molstar 3.0.0-dev.7 → 3.0.0-dev.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (245) hide show
  1. package/build/viewer/index.html +4 -0
  2. package/build/viewer/molstar.js +1 -1
  3. package/lib/apps/viewer/index.d.ts +1 -0
  4. package/lib/apps/viewer/index.html +4 -0
  5. package/lib/apps/viewer/index.js +2 -0
  6. package/lib/commonjs/apps/viewer/index.d.ts +1 -0
  7. package/lib/commonjs/apps/viewer/index.js +2 -0
  8. package/lib/commonjs/examples/alpha-orbitals/index.js +1 -1
  9. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +4 -4
  10. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
  11. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +1 -1
  12. package/lib/commonjs/mol-canvas3d/canvas3d.js +33 -29
  13. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +13 -1
  14. package/lib/commonjs/mol-canvas3d/passes/draw.js +16 -15
  15. package/lib/commonjs/mol-canvas3d/passes/image.js +3 -2
  16. package/lib/commonjs/mol-canvas3d/passes/marking.js +1 -1
  17. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +9 -2
  18. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +14 -12
  19. package/lib/commonjs/mol-canvas3d/passes/pick.js +3 -3
  20. package/lib/commonjs/mol-geo/geometry/color-data.d.ts +1 -1
  21. package/lib/commonjs/mol-geo/geometry/color-data.js +22 -0
  22. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +1 -1
  23. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +5 -38
  24. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +21 -66
  25. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
  26. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
  27. package/lib/commonjs/mol-geo/geometry/image/image.js +1 -1
  28. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  29. package/lib/commonjs/mol-geo/geometry/marker-data.js +13 -5
  30. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
  31. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  32. package/lib/commonjs/mol-geo/geometry/size-data.js +5 -5
  33. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +1 -1
  34. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  35. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +1 -1
  36. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +2 -2
  37. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
  38. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -9
  39. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
  40. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +6 -10
  41. package/lib/commonjs/mol-gl/renderable/direct-volume.js +1 -1
  42. package/lib/commonjs/mol-gl/renderable/image.d.ts +1 -0
  43. package/lib/commonjs/mol-gl/renderable/lines.d.ts +1 -0
  44. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +1 -0
  45. package/lib/commonjs/mol-gl/renderable/points.d.ts +1 -0
  46. package/lib/commonjs/mol-gl/renderable/schema.d.ts +1 -0
  47. package/lib/commonjs/mol-gl/renderable/schema.js +2 -2
  48. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +1 -0
  49. package/lib/commonjs/mol-gl/renderable/text.d.ts +1 -0
  50. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +1 -1
  51. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
  52. package/lib/commonjs/mol-gl/renderer.js +12 -19
  53. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  54. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  55. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
  56. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
  57. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
  58. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
  59. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
  60. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
  61. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  62. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  63. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  64. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  65. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  66. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  67. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  68. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  69. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.d.ts +1 -1
  70. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +1 -1
  71. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +1 -1
  72. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +1 -1
  73. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  74. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  75. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +1 -1
  76. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +1 -1
  77. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  78. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  79. package/lib/commonjs/mol-gl/shader-code.js +1 -1
  80. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +2 -2
  81. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +4 -6
  82. package/lib/commonjs/mol-plugin/config.d.ts +0 -1
  83. package/lib/commonjs/mol-plugin/config.js +4 -25
  84. package/lib/commonjs/mol-plugin/features.d.ts +9 -0
  85. package/lib/commonjs/mol-plugin/features.js +38 -0
  86. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
  87. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +3 -1
  88. package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
  89. package/lib/commonjs/mol-repr/structure/complex-representation.js +1 -1
  90. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -19
  91. package/lib/commonjs/mol-repr/structure/params.d.ts +1 -19
  92. package/lib/commonjs/mol-repr/structure/registry.d.ts +1 -19
  93. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +1 -1
  94. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +4 -58
  95. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +2 -7
  96. package/lib/commonjs/mol-repr/structure/representation/label.js +1 -1
  97. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +1 -1
  98. package/lib/commonjs/mol-repr/structure/units-representation.js +1 -1
  99. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -19
  100. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -38
  101. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
  102. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
  103. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
  104. package/lib/commonjs/mol-repr/structure/visual/label-text.js +1 -2
  105. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
  106. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
  107. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +3 -2
  108. package/lib/commonjs/mol-repr/structure/visual/util/common.js +2 -5
  109. package/lib/commonjs/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
  110. package/lib/commonjs/mol-repr/structure/visual/util/gaussian.js +12 -12
  111. package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
  112. package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.js +4 -4
  113. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +3 -57
  114. package/lib/commonjs/mol-repr/volume/direct-volume.js +8 -12
  115. package/lib/commonjs/mol-repr/volume/isosurface.js +11 -2
  116. package/lib/commonjs/mol-repr/volume/registry.d.ts +1 -19
  117. package/lib/commonjs/mol-repr/volume/slice.js +2 -2
  118. package/lib/commonjs/mol-repr/volume/util.js +2 -2
  119. package/lib/commonjs/mol-theme/color/volume-value.d.ts +17 -0
  120. package/lib/commonjs/mol-theme/color/volume-value.js +57 -0
  121. package/lib/commonjs/mol-theme/color.d.ts +3 -0
  122. package/lib/commonjs/mol-theme/color.js +2 -0
  123. package/lib/commonjs/mol-util/number-packing.d.ts +11 -0
  124. package/lib/commonjs/mol-util/{float-packing.js → number-packing.js} +10 -19
  125. package/lib/examples/alpha-orbitals/index.js +1 -1
  126. package/lib/extensions/geo-export/mesh-exporter.js +4 -4
  127. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
  128. package/lib/mol-canvas3d/canvas3d.d.ts +1 -1
  129. package/lib/mol-canvas3d/canvas3d.js +33 -29
  130. package/lib/mol-canvas3d/passes/draw.d.ts +13 -1
  131. package/lib/mol-canvas3d/passes/draw.js +16 -15
  132. package/lib/mol-canvas3d/passes/image.js +3 -2
  133. package/lib/mol-canvas3d/passes/marking.js +1 -1
  134. package/lib/mol-canvas3d/passes/multi-sample.d.ts +9 -2
  135. package/lib/mol-canvas3d/passes/multi-sample.js +14 -12
  136. package/lib/mol-canvas3d/passes/pick.js +2 -2
  137. package/lib/mol-geo/geometry/color-data.d.ts +1 -1
  138. package/lib/mol-geo/geometry/color-data.js +22 -0
  139. package/lib/mol-geo/geometry/cylinders/cylinders.js +1 -1
  140. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +5 -38
  141. package/lib/mol-geo/geometry/direct-volume/direct-volume.js +22 -67
  142. package/lib/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
  143. package/lib/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
  144. package/lib/mol-geo/geometry/image/image.js +1 -1
  145. package/lib/mol-geo/geometry/lines/lines.js +1 -1
  146. package/lib/mol-geo/geometry/marker-data.js +13 -5
  147. package/lib/mol-geo/geometry/mesh/mesh.js +1 -1
  148. package/lib/mol-geo/geometry/points/points.js +1 -1
  149. package/lib/mol-geo/geometry/size-data.js +5 -5
  150. package/lib/mol-geo/geometry/spheres/spheres.js +1 -1
  151. package/lib/mol-geo/geometry/text/text.js +1 -1
  152. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +1 -1
  153. package/lib/mol-gl/compute/histogram-pyramid/sum.js +2 -2
  154. package/lib/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
  155. package/lib/mol-gl/compute/marching-cubes/isosurface.js +10 -9
  156. package/lib/mol-gl/renderable/cylinders.d.ts +1 -0
  157. package/lib/mol-gl/renderable/direct-volume.d.ts +6 -10
  158. package/lib/mol-gl/renderable/direct-volume.js +1 -1
  159. package/lib/mol-gl/renderable/image.d.ts +1 -0
  160. package/lib/mol-gl/renderable/lines.d.ts +1 -0
  161. package/lib/mol-gl/renderable/mesh.d.ts +1 -0
  162. package/lib/mol-gl/renderable/points.d.ts +1 -0
  163. package/lib/mol-gl/renderable/schema.d.ts +1 -0
  164. package/lib/mol-gl/renderable/schema.js +2 -2
  165. package/lib/mol-gl/renderable/spheres.d.ts +1 -0
  166. package/lib/mol-gl/renderable/text.d.ts +1 -0
  167. package/lib/mol-gl/renderable/texture-mesh.d.ts +1 -1
  168. package/lib/mol-gl/renderable/texture-mesh.js +1 -1
  169. package/lib/mol-gl/renderer.js +12 -19
  170. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  171. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  172. package/lib/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
  173. package/lib/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
  174. package/lib/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
  175. package/lib/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
  176. package/lib/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
  177. package/lib/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
  178. package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  179. package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
  180. package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  181. package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  182. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  183. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  184. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  185. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  186. package/lib/mol-gl/shader/gaussian-density.frag.d.ts +1 -1
  187. package/lib/mol-gl/shader/gaussian-density.frag.js +1 -1
  188. package/lib/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +1 -1
  189. package/lib/mol-gl/shader/histogram-pyramid/reduction.frag.js +1 -1
  190. package/lib/mol-gl/shader/image.frag.d.ts +1 -1
  191. package/lib/mol-gl/shader/image.frag.js +1 -1
  192. package/lib/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +1 -1
  193. package/lib/mol-gl/shader/marching-cubes/isosurface.frag.js +1 -1
  194. package/lib/mol-gl/shader/mesh.vert.d.ts +1 -1
  195. package/lib/mol-gl/shader/mesh.vert.js +1 -1
  196. package/lib/mol-gl/shader-code.js +1 -1
  197. package/lib/mol-math/geometry/gaussian-density/gpu.js +2 -2
  198. package/lib/mol-plugin/behavior/dynamic/representation.js +4 -6
  199. package/lib/mol-plugin/config.d.ts +0 -1
  200. package/lib/mol-plugin/config.js +3 -23
  201. package/lib/mol-plugin/features.d.ts +9 -0
  202. package/lib/mol-plugin/features.js +35 -0
  203. package/lib/mol-plugin/version.js +2 -2
  204. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
  205. package/lib/mol-plugin-state/manager/structure/selection.js +3 -1
  206. package/lib/mol-plugin-state/transforms/representation.js +2 -2
  207. package/lib/mol-repr/structure/complex-representation.js +1 -1
  208. package/lib/mol-repr/structure/complex-visual.d.ts +1 -19
  209. package/lib/mol-repr/structure/params.d.ts +1 -19
  210. package/lib/mol-repr/structure/registry.d.ts +1 -19
  211. package/lib/mol-repr/structure/representation/gaussian-surface.js +1 -1
  212. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +4 -58
  213. package/lib/mol-repr/structure/representation/gaussian-volume.js +2 -7
  214. package/lib/mol-repr/structure/representation/label.js +1 -1
  215. package/lib/mol-repr/structure/representation/molecular-surface.js +1 -1
  216. package/lib/mol-repr/structure/units-representation.js +1 -1
  217. package/lib/mol-repr/structure/units-visual.d.ts +1 -19
  218. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -38
  219. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
  220. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
  221. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
  222. package/lib/mol-repr/structure/visual/label-text.js +1 -2
  223. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
  224. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
  225. package/lib/mol-repr/structure/visual/util/common.d.ts +3 -2
  226. package/lib/mol-repr/structure/visual/util/common.js +2 -5
  227. package/lib/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
  228. package/lib/mol-repr/structure/visual/util/gaussian.js +12 -12
  229. package/lib/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
  230. package/lib/mol-repr/structure/visual/util/molecular-surface.js +4 -4
  231. package/lib/mol-repr/volume/direct-volume.d.ts +3 -57
  232. package/lib/mol-repr/volume/direct-volume.js +8 -12
  233. package/lib/mol-repr/volume/isosurface.js +11 -2
  234. package/lib/mol-repr/volume/registry.d.ts +1 -19
  235. package/lib/mol-repr/volume/slice.js +2 -2
  236. package/lib/mol-repr/volume/util.js +2 -2
  237. package/lib/mol-theme/color/volume-value.d.ts +17 -0
  238. package/lib/mol-theme/color/volume-value.js +52 -0
  239. package/lib/mol-theme/color.d.ts +3 -0
  240. package/lib/mol-theme/color.js +2 -0
  241. package/lib/mol-util/number-packing.d.ts +11 -0
  242. package/lib/mol-util/{float-packing.js → number-packing.js} +7 -14
  243. package/package.json +1 -1
  244. package/lib/commonjs/mol-util/float-packing.d.ts +0 -15
  245. package/lib/mol-util/float-packing.d.ts +0 -15

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