commonjs/extensions/volumes-and-segmentations/ui.js +13 -13
- package/lib/commonjs/extensions/wwpdb/ccd/behavior.d.ts +7 -0
- package/lib/commonjs/extensions/wwpdb/ccd/behavior.js +38 -0
- package/lib/commonjs/extensions/wwpdb/ccd/representation.d.ts +62 -0
- package/lib/commonjs/extensions/wwpdb/ccd/representation.js +182 -0
- package/lib/commonjs/extensions/zenodo/ui.js +3 -3
- package/lib/commonjs/mol-canvas3d/camera/stereo.js +1 -2
- package/lib/commonjs/mol-canvas3d/camera/transition.js +1 -2
- package/lib/commonjs/mol-canvas3d/camera/util.js +1 -2
- package/lib/commonjs/mol-canvas3d/camera.js +1 -2
- package/lib/commonjs/mol-canvas3d/canvas3d.js +2 -4
- package/lib/commonjs/mol-canvas3d/controls/object.js +1 -1
- package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +1 -1
- package/lib/commonjs/mol-data/db/column.js +1 -2
- package/lib/commonjs/mol-data/db/database.js +1 -2
- package/lib/commonjs/mol-data/db/table.js +1 -2
- package/lib/commonjs/mol-data/generic/unique-array.js +1 -2
- package/lib/commonjs/mol-data/int/interval.js +1 -2
- package/lib/commonjs/mol-data/int/map.js +1 -2
- package/lib/commonjs/mol-data/int/ordered-set.js +1 -2
- package/lib/commonjs/mol-data/int/segmentation.js +1 -2
- package/lib/commonjs/mol-data/int/sorted-array.js +1 -2
- package/lib/commonjs/mol-data/int/sorted-ranges.js +1 -2
- package/lib/commonjs/mol-data/int/tuple.js +1 -2
- package/lib/commonjs/mol-data/iterator.js +1 -2
- package/lib/commonjs/mol-data/util/chunked-array.js +1 -2
- package/lib/commonjs/mol-geo/geometry/base.js +2 -2
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders-builder.js +1 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +1 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +1 -1
- package/lib/commonjs/mol-geo/geometry/geometry.js +1 -1
- package/lib/commonjs/mol-geo/geometry/image/image.js +1 -2
- package/lib/commonjs/mol-geo/geometry/lines/lines-builder.js +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh-builder.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
- package/lib/commonjs/mol-geo/geometry/picking.js +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points-builder.js +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres-builder.js +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text-builder.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +1 -1
- package/lib/commonjs/mol-gl/object3d.js +1 -1
- package/lib/commonjs/mol-gl/renderer.js +3 -4
- package/lib/commonjs/mol-gl/scene.js +1 -2
- package/lib/commonjs/mol-gl/shader/ssao.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/ssao.frag.js +1 -1
- package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +2 -2
- package/lib/commonjs/mol-io/common/binary-cif/encoding.js +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js +1 -1
- package/lib/commonjs/mol-io/common/simple-buffer.js +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/data-model.js +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +2 -3
- package/lib/commonjs/mol-io/reader/result.js +1 -2
- package/lib/commonjs/mol-io/utils/short-string-pool.js +1 -2
- package/lib/commonjs/mol-io/writer/cif/encoder.js +3 -3
- package/lib/commonjs/mol-io/writer/cif.js +1 -1
- package/lib/commonjs/mol-io/writer/mol.js +1 -1
- package/lib/commonjs/mol-io/writer/mol2.js +1 -1
- package/lib/commonjs/mol-io/writer/sdf.js +1 -1
- package/lib/commonjs/mol-math/geometry/centroid-helper.js +1 -2
- package/lib/commonjs/mol-math/geometry/lookup3d/common.js +1 -1
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +1 -2
- package/lib/commonjs/mol-math/geometry/primitives/box3d.js +1 -2
- package/lib/commonjs/mol-math/geometry/primitives/frustum3d.js +1 -2
- package/lib/commonjs/mol-math/geometry/primitives/plane3d.js +1 -2
- package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +1 -2
- package/lib/commonjs/mol-math/geometry/spacegroup/cell.js +1 -2
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js +2 -4
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +1 -2
- package/lib/commonjs/mol-math/graph/int-adjacency-graph.d.ts +12 -7
- package/lib/commonjs/mol-math/graph/int-adjacency-graph.js +13 -7
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/mat3.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/mat4.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/minimize-rmsd.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/matrix/evd.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/matrix/matrix.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/matrix/principal-axes.js +1 -2
- package/lib/commonjs/mol-math/linear-algebra/tensor.js +1 -1
- package/lib/commonjs/mol-model/custom-property.js +1 -2
- package/lib/commonjs/mol-model/loci.js +1 -2
- package/lib/commonjs/mol-model/sequence/alignment/sequence.js +1 -2
- package/lib/commonjs/mol-model/sequence/sequence.js +1 -2
- package/lib/commonjs/mol-model/shape/shape.js +2 -2
- package/lib/commonjs/mol-model/structure/coordinates/coordinates.js +1 -2
- package/lib/commonjs/mol-model/structure/export/mmcif.js +1 -1
- package/lib/commonjs/mol-model/structure/model/model.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/coarse/hierarchy.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/custom/indexed.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/global-transform.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/sequence.js +1 -2
- package/lib/commonjs/mol-model/structure/model/properties/symmetry.js +2 -4
- package/lib/commonjs/mol-model/structure/model/types/ions.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types.js +3 -3
- package/lib/commonjs/mol-model/structure/query/predicates.js +1 -2
- package/lib/commonjs/mol-model/structure/query/query.js +1 -2
- package/lib/commonjs/mol-model/structure/query/selection.js +1 -2
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +2 -2
- package/lib/commonjs/mol-model/structure/structure/element/bundle.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/location.js +1 -2
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/stats.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/structure.js +11 -17
- package/lib/commonjs/mol-model/structure/structure/symmetry.js +1 -2
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +2 -4
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +9 -5
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +1 -2
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -4
- package/lib/commonjs/mol-model/structure/structure/unit.js +1 -2
- package/lib/commonjs/mol-model/structure/structure/util/lookup3d.js +1 -1
- package/lib/commonjs/mol-model/structure/topology/topology.js +1 -2
- package/lib/commonjs/mol-model/volume/grid.js +1 -2
- package/lib/commonjs/mol-model/volume/volume.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/cif-core.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/common/property.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/gro.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/mmcif.d.ts +20 -1
- package/lib/commonjs/mol-model-formats/structure/mmcif.js +137 -4
- package/lib/commonjs/mol-model-formats/structure/mol.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/mol2.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/pdb.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/prmtop.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/property/anisotropic.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/property/atoms/chem_comp.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +3 -4
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/partial-charge.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/property/symmetry.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/psf.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/sdf.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/top.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/xyz.js +1 -2
- package/lib/commonjs/mol-model-formats/volume/ccp4.js +1 -2
- package/lib/commonjs/mol-model-formats/volume/cube.js +1 -2
- package/lib/commonjs/mol-model-formats/volume/density-server.js +1 -2
- package/lib/commonjs/mol-model-formats/volume/dsn6.js +1 -2
- package/lib/commonjs/mol-model-formats/volume/dx.js +1 -2
- package/lib/commonjs/mol-model-formats/volume/property.js +2 -4
- package/lib/commonjs/mol-model-formats/volume/segmentation.js +1 -2
- package/lib/commonjs/mol-model-props/common/custom-element-property.js +1 -2
- package/lib/commonjs/mol-model-props/common/custom-model-property.js +1 -2
- package/lib/commonjs/mol-model-props/common/custom-property.js +1 -2
- package/lib/commonjs/mol-model-props/common/custom-structure-property.js +1 -2
- package/lib/commonjs/mol-model-props/common/wrapper.js +1 -2
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +1 -2
- package/lib/commonjs/mol-model-props/computed/chemistry/geometry.js +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/common.js +5 -6
- package/lib/commonjs/mol-model-props/computed/interactions/contacts-builder.js +2 -4
- package/lib/commonjs/mol-model-props/computed/interactions/features.js +2 -4
- package/lib/commonjs/mol-model-props/computed/interactions/interactions.js +1 -2
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/common.js +1 -2
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/format.js +1 -2
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/property.js +1 -2
- package/lib/commonjs/mol-model-props/sequence/sifts-mapping.js +1 -2
- package/lib/commonjs/mol-plugin/behavior/behavior.js +1 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.js +1 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.js +1 -1
- package/lib/commonjs/mol-plugin/commands.d.ts +4 -0
- package/lib/commonjs/mol-plugin/context.d.ts +1 -0
- package/lib/commonjs/mol-plugin/context.js +2 -0
- package/lib/commonjs/mol-plugin/spec.js +1 -2
- package/lib/commonjs/mol-plugin/state.d.ts +6 -0
- package/lib/commonjs/mol-plugin/state.js +7 -2
- package/lib/commonjs/mol-plugin/util/task-manager.js +1 -2
- package/lib/commonjs/mol-plugin-state/animation/model.js +1 -2
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +1 -1
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.js +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-query.js +1 -2
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +1 -1
- package/lib/commonjs/mol-plugin-state/manager/interactivity.js +1 -2
- package/lib/commonjs/mol-plugin-state/manager/loci-label.js +2 -0
- package/lib/commonjs/mol-plugin-state/manager/snapshots.js +1 -2
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +1 -2
- package/lib/commonjs/mol-plugin-state/manager/structure/hierarchy.js +1 -2
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +9 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +23 -1
- package/lib/commonjs/mol-plugin-state/manager/volume/hierarchy.js +1 -2
- package/lib/commonjs/mol-plugin-state/objects.js +2 -2
- package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/model.js +24 -16
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +1 -1
- package/lib/commonjs/mol-plugin-ui/base.js +1 -1
- package/lib/commonjs/mol-plugin-ui/controls/action-menu.js +7 -8
- package/lib/commonjs/mol-plugin-ui/controls/color.js +5 -5
- package/lib/commonjs/mol-plugin-ui/controls/common.js +9 -9
- package/lib/commonjs/mol-plugin-ui/controls/icons.js +68 -69
- package/lib/commonjs/mol-plugin-ui/controls/legend.js +4 -4
- package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.js +1 -1
- package/lib/commonjs/mol-plugin-ui/controls/parameters.js +35 -35
- package/lib/commonjs/mol-plugin-ui/controls/screenshot.js +1 -1
- package/lib/commonjs/mol-plugin-ui/controls/slider.js +3 -3
- package/lib/commonjs/mol-plugin-ui/controls.js +6 -6
- package/lib/commonjs/mol-plugin-ui/custom/volume.js +1 -1
- package/lib/commonjs/mol-plugin-ui/left-panel.js +1 -1
- package/lib/commonjs/mol-plugin-ui/plugin.js +9 -9
- package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +3 -3
- package/lib/commonjs/mol-plugin-ui/sequence.js +6 -6
- package/lib/commonjs/mol-plugin-ui/state/actions.js +1 -1
- package/lib/commonjs/mol-plugin-ui/state/animation.js +1 -1
- package/lib/commonjs/mol-plugin-ui/state/common.js +5 -6
- package/lib/commonjs/mol-plugin-ui/state/snapshots.js +9 -9
- package/lib/commonjs/mol-plugin-ui/state/tree.js +8 -8
- package/lib/commonjs/mol-plugin-ui/structure/components.js +6 -6
- package/lib/commonjs/mol-plugin-ui/structure/focus.js +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/generic.js +2 -2
- package/lib/commonjs/mol-plugin-ui/structure/measurements.js +7 -7
- package/lib/commonjs/mol-plugin-ui/structure/quick-styles.js +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/selection.js +6 -6
- package/lib/commonjs/mol-plugin-ui/structure/source.js +2 -2
- package/lib/commonjs/mol-plugin-ui/structure/superposition.js +7 -7
- package/lib/commonjs/mol-plugin-ui/structure/volume.js +3 -3
- package/lib/commonjs/mol-plugin-ui/task.js +4 -4
- package/lib/commonjs/mol-plugin-ui/toast.js +3 -2
- package/lib/commonjs/mol-plugin-ui/viewport/canvas.js +2 -2
- package/lib/commonjs/mol-plugin-ui/viewport/help.js +6 -6
- package/lib/commonjs/mol-plugin-ui/viewport/screenshot.js +2 -2
- package/lib/commonjs/mol-plugin-ui/viewport.js +1 -1
- package/lib/commonjs/mol-repr/representation.js +2 -3
- package/lib/commonjs/mol-repr/structure/registry.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/registry.js +1 -2
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/units-representation.js +6 -6
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +10 -7
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/element.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/nucleotide.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +9 -5
- package/lib/commonjs/mol-repr/util.js +1 -1
- package/lib/commonjs/mol-repr/visual.js +1 -2
- package/lib/commonjs/mol-repr/volume/registry.js +1 -2
- package/lib/commonjs/mol-repr/volume/representation.js +5 -5
- package/lib/commonjs/mol-script/language/builder.js +1 -1
- package/lib/commonjs/mol-script/language/expression.js +1 -2
- package/lib/commonjs/mol-script/language/symbol-table/core.js +1 -1
- package/lib/commonjs/mol-script/language/symbol-table/structure-query.js +1 -1
- package/lib/commonjs/mol-script/language/symbol.js +1 -1
- package/lib/commonjs/mol-script/language/type.js +1 -2
- package/lib/commonjs/mol-script/runtime/query/base.js +4 -4
- package/lib/commonjs/mol-script/script.js +1 -2
- package/lib/commonjs/mol-script/transpilers/helper.d.ts +1 -1
- package/lib/commonjs/mol-state/action.js +1 -2
- package/lib/commonjs/mol-state/object.js +3 -5
- package/lib/commonjs/mol-state/state/builder.js +1 -2
- package/lib/commonjs/mol-state/state/selection.js +1 -2
- package/lib/commonjs/mol-state/state.js +1 -2
- package/lib/commonjs/mol-state/transform.js +1 -2
- package/lib/commonjs/mol-state/transformer.js +1 -2
- package/lib/commonjs/mol-state/tree/immutable.js +1 -2
- package/lib/commonjs/mol-state/tree/spine.js +1 -2
- package/lib/commonjs/mol-task/execution/progress.js +1 -2
- package/lib/commonjs/mol-task/execution/runtime-context.js +1 -2
- package/lib/commonjs/mol-task/task.js +1 -2
- package/lib/commonjs/mol-task/util/user-timing.js +1 -1
- package/lib/commonjs/mol-theme/clipping.js +1 -2
- package/lib/commonjs/mol-theme/color/cartoon.d.ts +562 -0
- package/lib/commonjs/mol-theme/color/cartoon.js +100 -0
- package/lib/commonjs/mol-theme/color/element-symbol.d.ts +1 -1
- package/lib/commonjs/mol-theme/color/element-symbol.js +15 -10
- package/lib/commonjs/mol-theme/color/illustrative.d.ts +5 -1
- package/lib/commonjs/mol-theme/color/illustrative.js +14 -9
- package/lib/commonjs/mol-theme/color/uniform.d.ts +5 -1
- package/lib/commonjs/mol-theme/color/uniform.js +5 -1
- package/lib/commonjs/mol-theme/color.d.ts +280 -1
- package/lib/commonjs/mol-theme/color.js +4 -3
- package/lib/commonjs/mol-theme/overpaint.js +1 -2
- package/lib/commonjs/mol-theme/size.js +1 -2
- package/lib/commonjs/mol-theme/substance.js +1 -2
- package/lib/commonjs/mol-theme/theme.js +1 -2
- package/lib/commonjs/mol-theme/transparency.js +1 -2
- package/lib/commonjs/mol-util/assets.js +1 -2
- package/lib/commonjs/mol-util/binding.js +1 -2
- package/lib/commonjs/mol-util/bit-flags.js +1 -2
- package/lib/commonjs/mol-util/clip.js +1 -1
- package/lib/commonjs/mol-util/color/color.js +1 -1
- package/lib/commonjs/mol-util/color/scale.js +1 -1
- package/lib/commonjs/mol-util/color/spaces/hcl.js +1 -2
- package/lib/commonjs/mol-util/color/spaces/lab.js +1 -2
- package/lib/commonjs/mol-util/console-logger.js +1 -1
- package/lib/commonjs/mol-util/data-source.js +1 -1
- package/lib/commonjs/mol-util/image.js +1 -2
- package/lib/commonjs/mol-util/input/input-observer.js +3 -4
- package/lib/commonjs/mol-util/log-entry.js +1 -2
- package/lib/commonjs/mol-util/lru-cache.js +1 -2
- package/lib/commonjs/mol-util/marker-action.js +2 -2
- package/lib/commonjs/mol-util/mask.js +1 -2
- package/lib/commonjs/mol-util/material.js +1 -1
- package/lib/commonjs/mol-util/monadic-parser.js +1 -2
- package/lib/commonjs/mol-util/param-definition.js +1 -1
- package/lib/commonjs/mol-util/rx-event-helper.js +1 -2
- package/lib/commonjs/mol-util/set.js +1 -1
- package/lib/commonjs/mol-util/string-builder.js +1 -2
- package/lib/commonjs/mol-util/uuid.js +1 -2
- package/lib/commonjs/mol-util/value-cell.js +3 -6
- package/lib/commonjs/servers/model/server/api.js +1 -1
- package/lib/commonjs/servers/model/server/structure-wrapper.js +1 -1
- package/lib/examples/alpha-orbitals/controls.js +1 -2
- package/lib/examples/proteopedia-wrapper/ui/controls.js +1 -2
- package/lib/extensions/geo-export/ui.js +3 -3
- package/lib/extensions/model-export/ui.js +2 -2
- package/lib/extensions/mp4-export/ui.js +3 -3
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
- package/lib/extensions/rcsb/assembly-symmetry/ui.js +1 -1
- package/lib/extensions/rcsb/graphql/types.d.ts +2269 -2751
- package/lib/extensions/volumes-and-segmentations/ui.js +13 -13
- package/lib/extensions/wwpdb/ccd/behavior.d.ts +7 -0
- package/lib/extensions/wwpdb/ccd/behavior.js +35 -0
- package/lib/extensions/wwpdb/ccd/representation.d.ts +62 -0
- package/lib/extensions/wwpdb/ccd/representation.js +179 -0
- package/lib/extensions/zenodo/ui.js +4 -4
- package/lib/mol-geo/geometry/base.js +1 -1
- package/lib/mol-gl/shader/ssao.frag.d.ts +1 -1
- package/lib/mol-gl/shader/ssao.frag.js +1 -1
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +3 -3
- package/lib/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/mol-math/graph/int-adjacency-graph.d.ts +12 -7
- package/lib/mol-math/graph/int-adjacency-graph.js +12 -6
- package/lib/mol-model/structure/model/types/ions.js +1 -1
- package/lib/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/mol-model/structure/structure/structure.js +11 -16
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +9 -5
- package/lib/mol-model-formats/structure/mmcif.d.ts +20 -1
- package/lib/mol-model-formats/structure/mmcif.js +137 -3
- package/lib/mol-model-formats/structure/property/bonds/index-pair.d.ts +1 -1
- package/lib/mol-model-formats/structure/property/bonds/index-pair.js +2 -3
- package/lib/mol-plugin/commands.d.ts +4 -0
- package/lib/mol-plugin/context.d.ts +1 -0
- package/lib/mol-plugin/context.js +2 -0
- package/lib/mol-plugin/state.d.ts +6 -0
- package/lib/mol-plugin/state.js +6 -0
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
- package/lib/mol-plugin-state/manager/loci-label.js +2 -0
- package/lib/mol-plugin-state/manager/structure/selection.d.ts +9 -1
- package/lib/mol-plugin-state/manager/structure/selection.js +24 -2
- package/lib/mol-plugin-state/transforms/model.d.ts +1 -1
- package/lib/mol-plugin-state/transforms/model.js +25 -17
- package/lib/mol-plugin-ui/base.js +2 -2
- package/lib/mol-plugin-ui/controls/action-menu.js +6 -6
- package/lib/mol-plugin-ui/controls/color.js +6 -6
- package/lib/mol-plugin-ui/controls/common.js +10 -10
- package/lib/mol-plugin-ui/controls/icons.js +68 -69
- package/lib/mol-plugin-ui/controls/legend.js +5 -5
- package/lib/mol-plugin-ui/controls/line-graph/line-graph-component.js +2 -2
- package/lib/mol-plugin-ui/controls/parameters.js +35 -35
- package/lib/mol-plugin-ui/controls/screenshot.js +1 -1
- package/lib/mol-plugin-ui/controls/slider.js +3 -3
- package/lib/mol-plugin-ui/controls.js +7 -7
- package/lib/mol-plugin-ui/custom/volume.js +1 -1
- package/lib/mol-plugin-ui/left-panel.js +1 -1
- package/lib/mol-plugin-ui/plugin.js +10 -10
- package/lib/mol-plugin-ui/sequence/sequence.js +3 -3
- package/lib/mol-plugin-ui/sequence.js +6 -6
- package/lib/mol-plugin-ui/state/actions.js +2 -2
- package/lib/mol-plugin-ui/state/animation.js +2 -2
- package/lib/mol-plugin-ui/state/common.js +4 -4
- package/lib/mol-plugin-ui/state/snapshots.js +9 -9
- package/lib/mol-plugin-ui/state/tree.js +9 -9
- package/lib/mol-plugin-ui/structure/components.js +7 -7
- package/lib/mol-plugin-ui/structure/focus.js +2 -2
- package/lib/mol-plugin-ui/structure/generic.js +3 -3
- package/lib/mol-plugin-ui/structure/measurements.js +8 -8
- package/lib/mol-plugin-ui/structure/quick-styles.js +1 -1
- package/lib/mol-plugin-ui/structure/selection.js +7 -7
- package/lib/mol-plugin-ui/structure/source.js +3 -3
- package/lib/mol-plugin-ui/structure/superposition.js +8 -8
- package/lib/mol-plugin-ui/structure/volume.js +3 -3
- package/lib/mol-plugin-ui/task.js +5 -5
- package/lib/mol-plugin-ui/toast.js +4 -3
- package/lib/mol-plugin-ui/viewport/canvas.js +3 -3
- package/lib/mol-plugin-ui/viewport/help.js +7 -7
- package/lib/mol-plugin-ui/viewport/screenshot.js +3 -3
- package/lib/mol-plugin-ui/viewport.js +1 -1
- package/lib/mol-repr/structure/registry.d.ts +1 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/mol-repr/structure/units-representation.js +6 -6
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +4 -1
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +10 -7
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.js +2 -2
- package/lib/mol-repr/structure/visual/util/polymer.d.ts +2 -2
- package/lib/mol-repr/structure/visual/util/polymer.js +7 -3
- package/lib/mol-repr/volume/representation.js +5 -5
- package/lib/mol-script/transpilers/helper.d.ts +1 -1
- package/lib/mol-theme/color/cartoon.d.ts +562 -0
- package/lib/mol-theme/color/cartoon.js +95 -0
- package/lib/mol-theme/color/element-symbol.d.ts +1 -1
- package/lib/mol-theme/color/element-symbol.js +15 -10
- package/lib/mol-theme/color/illustrative.d.ts +5 -1
- package/lib/mol-theme/color/illustrative.js +14 -9
- package/lib/mol-theme/color/uniform.d.ts +5 -1
- package/lib/mol-theme/color/uniform.js +5 -1
- package/lib/mol-theme/color.d.ts +280 -1
- package/lib/mol-theme/color.js +3 -1
- package/package.json +26 -26
There are too many changes on this page to be displayed.
The amount of changes on this page would crash your brower.
You can still verify the content by downloading the package file manually.