molstar 3.1.0 → 3.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (94) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +194 -194
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/viewer/embedded.html +43 -43
  8. package/lib/apps/viewer/index.html +106 -106
  9. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
  10. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  11. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  12. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -0
  13. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +22 -0
  14. package/lib/commonjs/mol-model/structure/export/categories/atom_site.js +68 -1
  15. package/lib/commonjs/mol-model/structure/structure/util/superposition-sifts-mapping.d.ts +21 -0
  16. package/lib/commonjs/mol-model/structure/structure/util/{superposition-db-mapping.js → superposition-sifts-mapping.js} +40 -20
  17. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +5 -0
  18. package/lib/commonjs/mol-model-formats/structure/common/property.d.ts +5 -2
  19. package/lib/commonjs/mol-model-formats/structure/common/property.js +20 -8
  20. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +1 -0
  21. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +2 -1
  22. package/lib/commonjs/mol-model-props/sequence/{best-database-mapping.d.ts → sifts-mapping.d.ts} +7 -5
  23. package/lib/commonjs/mol-model-props/sequence/{best-database-mapping.js → sifts-mapping.js} +29 -26
  24. package/lib/{mol-model-props/sequence/themes/best-database-mapping.d.ts → commonjs/mol-model-props/sequence/themes/sifts-mapping.d.ts} +5 -5
  25. package/lib/commonjs/mol-model-props/sequence/themes/{best-database-mapping.js → sifts-mapping.js} +22 -22
  26. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/sequence/{best-database-mapping.d.ts → sifts-mapping.d.ts} +1 -1
  27. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/sequence/{best-database-mapping.js → sifts-mapping.js} +11 -11
  28. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props.d.ts +1 -1
  29. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props.js +2 -2
  30. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  31. package/lib/commonjs/mol-plugin-ui/structure/superposition.d.ts +4 -1
  32. package/lib/commonjs/mol-plugin-ui/structure/superposition.js +66 -30
  33. package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
  34. package/lib/examples/alpha-orbitals/index.html +61 -61
  35. package/lib/examples/basic-wrapper/index.html +137 -137
  36. package/lib/examples/lighting/index.html +88 -88
  37. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  38. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
  39. package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
  40. package/lib/mol-geo/geometry/points/points.d.ts +1 -1
  41. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +22 -0
  42. package/lib/mol-io/reader/cif/schema/mmcif.js +22 -0
  43. package/lib/mol-model/structure/export/categories/atom_site.js +68 -1
  44. package/lib/mol-model/structure/structure/util/superposition-sifts-mapping.d.ts +21 -0
  45. package/lib/mol-model/structure/structure/util/{superposition-db-mapping.js → superposition-sifts-mapping.js} +38 -18
  46. package/lib/mol-model-formats/structure/basic/schema.d.ts +5 -0
  47. package/lib/mol-model-formats/structure/common/property.d.ts +5 -2
  48. package/lib/mol-model-formats/structure/common/property.js +20 -8
  49. package/lib/mol-model-formats/structure/property/bonds/index-pair.d.ts +1 -0
  50. package/lib/mol-model-formats/structure/property/bonds/index-pair.js +2 -1
  51. package/lib/mol-model-props/sequence/{best-database-mapping.d.ts → sifts-mapping.d.ts} +7 -5
  52. package/lib/mol-model-props/sequence/{best-database-mapping.js → sifts-mapping.js} +28 -25
  53. package/lib/{commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts → mol-model-props/sequence/themes/sifts-mapping.d.ts} +5 -5
  54. package/lib/mol-model-props/sequence/themes/{best-database-mapping.js → sifts-mapping.js} +19 -19
  55. package/lib/mol-plugin/behavior/dynamic/custom-props/sequence/{best-database-mapping.d.ts → sifts-mapping.d.ts} +1 -1
  56. package/lib/mol-plugin/behavior/dynamic/custom-props/sequence/{best-database-mapping.js → sifts-mapping.js} +8 -8
  57. package/lib/mol-plugin/behavior/dynamic/custom-props.d.ts +1 -1
  58. package/lib/mol-plugin/behavior/dynamic/custom-props.js +1 -1
  59. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  60. package/lib/mol-plugin/version.js +2 -2
  61. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  62. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  63. package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
  64. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  65. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  66. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  67. package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
  68. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  69. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  70. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  71. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  72. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  73. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +127 -127
  74. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  75. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  76. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  77. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  78. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  79. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  80. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  81. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  82. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  83. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  84. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  85. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  86. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  87. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  88. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  89. package/lib/mol-plugin-ui/structure/superposition.d.ts +4 -1
  90. package/lib/mol-plugin-ui/structure/superposition.js +66 -30
  91. package/lib/mol-script/language/builder.d.ts +1 -0
  92. package/package.json +160 -160
  93. package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.d.ts +0 -13
  94. package/lib/mol-model/structure/structure/util/superposition-db-mapping.d.ts +0 -13

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