molstar 3.0.0-dev.5 → 3.0.0-dev.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (688) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +187 -187
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -95
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.d.ts +2 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +87 -74
  9. package/lib/apps/viewer/app.d.ts +230 -0
  10. package/lib/apps/viewer/app.js +515 -0
  11. package/lib/apps/viewer/embedded.html +43 -43
  12. package/lib/apps/viewer/index.d.ts +2 -403
  13. package/lib/apps/viewer/index.html +106 -95
  14. package/lib/apps/viewer/index.js +2 -420
  15. package/lib/cli/cifschema/index.d.ts +1 -1
  16. package/lib/cli/cifschema/index.js +15 -35
  17. package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
  18. package/lib/commonjs/apps/docking-viewer/index.js +86 -73
  19. package/lib/commonjs/apps/viewer/app.d.ts +230 -0
  20. package/lib/commonjs/apps/viewer/app.js +521 -0
  21. package/lib/commonjs/apps/viewer/index.d.ts +2 -403
  22. package/lib/commonjs/apps/viewer/index.js +2 -423
  23. package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
  24. package/lib/commonjs/cli/cifschema/index.js +15 -35
  25. package/lib/commonjs/examples/alpha-orbitals/index.js +3 -4
  26. package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
  27. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  28. package/lib/commonjs/examples/lighting/index.js +57 -41
  29. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
  30. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
  31. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
  32. package/lib/commonjs/extensions/anvil/behavior.d.ts +4 -0
  33. package/lib/commonjs/extensions/anvil/representation.d.ts +50 -0
  34. package/lib/commonjs/extensions/cellpack/representation.d.ts +10 -0
  35. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +30 -0
  36. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +4 -4
  37. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
  38. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
  39. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
  40. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
  41. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
  42. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
  43. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
  44. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
  45. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  46. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -2
  47. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
  48. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +10 -0
  49. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
  50. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +50 -0
  51. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +3 -9
  52. package/lib/commonjs/mol-canvas3d/canvas3d.js +34 -23
  53. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
  54. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +4 -0
  55. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  56. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +4 -0
  57. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  58. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  59. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +13 -1
  60. package/lib/commonjs/mol-canvas3d/passes/draw.js +16 -15
  61. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  62. package/lib/commonjs/mol-canvas3d/passes/image.js +3 -2
  63. package/lib/commonjs/mol-canvas3d/passes/marking.js +1 -1
  64. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +10 -2
  65. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +18 -14
  66. package/lib/commonjs/mol-canvas3d/passes/pick.js +12 -12
  67. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +3 -3
  68. package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
  69. package/lib/commonjs/mol-geo/geometry/base.d.ts +18 -0
  70. package/lib/commonjs/mol-geo/geometry/base.js +18 -1
  71. package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
  72. package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
  73. package/lib/commonjs/mol-geo/geometry/color-data.d.ts +1 -1
  74. package/lib/commonjs/mol-geo/geometry/color-data.js +22 -0
  75. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +12 -2
  76. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
  77. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +15 -38
  78. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +21 -66
  79. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
  80. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
  81. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +10 -0
  82. package/lib/commonjs/mol-geo/geometry/image/image.js +1 -1
  83. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +11 -0
  84. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  85. package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
  86. package/lib/commonjs/mol-geo/geometry/marker-data.js +13 -9
  87. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +10 -0
  88. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
  89. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +11 -1
  90. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  91. package/lib/commonjs/mol-geo/geometry/size-data.js +5 -5
  92. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +10 -0
  93. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
  94. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +10 -0
  95. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  96. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +10 -0
  97. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  98. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +2 -2
  99. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
  100. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -9
  101. package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
  102. package/lib/commonjs/mol-gl/render-object.js +10 -10
  103. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +11 -5
  104. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  105. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +15 -14
  106. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  107. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -4
  108. package/lib/commonjs/mol-gl/renderable/image.js +2 -2
  109. package/lib/commonjs/mol-gl/renderable/lines.d.ts +39 -33
  110. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  111. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +11 -5
  112. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  113. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -4
  114. package/lib/commonjs/mol-gl/renderable/points.js +2 -2
  115. package/lib/commonjs/mol-gl/renderable/schema.d.ts +10 -11
  116. package/lib/commonjs/mol-gl/renderable/schema.js +4 -10
  117. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +11 -5
  118. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  119. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -4
  120. package/lib/commonjs/mol-gl/renderable/text.js +2 -2
  121. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +11 -6
  122. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  123. package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
  124. package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
  125. package/lib/commonjs/mol-gl/renderer.js +23 -92
  126. package/lib/commonjs/mol-gl/scene.d.ts +2 -2
  127. package/lib/commonjs/mol-gl/scene.js +7 -5
  128. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  129. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  130. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  131. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  132. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
  133. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
  134. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
  135. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
  136. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  137. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  138. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
  139. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
  140. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
  141. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
  142. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  143. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  144. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  145. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  146. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  147. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  148. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
  149. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
  150. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  151. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  152. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  153. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  154. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  155. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  156. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  157. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  158. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  159. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  160. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.d.ts +1 -1
  161. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +1 -1
  162. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +1 -1
  163. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +1 -1
  164. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  165. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  166. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +1 -1
  167. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +1 -1
  168. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  169. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  170. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  171. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  172. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  173. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  174. package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
  175. package/lib/commonjs/mol-gl/shader-code.js +43 -14
  176. package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
  177. package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
  178. package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
  179. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
  180. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
  181. package/lib/commonjs/mol-io/reader/mol2/parser.d.ts +1 -1
  182. package/lib/commonjs/mol-io/reader/mol2/parser.js +33 -3
  183. package/lib/commonjs/mol-io/reader/mol2/schema.d.ts +12 -1
  184. package/lib/commonjs/mol-io/reader/mol2/schema.js +1 -1
  185. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +2 -2
  186. package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
  187. package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
  188. package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
  189. package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
  190. package/lib/commonjs/mol-model/structure/model/model.js +8 -2
  191. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
  192. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
  193. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
  194. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
  195. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
  196. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
  197. package/lib/commonjs/mol-model/structure/model/types.js +9 -0
  198. package/lib/commonjs/mol-model/structure/structure/element/stats.js +8 -0
  199. package/lib/commonjs/mol-model/structure/structure/unit/bonds/common.d.ts +2 -1
  200. package/lib/commonjs/mol-model/structure/structure/unit/bonds/common.js +11 -2
  201. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -1
  202. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +20 -10
  203. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.d.ts +1 -1
  204. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +21 -11
  205. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
  206. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +20 -0
  207. package/lib/commonjs/mol-model-formats/structure/mol2.d.ts +1 -1
  208. package/lib/commonjs/mol-model-formats/structure/mol2.js +37 -7
  209. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +18 -1
  210. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +18 -5
  211. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +10 -0
  212. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +10 -0
  213. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +30 -0
  214. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +40 -0
  215. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +4 -6
  216. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +11 -0
  217. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
  218. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  219. package/lib/commonjs/mol-plugin/commands.d.ts +1 -4
  220. package/lib/commonjs/mol-plugin/config.d.ts +2 -2
  221. package/lib/commonjs/mol-plugin/config.js +5 -25
  222. package/lib/commonjs/mol-plugin/features.d.ts +9 -0
  223. package/lib/commonjs/mol-plugin/features.js +38 -0
  224. package/lib/commonjs/mol-plugin/spec.js +1 -0
  225. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +12 -0
  226. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +8 -1
  227. package/lib/commonjs/mol-plugin-state/actions/structure.js +183 -72
  228. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
  229. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
  230. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
  231. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
  232. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
  233. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
  234. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
  235. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +13 -1
  236. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
  237. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +3 -1
  238. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +32 -0
  239. package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
  240. package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
  241. package/lib/commonjs/mol-plugin-ui/index.js +13 -16
  242. package/lib/commonjs/mol-plugin-ui/plugin.js +1 -1
  243. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -6
  244. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +10 -0
  245. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +10 -0
  246. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +10 -0
  247. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +10 -0
  248. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +10 -0
  249. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +10 -0
  250. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +10 -0
  251. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +10 -0
  252. package/lib/commonjs/mol-repr/structure/complex-representation.js +1 -1
  253. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +61 -19
  254. package/lib/commonjs/mol-repr/structure/params.d.ts +81 -19
  255. package/lib/commonjs/mol-repr/structure/registry.d.ts +141 -19
  256. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +30 -0
  257. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
  258. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
  259. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +30 -0
  260. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
  261. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
  262. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +1 -1
  263. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
  264. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +2 -7
  265. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +30 -0
  266. package/lib/commonjs/mol-repr/structure/representation/label.js +1 -1
  267. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +30 -0
  268. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
  269. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +1 -1
  270. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +30 -0
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  555. package/lib/mol-plugin-state/manager/structure/component.js +14 -9
  556. package/lib/mol-plugin-state/manager/structure/selection.js +3 -1
  557. package/lib/mol-plugin-state/transforms/representation.d.ts +32 -0
  558. package/lib/mol-plugin-state/transforms/representation.js +2 -2
  559. package/lib/mol-plugin-ui/index.d.ts +4 -4
  560. package/lib/mol-plugin-ui/index.js +11 -13
  561. package/lib/mol-plugin-ui/plugin.js +1 -1
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  581. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
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  586. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
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  588. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  589. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  590. package/lib/mol-plugin-ui/viewport/simple-settings.js +2 -6
  591. package/lib/mol-repr/shape/loci/angle.d.ts +10 -0
  592. package/lib/mol-repr/shape/loci/common.d.ts +10 -0
  593. package/lib/mol-repr/shape/loci/dihedral.d.ts +10 -0
  594. package/lib/mol-repr/shape/loci/distance.d.ts +10 -0
  595. package/lib/mol-repr/shape/loci/label.d.ts +10 -0
  596. package/lib/mol-repr/shape/loci/orientation.d.ts +10 -0
  597. package/lib/mol-repr/shape/loci/plane.d.ts +10 -0
  598. package/lib/mol-repr/shape/model/unitcell.d.ts +10 -0
  599. package/lib/mol-repr/structure/complex-representation.js +1 -1
  600. package/lib/mol-repr/structure/complex-visual.d.ts +61 -19
  601. package/lib/mol-repr/structure/params.d.ts +81 -19
  602. package/lib/mol-repr/structure/registry.d.ts +141 -19
  603. package/lib/mol-repr/structure/representation/backbone.d.ts +30 -0
  604. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
  605. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
  606. package/lib/mol-repr/structure/representation/cartoon.d.ts +30 -0
  607. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
  608. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
  609. package/lib/mol-repr/structure/representation/gaussian-surface.js +1 -1
  610. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
  611. package/lib/mol-repr/structure/representation/gaussian-volume.js +2 -7
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  615. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
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  617. package/lib/mol-repr/structure/representation/orientation.d.ts +30 -0
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  623. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
  624. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
  625. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
  626. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
  627. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
  628. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
  629. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
  630. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
  631. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
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  633. package/lib/mol-repr/structure/visual/element-point.d.ts +10 -0
  634. package/lib/mol-repr/structure/visual/element-sphere.d.ts +20 -0
  635. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
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  637. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
  638. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
  639. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
  640. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
  641. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
  642. package/lib/mol-repr/structure/visual/label-text.d.ts +10 -0
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  644. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
  645. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
  646. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
  647. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
  648. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
  649. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
  650. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
  651. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +20 -0
  652. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +20 -0
  653. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +10 -0
  654. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +10 -0
  655. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +10 -0
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  657. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +10 -0
  658. package/lib/mol-repr/structure/visual/util/bond.js +1 -1
  659. package/lib/mol-repr/structure/visual/util/common.d.ts +3 -2
  660. package/lib/mol-repr/structure/visual/util/common.js +2 -5
  661. package/lib/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
  662. package/lib/mol-repr/structure/visual/util/gaussian.js +12 -12
  663. package/lib/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
  664. package/lib/mol-repr/structure/visual/util/molecular-surface.js +4 -4
  665. package/lib/mol-repr/visual.js +11 -7
  666. package/lib/mol-repr/volume/direct-volume.d.ts +33 -57
  667. package/lib/mol-repr/volume/direct-volume.js +8 -12
  668. package/lib/mol-repr/volume/isosurface.d.ts +60 -0
  669. package/lib/mol-repr/volume/isosurface.js +11 -2
  670. package/lib/mol-repr/volume/registry.d.ts +31 -19
  671. package/lib/mol-repr/volume/representation.d.ts +10 -0
  672. package/lib/mol-repr/volume/slice.d.ts +30 -0
  673. package/lib/mol-repr/volume/slice.js +2 -2
  674. package/lib/mol-repr/volume/util.js +2 -2
  675. package/lib/mol-script/language/builder.d.ts +0 -1
  676. package/lib/mol-theme/clipping.d.ts +7 -15
  677. package/lib/mol-theme/clipping.js +5 -12
  678. package/lib/mol-theme/color/volume-value.d.ts +17 -0
  679. package/lib/mol-theme/color/volume-value.js +52 -0
  680. package/lib/mol-theme/color.d.ts +3 -0
  681. package/lib/mol-theme/color.js +2 -0
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  683. package/lib/mol-util/clip.js +93 -0
  684. package/lib/mol-util/number-packing.d.ts +11 -0
  685. package/lib/mol-util/{float-packing.js → number-packing.js} +7 -14
  686. package/package.json +162 -162
  687. package/lib/commonjs/mol-util/float-packing.d.ts +0 -15
  688. package/lib/mol-util/float-packing.d.ts +0 -15
@@ -1,411 +1,10 @@
1
1
  /**
2
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
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3
  *
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4
  * @author David Sehnal <david.sehnal@gmail.com>
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  * @author Alexander Rose <alexander.rose@weirdbyte.de>
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  */
7
- import { PresetTrajectoryHierarchy } from '../../mol-plugin-state/builder/structure/hierarchy-preset';
8
- import { StructureRepresentationPresetProvider } from '../../mol-plugin-state/builder/structure/representation-preset';
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- import { DataFormatProvider } from '../../mol-plugin-state/formats/provider';
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- import { BuildInStructureFormat } from '../../mol-plugin-state/formats/structure';
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- import { BuiltInTrajectoryFormat } from '../../mol-plugin-state/formats/trajectory';
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- import { BuildInVolumeFormat } from '../../mol-plugin-state/formats/volume';
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- import { PluginStateObject } from '../../mol-plugin-state/objects';
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- import { PluginUIContext } from '../../mol-plugin-ui/context';
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- import { PluginLayoutControlsDisplay } from '../../mol-plugin/layout';
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- import { PluginState } from '../../mol-plugin/state';
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- import { StateObjectSelector } from '../../mol-state';
18
- import { Color } from '../../mol-util/color';
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- import '../../mol-util/polyfill';
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7
  import './embedded.html';
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8
  import './favicon.ico';
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  import './index.html';
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- export { PLUGIN_VERSION as version } from '../../mol-plugin/version';
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- export { setDebugMode, setProductionMode } from '../../mol-util/debug';
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- declare const DefaultViewerOptions: {
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- customFormats: [string, DataFormatProvider<any, any, any>][];
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- extensions: ("cellpack" | "g3d" | "geo-export" | "mp4-export" | "pdbe-structure-quality-report" | "dnatco-confal-pyramids" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation")[];
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- layoutIsExpanded: boolean;
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- layoutShowControls: boolean;
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- layoutShowRemoteState: boolean;
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- layoutControlsDisplay: PluginLayoutControlsDisplay;
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- layoutShowSequence: boolean;
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- layoutShowLog: boolean;
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- layoutShowLeftPanel: boolean;
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- collapseLeftPanel: boolean;
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- collapseRightPanel: boolean;
37
- disableAntialiasing: boolean | undefined;
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- pixelScale: number | undefined;
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- pickScale: number | undefined;
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- pickPadding: number | undefined;
41
- enableWboit: boolean | undefined;
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- viewportShowExpand: boolean | undefined;
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- viewportShowControls: boolean | undefined;
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- viewportShowSettings: boolean | undefined;
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- viewportShowSelectionMode: boolean | undefined;
46
- viewportShowAnimation: boolean | undefined;
47
- pluginStateServer: string | undefined;
48
- volumeStreamingServer: string | undefined;
49
- volumeStreamingDisabled: boolean;
50
- pdbProvider: "rcsb" | "pdbe" | undefined;
51
- emdbProvider: import("../../mol-plugin-state/actions/volume").EmdbDownloadProvider | undefined;
52
- };
53
- declare type ViewerOptions = typeof DefaultViewerOptions;
54
- export declare class Viewer {
55
- plugin: PluginUIContext;
56
- constructor(elementOrId: string | HTMLElement, options?: Partial<ViewerOptions>);
57
- setRemoteSnapshot(id: string): Promise<void>;
58
- loadSnapshotFromUrl(url: string, type: PluginState.SnapshotType): Promise<void>;
59
- loadStructureFromUrl(url: string, format?: BuiltInTrajectoryFormat, isBinary?: boolean, options?: LoadStructureOptions): Promise<void>;
60
- loadAllModelsOrAssemblyFromUrl(url: string, format?: BuiltInTrajectoryFormat, isBinary?: boolean, options?: LoadStructureOptions): Promise<void>;
61
- loadStructureFromData(data: string | number[], format: BuiltInTrajectoryFormat, options?: {
62
- dataLabel?: string;
63
- }): Promise<void>;
64
- loadPdb(pdb: string, options?: LoadStructureOptions): Promise<void>;
65
- loadPdbDev(pdbDev: string): Promise<void>;
66
- loadEmdb(emdb: string, options?: {
67
- detail?: number;
68
- }): Promise<void>;
69
- /**
70
- * @example Load X-ray density from volume server
71
- viewer.loadVolumeFromUrl({
72
- url: 'https://www.ebi.ac.uk/pdbe/densities/x-ray/1tqn/cell?detail=3',
73
- format: 'dscif',
74
- isBinary: true
75
- }, [{
76
- type: 'relative',
77
- value: 1.5,
78
- color: 0x3362B2
79
- }, {
80
- type: 'relative',
81
- value: 3,
82
- color: 0x33BB33,
83
- volumeIndex: 1
84
- }, {
85
- type: 'relative',
86
- value: -3,
87
- color: 0xBB3333,
88
- volumeIndex: 1
89
- }], {
90
- entryId: ['2FO-FC', 'FO-FC'],
91
- isLazy: true
92
- });
93
- * *********************
94
- * @example Load EM density from volume server
95
- viewer.loadVolumeFromUrl({
96
- url: 'https://maps.rcsb.org/em/emd-30210/cell?detail=6',
97
- format: 'dscif',
98
- isBinary: true
99
- }, [{
100
- type: 'relative',
101
- value: 1,
102
- color: 0x3377aa
103
- }], {
104
- entryId: 'EMD-30210',
105
- isLazy: true
106
- });
107
- */
108
- loadVolumeFromUrl({ url, format, isBinary }: {
109
- url: string;
110
- format: BuildInVolumeFormat;
111
- isBinary: boolean;
112
- }, isovalues: VolumeIsovalueInfo[], options?: {
113
- entryId?: string | string[];
114
- isLazy?: boolean;
115
- }): Promise<void>;
116
- /**
117
- * @example
118
- * viewer.loadTrajectory({
119
- * model: { kind: 'model-url', url: 'villin.gro', format: 'gro' },
120
- * coordinates: { kind: 'coordinates-url', url: 'villin.xtc', format: 'xtc', isBinary: true },
121
- * preset: 'all-models' // or 'default'
122
- * });
123
- */
124
- loadTrajectory(params: LoadTrajectoryParams): Promise<{
125
- model: StateObjectSelector<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
126
- coords: StateObjectSelector<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
127
- preset: {
128
- model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
129
- modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
130
- unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
131
- structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
132
- structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
133
- representation: {} | {
134
- components?: undefined;
135
- representations?: undefined;
136
- } | {
137
- components: {
138
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
139
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
140
- };
141
- representations: {
142
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
143
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
144
- };
145
- } | {
146
- components?: undefined;
147
- representations?: undefined;
148
- } | {
149
- components: {
150
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
151
- };
152
- representations: {
153
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
154
- };
155
- } | {
156
- components?: undefined;
157
- representations?: undefined;
158
- } | {
159
- components: {
160
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
161
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
162
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
163
- branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
164
- water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
165
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
166
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
167
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
168
- };
169
- representations: {
170
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
171
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
172
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
173
- branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
174
- branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
175
- water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
176
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
177
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
178
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
179
- };
180
- } | {
181
- components?: undefined;
182
- representations?: undefined;
183
- } | {
184
- components: {
185
- all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
186
- branched: undefined;
187
- };
188
- representations: {
189
- all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
190
- };
191
- } | {
192
- components?: undefined;
193
- representations?: undefined;
194
- } | {
195
- components: {
196
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
197
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
198
- };
199
- representations: {
200
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
201
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
202
- };
203
- } | undefined;
204
- } | {
205
- models?: undefined;
206
- structures?: undefined;
207
- } | {
208
- models: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>[];
209
- structures: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>[];
210
- } | {
211
- model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
212
- modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
213
- unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
214
- structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
215
- structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
216
- representation: {} | {
217
- components?: undefined;
218
- representations?: undefined;
219
- } | {
220
- components: {
221
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
222
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
223
- };
224
- representations: {
225
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
226
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
227
- };
228
- } | {
229
- components?: undefined;
230
- representations?: undefined;
231
- } | {
232
- components: {
233
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
234
- };
235
- representations: {
236
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
237
- };
238
- } | {
239
- components?: undefined;
240
- representations?: undefined;
241
- } | {
242
- components: {
243
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
244
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
245
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
246
- branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
247
- water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
248
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
249
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
250
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
251
- };
252
- representations: {
253
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
254
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
255
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
256
- branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
257
- branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
258
- water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
259
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
260
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
261
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
262
- };
263
- } | {
264
- components?: undefined;
265
- representations?: undefined;
266
- } | {
267
- components: {
268
- all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
269
- branched: undefined;
270
- };
271
- representations: {
272
- all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
273
- };
274
- } | {
275
- components?: undefined;
276
- representations?: undefined;
277
- } | {
278
- components: {
279
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
280
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
281
- };
282
- representations: {
283
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
284
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
285
- };
286
- } | undefined;
287
- } | {
288
- model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
289
- modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
290
- unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
291
- structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
292
- structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
293
- representation: {} | {
294
- components?: undefined;
295
- representations?: undefined;
296
- } | {
297
- components: {
298
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
299
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
300
- };
301
- representations: {
302
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
303
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
304
- };
305
- } | {
306
- components?: undefined;
307
- representations?: undefined;
308
- } | {
309
- components: {
310
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
311
- };
312
- representations: {
313
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
314
- };
315
- } | {
316
- components?: undefined;
317
- representations?: undefined;
318
- } | {
319
- components: {
320
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
321
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
322
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
323
- branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
324
- water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
325
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
326
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
327
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
328
- };
329
- representations: {
330
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
331
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
332
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
333
- branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
334
- branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
335
- water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
336
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
337
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
338
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
339
- };
340
- } | {
341
- components?: undefined;
342
- representations?: undefined;
343
- } | {
344
- components: {
345
- all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
346
- branched: undefined;
347
- };
348
- representations: {
349
- all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
350
- };
351
- } | {
352
- components?: undefined;
353
- representations?: undefined;
354
- } | {
355
- components: {
356
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
357
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
358
- };
359
- representations: {
360
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
361
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
362
- };
363
- } | undefined;
364
- } | undefined;
365
- }>;
366
- handleResize(): void;
367
- }
368
- export interface LoadStructureOptions {
369
- representationParams?: StructureRepresentationPresetProvider.CommonParams;
370
- }
371
- export interface VolumeIsovalueInfo {
372
- type: 'absolute' | 'relative';
373
- value: number;
374
- color: Color;
375
- alpha?: number;
376
- volumeIndex?: number;
377
- }
378
- export interface LoadTrajectoryParams {
379
- model: {
380
- kind: 'model-url';
381
- url: string;
382
- format?: BuiltInTrajectoryFormat;
383
- isBinary?: boolean;
384
- } | {
385
- kind: 'model-data';
386
- data: string | number[] | ArrayBuffer | Uint8Array;
387
- format?: BuiltInTrajectoryFormat;
388
- } | {
389
- kind: 'topology-url';
390
- url: string;
391
- format: BuildInStructureFormat;
392
- isBinary?: boolean;
393
- } | {
394
- kind: 'topology-data';
395
- data: string | number[] | ArrayBuffer | Uint8Array;
396
- format: BuildInStructureFormat;
397
- };
398
- modelLabel?: string;
399
- coordinates: {
400
- kind: 'coordinates-url';
401
- url: string;
402
- format: BuildInStructureFormat;
403
- isBinary?: boolean;
404
- } | {
405
- kind: 'coordinates-data';
406
- data: string | number[] | ArrayBuffer | Uint8Array;
407
- format: BuildInStructureFormat;
408
- };
409
- coordinatesLabel?: string;
410
- preset?: keyof PresetTrajectoryHierarchy;
411
- }
10
+ export * from './app';