npm - molstar - Versions diffs - 3.0.1 → 3.0.2 - Mend

molstar 3.0.1 → 3.0.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1754) hide show

package/lib/examples/proteopedia-wrapper/index.html CHANGED Viewed

@@ -1,237 +1,237 @@
-<!DOCTYPE html>
-<html lang="en">
-    <head>
-        <meta charset="utf-8" />
-        <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
-        <title>Mol* Proteopedia Wrapper</title>
-        <style>
-            * {
-                margin: 0;
-                padding: 0;
-                box-sizing: border-box;
-            }
-            #app {
-                position: absolute;
-                left: 160px;
-                top: 100px;
-                width: 600px;
-                height: 600px;
-                border: 1px solid #ccc;
-            }
-            #controls {
-                position: absolute;
-                width: 130px;
-                top: 10px;
-                left: 10px;
-            }
-            #controls > button {
-                display: block;
-                width: 100%;
-                text-align: left;
-            }
-            #controls > hr {
-                margin: 5px 0;
-            }
-            #controls > input, #controls > select {
-                width: 100%;
-                display: block;
-            }
-            #volume-streaming-wrapper {
-                position: absolute;
-                top: 100px;
-                left: 780px;
-                width: 300px;
-            }
-        </style>
-        <link rel="stylesheet" type="text/css" href="molstar.css" />
-        <script type="text/javascript" src="./index.js"></script>
-    </head>
-    <body>
-        <div id='controls'>
-            <h3>Source</h3>
-            <input type='text' id='url' placeholder='url' style='width: 400px' />
-            <input type='text' id='assemblyId' placeholder='assembly id' />
-            <select id='format'>
-                <option value='cif' selected>CIF</option>
-                <option value='pdb'>PDB</option>
-            </select>
-            <input type='checkbox' id='isBinary' style="display: inline-block; width: auto" /> <label for="isBinary"> Binary</label><br />
-        </div>
-        <div id="app"></div>
-        <div id="volume-streaming-wrapper"></div>
-        <script>
-            // it might be a good idea to define these colors in a separate script file
-            var CustomColors = [0x00ff00, 0x0000ff];
-            // create an instance of the plugin
-            var PluginWrapper = new MolStarProteopediaWrapper();
-            console.log('Wrapper version', MolStarProteopediaWrapper.VERSION_MAJOR, MolStarProteopediaWrapper.VERSION_MINOR);
-            function $(id) { return document.getElementById(id); }
-            var pdbId = '1cbs', assemblyId= 'preferred', isBinary = true;
-            var url = 'https://www.ebi.ac.uk/pdbe/entry-files/download/' + pdbId + '.bcif'
-            var format = 'cif';
-            $('url').value = url;
-            $('url').onchange = function (e) { url = e.target.value; }
-            $('assemblyId').value = assemblyId;
-            $('assemblyId').onchange = function (e) { assemblyId = e.target.value; }
-            $('format').value = format;
-            $('format').onchange = function (e) { format = e.target.value; }
-            $('isBinary').checked = isBinary;
-            $('isBinary').onchange = function (e) { isBinary = !!e.target.checked; };
-            function loadAndSnapshot(params) {
-                PluginWrapper.load(params).then(() => {
-                    setTimeout(() => snapshot = PluginWrapper.plugin.state.getSnapshot({ canvas3d: false /* do not save spinning state */ }), 500);
-                });
-            }
-            var representationStyle = {
-                // sequence: { coloring: 'proteopedia-custom' }, // or just { }
-                hetGroups: { kind: 'ball-and-stick' }, // or 'spacefill
-                water: { hide: true },
-                snfg3d: { hide: false }
-            };
-            PluginWrapper.init('app' /** or document.getElementById('app') */, {
-                customColorList: CustomColors
-            }).then(() => {
-                PluginWrapper.setBackground(0xffffff);
-                loadAndSnapshot({ url: url, format: format, isBinary: isBinary, assemblyId: assemblyId, representationStyle: representationStyle });
-                PluginWrapper.toggleSpin();
-            });
-            PluginWrapper.events.modelInfo.subscribe(function (info) {
-                console.log('Model Info', info);
-                listHetGroups(info);
-            });
-            addControl('Load Asym Unit', () => loadAndSnapshot({ url: url, format: format, isBinary }));
-            addControl('Load Assembly', () => loadAndSnapshot({ url: url, format: format, isBinary, assemblyId: assemblyId }));
-            addSeparator();
-            addHeader('Representation');
-            addControl('Custom Chain Colors', () => PluginWrapper.updateStyle({ sequence: { coloring: 'proteopedia-custom' } }, true));
-            addControl('Default Chain Colors', () => PluginWrapper.updateStyle({ sequence: { } }, true));
-            addControl('HET Spacefill', () => PluginWrapper.updateStyle({ hetGroups: { kind: 'spacefill' } }, true));
-            addControl('HET Ball-and-stick', () => PluginWrapper.updateStyle({ hetGroups: { kind: 'ball-and-stick' } }, true));
-            addControl('Hide 3DSNFG', () => PluginWrapper.updateStyle({ snfg3d: { hide: true } }, true));
-            addControl('Show 3DSNFG', () => PluginWrapper.updateStyle({ snfg3d: { hide: false } }, true));
-            addControl('Hide Water', () => PluginWrapper.updateStyle({ water: { hide: true } }, true));
-            addControl('Show Water', () => PluginWrapper.updateStyle({ water: { hide: false } }, true));
-            addSeparator();
-            addHeader('Camera');
-            addControl('Reset Position', () => PluginWrapper.camera.resetPosition());
-            addControl('Toggle Spin', () => PluginWrapper.camera.toggleSpin());
-            // Same as "wheel icon" and Viewport options
-            // addControl('Clip', () => PluginWrapper.viewport.setSettings({ clip: [33, 66] }));
-            // addControl('Reset Clip', () => PluginWrapper.viewport.setSettings({ clip: [1, 100] }));
-            addSeparator();
-            addHeader('Animation');
-            // adjust this number to make the animation faster or slower
-            // requires to "restart" the animation if changed
-            PluginWrapper.animate.modelIndex.targetFps = 30;
-            addControl('Play To End', () => PluginWrapper.animate.modelIndex.onceForward());
-            addControl('Play To Start', () => PluginWrapper.animate.modelIndex.onceBackward());
-            addControl('Play Palindrome', () => PluginWrapper.animate.modelIndex.palindrome());
-            addControl('Play Loop', () => PluginWrapper.animate.modelIndex.loop());
-            addControl('Stop', () => PluginWrapper.animate.modelIndex.stop());
-            addSeparator();
-            addHeader('Misc');
-            addControl('Apply Evo Cons Style', () => PluginWrapper.coloring.evolutionaryConservation());
-            addControl('Apply Evo Cons Colors', () => PluginWrapper.coloring.evolutionaryConservation({ sequence: true, het: false, keepStyle: true }));
-            addControl('Default Visuals', () => PluginWrapper.updateStyle());
-            addSeparator();
-            addHeader('HET Groups');
-            addControl('Reset', () => PluginWrapper.hetGroups.reset());
-            addHetGroupsContainer();
-            addSeparator();
-            addHeader('Exp. Data');
-            addControl('Init', () => PluginWrapper.experimentalData.init($('volume-streaming-wrapper')));
-            addControl('Remove', () => PluginWrapper.experimentalData.remove());
-            addSeparator();
-            addHeader('State');
-            var snapshot;
-            addControl('Set Snapshot', () => {
-                // const options = { data: true, behavior: false, animation: false, interactivity: false, canvas3d: false, camera: false, cameraTransition: false };
-                snapshot = PluginWrapper.plugin.state.getSnapshot(/** options */);
-                // console.log(JSON.stringify(snapshot, null, 2));
-            });
-            addControl('Restore Snapshot', () => {
-                if (!snapshot) return;
-                PluginWrapper.snapshot.set(snapshot);
-            });
-            addControl('Download State', () => {
-                PluginWrapper.snapshot.download('molj');
-            });
-            addControl('Download Session', () => {
-                PluginWrapper.snapshot.download('molx');
-            });
-            ////////////////////////////////////////////////////////
-            function addHetGroupsContainer() {
-                var div = document.createElement('div');
-                div.id = 'het-groups';
-                $('controls').appendChild(div);
-            }
-            function addControl(label, action) {
-                var btn = document.createElement('button');
-                btn.onclick = action;
-                btn.innerText = label;
-                $('controls').appendChild(btn);
-            }
-            function addSeparator() {
-                var hr = document.createElement('hr');
-                $('controls').appendChild(hr);
-            }
-            function addHeader(header) {
-                var h = document.createElement('h3');
-                h.innerText = header;
-                $('controls').appendChild(h);
-            }
-            function listHetGroups(info) {
-                var div = $('het-groups');
-                div.innerHTML = '';
-                info.hetResidues.forEach(function (r) {
-                    var l = document.createElement('button');
-                    l.innerText = r.name;
-                    l.onclick = function () {
-                        PluginWrapper.hetGroups.focusFirst(r.name, { doNotLabelWaters: true });
-                    };
-                    div.appendChild(l);
-                });
-            }
-        </script>
-    </body>
+<!DOCTYPE html>
+<html lang="en">
+    <head>
+        <meta charset="utf-8" />
+        <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
+        <title>Mol* Proteopedia Wrapper</title>
+        <style>
+            * {
+                margin: 0;
+                padding: 0;
+                box-sizing: border-box;
+            }
+            #app {
+                position: absolute;
+                left: 160px;
+                top: 100px;
+                width: 600px;
+                height: 600px;
+                border: 1px solid #ccc;
+            }
+            #controls {
+                position: absolute;
+                width: 130px;
+                top: 10px;
+                left: 10px;
+            }
+            #controls > button {
+                display: block;
+                width: 100%;
+                text-align: left;
+            }
+            #controls > hr {
+                margin: 5px 0;
+            }
+            #controls > input, #controls > select {
+                width: 100%;
+                display: block;
+            }
+            #volume-streaming-wrapper {
+                position: absolute;
+                top: 100px;
+                left: 780px;
+                width: 300px;
+            }
+        </style>
+        <link rel="stylesheet" type="text/css" href="molstar.css" />
+        <script type="text/javascript" src="./index.js"></script>
+    </head>
+    <body>
+        <div id='controls'>
+            <h3>Source</h3>
+            <input type='text' id='url' placeholder='url' style='width: 400px' />
+            <input type='text' id='assemblyId' placeholder='assembly id' />
+            <select id='format'>
+                <option value='cif' selected>CIF</option>
+                <option value='pdb'>PDB</option>
+            </select>
+            <input type='checkbox' id='isBinary' style="display: inline-block; width: auto" /> <label for="isBinary"> Binary</label><br />
+        </div>
+        <div id="app"></div>
+        <div id="volume-streaming-wrapper"></div>
+        <script>
+            // it might be a good idea to define these colors in a separate script file
+            var CustomColors = [0x00ff00, 0x0000ff];
+            // create an instance of the plugin
+            var PluginWrapper = new MolStarProteopediaWrapper();
+            console.log('Wrapper version', MolStarProteopediaWrapper.VERSION_MAJOR, MolStarProteopediaWrapper.VERSION_MINOR);
+            function $(id) { return document.getElementById(id); }
+            var pdbId = '1cbs', assemblyId= 'preferred', isBinary = true;
+            var url = 'https://www.ebi.ac.uk/pdbe/entry-files/download/' + pdbId + '.bcif'
+            var format = 'cif';
+            $('url').value = url;
+            $('url').onchange = function (e) { url = e.target.value; }
+            $('assemblyId').value = assemblyId;
+            $('assemblyId').onchange = function (e) { assemblyId = e.target.value; }
+            $('format').value = format;
+            $('format').onchange = function (e) { format = e.target.value; }
+            $('isBinary').checked = isBinary;
+            $('isBinary').onchange = function (e) { isBinary = !!e.target.checked; };
+            function loadAndSnapshot(params) {
+                PluginWrapper.load(params).then(() => {
+                    setTimeout(() => snapshot = PluginWrapper.plugin.state.getSnapshot({ canvas3d: false /* do not save spinning state */ }), 500);
+                });
+            }
+            var representationStyle = {
+                // sequence: { coloring: 'proteopedia-custom' }, // or just { }
+                hetGroups: { kind: 'ball-and-stick' }, // or 'spacefill
+                water: { hide: true },
+                snfg3d: { hide: false }
+            };
+            PluginWrapper.init('app' /** or document.getElementById('app') */, {
+                customColorList: CustomColors
+            }).then(() => {
+                PluginWrapper.setBackground(0xffffff);
+                loadAndSnapshot({ url: url, format: format, isBinary: isBinary, assemblyId: assemblyId, representationStyle: representationStyle });
+                PluginWrapper.toggleSpin();
+            });
+            PluginWrapper.events.modelInfo.subscribe(function (info) {
+                console.log('Model Info', info);
+                listHetGroups(info);
+            });
+            addControl('Load Asym Unit', () => loadAndSnapshot({ url: url, format: format, isBinary }));
+            addControl('Load Assembly', () => loadAndSnapshot({ url: url, format: format, isBinary, assemblyId: assemblyId }));
+            addSeparator();
+            addHeader('Representation');
+            addControl('Custom Chain Colors', () => PluginWrapper.updateStyle({ sequence: { coloring: 'proteopedia-custom' } }, true));
+            addControl('Default Chain Colors', () => PluginWrapper.updateStyle({ sequence: { } }, true));
+            addControl('HET Spacefill', () => PluginWrapper.updateStyle({ hetGroups: { kind: 'spacefill' } }, true));
+            addControl('HET Ball-and-stick', () => PluginWrapper.updateStyle({ hetGroups: { kind: 'ball-and-stick' } }, true));
+            addControl('Hide 3DSNFG', () => PluginWrapper.updateStyle({ snfg3d: { hide: true } }, true));
+            addControl('Show 3DSNFG', () => PluginWrapper.updateStyle({ snfg3d: { hide: false } }, true));
+            addControl('Hide Water', () => PluginWrapper.updateStyle({ water: { hide: true } }, true));
+            addControl('Show Water', () => PluginWrapper.updateStyle({ water: { hide: false } }, true));
+            addSeparator();
+            addHeader('Camera');
+            addControl('Reset Position', () => PluginWrapper.camera.resetPosition());
+            addControl('Toggle Spin', () => PluginWrapper.camera.toggleSpin());
+            // Same as "wheel icon" and Viewport options
+            // addControl('Clip', () => PluginWrapper.viewport.setSettings({ clip: [33, 66] }));
+            // addControl('Reset Clip', () => PluginWrapper.viewport.setSettings({ clip: [1, 100] }));
+            addSeparator();
+            addHeader('Animation');
+            // adjust this number to make the animation faster or slower
+            // requires to "restart" the animation if changed
+            PluginWrapper.animate.modelIndex.targetFps = 30;
+            addControl('Play To End', () => PluginWrapper.animate.modelIndex.onceForward());
+            addControl('Play To Start', () => PluginWrapper.animate.modelIndex.onceBackward());
+            addControl('Play Palindrome', () => PluginWrapper.animate.modelIndex.palindrome());
+            addControl('Play Loop', () => PluginWrapper.animate.modelIndex.loop());
+            addControl('Stop', () => PluginWrapper.animate.modelIndex.stop());
+            addSeparator();
+            addHeader('Misc');
+            addControl('Apply Evo Cons Style', () => PluginWrapper.coloring.evolutionaryConservation());
+            addControl('Apply Evo Cons Colors', () => PluginWrapper.coloring.evolutionaryConservation({ sequence: true, het: false, keepStyle: true }));
+            addControl('Default Visuals', () => PluginWrapper.updateStyle());
+            addSeparator();
+            addHeader('HET Groups');
+            addControl('Reset', () => PluginWrapper.hetGroups.reset());
+            addHetGroupsContainer();
+            addSeparator();
+            addHeader('Exp. Data');
+            addControl('Init', () => PluginWrapper.experimentalData.init($('volume-streaming-wrapper')));
+            addControl('Remove', () => PluginWrapper.experimentalData.remove());
+            addSeparator();
+            addHeader('State');
+            var snapshot;
+            addControl('Set Snapshot', () => {
+                // const options = { data: true, behavior: false, animation: false, interactivity: false, canvas3d: false, camera: false, cameraTransition: false };
+                snapshot = PluginWrapper.plugin.state.getSnapshot(/** options */);
+                // console.log(JSON.stringify(snapshot, null, 2));
+            });
+            addControl('Restore Snapshot', () => {
+                if (!snapshot) return;
+                PluginWrapper.snapshot.set(snapshot);
+            });
+            addControl('Download State', () => {
+                PluginWrapper.snapshot.download('molj');
+            });
+            addControl('Download Session', () => {
+                PluginWrapper.snapshot.download('molx');
+            });
+            ////////////////////////////////////////////////////////
+            function addHetGroupsContainer() {
+                var div = document.createElement('div');
+                div.id = 'het-groups';
+                $('controls').appendChild(div);
+            }
+            function addControl(label, action) {
+                var btn = document.createElement('button');
+                btn.onclick = action;
+                btn.innerText = label;
+                $('controls').appendChild(btn);
+            }
+            function addSeparator() {
+                var hr = document.createElement('hr');
+                $('controls').appendChild(hr);
+            }
+            function addHeader(header) {
+                var h = document.createElement('h3');
+                h.innerText = header;
+                $('controls').appendChild(h);
+            }
+            function listHetGroups(info) {
+                var div = $('het-groups');
+                div.innerHTML = '';
+                info.hetResidues.forEach(function (r) {
+                    var l = document.createElement('button');
+                    l.innerText = r.name;
+                    l.onclick = function () {
+                        PluginWrapper.hetGroups.focusFirst(r.name, { doNotLabelWaters: true });
+                    };
+                    div.appendChild(l);
+                });
+            }
+        </script>
+    </body>
 </html>

package/lib/mol-geo/geometry/cylinders/cylinders.d.ts CHANGED Viewed

@@ -48,8 +48,8 @@ export declare namespace Cylinders {
         alpha: PD.Numeric;
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
         material: PD.Group<PD.Normalize<{
-            metalness: number;
-            roughness: number; /** Number of cylinders */
+            metalness: number; /** Number of cylinders */
+            roughness: number;
             bumpiness: number;
         }>>;
         clip: PD.Group<PD.Normalize<{

package/lib/mol-geo/geometry/lines/lines.d.ts CHANGED Viewed

@@ -44,6 +44,7 @@ export declare namespace Lines {
         material: PD.Group<PD.Normalize<{
             metalness: number;
             roughness: number;
+            /** Number of lines */
             bumpiness: number;
         }>>;
         clip: PD.Group<PD.Normalize<{

package/lib/mol-geo/geometry/points/points.d.ts CHANGED Viewed

@@ -43,7 +43,7 @@ export declare namespace Points {
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
         material: PD.Group<PD.Normalize<{
             metalness: number;
-            roughness: number; /** Number of vertices in the point cloud */
+            roughness: number;
             bumpiness: number;
         }>>;
         clip: PD.Group<PD.Normalize<{

package/lib/mol-math/geometry/primitives/sphere3d.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>

package/lib/mol-math/geometry/primitives/sphere3d.js CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
@@ -7,6 +7,8 @@
 import { __spreadArray } from "tslib";
 import { Vec3, Mat4, EPSILON } from '../../linear-algebra';
 import { OrderedSet } from '../../../mol-data/int';
+import { Axes3D } from './axes3d';
+import { PrincipalAxes } from '../../linear-algebra/matrix/principal-axes';
 function Sphere3D() {
     return Sphere3D.zero();
 }
@@ -193,11 +195,22 @@ function Sphere3D() {
             return out;
         }
         if (hasExtrema(sphere)) {
+            var positions = new Float32Array(sphere.extrema.length * 3);
+            for (var i = 0; i < sphere.extrema.length; i++) {
+                Vec3.toArray(sphere.extrema[i], positions, i * 3);
+            }
+            var axes_1 = PrincipalAxes.calculateMomentsAxes(positions);
+            Axes3D.scale(axes_1, Axes3D.normalize(axes_1, axes_1), delta);
             setExtrema(out, sphere.extrema.map(function (e) {
                 Vec3.sub(tmpDir, e, sphere.center);
-                var dist = Vec3.distance(sphere.center, e);
-                Vec3.normalize(tmpDir, tmpDir);
-                return Vec3.scaleAndAdd(Vec3(), sphere.center, tmpDir, dist + delta);
+                var out = Vec3.clone(e);
+                var sA = Vec3.dot(tmpDir, axes_1.dirA) < 0 ? -1 : 1;
+                Vec3.scaleAndAdd(out, out, axes_1.dirA, sA);
+                var sB = Vec3.dot(tmpDir, axes_1.dirB) < 0 ? -1 : 1;
+                Vec3.scaleAndAdd(out, out, axes_1.dirB, sB);
+                var sC = Vec3.dot(tmpDir, axes_1.dirC) < 0 ? -1 : 1;
+                Vec3.scaleAndAdd(out, out, axes_1.dirC, sC);
+                return out;
             }));
         }
         return out;

package/lib/mol-model/structure/structure/element/loci.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>

package/lib/mol-model/structure/structure/element/loci.js CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
@@ -487,7 +487,9 @@ export function Loci(structure, elements) {
             if (!elementIndices)
                 continue;
             var indices = getUnitIndices(unit.elements, elementIndices);
-            elements[elements.length] = { unit: unit, indices: indices };
+            if (OrderedSet.size(indices)) {
+                elements[elements.length] = { unit: unit, indices: indices };
+            }
         }
         return Loci(loci.structure, elements);
     }

package/lib/mol-plugin/behavior/dynamic/representation.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>

package/lib/mol-plugin/behavior/dynamic/representation.js CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
@@ -213,11 +213,16 @@ export var DefaultLociLabelProvider = PluginBehavior.create({
             this.f = {
                 label: function (loci) {
                     var label = [];
-                    if (StructureElement.Loci.is(loci) && loci.elements.length === 1) {
-                        var u = loci.elements[0].unit;
-                        var l = StructureElement.Location.create(loci.structure, u, u.elements[0]);
-                        var name_1 = StructureProperties.entity.pdbx_description(l).join(', ');
-                        label.push(name_1);
+                    if (StructureElement.Loci.is(loci)) {
+                        var entityNames = new Set();
+                        for (var _i = 0, _a = loci.elements; _i < _a.length; _i++) {
+                            var u = _a[_i].unit;
+                            var l = StructureElement.Location.create(loci.structure, u, u.elements[0]);
+                            var name_1 = StructureProperties.entity.pdbx_description(l).join(', ');
+                            entityNames.add(name_1);
+                        }
+                        if (entityNames.size === 1)
+                            entityNames.forEach(function (name) { return label.push(name); });
                     }
                     label.push(lociLabel(loci));
                     return label.filter(function (l) { return !!l; }).join('</br>');

package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts CHANGED Viewed

@@ -9,12 +9,12 @@ import { Volume } from '../../../../mol-model/volume';
 import { Structure } from '../../../../mol-model/structure';
 declare const VolumeServerInfo_base: {
     new (data: VolumeServerInfo.Data, props?: {
-        /** Precision data the server can show. */
-        label: string;
+        label: string; /** Precision data the server can show. */
         description?: string | undefined;
     } | undefined): {
         id: import("../../../../mol-util/uuid").UUID;
         type: PluginStateObject.TypeInfo;
+        /** The value are stored in blockSize^3 cubes */
         label: string;
         description?: string | undefined;
         data: VolumeServerInfo.Data;
@@ -23,6 +23,7 @@ declare const VolumeServerInfo_base: {
     is(obj?: import("../../../../mol-state/object").StateObject<any, import("../../../../mol-state/object").StateObject.Type<any>> | undefined): obj is {
         id: import("../../../../mol-util/uuid").UUID;
         type: PluginStateObject.TypeInfo;
+        /** The value are stored in blockSize^3 cubes */
         label: string;
         description?: string | undefined;
         data: VolumeServerInfo.Data;