molstar 3.0.0-dev.6 → 3.0.0-dev.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.js +1 -1
- package/lib/commonjs/extensions/anvil/behavior.d.ts +4 -0
- package/lib/commonjs/extensions/anvil/representation.d.ts +50 -0
- package/lib/commonjs/extensions/cellpack/representation.d.ts +10 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +30 -0
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -0
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +10 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +50 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -8
- package/lib/commonjs/mol-canvas3d/canvas3d.js +2 -1
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/pick.js +9 -9
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +3 -3
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +18 -0
- package/lib/commonjs/mol-geo/geometry/base.js +18 -1
- package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +2 -2
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.js +0 -4
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
- package/lib/commonjs/mol-gl/render-object.js +10 -10
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +10 -5
- package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +10 -5
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
- package/lib/commonjs/mol-gl/renderable/image.d.ts +9 -4
- package/lib/commonjs/mol-gl/renderable/image.js +2 -2
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +38 -33
- package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +10 -5
- package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
- package/lib/commonjs/mol-gl/renderable/points.d.ts +9 -4
- package/lib/commonjs/mol-gl/renderable/points.js +2 -2
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +9 -11
- package/lib/commonjs/mol-gl/renderable/schema.js +3 -9
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +10 -5
- package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
- package/lib/commonjs/mol-gl/renderable/text.d.ts +9 -4
- package/lib/commonjs/mol-gl/renderable/text.js +2 -2
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +10 -5
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
- package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
- package/lib/commonjs/mol-gl/renderer.js +12 -74
- package/lib/commonjs/mol-gl/scene.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +7 -5
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
- package/lib/commonjs/mol-gl/shader-code.js +42 -13
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
- package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
- package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +20 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +30 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +40 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +11 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -4
- package/lib/commonjs/mol-plugin/spec.js +1 -0
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +12 -0
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +13 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +32 -0
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -6
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +60 -0
- package/lib/commonjs/mol-repr/structure/params.d.ts +80 -0
- package/lib/commonjs/mol-repr/structure/registry.d.ts +140 -0
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +80 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/visual.js +11 -7
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +30 -0
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +60 -0
- package/lib/commonjs/mol-repr/volume/registry.d.ts +30 -0
- package/lib/commonjs/mol-repr/volume/representation.d.ts +10 -0
- package/lib/commonjs/mol-repr/volume/slice.d.ts +30 -0
- package/lib/commonjs/mol-theme/clipping.d.ts +7 -15
- package/lib/commonjs/mol-theme/clipping.js +5 -12
- package/lib/commonjs/mol-util/clip.d.ts +49 -0
- package/lib/commonjs/mol-util/clip.js +97 -0
- package/lib/extensions/anvil/behavior.d.ts +4 -0
- package/lib/extensions/anvil/representation.d.ts +50 -0
- package/lib/extensions/cellpack/representation.d.ts +10 -0
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +30 -0
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -0
- package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +10 -0
- package/lib/extensions/rcsb/validation-report/representation.d.ts +50 -0
- package/lib/mol-canvas3d/canvas3d.d.ts +2 -8
- package/lib/mol-canvas3d/canvas3d.js +2 -1
- package/lib/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
- package/lib/mol-canvas3d/helper/camera-helper.d.ts +4 -0
- package/lib/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +4 -0
- package/lib/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/mol-canvas3d/passes/pick.js +9 -9
- package/lib/mol-canvas3d/passes/postprocessing.js +3 -3
- package/lib/mol-canvas3d/passes/smaa.js +1 -1
- package/lib/mol-geo/geometry/base.d.ts +18 -0
- package/lib/mol-geo/geometry/base.js +18 -1
- package/lib/mol-geo/geometry/clipping-data.d.ts +1 -3
- package/lib/mol-geo/geometry/clipping-data.js +3 -8
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +10 -0
- package/lib/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +10 -0
- package/lib/mol-geo/geometry/direct-volume/direct-volume.js +2 -2
- package/lib/mol-geo/geometry/image/image.d.ts +10 -0
- package/lib/mol-geo/geometry/lines/lines.d.ts +10 -0
- package/lib/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/mol-geo/geometry/marker-data.d.ts +0 -1
- package/lib/mol-geo/geometry/marker-data.js +0 -4
- package/lib/mol-geo/geometry/mesh/mesh.d.ts +10 -0
- package/lib/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/mol-geo/geometry/points/points.d.ts +10 -0
- package/lib/mol-geo/geometry/spheres/spheres.d.ts +10 -0
- package/lib/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/mol-geo/geometry/text/text.d.ts +10 -0
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +10 -0
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/mol-gl/render-object.d.ts +2 -1
- package/lib/mol-gl/render-object.js +10 -10
- package/lib/mol-gl/renderable/cylinders.d.ts +10 -5
- package/lib/mol-gl/renderable/cylinders.js +3 -3
- package/lib/mol-gl/renderable/direct-volume.d.ts +10 -5
- package/lib/mol-gl/renderable/direct-volume.js +3 -3
- package/lib/mol-gl/renderable/image.d.ts +9 -4
- package/lib/mol-gl/renderable/image.js +2 -2
- package/lib/mol-gl/renderable/lines.d.ts +38 -33
- package/lib/mol-gl/renderable/lines.js +4 -4
- package/lib/mol-gl/renderable/mesh.d.ts +10 -5
- package/lib/mol-gl/renderable/mesh.js +3 -3
- package/lib/mol-gl/renderable/points.d.ts +9 -4
- package/lib/mol-gl/renderable/points.js +2 -2
- package/lib/mol-gl/renderable/schema.d.ts +9 -11
- package/lib/mol-gl/renderable/schema.js +3 -9
- package/lib/mol-gl/renderable/spheres.d.ts +10 -5
- package/lib/mol-gl/renderable/spheres.js +3 -3
- package/lib/mol-gl/renderable/text.d.ts +9 -4
- package/lib/mol-gl/renderable/text.js +2 -2
- package/lib/mol-gl/renderable/texture-mesh.d.ts +10 -5
- package/lib/mol-gl/renderable/texture-mesh.js +3 -3
- package/lib/mol-gl/renderable.d.ts +0 -1
- package/lib/mol-gl/renderer.d.ts +12 -12
- package/lib/mol-gl/renderer.js +13 -75
- package/lib/mol-gl/scene.d.ts +2 -2
- package/lib/mol-gl/scene.js +7 -5
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/mol-gl/shader/image.frag.js +1 -1
- package/lib/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/mol-gl/shader/mesh.vert.d.ts +1 -1
- package/lib/mol-gl/shader/mesh.vert.js +1 -1
- package/lib/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/mol-gl/shader-code.d.ts +3 -1
- package/lib/mol-gl/shader-code.js +42 -13
- package/lib/mol-gl/webgl/render-item.d.ts +7 -6
- package/lib/mol-gl/webgl/render-item.js +8 -6
- package/lib/mol-gl/webgl/resources.js +8 -1
- package/lib/mol-math/linear-algebra/3d/quat.d.ts +9 -1
- package/lib/mol-math/linear-algebra/3d/quat.js +20 -1
- package/lib/mol-model-formats/shape/ply.d.ts +20 -0
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +10 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +10 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +30 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +40 -0
- package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +11 -0
- package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
- package/lib/mol-plugin/commands.d.ts +1 -4
- package/lib/mol-plugin/spec.js +1 -0
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +12 -0
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
- package/lib/mol-plugin-state/helpers/structure-clipping.js +1 -1
- package/lib/mol-plugin-state/manager/structure/component.d.ts +13 -1
- package/lib/mol-plugin-state/manager/structure/component.js +13 -8
- package/lib/mol-plugin-state/transforms/representation.d.ts +32 -0
- package/lib/mol-plugin-ui/viewport/simple-settings.js +2 -6
- package/lib/mol-repr/shape/loci/angle.d.ts +10 -0
- package/lib/mol-repr/shape/loci/common.d.ts +10 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +10 -0
- package/lib/mol-repr/shape/loci/distance.d.ts +10 -0
- package/lib/mol-repr/shape/loci/label.d.ts +10 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +10 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +10 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +10 -0
- package/lib/mol-repr/structure/complex-visual.d.ts +60 -0
- package/lib/mol-repr/structure/params.d.ts +80 -0
- package/lib/mol-repr/structure/registry.d.ts +140 -0
- package/lib/mol-repr/structure/representation/backbone.d.ts +30 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +30 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +30 -0
- package/lib/mol-repr/structure/representation/label.d.ts +30 -0
- package/lib/mol-repr/structure/representation/line.d.ts +30 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
- package/lib/mol-repr/structure/representation/orientation.d.ts +30 -0
- package/lib/mol-repr/structure/representation/point.d.ts +30 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +30 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +30 -0
- package/lib/mol-repr/structure/units-visual.d.ts +80 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-cross.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-point.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +20 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +20 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
- package/lib/mol-repr/structure/visual/label-text.d.ts +10 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +20 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +20 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +10 -0
- package/lib/mol-repr/visual.js +11 -7
- package/lib/mol-repr/volume/direct-volume.d.ts +30 -0
- package/lib/mol-repr/volume/isosurface.d.ts +60 -0
- package/lib/mol-repr/volume/registry.d.ts +30 -0
- package/lib/mol-repr/volume/representation.d.ts +10 -0
- package/lib/mol-repr/volume/slice.d.ts +30 -0
- package/lib/mol-theme/clipping.d.ts +7 -15
- package/lib/mol-theme/clipping.js +5 -12
- package/lib/mol-util/clip.d.ts +49 -0
- package/lib/mol-util/clip.js +93 -0
- package/package.json +1 -1
|
@@ -47,6 +47,16 @@ export declare const GaussianVolumeParams: {
|
|
|
47
47
|
roughness: number;
|
|
48
48
|
bumpiness: number;
|
|
49
49
|
}>>;
|
|
50
|
+
clip: PD.Group<PD.Normalize<{
|
|
51
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
52
|
+
objects: PD.Normalize<{
|
|
53
|
+
type: any;
|
|
54
|
+
invert: any;
|
|
55
|
+
position: any;
|
|
56
|
+
rotation: any;
|
|
57
|
+
scale: any;
|
|
58
|
+
}>[];
|
|
59
|
+
}>>;
|
|
50
60
|
};
|
|
51
61
|
export declare type GaussianVolumeParams = typeof GaussianVolumeParams;
|
|
52
62
|
export declare function getGaussianVolumeParams(ctx: ThemeRegistryContext, structure: Structure): {
|
|
@@ -88,6 +98,16 @@ export declare function getGaussianVolumeParams(ctx: ThemeRegistryContext, struc
|
|
|
88
98
|
roughness: number;
|
|
89
99
|
bumpiness: number;
|
|
90
100
|
}>>;
|
|
101
|
+
clip: PD.Group<PD.Normalize<{
|
|
102
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
103
|
+
objects: PD.Normalize<{
|
|
104
|
+
type: any;
|
|
105
|
+
invert: any;
|
|
106
|
+
position: any;
|
|
107
|
+
rotation: any;
|
|
108
|
+
scale: any;
|
|
109
|
+
}>[];
|
|
110
|
+
}>>;
|
|
91
111
|
};
|
|
92
112
|
export declare type GaussianVolumeRepresentation = StructureRepresentation<GaussianVolumeParams>;
|
|
93
113
|
export declare function GaussianVolumeRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, GaussianVolumeParams>): GaussianVolumeRepresentation;
|
|
@@ -130,4 +150,14 @@ export declare const GaussianVolumeRepresentationProvider: StructureRepresentati
|
|
|
130
150
|
roughness: number;
|
|
131
151
|
bumpiness: number;
|
|
132
152
|
}>>;
|
|
153
|
+
clip: PD.Group<PD.Normalize<{
|
|
154
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
155
|
+
objects: PD.Normalize<{
|
|
156
|
+
type: any;
|
|
157
|
+
invert: any;
|
|
158
|
+
position: any;
|
|
159
|
+
rotation: any;
|
|
160
|
+
scale: any;
|
|
161
|
+
}>[];
|
|
162
|
+
}>>;
|
|
133
163
|
}, "gaussian-volume">;
|
|
@@ -42,6 +42,16 @@ export declare const LabelParams: {
|
|
|
42
42
|
roughness: number;
|
|
43
43
|
bumpiness: number;
|
|
44
44
|
}>>;
|
|
45
|
+
clip: PD.Group<PD.Normalize<{
|
|
46
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
47
|
+
objects: PD.Normalize<{
|
|
48
|
+
type: any;
|
|
49
|
+
invert: any;
|
|
50
|
+
position: any;
|
|
51
|
+
rotation: any;
|
|
52
|
+
scale: any;
|
|
53
|
+
}>[];
|
|
54
|
+
}>>;
|
|
45
55
|
};
|
|
46
56
|
export declare type LabelParams = typeof LabelParams;
|
|
47
57
|
export declare function getLabelParams(ctx: ThemeRegistryContext, structure: Structure): {
|
|
@@ -78,6 +88,16 @@ export declare function getLabelParams(ctx: ThemeRegistryContext, structure: Str
|
|
|
78
88
|
roughness: number;
|
|
79
89
|
bumpiness: number;
|
|
80
90
|
}>>;
|
|
91
|
+
clip: PD.Group<PD.Normalize<{
|
|
92
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
93
|
+
objects: PD.Normalize<{
|
|
94
|
+
type: any;
|
|
95
|
+
invert: any;
|
|
96
|
+
position: any;
|
|
97
|
+
rotation: any;
|
|
98
|
+
scale: any;
|
|
99
|
+
}>[];
|
|
100
|
+
}>>;
|
|
81
101
|
};
|
|
82
102
|
export declare type LabelRepresentation = StructureRepresentation<LabelParams>;
|
|
83
103
|
export declare function LabelRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, LabelParams>): LabelRepresentation;
|
|
@@ -115,4 +135,14 @@ export declare const LabelRepresentationProvider: StructureRepresentationProvide
|
|
|
115
135
|
roughness: number;
|
|
116
136
|
bumpiness: number;
|
|
117
137
|
}>>;
|
|
138
|
+
clip: PD.Group<PD.Normalize<{
|
|
139
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
140
|
+
objects: PD.Normalize<{
|
|
141
|
+
type: any;
|
|
142
|
+
invert: any;
|
|
143
|
+
position: any;
|
|
144
|
+
rotation: any;
|
|
145
|
+
scale: any;
|
|
146
|
+
}>[];
|
|
147
|
+
}>>;
|
|
118
148
|
}, "label">;
|
|
@@ -26,6 +26,16 @@ export declare const LineParams: {
|
|
|
26
26
|
roughness: number;
|
|
27
27
|
bumpiness: number;
|
|
28
28
|
}>>;
|
|
29
|
+
clip: PD.Group<PD.Normalize<{
|
|
30
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
31
|
+
objects: PD.Normalize<{
|
|
32
|
+
type: any;
|
|
33
|
+
invert: any;
|
|
34
|
+
position: any;
|
|
35
|
+
rotation: any;
|
|
36
|
+
scale: any;
|
|
37
|
+
}>[];
|
|
38
|
+
}>>;
|
|
29
39
|
pointSizeAttenuation: PD.BooleanParam;
|
|
30
40
|
pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
|
|
31
41
|
includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
|
|
@@ -55,6 +65,16 @@ export declare function getLineParams(ctx: ThemeRegistryContext, structure: Stru
|
|
|
55
65
|
roughness: number;
|
|
56
66
|
bumpiness: number;
|
|
57
67
|
}>>;
|
|
68
|
+
clip: PD.Group<PD.Normalize<{
|
|
69
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
70
|
+
objects: PD.Normalize<{
|
|
71
|
+
type: any;
|
|
72
|
+
invert: any;
|
|
73
|
+
position: any;
|
|
74
|
+
rotation: any;
|
|
75
|
+
scale: any;
|
|
76
|
+
}>[];
|
|
77
|
+
}>>;
|
|
58
78
|
pointSizeAttenuation: PD.BooleanParam;
|
|
59
79
|
pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
|
|
60
80
|
includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
|
|
@@ -85,6 +105,16 @@ export declare const LineRepresentationProvider: StructureRepresentationProvider
|
|
|
85
105
|
roughness: number;
|
|
86
106
|
bumpiness: number;
|
|
87
107
|
}>>;
|
|
108
|
+
clip: PD.Group<PD.Normalize<{
|
|
109
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
110
|
+
objects: PD.Normalize<{
|
|
111
|
+
type: any;
|
|
112
|
+
invert: any;
|
|
113
|
+
position: any;
|
|
114
|
+
rotation: any;
|
|
115
|
+
scale: any;
|
|
116
|
+
}>[];
|
|
117
|
+
}>>;
|
|
88
118
|
pointSizeAttenuation: PD.BooleanParam;
|
|
89
119
|
pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
|
|
90
120
|
includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
|
|
@@ -27,6 +27,16 @@ export declare const MolecularSurfaceParams: {
|
|
|
27
27
|
roughness: number;
|
|
28
28
|
bumpiness: number;
|
|
29
29
|
}>>;
|
|
30
|
+
clip: PD.Group<PD.Normalize<{
|
|
31
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
32
|
+
objects: PD.Normalize<{
|
|
33
|
+
type: any;
|
|
34
|
+
invert: any;
|
|
35
|
+
position: any;
|
|
36
|
+
rotation: any;
|
|
37
|
+
scale: any;
|
|
38
|
+
}>[];
|
|
39
|
+
}>>;
|
|
30
40
|
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
|
|
31
41
|
resolutionFactor: number;
|
|
32
42
|
sampleStride: number;
|
|
@@ -58,6 +68,16 @@ export declare function getMolecularSurfaceParams(ctx: ThemeRegistryContext, str
|
|
|
58
68
|
roughness: number;
|
|
59
69
|
bumpiness: number;
|
|
60
70
|
}>>;
|
|
71
|
+
clip: PD.Group<PD.Normalize<{
|
|
72
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
73
|
+
objects: PD.Normalize<{
|
|
74
|
+
type: any;
|
|
75
|
+
invert: any;
|
|
76
|
+
position: any;
|
|
77
|
+
rotation: any;
|
|
78
|
+
scale: any;
|
|
79
|
+
}>[];
|
|
80
|
+
}>>;
|
|
61
81
|
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
|
|
62
82
|
resolutionFactor: number;
|
|
63
83
|
sampleStride: number;
|
|
@@ -90,6 +110,16 @@ export declare const MolecularSurfaceRepresentationProvider: StructureRepresenta
|
|
|
90
110
|
roughness: number;
|
|
91
111
|
bumpiness: number;
|
|
92
112
|
}>>;
|
|
113
|
+
clip: PD.Group<PD.Normalize<{
|
|
114
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
115
|
+
objects: PD.Normalize<{
|
|
116
|
+
type: any;
|
|
117
|
+
invert: any;
|
|
118
|
+
position: any;
|
|
119
|
+
rotation: any;
|
|
120
|
+
scale: any;
|
|
121
|
+
}>[];
|
|
122
|
+
}>>;
|
|
93
123
|
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
|
|
94
124
|
resolutionFactor: number;
|
|
95
125
|
sampleStride: number;
|
|
@@ -28,6 +28,16 @@ export declare const OrientationParams: {
|
|
|
28
28
|
roughness: number;
|
|
29
29
|
bumpiness: number;
|
|
30
30
|
}>>;
|
|
31
|
+
clip: PD.Group<PD.Normalize<{
|
|
32
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
33
|
+
objects: PD.Normalize<{
|
|
34
|
+
type: any;
|
|
35
|
+
invert: any;
|
|
36
|
+
position: any;
|
|
37
|
+
rotation: any;
|
|
38
|
+
scale: any;
|
|
39
|
+
}>[];
|
|
40
|
+
}>>;
|
|
31
41
|
};
|
|
32
42
|
export declare type OrientationParams = typeof OrientationParams;
|
|
33
43
|
export declare function getOrientationParams(ctx: ThemeRegistryContext, structure: Structure): {
|
|
@@ -50,6 +60,16 @@ export declare function getOrientationParams(ctx: ThemeRegistryContext, structur
|
|
|
50
60
|
roughness: number;
|
|
51
61
|
bumpiness: number;
|
|
52
62
|
}>>;
|
|
63
|
+
clip: PD.Group<PD.Normalize<{
|
|
64
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
65
|
+
objects: PD.Normalize<{
|
|
66
|
+
type: any;
|
|
67
|
+
invert: any;
|
|
68
|
+
position: any;
|
|
69
|
+
rotation: any;
|
|
70
|
+
scale: any;
|
|
71
|
+
}>[];
|
|
72
|
+
}>>;
|
|
53
73
|
};
|
|
54
74
|
export declare type OrientationRepresentation = StructureRepresentation<OrientationParams>;
|
|
55
75
|
export declare function OrientationRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, OrientationParams>): OrientationRepresentation;
|
|
@@ -73,4 +93,14 @@ export declare const OrientationRepresentationProvider: StructureRepresentationP
|
|
|
73
93
|
roughness: number;
|
|
74
94
|
bumpiness: number;
|
|
75
95
|
}>>;
|
|
96
|
+
clip: PD.Group<PD.Normalize<{
|
|
97
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
98
|
+
objects: PD.Normalize<{
|
|
99
|
+
type: any;
|
|
100
|
+
invert: any;
|
|
101
|
+
position: any;
|
|
102
|
+
rotation: any;
|
|
103
|
+
scale: any;
|
|
104
|
+
}>[];
|
|
105
|
+
}>>;
|
|
76
106
|
}, "orientation">;
|
|
@@ -23,6 +23,16 @@ export declare const PointParams: {
|
|
|
23
23
|
roughness: number;
|
|
24
24
|
bumpiness: number;
|
|
25
25
|
}>>;
|
|
26
|
+
clip: PD.Group<PD.Normalize<{
|
|
27
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
28
|
+
objects: PD.Normalize<{
|
|
29
|
+
type: any;
|
|
30
|
+
invert: any;
|
|
31
|
+
position: any;
|
|
32
|
+
rotation: any;
|
|
33
|
+
scale: any;
|
|
34
|
+
}>[];
|
|
35
|
+
}>>;
|
|
26
36
|
};
|
|
27
37
|
export declare type PointParams = typeof PointParams;
|
|
28
38
|
export declare function getPointParams(ctx: ThemeRegistryContext, structure: Structure): {
|
|
@@ -40,6 +50,16 @@ export declare function getPointParams(ctx: ThemeRegistryContext, structure: Str
|
|
|
40
50
|
roughness: number;
|
|
41
51
|
bumpiness: number;
|
|
42
52
|
}>>;
|
|
53
|
+
clip: PD.Group<PD.Normalize<{
|
|
54
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
55
|
+
objects: PD.Normalize<{
|
|
56
|
+
type: any;
|
|
57
|
+
invert: any;
|
|
58
|
+
position: any;
|
|
59
|
+
rotation: any;
|
|
60
|
+
scale: any;
|
|
61
|
+
}>[];
|
|
62
|
+
}>>;
|
|
43
63
|
};
|
|
44
64
|
export declare type PointRepresentation = StructureRepresentation<PointParams>;
|
|
45
65
|
export declare function PointRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, PointParams>): PointRepresentation;
|
|
@@ -58,4 +78,14 @@ export declare const PointRepresentationProvider: StructureRepresentationProvide
|
|
|
58
78
|
roughness: number;
|
|
59
79
|
bumpiness: number;
|
|
60
80
|
}>>;
|
|
81
|
+
clip: PD.Group<PD.Normalize<{
|
|
82
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
83
|
+
objects: PD.Normalize<{
|
|
84
|
+
type: any;
|
|
85
|
+
invert: any;
|
|
86
|
+
position: any;
|
|
87
|
+
rotation: any;
|
|
88
|
+
scale: any;
|
|
89
|
+
}>[];
|
|
90
|
+
}>>;
|
|
61
91
|
}, "point">;
|
|
@@ -28,6 +28,16 @@ export declare const PuttyParams: {
|
|
|
28
28
|
roughness: number;
|
|
29
29
|
bumpiness: number;
|
|
30
30
|
}>>;
|
|
31
|
+
clip: PD.Group<PD.Normalize<{
|
|
32
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
33
|
+
objects: PD.Normalize<{
|
|
34
|
+
type: any;
|
|
35
|
+
invert: any;
|
|
36
|
+
position: any;
|
|
37
|
+
rotation: any;
|
|
38
|
+
scale: any;
|
|
39
|
+
}>[];
|
|
40
|
+
}>>;
|
|
31
41
|
detail: PD.Numeric;
|
|
32
42
|
linearSegments: PD.Numeric;
|
|
33
43
|
};
|
|
@@ -52,6 +62,16 @@ export declare function getPuttyParams(ctx: ThemeRegistryContext, structure: Str
|
|
|
52
62
|
roughness: number;
|
|
53
63
|
bumpiness: number;
|
|
54
64
|
}>>;
|
|
65
|
+
clip: PD.Group<PD.Normalize<{
|
|
66
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
67
|
+
objects: PD.Normalize<{
|
|
68
|
+
type: any;
|
|
69
|
+
invert: any;
|
|
70
|
+
position: any;
|
|
71
|
+
rotation: any;
|
|
72
|
+
scale: any;
|
|
73
|
+
}>[];
|
|
74
|
+
}>>;
|
|
55
75
|
detail: PD.Numeric;
|
|
56
76
|
linearSegments: PD.Numeric;
|
|
57
77
|
};
|
|
@@ -77,6 +97,16 @@ export declare const PuttyRepresentationProvider: StructureRepresentationProvide
|
|
|
77
97
|
roughness: number;
|
|
78
98
|
bumpiness: number;
|
|
79
99
|
}>>;
|
|
100
|
+
clip: PD.Group<PD.Normalize<{
|
|
101
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
102
|
+
objects: PD.Normalize<{
|
|
103
|
+
type: any;
|
|
104
|
+
invert: any;
|
|
105
|
+
position: any;
|
|
106
|
+
rotation: any;
|
|
107
|
+
scale: any;
|
|
108
|
+
}>[];
|
|
109
|
+
}>>;
|
|
80
110
|
detail: PD.Numeric;
|
|
81
111
|
linearSegments: PD.Numeric;
|
|
82
112
|
}, "putty">;
|
|
@@ -28,6 +28,16 @@ export declare const SpacefillParams: {
|
|
|
28
28
|
roughness: number;
|
|
29
29
|
bumpiness: number;
|
|
30
30
|
}>>;
|
|
31
|
+
clip: PD.Group<PD.Normalize<{
|
|
32
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
33
|
+
objects: PD.Normalize<{
|
|
34
|
+
type: any;
|
|
35
|
+
invert: any;
|
|
36
|
+
position: any;
|
|
37
|
+
rotation: any;
|
|
38
|
+
scale: any;
|
|
39
|
+
}>[];
|
|
40
|
+
}>>;
|
|
31
41
|
flipSided: PD.BooleanParam;
|
|
32
42
|
flatShaded: PD.BooleanParam;
|
|
33
43
|
};
|
|
@@ -52,6 +62,16 @@ export declare function getSpacefillParams(ctx: ThemeRegistryContext, structure:
|
|
|
52
62
|
roughness: number;
|
|
53
63
|
bumpiness: number;
|
|
54
64
|
}>>;
|
|
65
|
+
clip: PD.Group<PD.Normalize<{
|
|
66
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
67
|
+
objects: PD.Normalize<{
|
|
68
|
+
type: any;
|
|
69
|
+
invert: any;
|
|
70
|
+
position: any;
|
|
71
|
+
rotation: any;
|
|
72
|
+
scale: any;
|
|
73
|
+
}>[];
|
|
74
|
+
}>>;
|
|
55
75
|
flipSided: PD.BooleanParam;
|
|
56
76
|
flatShaded: PD.BooleanParam;
|
|
57
77
|
};
|
|
@@ -77,6 +97,16 @@ export declare const SpacefillRepresentationProvider: StructureRepresentationPro
|
|
|
77
97
|
roughness: number;
|
|
78
98
|
bumpiness: number;
|
|
79
99
|
}>>;
|
|
100
|
+
clip: PD.Group<PD.Normalize<{
|
|
101
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
102
|
+
objects: PD.Normalize<{
|
|
103
|
+
type: any;
|
|
104
|
+
invert: any;
|
|
105
|
+
position: any;
|
|
106
|
+
rotation: any;
|
|
107
|
+
scale: any;
|
|
108
|
+
}>[];
|
|
109
|
+
}>>;
|
|
80
110
|
flipSided: PD.BooleanParam;
|
|
81
111
|
flatShaded: PD.BooleanParam;
|
|
82
112
|
}, "spacefill">;
|
|
@@ -60,6 +60,16 @@ export declare const UnitsMeshParams: {
|
|
|
60
60
|
roughness: number;
|
|
61
61
|
bumpiness: number;
|
|
62
62
|
}>>;
|
|
63
|
+
clip: PD.Group<PD.Normalize<{
|
|
64
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
65
|
+
objects: PD.Normalize<{
|
|
66
|
+
type: any;
|
|
67
|
+
invert: any;
|
|
68
|
+
position: any;
|
|
69
|
+
rotation: any;
|
|
70
|
+
scale: any;
|
|
71
|
+
}>[];
|
|
72
|
+
}>>;
|
|
63
73
|
};
|
|
64
74
|
export declare type UnitsMeshParams = typeof UnitsMeshParams;
|
|
65
75
|
export interface UnitsMeshVisualBuilder<P extends UnitsMeshParams> extends UnitsVisualBuilder<P, Mesh> {
|
|
@@ -81,6 +91,16 @@ export declare const UnitsSpheresParams: {
|
|
|
81
91
|
roughness: number;
|
|
82
92
|
bumpiness: number;
|
|
83
93
|
}>>;
|
|
94
|
+
clip: PD.Group<PD.Normalize<{
|
|
95
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
96
|
+
objects: PD.Normalize<{
|
|
97
|
+
type: any;
|
|
98
|
+
invert: any;
|
|
99
|
+
position: any;
|
|
100
|
+
rotation: any;
|
|
101
|
+
scale: any;
|
|
102
|
+
}>[];
|
|
103
|
+
}>>;
|
|
84
104
|
};
|
|
85
105
|
export declare type UnitsSpheresParams = typeof UnitsSpheresParams;
|
|
86
106
|
export interface UnitsSpheresVisualBuilder<P extends UnitsSpheresParams> extends UnitsVisualBuilder<P, Spheres> {
|
|
@@ -103,6 +123,16 @@ export declare const UnitsCylindersParams: {
|
|
|
103
123
|
roughness: number;
|
|
104
124
|
bumpiness: number;
|
|
105
125
|
}>>;
|
|
126
|
+
clip: PD.Group<PD.Normalize<{
|
|
127
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
128
|
+
objects: PD.Normalize<{
|
|
129
|
+
type: any;
|
|
130
|
+
invert: any;
|
|
131
|
+
position: any;
|
|
132
|
+
rotation: any;
|
|
133
|
+
scale: any;
|
|
134
|
+
}>[];
|
|
135
|
+
}>>;
|
|
106
136
|
};
|
|
107
137
|
export declare type UnitsCylindersParams = typeof UnitsCylindersParams;
|
|
108
138
|
export interface UnitsCylindersVisualBuilder<P extends UnitsCylindersParams> extends UnitsVisualBuilder<P, Cylinders> {
|
|
@@ -121,6 +151,16 @@ export declare const UnitsPointsParams: {
|
|
|
121
151
|
roughness: number;
|
|
122
152
|
bumpiness: number;
|
|
123
153
|
}>>;
|
|
154
|
+
clip: PD.Group<PD.Normalize<{
|
|
155
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
156
|
+
objects: PD.Normalize<{
|
|
157
|
+
type: any;
|
|
158
|
+
invert: any;
|
|
159
|
+
position: any;
|
|
160
|
+
rotation: any;
|
|
161
|
+
scale: any;
|
|
162
|
+
}>[];
|
|
163
|
+
}>>;
|
|
124
164
|
};
|
|
125
165
|
export declare type UnitsPointsParams = typeof UnitsPointsParams;
|
|
126
166
|
export interface UnitsPointVisualBuilder<P extends UnitsPointsParams> extends UnitsVisualBuilder<P, Points> {
|
|
@@ -138,6 +178,16 @@ export declare const UnitsLinesParams: {
|
|
|
138
178
|
roughness: number;
|
|
139
179
|
bumpiness: number;
|
|
140
180
|
}>>;
|
|
181
|
+
clip: PD.Group<PD.Normalize<{
|
|
182
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
183
|
+
objects: PD.Normalize<{
|
|
184
|
+
type: any;
|
|
185
|
+
invert: any;
|
|
186
|
+
position: any;
|
|
187
|
+
rotation: any;
|
|
188
|
+
scale: any;
|
|
189
|
+
}>[];
|
|
190
|
+
}>>;
|
|
141
191
|
};
|
|
142
192
|
export declare type UnitsLinesParams = typeof UnitsLinesParams;
|
|
143
193
|
export interface UnitsLinesVisualBuilder<P extends UnitsLinesParams> extends UnitsVisualBuilder<P, Lines> {
|
|
@@ -172,6 +222,16 @@ export declare const UnitsTextParams: {
|
|
|
172
222
|
roughness: number;
|
|
173
223
|
bumpiness: number;
|
|
174
224
|
}>>;
|
|
225
|
+
clip: PD.Group<PD.Normalize<{
|
|
226
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
227
|
+
objects: PD.Normalize<{
|
|
228
|
+
type: any;
|
|
229
|
+
invert: any;
|
|
230
|
+
position: any;
|
|
231
|
+
rotation: any;
|
|
232
|
+
scale: any;
|
|
233
|
+
}>[];
|
|
234
|
+
}>>;
|
|
175
235
|
};
|
|
176
236
|
export declare type UnitsTextParams = typeof UnitsTextParams;
|
|
177
237
|
export interface UnitsTextVisualBuilder<P extends UnitsTextParams> extends UnitsVisualBuilder<P, Text> {
|
|
@@ -210,6 +270,16 @@ export declare const UnitsDirectVolumeParams: {
|
|
|
210
270
|
roughness: number;
|
|
211
271
|
bumpiness: number;
|
|
212
272
|
}>>;
|
|
273
|
+
clip: PD.Group<PD.Normalize<{
|
|
274
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
275
|
+
objects: PD.Normalize<{
|
|
276
|
+
type: any;
|
|
277
|
+
invert: any;
|
|
278
|
+
position: any;
|
|
279
|
+
rotation: any;
|
|
280
|
+
scale: any;
|
|
281
|
+
}>[];
|
|
282
|
+
}>>;
|
|
213
283
|
};
|
|
214
284
|
export declare type UnitsDirectVolumeParams = typeof UnitsDirectVolumeParams;
|
|
215
285
|
export interface UnitsDirectVolumeVisualBuilder<P extends UnitsDirectVolumeParams> extends UnitsVisualBuilder<P, DirectVolume> {
|
|
@@ -232,6 +302,16 @@ export declare const UnitsTextureMeshParams: {
|
|
|
232
302
|
roughness: number;
|
|
233
303
|
bumpiness: number;
|
|
234
304
|
}>>;
|
|
305
|
+
clip: PD.Group<PD.Normalize<{
|
|
306
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
307
|
+
objects: PD.Normalize<{
|
|
308
|
+
type: any;
|
|
309
|
+
invert: any;
|
|
310
|
+
position: any;
|
|
311
|
+
rotation: any;
|
|
312
|
+
scale: any;
|
|
313
|
+
}>[];
|
|
314
|
+
}>>;
|
|
235
315
|
};
|
|
236
316
|
export declare type UnitsTextureMeshParams = typeof UnitsTextureMeshParams;
|
|
237
317
|
export interface UnitsTextureMeshVisualBuilder<P extends UnitsTextureMeshParams> extends UnitsVisualBuilder<P, TextureMesh> {
|
|
@@ -42,6 +42,16 @@ export declare const InterUnitBondCylinderParams: {
|
|
|
42
42
|
roughness: number;
|
|
43
43
|
bumpiness: number;
|
|
44
44
|
}>>;
|
|
45
|
+
clip: PD.Group<PD.Normalize<{
|
|
46
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
47
|
+
objects: PD.Normalize<{
|
|
48
|
+
type: any;
|
|
49
|
+
invert: any;
|
|
50
|
+
position: any;
|
|
51
|
+
rotation: any;
|
|
52
|
+
scale: any;
|
|
53
|
+
}>[];
|
|
54
|
+
}>>;
|
|
45
55
|
flipSided: PD.BooleanParam;
|
|
46
56
|
flatShaded: PD.BooleanParam;
|
|
47
57
|
};
|
|
@@ -81,6 +91,16 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
|
|
|
81
91
|
roughness: number;
|
|
82
92
|
bumpiness: number;
|
|
83
93
|
}>>;
|
|
94
|
+
clip: PD.Group<PD.Normalize<{
|
|
95
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
96
|
+
objects: PD.Normalize<{
|
|
97
|
+
type: any;
|
|
98
|
+
invert: any;
|
|
99
|
+
position: any;
|
|
100
|
+
rotation: any;
|
|
101
|
+
scale: any;
|
|
102
|
+
}>[];
|
|
103
|
+
}>>;
|
|
84
104
|
flipSided: PD.BooleanParam;
|
|
85
105
|
flatShaded: PD.BooleanParam;
|
|
86
106
|
}>;
|
|
@@ -26,6 +26,16 @@ export declare const InterUnitBondLineParams: {
|
|
|
26
26
|
roughness: number;
|
|
27
27
|
bumpiness: number;
|
|
28
28
|
}>>;
|
|
29
|
+
clip: PD.Group<PD.Normalize<{
|
|
30
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
31
|
+
objects: PD.Normalize<{
|
|
32
|
+
type: any;
|
|
33
|
+
invert: any;
|
|
34
|
+
position: any;
|
|
35
|
+
rotation: any;
|
|
36
|
+
scale: any;
|
|
37
|
+
}>[];
|
|
38
|
+
}>>;
|
|
29
39
|
};
|
|
30
40
|
export declare type InterUnitBondLineParams = typeof InterUnitBondLineParams;
|
|
31
41
|
export declare function InterUnitBondLineVisual(materialId: number): ComplexVisual<InterUnitBondLineParams>;
|
|
@@ -43,6 +43,16 @@ export declare const IntraUnitBondCylinderParams: {
|
|
|
43
43
|
roughness: number;
|
|
44
44
|
bumpiness: number;
|
|
45
45
|
}>>;
|
|
46
|
+
clip: PD.Group<PD.Normalize<{
|
|
47
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
48
|
+
objects: PD.Normalize<{
|
|
49
|
+
type: any;
|
|
50
|
+
invert: any;
|
|
51
|
+
position: any;
|
|
52
|
+
rotation: any;
|
|
53
|
+
scale: any;
|
|
54
|
+
}>[];
|
|
55
|
+
}>>;
|
|
46
56
|
flipSided: PD.BooleanParam;
|
|
47
57
|
flatShaded: PD.BooleanParam;
|
|
48
58
|
};
|
|
@@ -82,6 +92,16 @@ export declare function IntraUnitBondCylinderVisual(materialId: number, structur
|
|
|
82
92
|
roughness: number;
|
|
83
93
|
bumpiness: number;
|
|
84
94
|
}>>;
|
|
95
|
+
clip: PD.Group<PD.Normalize<{
|
|
96
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
97
|
+
objects: PD.Normalize<{
|
|
98
|
+
type: any;
|
|
99
|
+
invert: any;
|
|
100
|
+
position: any;
|
|
101
|
+
rotation: any;
|
|
102
|
+
scale: any;
|
|
103
|
+
}>[];
|
|
104
|
+
}>>;
|
|
85
105
|
flipSided: PD.BooleanParam;
|
|
86
106
|
flatShaded: PD.BooleanParam;
|
|
87
107
|
}>;
|
|
@@ -26,6 +26,16 @@ export declare const IntraUnitBondLineParams: {
|
|
|
26
26
|
roughness: number;
|
|
27
27
|
bumpiness: number;
|
|
28
28
|
}>>;
|
|
29
|
+
clip: PD.Group<PD.Normalize<{
|
|
30
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
31
|
+
objects: PD.Normalize<{
|
|
32
|
+
type: any;
|
|
33
|
+
invert: any;
|
|
34
|
+
position: any;
|
|
35
|
+
rotation: any;
|
|
36
|
+
scale: any;
|
|
37
|
+
}>[];
|
|
38
|
+
}>>;
|
|
29
39
|
};
|
|
30
40
|
export declare type IntraUnitBondLineParams = typeof IntraUnitBondLineParams;
|
|
31
41
|
export declare function IntraUnitBondLineVisual(materialId: number): UnitsVisual<IntraUnitBondLineParams>;
|
|
@@ -34,6 +34,16 @@ export declare const CarbohydrateLinkParams: {
|
|
|
34
34
|
roughness: number;
|
|
35
35
|
bumpiness: number;
|
|
36
36
|
}>>;
|
|
37
|
+
clip: PD.Group<PD.Normalize<{
|
|
38
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
39
|
+
objects: PD.Normalize<{
|
|
40
|
+
type: any;
|
|
41
|
+
invert: any;
|
|
42
|
+
position: any;
|
|
43
|
+
rotation: any;
|
|
44
|
+
scale: any;
|
|
45
|
+
}>[];
|
|
46
|
+
}>>;
|
|
37
47
|
};
|
|
38
48
|
export declare type CarbohydrateLinkParams = typeof CarbohydrateLinkParams;
|
|
39
49
|
export declare function CarbohydrateLinkVisual(materialId: number): ComplexVisual<CarbohydrateLinkParams>;
|
|
@@ -24,6 +24,16 @@ export declare const CarbohydrateSymbolParams: {
|
|
|
24
24
|
roughness: number;
|
|
25
25
|
bumpiness: number;
|
|
26
26
|
}>>;
|
|
27
|
+
clip: PD.Group<PD.Normalize<{
|
|
28
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
29
|
+
objects: PD.Normalize<{
|
|
30
|
+
type: any;
|
|
31
|
+
invert: any;
|
|
32
|
+
position: any;
|
|
33
|
+
rotation: any;
|
|
34
|
+
scale: any;
|
|
35
|
+
}>[];
|
|
36
|
+
}>>;
|
|
27
37
|
};
|
|
28
38
|
export declare type CarbohydrateSymbolParams = typeof CarbohydrateSymbolParams;
|
|
29
39
|
export declare function CarbohydrateSymbolVisual(materialId: number): ComplexVisual<CarbohydrateSymbolParams>;
|
|
@@ -34,6 +34,16 @@ export declare const CarbohydrateTerminalLinkParams: {
|
|
|
34
34
|
roughness: number;
|
|
35
35
|
bumpiness: number;
|
|
36
36
|
}>>;
|
|
37
|
+
clip: PD.Group<PD.Normalize<{
|
|
38
|
+
variant: import("../../../mol-util/clip").Clip.Variant;
|
|
39
|
+
objects: PD.Normalize<{
|
|
40
|
+
type: any;
|
|
41
|
+
invert: any;
|
|
42
|
+
position: any;
|
|
43
|
+
rotation: any;
|
|
44
|
+
scale: any;
|
|
45
|
+
}>[];
|
|
46
|
+
}>>;
|
|
37
47
|
};
|
|
38
48
|
export declare type CarbohydrateTerminalLinkParams = typeof CarbohydrateTerminalLinkParams;
|
|
39
49
|
export declare function CarbohydrateTerminalLinkVisual(materialId: number): ComplexVisual<CarbohydrateTerminalLinkParams>;
|