molstar 3.0.0-dev.2 → 3.0.0-dev.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (493) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +187 -187
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +102 -94
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.d.ts +2 -1
  8. package/lib/apps/docking-viewer/index.html +36 -36
  9. package/lib/apps/docking-viewer/index.js +87 -74
  10. package/lib/apps/docking-viewer/viewport.js +2 -1
  11. package/lib/apps/viewer/embedded.html +43 -43
  12. package/lib/apps/viewer/index.d.ts +36 -215
  13. package/lib/apps/viewer/index.html +102 -94
  14. package/lib/apps/viewer/index.js +139 -52
  15. package/lib/cli/cifschema/index.d.ts +1 -1
  16. package/lib/cli/cifschema/index.js +15 -35
  17. package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
  18. package/lib/commonjs/apps/docking-viewer/index.js +86 -73
  19. package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
  20. package/lib/commonjs/apps/viewer/index.d.ts +36 -215
  21. package/lib/commonjs/apps/viewer/index.js +139 -52
  22. package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
  23. package/lib/commonjs/cli/cifschema/index.js +15 -35
  24. package/lib/commonjs/examples/alpha-orbitals/index.js +2 -3
  25. package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
  26. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  27. package/lib/commonjs/examples/lighting/index.js +58 -41
  28. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
  29. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
  30. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
  31. package/lib/commonjs/extensions/anvil/behavior.d.ts +3 -0
  32. package/lib/commonjs/extensions/anvil/representation.d.ts +13 -0
  33. package/lib/commonjs/extensions/cellpack/representation.d.ts +3 -0
  34. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +9 -0
  35. package/lib/commonjs/extensions/geo-export/obj-exporter.js +1 -1
  36. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +1 -1
  37. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
  38. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
  39. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
  40. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
  41. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
  42. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
  43. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
  44. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
  45. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
  46. package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
  47. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  48. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +3 -0
  49. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
  50. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +3 -0
  51. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
  52. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
  53. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +6 -0
  54. package/lib/commonjs/mol-canvas3d/canvas3d.js +10 -3
  55. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +3 -0
  56. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +3 -0
  57. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +4 -0
  58. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +3 -0
  59. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
  60. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -2
  61. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  62. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +4 -2
  63. package/lib/commonjs/mol-geo/geometry/base.d.ts +2 -0
  64. package/lib/commonjs/mol-geo/geometry/base.js +2 -0
  65. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +4 -1
  66. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -2
  67. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
  68. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -0
  69. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +2 -0
  70. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +1 -1
  71. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +3 -0
  72. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +4 -2
  73. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -0
  74. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +3 -0
  75. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +4 -2
  76. package/lib/commonjs/mol-geo/geometry/substance-data.js +3 -3
  77. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -0
  78. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +3 -3
  79. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -0
  80. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -2
  81. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +31 -28
  82. package/lib/commonjs/mol-gl/renderable/cylinders.js +2 -2
  83. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +1 -0
  84. package/lib/commonjs/mol-gl/renderable/image.d.ts +1 -0
  85. package/lib/commonjs/mol-gl/renderable/lines.d.ts +1 -0
  86. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +28 -25
  87. package/lib/commonjs/mol-gl/renderable/mesh.js +2 -2
  88. package/lib/commonjs/mol-gl/renderable/points.d.ts +1 -0
  89. package/lib/commonjs/mol-gl/renderable/schema.d.ts +1 -0
  90. package/lib/commonjs/mol-gl/renderable/schema.js +3 -3
  91. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +31 -28
  92. package/lib/commonjs/mol-gl/renderable/spheres.js +2 -2
  93. package/lib/commonjs/mol-gl/renderable/text.d.ts +1 -0
  94. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +3 -0
  95. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
  96. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  97. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  98. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  99. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  100. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  101. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  102. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  103. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  104. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  105. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  106. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  107. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  108. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  109. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  110. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +1 -1
  111. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +1 -1
  112. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  113. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  114. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  115. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  116. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  117. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  118. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  119. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  120. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  121. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  122. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
  123. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
  124. package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
  125. package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
  126. package/lib/commonjs/mol-model/structure/model/model.js +15 -5
  127. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
  128. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
  129. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
  130. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
  131. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
  132. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
  133. package/lib/commonjs/mol-model/structure/model/types.js +9 -0
  134. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
  135. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +6 -0
  136. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +3 -0
  137. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +3 -0
  138. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +9 -0
  139. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +12 -0
  140. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -0
  141. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  142. package/lib/commonjs/mol-plugin/commands.d.ts +3 -0
  143. package/lib/commonjs/mol-plugin/config.d.ts +2 -0
  144. package/lib/commonjs/mol-plugin/config.js +10 -3
  145. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +9 -0
  146. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +7 -1
  147. package/lib/commonjs/mol-plugin-state/actions/structure.js +150 -72
  148. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
  149. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
  150. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
  151. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
  152. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +2 -0
  153. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +1 -1
  154. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +22 -0
  155. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +3 -2
  156. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +11 -6
  157. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
  158. package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +8 -17
  159. package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
  160. package/lib/commonjs/mol-plugin-ui/index.js +13 -16
  161. package/lib/commonjs/mol-plugin-ui/plugin.d.ts +1 -1
  162. package/lib/commonjs/mol-plugin-ui/plugin.js +76 -10
  163. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +3 -0
  164. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +1 -0
  165. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +3 -0
  166. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +1 -0
  167. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +1 -0
  168. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +3 -0
  169. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +3 -0
  170. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +3 -0
  171. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +12 -0
  172. package/lib/commonjs/mol-repr/structure/params.d.ts +16 -0
  173. package/lib/commonjs/mol-repr/structure/registry.d.ts +35 -1
  174. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +9 -0
  175. package/lib/commonjs/mol-repr/structure/representation/backbone.js +2 -1
  176. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +9 -0
  177. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +2 -1
  178. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
  179. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.js +2 -1
  180. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +9 -0
  181. package/lib/commonjs/mol-repr/structure/representation/cartoon.js +2 -1
  182. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +9 -0
  183. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +2 -1
  184. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +9 -0
  185. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +2 -1
  186. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  187. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +6 -3
  188. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
  189. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +9 -0
  190. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +2 -1
  191. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +9 -0
  192. package/lib/commonjs/mol-repr/structure/representation/orientation.js +2 -1
  193. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
  194. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +9 -0
  195. package/lib/commonjs/mol-repr/structure/representation/putty.js +2 -1
  196. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +9 -0
  197. package/lib/commonjs/mol-repr/structure/representation/spacefill.js +2 -1
  198. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +16 -0
  199. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +6 -0
  200. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  201. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +6 -0
  202. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
  203. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  204. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
  205. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
  206. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +3 -0
  207. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
  208. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
  209. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
  210. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +6 -0
  211. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +3 -0
  212. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  213. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +12 -0
  214. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  215. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +3 -2
  216. package/lib/commonjs/mol-repr/structure/visual/label-text.js +2 -2
  217. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +3 -0
  218. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  219. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +3 -0
  220. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +3 -0
  221. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +3 -0
  222. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +6 -0
  223. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +6 -0
  224. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +3 -0
  225. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +3 -0
  226. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +3 -0
  227. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
  228. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +3 -0
  229. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -1
  230. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +3 -0
  231. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +16 -0
  232. package/lib/commonjs/mol-repr/volume/isosurface.js +2 -1
  233. package/lib/commonjs/mol-repr/volume/registry.d.ts +5 -0
  234. package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -0
  235. package/lib/commonjs/mol-repr/volume/slice.d.ts +3 -0
  236. package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
  237. package/lib/commonjs/mol-theme/color/illustrative.d.ts +2 -0
  238. package/lib/commonjs/mol-theme/color/illustrative.js +2 -2
  239. package/lib/commonjs/mol-theme/color.d.ts +1 -0
  240. package/lib/commonjs/mol-util/material.d.ts +5 -1
  241. package/lib/commonjs/mol-util/material.js +9 -7
  242. package/lib/examples/alpha-orbitals/index.html +61 -60
  243. package/lib/examples/alpha-orbitals/index.js +3 -4
  244. package/lib/examples/basic-wrapper/index.html +137 -136
  245. package/lib/examples/basic-wrapper/index.js +24 -12
  246. package/lib/examples/lighting/index.d.ts +1 -1
  247. package/lib/examples/lighting/index.html +88 -86
  248. package/lib/examples/lighting/index.js +59 -42
  249. package/lib/examples/proteopedia-wrapper/index.html +236 -235
  250. package/lib/examples/proteopedia-wrapper/index.js +27 -15
  251. package/lib/extensions/alpha-orbitals/transforms.d.ts +0 -1
  252. package/lib/extensions/alpha-orbitals/transforms.js +1 -14
  253. package/lib/extensions/anvil/behavior.d.ts +3 -0
  254. package/lib/extensions/anvil/representation.d.ts +13 -0
  255. package/lib/extensions/cellpack/representation.d.ts +3 -0
  256. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +9 -0
  257. package/lib/extensions/geo-export/obj-exporter.js +1 -1
  258. package/lib/extensions/geo-export/usdz-exporter.js +1 -1
  259. package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
  260. package/lib/extensions/model-archive/quality-assessment/behavior.js +233 -0
  261. package/lib/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
  262. package/lib/extensions/model-archive/quality-assessment/color/plddt.js +120 -0
  263. package/lib/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
  264. package/lib/extensions/model-archive/quality-assessment/color/qmean.js +106 -0
  265. package/lib/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
  266. package/lib/extensions/model-archive/quality-assessment/prop.js +127 -0
  267. package/lib/extensions/mp4-export/controls.d.ts +1 -0
  268. package/lib/extensions/mp4-export/controls.js +9 -7
  269. package/lib/extensions/pdbe/structure-quality-report/prop.js +1 -1
  270. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +3 -0
  271. package/lib/extensions/rcsb/assembly-symmetry/prop.js +1 -1
  272. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +3 -0
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  275. package/lib/mol-canvas3d/canvas3d.d.ts +6 -0
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  474. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +6 -0
  475. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +3 -0
  476. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +3 -0
  477. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +3 -0
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  479. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +3 -0
  480. package/lib/mol-repr/structure/visual/util/bond.js +1 -1
  481. package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
  482. package/lib/mol-repr/volume/isosurface.d.ts +16 -0
  483. package/lib/mol-repr/volume/isosurface.js +2 -1
  484. package/lib/mol-repr/volume/registry.d.ts +5 -0
  485. package/lib/mol-repr/volume/representation.d.ts +1 -0
  486. package/lib/mol-repr/volume/slice.d.ts +3 -0
  487. package/lib/mol-script/language/builder.d.ts +0 -1
  488. package/lib/mol-theme/color/illustrative.d.ts +2 -0
  489. package/lib/mol-theme/color/illustrative.js +2 -2
  490. package/lib/mol-theme/color.d.ts +1 -0
  491. package/lib/mol-util/material.d.ts +5 -1
  492. package/lib/mol-util/material.js +9 -7
  493. package/package.json +162 -160
@@ -24,7 +24,7 @@ export { PLUGIN_VERSION as version } from '../../mol-plugin/version';
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  export { setDebugMode, setProductionMode } from '../../mol-util/debug';
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  declare const DefaultViewerOptions: {
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  customFormats: [string, DataFormatProvider<any, any, any>][];
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- extensions: ("cellpack" | "g3d" | "geo-export" | "mp4-export" | "pdbe-structure-quality-report" | "dnatco-confal-pyramids" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation")[];
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+ extensions: ("cellpack" | "g3d" | "geo-export" | "mp4-export" | "pdbe-structure-quality-report" | "dnatco-confal-pyramids" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation" | "ma-quality-assessment")[];
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  layoutIsExpanded: boolean;
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  layoutShowControls: boolean;
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  layoutShowRemoteState: boolean;
@@ -53,7 +53,8 @@ declare const DefaultViewerOptions: {
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  declare type ViewerOptions = typeof DefaultViewerOptions;
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  export declare class Viewer {
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  plugin: PluginUIContext;
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- constructor(elementOrId: string | HTMLElement, options?: Partial<ViewerOptions>);
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+ constructor(plugin: PluginUIContext);
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+ static create(elementOrId: string | HTMLElement, options?: Partial<ViewerOptions>): Promise<Viewer>;
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  setRemoteSnapshot(id: string): Promise<void>;
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  loadSnapshotFromUrl(url: string, type: PluginState.SnapshotType): Promise<void>;
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  loadStructureFromUrl(url: string, format?: BuiltInTrajectoryFormat, isBinary?: boolean, options?: LoadStructureOptions): Promise<void>;
@@ -66,6 +67,8 @@ export declare class Viewer {
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  loadEmdb(emdb: string, options?: {
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  detail?: number;
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  }): Promise<void>;
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+ loadAlphaFoldDb(afdb: string): Promise<void>;
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+ loadModelArchive(id: string): Promise<void>;
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  /**
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  * @example Load X-ray density from volume server
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  viewer.loadVolumeFromUrl({
@@ -130,77 +133,7 @@ export declare class Viewer {
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  unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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  structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
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  structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
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- representation: {} | {
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- components?: undefined;
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- representations?: undefined;
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- } | {
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- components: {
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- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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- };
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- representations: {
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- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
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- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
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- };
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- } | {
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- components?: undefined;
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- } | {
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- components: {
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- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
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- };
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- representations: {
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- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
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- };
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- } | {
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- components: {
160
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
161
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
162
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
163
- branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
164
- water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
165
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
166
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
167
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
168
- };
169
- representations: {
170
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
171
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
172
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
173
- branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
174
- branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
175
- water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
176
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
177
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
178
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
179
- };
180
- } | {
181
- components?: undefined;
182
- representations?: undefined;
183
- } | {
184
- components: {
185
- all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
186
- branched: undefined;
187
- };
188
- representations: {
189
- all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
190
- };
191
- } | {
192
- components?: undefined;
193
- representations?: undefined;
194
- } | {
195
- components: {
196
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
197
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
198
- };
199
- representations: {
200
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
201
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
202
- };
203
- } | undefined;
136
+ representation: any;
204
137
  } | {
205
138
  models?: undefined;
206
139
  structures?: undefined;
@@ -213,154 +146,14 @@ export declare class Viewer {
213
146
  unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
214
147
  structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
215
148
  structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
216
- representation: {} | {
217
- components?: undefined;
218
- representations?: undefined;
219
- } | {
220
- components: {
221
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
222
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
223
- };
224
- representations: {
225
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
226
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
227
- };
228
- } | {
229
- components?: undefined;
230
- representations?: undefined;
231
- } | {
232
- components: {
233
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
234
- };
235
- representations: {
236
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
237
- };
238
- } | {
239
- components?: undefined;
240
- representations?: undefined;
241
- } | {
242
- components: {
243
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
244
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
245
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
246
- branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
247
- water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
248
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
249
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
250
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
251
- };
252
- representations: {
253
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
254
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
255
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
256
- branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
257
- branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
258
- water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
259
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
260
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
261
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
262
- };
263
- } | {
264
- components?: undefined;
265
- representations?: undefined;
266
- } | {
267
- components: {
268
- all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
269
- branched: undefined;
270
- };
271
- representations: {
272
- all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
273
- };
274
- } | {
275
- components?: undefined;
276
- representations?: undefined;
277
- } | {
278
- components: {
279
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
280
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
281
- };
282
- representations: {
283
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
284
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
285
- };
286
- } | undefined;
149
+ representation: any;
287
150
  } | {
288
151
  model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
289
152
  modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
290
153
  unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
291
154
  structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
292
155
  structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
293
- representation: {} | {
294
- components?: undefined;
295
- representations?: undefined;
296
- } | {
297
- components: {
298
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
299
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
300
- };
301
- representations: {
302
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
303
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
304
- };
305
- } | {
306
- components?: undefined;
307
- representations?: undefined;
308
- } | {
309
- components: {
310
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
311
- };
312
- representations: {
313
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
314
- };
315
- } | {
316
- components?: undefined;
317
- representations?: undefined;
318
- } | {
319
- components: {
320
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
321
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
322
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
323
- branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
324
- water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
325
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
326
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
327
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
328
- };
329
- representations: {
330
- polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
331
- ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
332
- nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
333
- branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
334
- branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
335
- water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
336
- ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
337
- lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
338
- coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
339
- };
340
- } | {
341
- components?: undefined;
342
- representations?: undefined;
343
- } | {
344
- components: {
345
- all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
346
- branched: undefined;
347
- };
348
- representations: {
349
- all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
350
- };
351
- } | {
352
- components?: undefined;
353
- representations?: undefined;
354
- } | {
355
- components: {
356
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
357
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
358
- };
359
- representations: {
360
- protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
361
- nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
362
- };
363
- } | undefined;
156
+ representation: any;
364
157
  } | undefined;
365
158
  }>;
366
159
  handleResize(): void;
@@ -409,3 +202,31 @@ export interface LoadTrajectoryParams {
409
202
  coordinatesLabel?: string;
410
203
  preset?: keyof PresetTrajectoryHierarchy;
411
204
  }
205
+ export declare const ViewerAutoPreset: StructureRepresentationPresetProvider<{
206
+ ignoreHydrogens: boolean | undefined;
207
+ quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined;
208
+ theme: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
209
+ globalName: any;
210
+ carbonColor: any;
211
+ symmetryColor: any;
212
+ focus: any;
213
+ }> | undefined;
214
+ }, {
215
+ components?: undefined;
216
+ representations?: undefined;
217
+ } | {
218
+ components: {
219
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
220
+ };
221
+ representations: {
222
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
223
+ };
224
+ } | {
225
+ components: {
226
+ all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
227
+ branched: undefined;
228
+ };
229
+ representations: {
230
+ all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
231
+ };
232
+ }>;
@@ -1,95 +1,103 @@
1
- <!DOCTYPE html>
2
- <html lang="en">
3
- <head>
4
- <meta charset="utf-8" />
5
- <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
- <link rel="icon" href="./favicon.ico" type="image/x-icon">
7
- <title>Mol* Viewer</title>
8
- <style>
9
- * {
10
- margin: 0;
11
- padding: 0;
12
- box-sizing: border-box;
13
- }
14
- html, body {
15
- width: 100%;
16
- height: 100%;
17
- overflow: hidden;
18
- }
19
- hr {
20
- margin: 10px;
21
- }
22
- h1, h2, h3, h4, h5 {
23
- margin-top: 5px;
24
- margin-bottom: 3px;
25
- }
26
- button {
27
- padding: 2px;
28
- }
29
- #app {
30
- position: absolute;
31
- left: 100px;
32
- top: 100px;
33
- width: 800px;
34
- height: 600px;
35
- }
36
- </style>
37
- <link rel="stylesheet" type="text/css" href="molstar.css" />
38
- </head>
39
- <body>
40
- <div id="app"></div>
41
- <script type="text/javascript" src="./molstar.js"></script>
42
- <script type="text/javascript">
43
- function getParam(name, regex) {
44
- var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
45
- return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
46
- }
47
-
48
- var debugMode = getParam('debug-mode', '[^&]+').trim() === '1';
49
- if (debugMode) molstar.setDebugMode(debugMode, debugMode);
50
-
51
- var hideControls = getParam('hide-controls', '[^&]+').trim() === '1';
52
- var collapseLeftPanel = getParam('collapse-left-panel', '[^&]+').trim() === '1';
53
- var pdbProvider = getParam('pdb-provider', '[^&]+').trim().toLowerCase();
54
- var emdbProvider = getParam('emdb-provider', '[^&]+').trim().toLowerCase();
55
- var mapProvider = getParam('map-provider', '[^&]+').trim().toLowerCase();
56
- var pixelScale = getParam('pixel-scale', '[^&]+').trim();
57
- var pickScale = getParam('pick-scale', '[^&]+').trim();
58
- var pickPadding = getParam('pick-padding', '[^&]+').trim();
59
- var viewer = new molstar.Viewer('app', {
60
- layoutShowControls: !hideControls,
61
- viewportShowExpand: false,
62
- collapseLeftPanel: collapseLeftPanel,
63
- pdbProvider: pdbProvider || 'pdbe',
64
- emdbProvider: emdbProvider || 'pdbe',
65
- volumeStreamingServer: (mapProvider || 'pdbe') === 'rcsb'
66
- ? 'https://maps.rcsb.org'
67
- : 'https://www.ebi.ac.uk/pdbe/densities',
68
- pixelScale: parseFloat(pixelScale) || 1,
69
- pickScale: parseFloat(pickScale) || 0.25,
70
- pickPadding: isNaN(parseFloat(pickPadding)) ? 1 : parseFloat(pickPadding),
71
- });
72
-
73
- var snapshotId = getParam('snapshot-id', '[^&]+').trim();
74
- if (snapshotId) viewer.setRemoteSnapshot(snapshotId);
75
-
76
- var snapshotUrl = getParam('snapshot-url', '[^&]+').trim();
77
- var snapshotUrlType = getParam('snapshot-url-type', '[^&]+').toLowerCase().trim() || 'molj';
78
- if (snapshotUrl && snapshotUrlType) viewer.loadSnapshotFromUrl(snapshotUrl, snapshotUrlType);
79
-
80
- var structureUrl = getParam('structure-url', '[^&]+').trim();
81
- var structureUrlFormat = getParam('structure-url-format', '[a-z]+').toLowerCase().trim();
82
- var structureUrlIsBinary = getParam('structure-url-is-binary', '[^&]+').trim() === '1';
83
- if (structureUrl) viewer.loadStructureFromUrl(structureUrl, structureUrlFormat, structureUrlIsBinary);
84
-
85
- var pdb = getParam('pdb', '[^&]+').trim();
86
- if (pdb) viewer.loadPdb(pdb);
87
-
88
- var pdbDev = getParam('pdb-dev', '[^&]+').trim();
89
- if (pdbDev) viewer.loadPdbDev(pdbDev);
90
-
91
- var emdb = getParam('emdb', '[^&]+').trim();
92
- if (emdb) viewer.loadEmdb(emdb);
93
- </script>
94
- </body>
1
+ <!DOCTYPE html>
2
+ <html lang="en">
3
+ <head>
4
+ <meta charset="utf-8" />
5
+ <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
+ <link rel="icon" href="./favicon.ico" type="image/x-icon">
7
+ <title>Mol* Viewer</title>
8
+ <style>
9
+ * {
10
+ margin: 0;
11
+ padding: 0;
12
+ box-sizing: border-box;
13
+ }
14
+ html, body {
15
+ width: 100%;
16
+ height: 100%;
17
+ overflow: hidden;
18
+ }
19
+ hr {
20
+ margin: 10px;
21
+ }
22
+ h1, h2, h3, h4, h5 {
23
+ margin-top: 5px;
24
+ margin-bottom: 3px;
25
+ }
26
+ button {
27
+ padding: 2px;
28
+ }
29
+ #app {
30
+ position: absolute;
31
+ left: 100px;
32
+ top: 100px;
33
+ width: 800px;
34
+ height: 600px;
35
+ }
36
+ </style>
37
+ <link rel="stylesheet" type="text/css" href="molstar.css" />
38
+ </head>
39
+ <body>
40
+ <div id="app"></div>
41
+ <script type="text/javascript" src="./molstar.js"></script>
42
+ <script type="text/javascript">
43
+ function getParam(name, regex) {
44
+ var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
45
+ return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
46
+ }
47
+
48
+ var debugMode = getParam('debug-mode', '[^&]+').trim() === '1';
49
+ if (debugMode) molstar.setDebugMode(debugMode, debugMode);
50
+
51
+ var hideControls = getParam('hide-controls', '[^&]+').trim() === '1';
52
+ var collapseLeftPanel = getParam('collapse-left-panel', '[^&]+').trim() === '1';
53
+ var pdbProvider = getParam('pdb-provider', '[^&]+').trim().toLowerCase();
54
+ var emdbProvider = getParam('emdb-provider', '[^&]+').trim().toLowerCase();
55
+ var mapProvider = getParam('map-provider', '[^&]+').trim().toLowerCase();
56
+ var pixelScale = getParam('pixel-scale', '[^&]+').trim();
57
+ var pickScale = getParam('pick-scale', '[^&]+').trim();
58
+ var pickPadding = getParam('pick-padding', '[^&]+').trim();
59
+
60
+ molstar.Viewer.create('app', {
61
+ layoutShowControls: !hideControls,
62
+ viewportShowExpand: false,
63
+ collapseLeftPanel: collapseLeftPanel,
64
+ pdbProvider: pdbProvider || 'pdbe',
65
+ emdbProvider: emdbProvider || 'pdbe',
66
+ volumeStreamingServer: (mapProvider || 'pdbe') === 'rcsb'
67
+ ? 'https://maps.rcsb.org'
68
+ : 'https://www.ebi.ac.uk/pdbe/densities',
69
+ pixelScale: parseFloat(pixelScale) || 1,
70
+ pickScale: parseFloat(pickScale) || 0.25,
71
+ pickPadding: isNaN(parseFloat(pickPadding)) ? 1 : parseFloat(pickPadding),
72
+ }).then(viewer => {
73
+ var snapshotId = getParam('snapshot-id', '[^&]+').trim();
74
+ if (snapshotId) viewer.setRemoteSnapshot(snapshotId);
75
+
76
+ var snapshotUrl = getParam('snapshot-url', '[^&]+').trim();
77
+ var snapshotUrlType = getParam('snapshot-url-type', '[^&]+').toLowerCase().trim() || 'molj';
78
+ if (snapshotUrl && snapshotUrlType) viewer.loadSnapshotFromUrl(snapshotUrl, snapshotUrlType);
79
+
80
+ var structureUrl = getParam('structure-url', '[^&]+').trim();
81
+ var structureUrlFormat = getParam('structure-url-format', '[a-z]+').toLowerCase().trim();
82
+ var structureUrlIsBinary = getParam('structure-url-is-binary', '[^&]+').trim() === '1';
83
+ if (structureUrl) viewer.loadStructureFromUrl(structureUrl, structureUrlFormat, structureUrlIsBinary);
84
+
85
+ var pdb = getParam('pdb', '[^&]+').trim();
86
+ if (pdb) viewer.loadPdb(pdb);
87
+
88
+ var pdbDev = getParam('pdb-dev', '[^&]+').trim();
89
+ if (pdbDev) viewer.loadPdbDev(pdbDev);
90
+
91
+ var emdb = getParam('emdb', '[^&]+').trim();
92
+ if (emdb) viewer.loadEmdb(emdb);
93
+
94
+ var afdb = getParam('afdb', '[^&]+').trim();
95
+ if (afdb) viewer.loadAlphaFoldDb(afdb);
96
+
97
+ var modelArchive = getParam('model-archive', '[^&]+').trim();
98
+ if (modelArchive) viewer.loadModelArchive(modelArchive);
99
+ });
100
+ </script>
101
+ <!-- __MOLSTAR_ANALYTICS__ -->
102
+ </body>
95
103
  </html>