molstar 3.0.0-dev.2 → 3.0.0-dev.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +187 -187
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +102 -94
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.d.ts +2 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/index.js +87 -74
- package/lib/apps/docking-viewer/viewport.js +2 -1
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.d.ts +36 -215
- package/lib/apps/viewer/index.html +102 -94
- package/lib/apps/viewer/index.js +139 -52
- package/lib/cli/cifschema/index.d.ts +1 -1
- package/lib/cli/cifschema/index.js +15 -35
- package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
- package/lib/commonjs/apps/docking-viewer/index.js +86 -73
- package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
- package/lib/commonjs/apps/viewer/index.d.ts +36 -215
- package/lib/commonjs/apps/viewer/index.js +139 -52
- package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
- package/lib/commonjs/cli/cifschema/index.js +15 -35
- package/lib/commonjs/examples/alpha-orbitals/index.js +2 -3
- package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
- package/lib/commonjs/examples/lighting/index.d.ts +1 -1
- package/lib/commonjs/examples/lighting/index.js +58 -41
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
- package/lib/commonjs/extensions/anvil/behavior.d.ts +3 -0
- package/lib/commonjs/extensions/anvil/representation.d.ts +13 -0
- package/lib/commonjs/extensions/cellpack/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +9 -0
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +1 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
- package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +3 -0
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +3 -0
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +6 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.js +10 -3
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +3 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +3 -0
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +3 -0
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -2
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +4 -2
- package/lib/commonjs/mol-geo/geometry/base.d.ts +2 -0
- package/lib/commonjs/mol-geo/geometry/base.js +2 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +4 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -2
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +2 -0
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +3 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +4 -2
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +3 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +4 -2
- package/lib/commonjs/mol-geo/geometry/substance-data.js +3 -3
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +3 -3
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -2
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +31 -28
- package/lib/commonjs/mol-gl/renderable/cylinders.js +2 -2
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/image.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +28 -25
- package/lib/commonjs/mol-gl/renderable/mesh.js +2 -2
- package/lib/commonjs/mol-gl/renderable/points.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/schema.js +3 -3
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +31 -28
- package/lib/commonjs/mol-gl/renderable/spheres.js +2 -2
- package/lib/commonjs/mol-gl/renderable/text.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +3 -0
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
- package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
- package/lib/commonjs/mol-model/structure/model/model.js +15 -5
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
- package/lib/commonjs/mol-model/structure/model/types.js +9 -0
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +6 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +3 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +3 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +9 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +12 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
- package/lib/commonjs/mol-plugin/commands.d.ts +3 -0
- package/lib/commonjs/mol-plugin/config.d.ts +2 -0
- package/lib/commonjs/mol-plugin/config.js +10 -3
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +9 -0
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +7 -1
- package/lib/commonjs/mol-plugin-state/actions/structure.js +150 -72
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +2 -0
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +22 -0
- package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +3 -2
- package/lib/commonjs/mol-plugin-ui/controls/parameters.js +11 -6
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +8 -17
- package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
- package/lib/commonjs/mol-plugin-ui/index.js +13 -16
- package/lib/commonjs/mol-plugin-ui/plugin.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/plugin.js +76 -10
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +3 -0
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +3 -0
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +3 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +3 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +12 -0
- package/lib/commonjs/mol-repr/structure/params.d.ts +16 -0
- package/lib/commonjs/mol-repr/structure/registry.d.ts +35 -1
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/backbone.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +6 -3
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/orientation.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.js +2 -1
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.js +2 -1
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +16 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +6 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +6 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +6 -0
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +12 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +3 -2
- package/lib/commonjs/mol-repr/structure/visual/label-text.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +6 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +6 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -1
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +3 -0
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +16 -0
- package/lib/commonjs/mol-repr/volume/isosurface.js +2 -1
- package/lib/commonjs/mol-repr/volume/registry.d.ts +5 -0
- package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -0
- package/lib/commonjs/mol-repr/volume/slice.d.ts +3 -0
- package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
- package/lib/commonjs/mol-theme/color/illustrative.d.ts +2 -0
- package/lib/commonjs/mol-theme/color/illustrative.js +2 -2
- package/lib/commonjs/mol-theme/color.d.ts +1 -0
- package/lib/commonjs/mol-util/material.d.ts +5 -1
- package/lib/commonjs/mol-util/material.js +9 -7
- package/lib/examples/alpha-orbitals/index.html +61 -60
- package/lib/examples/alpha-orbitals/index.js +3 -4
- package/lib/examples/basic-wrapper/index.html +137 -136
- package/lib/examples/basic-wrapper/index.js +24 -12
- package/lib/examples/lighting/index.d.ts +1 -1
- package/lib/examples/lighting/index.html +88 -86
- package/lib/examples/lighting/index.js +59 -42
- package/lib/examples/proteopedia-wrapper/index.html +236 -235
- package/lib/examples/proteopedia-wrapper/index.js +27 -15
- package/lib/extensions/alpha-orbitals/transforms.d.ts +0 -1
- package/lib/extensions/alpha-orbitals/transforms.js +1 -14
- package/lib/extensions/anvil/behavior.d.ts +3 -0
- package/lib/extensions/anvil/representation.d.ts +13 -0
- package/lib/extensions/cellpack/representation.d.ts +3 -0
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +9 -0
- package/lib/extensions/geo-export/obj-exporter.js +1 -1
- package/lib/extensions/geo-export/usdz-exporter.js +1 -1
- package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
- package/lib/extensions/model-archive/quality-assessment/behavior.js +233 -0
- package/lib/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
- package/lib/extensions/model-archive/quality-assessment/color/plddt.js +120 -0
- package/lib/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
- package/lib/extensions/model-archive/quality-assessment/color/qmean.js +106 -0
- package/lib/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
- package/lib/extensions/model-archive/quality-assessment/prop.js +127 -0
- package/lib/extensions/mp4-export/controls.d.ts +1 -0
- package/lib/extensions/mp4-export/controls.js +9 -7
- package/lib/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +3 -0
- package/lib/extensions/rcsb/assembly-symmetry/prop.js +1 -1
- package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +3 -0
- package/lib/extensions/rcsb/validation-report/prop.js +1 -1
- package/lib/extensions/rcsb/validation-report/representation.d.ts +15 -0
- package/lib/mol-canvas3d/canvas3d.d.ts +6 -0
- package/lib/mol-canvas3d/canvas3d.js +10 -3
- package/lib/mol-canvas3d/helper/camera-helper.d.ts +3 -0
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +3 -0
- package/lib/mol-canvas3d/helper/helper.d.ts +4 -0
- package/lib/mol-canvas3d/passes/image.d.ts +3 -0
- package/lib/mol-canvas3d/passes/multi-sample.d.ts +2 -1
- package/lib/mol-canvas3d/passes/multi-sample.js +4 -2
- package/lib/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/mol-canvas3d/passes/postprocessing.js +4 -2
- package/lib/mol-geo/geometry/base.d.ts +2 -0
- package/lib/mol-geo/geometry/base.js +2 -0
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +4 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.js +4 -2
- package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
- package/lib/mol-geo/geometry/image/image.d.ts +1 -0
- package/lib/mol-geo/geometry/lines/lines.d.ts +2 -0
- package/lib/mol-geo/geometry/mesh/color-smoothing.js +1 -1
- package/lib/mol-geo/geometry/mesh/mesh.d.ts +3 -0
- package/lib/mol-geo/geometry/mesh/mesh.js +4 -2
- package/lib/mol-geo/geometry/points/points.d.ts +1 -0
- package/lib/mol-geo/geometry/spheres/spheres.d.ts +3 -0
- package/lib/mol-geo/geometry/spheres/spheres.js +4 -2
- package/lib/mol-geo/geometry/substance-data.js +3 -3
- package/lib/mol-geo/geometry/text/text.d.ts +1 -0
- package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +3 -3
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -0
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -2
- package/lib/mol-gl/renderable/cylinders.d.ts +31 -28
- package/lib/mol-gl/renderable/cylinders.js +3 -3
- package/lib/mol-gl/renderable/direct-volume.d.ts +1 -0
- package/lib/mol-gl/renderable/image.d.ts +1 -0
- package/lib/mol-gl/renderable/lines.d.ts +1 -0
- package/lib/mol-gl/renderable/mesh.d.ts +28 -25
- package/lib/mol-gl/renderable/mesh.js +3 -3
- package/lib/mol-gl/renderable/points.d.ts +1 -0
- package/lib/mol-gl/renderable/schema.d.ts +1 -0
- package/lib/mol-gl/renderable/schema.js +3 -3
- package/lib/mol-gl/renderable/spheres.d.ts +31 -28
- package/lib/mol-gl/renderable/spheres.js +3 -3
- package/lib/mol-gl/renderable/text.d.ts +1 -0
- package/lib/mol-gl/renderable/texture-mesh.d.ts +3 -0
- package/lib/mol-gl/renderable/texture-mesh.js +1 -1
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/light-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
- package/lib/mol-io/reader/cif/schema/mmcif.js +326 -1
- package/lib/mol-math/geometry/symmetry-operator.js +3 -2
- package/lib/mol-model/structure/model/model.d.ts +1 -0
- package/lib/mol-model/structure/model/model.js +15 -5
- package/lib/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
- package/lib/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
- package/lib/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
- package/lib/mol-model/structure/model/properties/utils/atomic-derived.js +5 -2
- package/lib/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
- package/lib/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
- package/lib/mol-model/structure/model/types.js +9 -0
- package/lib/mol-model/structure/structure/unit/rings.js +2 -0
- package/lib/mol-model-formats/shape/ply.d.ts +6 -0
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +3 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +3 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +9 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +12 -0
- package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -0
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
- package/lib/mol-plugin/commands.d.ts +3 -0
- package/lib/mol-plugin/config.d.ts +2 -0
- package/lib/mol-plugin/config.js +9 -3
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +9 -0
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/structure.d.ts +7 -1
- package/lib/mol-plugin-state/actions/structure.js +150 -72
- package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
- package/lib/mol-plugin-state/builder/structure/hierarchy-preset.js +14 -9
- package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
- package/lib/mol-plugin-state/helpers/structure-selection-query.js +34 -20
- package/lib/mol-plugin-state/manager/structure/component.d.ts +2 -0
- package/lib/mol-plugin-state/manager/structure/component.js +2 -2
- package/lib/mol-plugin-state/transforms/representation.d.ts +22 -0
- package/lib/mol-plugin-ui/controls/parameters.d.ts +3 -2
- package/lib/mol-plugin-ui/controls/parameters.js +12 -7
- package/lib/mol-plugin-ui/hooks/use-behavior.d.ts +1 -1
- package/lib/mol-plugin-ui/hooks/use-behavior.js +9 -18
- package/lib/mol-plugin-ui/index.d.ts +4 -4
- package/lib/mol-plugin-ui/index.js +11 -13
- package/lib/mol-plugin-ui/plugin.d.ts +1 -1
- package/lib/mol-plugin-ui/plugin.js +76 -10
- package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -616
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +127 -127
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-repr/shape/loci/angle.d.ts +3 -0
- package/lib/mol-repr/shape/loci/common.d.ts +1 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +3 -0
- package/lib/mol-repr/shape/loci/distance.d.ts +1 -0
- package/lib/mol-repr/shape/loci/label.d.ts +1 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +3 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +3 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +3 -0
- package/lib/mol-repr/structure/complex-visual.d.ts +12 -0
- package/lib/mol-repr/structure/params.d.ts +16 -0
- package/lib/mol-repr/structure/registry.d.ts +35 -1
- package/lib/mol-repr/structure/representation/backbone.d.ts +9 -0
- package/lib/mol-repr/structure/representation/backbone.js +2 -1
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +9 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.js +2 -1
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
- package/lib/mol-repr/structure/representation/carbohydrate.js +2 -1
- package/lib/mol-repr/structure/representation/cartoon.d.ts +9 -0
- package/lib/mol-repr/structure/representation/cartoon.js +2 -1
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +9 -0
- package/lib/mol-repr/structure/representation/ellipsoid.js +2 -1
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +9 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.js +2 -1
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/mol-repr/structure/representation/label.d.ts +6 -3
- package/lib/mol-repr/structure/representation/line.d.ts +3 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +9 -0
- package/lib/mol-repr/structure/representation/molecular-surface.js +2 -1
- package/lib/mol-repr/structure/representation/orientation.d.ts +9 -0
- package/lib/mol-repr/structure/representation/orientation.js +2 -1
- package/lib/mol-repr/structure/representation/point.d.ts +3 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +9 -0
- package/lib/mol-repr/structure/representation/putty.js +2 -1
- package/lib/mol-repr/structure/representation/spacefill.d.ts +9 -0
- package/lib/mol-repr/structure/representation/spacefill.js +2 -1
- package/lib/mol-repr/structure/units-visual.d.ts +16 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +6 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +6 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +3 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
- package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +6 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +3 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +12 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
- package/lib/mol-repr/structure/visual/label-text.d.ts +3 -2
- package/lib/mol-repr/structure/visual/label-text.js +2 -2
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +3 -0
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +3 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +3 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +3 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +6 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +6 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +3 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +3 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +3 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +3 -0
- package/lib/mol-repr/structure/visual/util/bond.js +1 -1
- package/lib/mol-repr/volume/direct-volume.d.ts +3 -0
- package/lib/mol-repr/volume/isosurface.d.ts +16 -0
- package/lib/mol-repr/volume/isosurface.js +2 -1
- package/lib/mol-repr/volume/registry.d.ts +5 -0
- package/lib/mol-repr/volume/representation.d.ts +1 -0
- package/lib/mol-repr/volume/slice.d.ts +3 -0
- package/lib/mol-script/language/builder.d.ts +0 -1
- package/lib/mol-theme/color/illustrative.d.ts +2 -0
- package/lib/mol-theme/color/illustrative.js +2 -2
- package/lib/mol-theme/color.d.ts +1 -0
- package/lib/mol-util/material.d.ts +5 -1
- package/lib/mol-util/material.js +9 -7
- package/package.json +162 -160
|
@@ -24,7 +24,7 @@ export { PLUGIN_VERSION as version } from '../../mol-plugin/version';
|
|
|
24
24
|
export { setDebugMode, setProductionMode } from '../../mol-util/debug';
|
|
25
25
|
declare const DefaultViewerOptions: {
|
|
26
26
|
customFormats: [string, DataFormatProvider<any, any, any>][];
|
|
27
|
-
extensions: ("cellpack" | "g3d" | "geo-export" | "mp4-export" | "pdbe-structure-quality-report" | "dnatco-confal-pyramids" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation")[];
|
|
27
|
+
extensions: ("cellpack" | "g3d" | "geo-export" | "mp4-export" | "pdbe-structure-quality-report" | "dnatco-confal-pyramids" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation" | "ma-quality-assessment")[];
|
|
28
28
|
layoutIsExpanded: boolean;
|
|
29
29
|
layoutShowControls: boolean;
|
|
30
30
|
layoutShowRemoteState: boolean;
|
|
@@ -53,7 +53,8 @@ declare const DefaultViewerOptions: {
|
|
|
53
53
|
declare type ViewerOptions = typeof DefaultViewerOptions;
|
|
54
54
|
export declare class Viewer {
|
|
55
55
|
plugin: PluginUIContext;
|
|
56
|
-
constructor(
|
|
56
|
+
constructor(plugin: PluginUIContext);
|
|
57
|
+
static create(elementOrId: string | HTMLElement, options?: Partial<ViewerOptions>): Promise<Viewer>;
|
|
57
58
|
setRemoteSnapshot(id: string): Promise<void>;
|
|
58
59
|
loadSnapshotFromUrl(url: string, type: PluginState.SnapshotType): Promise<void>;
|
|
59
60
|
loadStructureFromUrl(url: string, format?: BuiltInTrajectoryFormat, isBinary?: boolean, options?: LoadStructureOptions): Promise<void>;
|
|
@@ -66,6 +67,8 @@ export declare class Viewer {
|
|
|
66
67
|
loadEmdb(emdb: string, options?: {
|
|
67
68
|
detail?: number;
|
|
68
69
|
}): Promise<void>;
|
|
70
|
+
loadAlphaFoldDb(afdb: string): Promise<void>;
|
|
71
|
+
loadModelArchive(id: string): Promise<void>;
|
|
69
72
|
/**
|
|
70
73
|
* @example Load X-ray density from volume server
|
|
71
74
|
viewer.loadVolumeFromUrl({
|
|
@@ -130,77 +133,7 @@ export declare class Viewer {
|
|
|
130
133
|
unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
131
134
|
structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
132
135
|
structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
133
|
-
representation:
|
|
134
|
-
components?: undefined;
|
|
135
|
-
representations?: undefined;
|
|
136
|
-
} | {
|
|
137
|
-
components: {
|
|
138
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
139
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
140
|
-
};
|
|
141
|
-
representations: {
|
|
142
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
143
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
144
|
-
};
|
|
145
|
-
} | {
|
|
146
|
-
components?: undefined;
|
|
147
|
-
representations?: undefined;
|
|
148
|
-
} | {
|
|
149
|
-
components: {
|
|
150
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
151
|
-
};
|
|
152
|
-
representations: {
|
|
153
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
154
|
-
};
|
|
155
|
-
} | {
|
|
156
|
-
components?: undefined;
|
|
157
|
-
representations?: undefined;
|
|
158
|
-
} | {
|
|
159
|
-
components: {
|
|
160
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
161
|
-
ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
162
|
-
nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
163
|
-
branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
164
|
-
water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
165
|
-
ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
166
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
167
|
-
coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
168
|
-
};
|
|
169
|
-
representations: {
|
|
170
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
171
|
-
ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
172
|
-
nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
173
|
-
branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
174
|
-
branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
175
|
-
water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
176
|
-
ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
177
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
178
|
-
coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
179
|
-
};
|
|
180
|
-
} | {
|
|
181
|
-
components?: undefined;
|
|
182
|
-
representations?: undefined;
|
|
183
|
-
} | {
|
|
184
|
-
components: {
|
|
185
|
-
all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
186
|
-
branched: undefined;
|
|
187
|
-
};
|
|
188
|
-
representations: {
|
|
189
|
-
all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
190
|
-
};
|
|
191
|
-
} | {
|
|
192
|
-
components?: undefined;
|
|
193
|
-
representations?: undefined;
|
|
194
|
-
} | {
|
|
195
|
-
components: {
|
|
196
|
-
protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
197
|
-
nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
198
|
-
};
|
|
199
|
-
representations: {
|
|
200
|
-
protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
201
|
-
nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
202
|
-
};
|
|
203
|
-
} | undefined;
|
|
136
|
+
representation: any;
|
|
204
137
|
} | {
|
|
205
138
|
models?: undefined;
|
|
206
139
|
structures?: undefined;
|
|
@@ -213,154 +146,14 @@ export declare class Viewer {
|
|
|
213
146
|
unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
214
147
|
structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
215
148
|
structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
216
|
-
representation:
|
|
217
|
-
components?: undefined;
|
|
218
|
-
representations?: undefined;
|
|
219
|
-
} | {
|
|
220
|
-
components: {
|
|
221
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
222
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
223
|
-
};
|
|
224
|
-
representations: {
|
|
225
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
226
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
227
|
-
};
|
|
228
|
-
} | {
|
|
229
|
-
components?: undefined;
|
|
230
|
-
representations?: undefined;
|
|
231
|
-
} | {
|
|
232
|
-
components: {
|
|
233
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
234
|
-
};
|
|
235
|
-
representations: {
|
|
236
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
237
|
-
};
|
|
238
|
-
} | {
|
|
239
|
-
components?: undefined;
|
|
240
|
-
representations?: undefined;
|
|
241
|
-
} | {
|
|
242
|
-
components: {
|
|
243
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
244
|
-
ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
245
|
-
nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
246
|
-
branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
247
|
-
water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
248
|
-
ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
249
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
250
|
-
coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
251
|
-
};
|
|
252
|
-
representations: {
|
|
253
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
254
|
-
ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
255
|
-
nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
256
|
-
branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
257
|
-
branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
258
|
-
water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
259
|
-
ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
260
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
261
|
-
coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
262
|
-
};
|
|
263
|
-
} | {
|
|
264
|
-
components?: undefined;
|
|
265
|
-
representations?: undefined;
|
|
266
|
-
} | {
|
|
267
|
-
components: {
|
|
268
|
-
all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
269
|
-
branched: undefined;
|
|
270
|
-
};
|
|
271
|
-
representations: {
|
|
272
|
-
all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
273
|
-
};
|
|
274
|
-
} | {
|
|
275
|
-
components?: undefined;
|
|
276
|
-
representations?: undefined;
|
|
277
|
-
} | {
|
|
278
|
-
components: {
|
|
279
|
-
protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
280
|
-
nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
281
|
-
};
|
|
282
|
-
representations: {
|
|
283
|
-
protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
284
|
-
nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
285
|
-
};
|
|
286
|
-
} | undefined;
|
|
149
|
+
representation: any;
|
|
287
150
|
} | {
|
|
288
151
|
model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
289
152
|
modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
290
153
|
unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
291
154
|
structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
292
155
|
structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
293
|
-
representation:
|
|
294
|
-
components?: undefined;
|
|
295
|
-
representations?: undefined;
|
|
296
|
-
} | {
|
|
297
|
-
components: {
|
|
298
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
299
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
300
|
-
};
|
|
301
|
-
representations: {
|
|
302
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
303
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
304
|
-
};
|
|
305
|
-
} | {
|
|
306
|
-
components?: undefined;
|
|
307
|
-
representations?: undefined;
|
|
308
|
-
} | {
|
|
309
|
-
components: {
|
|
310
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
311
|
-
};
|
|
312
|
-
representations: {
|
|
313
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
314
|
-
};
|
|
315
|
-
} | {
|
|
316
|
-
components?: undefined;
|
|
317
|
-
representations?: undefined;
|
|
318
|
-
} | {
|
|
319
|
-
components: {
|
|
320
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
321
|
-
ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
322
|
-
nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
323
|
-
branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
324
|
-
water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
325
|
-
ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
326
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
327
|
-
coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
328
|
-
};
|
|
329
|
-
representations: {
|
|
330
|
-
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
331
|
-
ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
332
|
-
nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
333
|
-
branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
334
|
-
branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
335
|
-
water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
336
|
-
ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
337
|
-
lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
338
|
-
coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
339
|
-
};
|
|
340
|
-
} | {
|
|
341
|
-
components?: undefined;
|
|
342
|
-
representations?: undefined;
|
|
343
|
-
} | {
|
|
344
|
-
components: {
|
|
345
|
-
all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
346
|
-
branched: undefined;
|
|
347
|
-
};
|
|
348
|
-
representations: {
|
|
349
|
-
all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
350
|
-
};
|
|
351
|
-
} | {
|
|
352
|
-
components?: undefined;
|
|
353
|
-
representations?: undefined;
|
|
354
|
-
} | {
|
|
355
|
-
components: {
|
|
356
|
-
protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
357
|
-
nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
358
|
-
};
|
|
359
|
-
representations: {
|
|
360
|
-
protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
361
|
-
nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
362
|
-
};
|
|
363
|
-
} | undefined;
|
|
156
|
+
representation: any;
|
|
364
157
|
} | undefined;
|
|
365
158
|
}>;
|
|
366
159
|
handleResize(): void;
|
|
@@ -409,3 +202,31 @@ export interface LoadTrajectoryParams {
|
|
|
409
202
|
coordinatesLabel?: string;
|
|
410
203
|
preset?: keyof PresetTrajectoryHierarchy;
|
|
411
204
|
}
|
|
205
|
+
export declare const ViewerAutoPreset: StructureRepresentationPresetProvider<{
|
|
206
|
+
ignoreHydrogens: boolean | undefined;
|
|
207
|
+
quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined;
|
|
208
|
+
theme: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
209
|
+
globalName: any;
|
|
210
|
+
carbonColor: any;
|
|
211
|
+
symmetryColor: any;
|
|
212
|
+
focus: any;
|
|
213
|
+
}> | undefined;
|
|
214
|
+
}, {
|
|
215
|
+
components?: undefined;
|
|
216
|
+
representations?: undefined;
|
|
217
|
+
} | {
|
|
218
|
+
components: {
|
|
219
|
+
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
220
|
+
};
|
|
221
|
+
representations: {
|
|
222
|
+
polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
223
|
+
};
|
|
224
|
+
} | {
|
|
225
|
+
components: {
|
|
226
|
+
all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
|
|
227
|
+
branched: undefined;
|
|
228
|
+
};
|
|
229
|
+
representations: {
|
|
230
|
+
all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
|
|
231
|
+
};
|
|
232
|
+
}>;
|
|
@@ -1,95 +1,103 @@
|
|
|
1
|
-
<!DOCTYPE html>
|
|
2
|
-
<html lang="en">
|
|
3
|
-
<head>
|
|
4
|
-
<meta charset="utf-8" />
|
|
5
|
-
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
|
|
6
|
-
<link rel="icon" href="./favicon.ico" type="image/x-icon">
|
|
7
|
-
<title>Mol* Viewer</title>
|
|
8
|
-
<style>
|
|
9
|
-
* {
|
|
10
|
-
margin: 0;
|
|
11
|
-
padding: 0;
|
|
12
|
-
box-sizing: border-box;
|
|
13
|
-
}
|
|
14
|
-
html, body {
|
|
15
|
-
width: 100%;
|
|
16
|
-
height: 100%;
|
|
17
|
-
overflow: hidden;
|
|
18
|
-
}
|
|
19
|
-
hr {
|
|
20
|
-
margin: 10px;
|
|
21
|
-
}
|
|
22
|
-
h1, h2, h3, h4, h5 {
|
|
23
|
-
margin-top: 5px;
|
|
24
|
-
margin-bottom: 3px;
|
|
25
|
-
}
|
|
26
|
-
button {
|
|
27
|
-
padding: 2px;
|
|
28
|
-
}
|
|
29
|
-
#app {
|
|
30
|
-
position: absolute;
|
|
31
|
-
left: 100px;
|
|
32
|
-
top: 100px;
|
|
33
|
-
width: 800px;
|
|
34
|
-
height: 600px;
|
|
35
|
-
}
|
|
36
|
-
</style>
|
|
37
|
-
<link rel="stylesheet" type="text/css" href="molstar.css" />
|
|
38
|
-
</head>
|
|
39
|
-
<body>
|
|
40
|
-
<div id="app"></div>
|
|
41
|
-
<script type="text/javascript" src="./molstar.js"></script>
|
|
42
|
-
<script type="text/javascript">
|
|
43
|
-
function getParam(name, regex) {
|
|
44
|
-
var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
|
|
45
|
-
return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
|
|
46
|
-
}
|
|
47
|
-
|
|
48
|
-
var debugMode = getParam('debug-mode', '[^&]+').trim() === '1';
|
|
49
|
-
if (debugMode) molstar.setDebugMode(debugMode, debugMode);
|
|
50
|
-
|
|
51
|
-
var hideControls = getParam('hide-controls', '[^&]+').trim() === '1';
|
|
52
|
-
var collapseLeftPanel = getParam('collapse-left-panel', '[^&]+').trim() === '1';
|
|
53
|
-
var pdbProvider = getParam('pdb-provider', '[^&]+').trim().toLowerCase();
|
|
54
|
-
var emdbProvider = getParam('emdb-provider', '[^&]+').trim().toLowerCase();
|
|
55
|
-
var mapProvider = getParam('map-provider', '[^&]+').trim().toLowerCase();
|
|
56
|
-
var pixelScale = getParam('pixel-scale', '[^&]+').trim();
|
|
57
|
-
var pickScale = getParam('pick-scale', '[^&]+').trim();
|
|
58
|
-
var pickPadding = getParam('pick-padding', '[^&]+').trim();
|
|
59
|
-
|
|
60
|
-
|
|
61
|
-
|
|
62
|
-
|
|
63
|
-
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
|
|
68
|
-
|
|
69
|
-
|
|
70
|
-
|
|
71
|
-
|
|
72
|
-
|
|
73
|
-
|
|
74
|
-
|
|
75
|
-
|
|
76
|
-
|
|
77
|
-
|
|
78
|
-
|
|
79
|
-
|
|
80
|
-
|
|
81
|
-
|
|
82
|
-
|
|
83
|
-
|
|
84
|
-
|
|
85
|
-
|
|
86
|
-
|
|
87
|
-
|
|
88
|
-
|
|
89
|
-
|
|
90
|
-
|
|
91
|
-
|
|
92
|
-
|
|
93
|
-
|
|
94
|
-
|
|
1
|
+
<!DOCTYPE html>
|
|
2
|
+
<html lang="en">
|
|
3
|
+
<head>
|
|
4
|
+
<meta charset="utf-8" />
|
|
5
|
+
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
|
|
6
|
+
<link rel="icon" href="./favicon.ico" type="image/x-icon">
|
|
7
|
+
<title>Mol* Viewer</title>
|
|
8
|
+
<style>
|
|
9
|
+
* {
|
|
10
|
+
margin: 0;
|
|
11
|
+
padding: 0;
|
|
12
|
+
box-sizing: border-box;
|
|
13
|
+
}
|
|
14
|
+
html, body {
|
|
15
|
+
width: 100%;
|
|
16
|
+
height: 100%;
|
|
17
|
+
overflow: hidden;
|
|
18
|
+
}
|
|
19
|
+
hr {
|
|
20
|
+
margin: 10px;
|
|
21
|
+
}
|
|
22
|
+
h1, h2, h3, h4, h5 {
|
|
23
|
+
margin-top: 5px;
|
|
24
|
+
margin-bottom: 3px;
|
|
25
|
+
}
|
|
26
|
+
button {
|
|
27
|
+
padding: 2px;
|
|
28
|
+
}
|
|
29
|
+
#app {
|
|
30
|
+
position: absolute;
|
|
31
|
+
left: 100px;
|
|
32
|
+
top: 100px;
|
|
33
|
+
width: 800px;
|
|
34
|
+
height: 600px;
|
|
35
|
+
}
|
|
36
|
+
</style>
|
|
37
|
+
<link rel="stylesheet" type="text/css" href="molstar.css" />
|
|
38
|
+
</head>
|
|
39
|
+
<body>
|
|
40
|
+
<div id="app"></div>
|
|
41
|
+
<script type="text/javascript" src="./molstar.js"></script>
|
|
42
|
+
<script type="text/javascript">
|
|
43
|
+
function getParam(name, regex) {
|
|
44
|
+
var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
|
|
45
|
+
return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
|
|
46
|
+
}
|
|
47
|
+
|
|
48
|
+
var debugMode = getParam('debug-mode', '[^&]+').trim() === '1';
|
|
49
|
+
if (debugMode) molstar.setDebugMode(debugMode, debugMode);
|
|
50
|
+
|
|
51
|
+
var hideControls = getParam('hide-controls', '[^&]+').trim() === '1';
|
|
52
|
+
var collapseLeftPanel = getParam('collapse-left-panel', '[^&]+').trim() === '1';
|
|
53
|
+
var pdbProvider = getParam('pdb-provider', '[^&]+').trim().toLowerCase();
|
|
54
|
+
var emdbProvider = getParam('emdb-provider', '[^&]+').trim().toLowerCase();
|
|
55
|
+
var mapProvider = getParam('map-provider', '[^&]+').trim().toLowerCase();
|
|
56
|
+
var pixelScale = getParam('pixel-scale', '[^&]+').trim();
|
|
57
|
+
var pickScale = getParam('pick-scale', '[^&]+').trim();
|
|
58
|
+
var pickPadding = getParam('pick-padding', '[^&]+').trim();
|
|
59
|
+
|
|
60
|
+
molstar.Viewer.create('app', {
|
|
61
|
+
layoutShowControls: !hideControls,
|
|
62
|
+
viewportShowExpand: false,
|
|
63
|
+
collapseLeftPanel: collapseLeftPanel,
|
|
64
|
+
pdbProvider: pdbProvider || 'pdbe',
|
|
65
|
+
emdbProvider: emdbProvider || 'pdbe',
|
|
66
|
+
volumeStreamingServer: (mapProvider || 'pdbe') === 'rcsb'
|
|
67
|
+
? 'https://maps.rcsb.org'
|
|
68
|
+
: 'https://www.ebi.ac.uk/pdbe/densities',
|
|
69
|
+
pixelScale: parseFloat(pixelScale) || 1,
|
|
70
|
+
pickScale: parseFloat(pickScale) || 0.25,
|
|
71
|
+
pickPadding: isNaN(parseFloat(pickPadding)) ? 1 : parseFloat(pickPadding),
|
|
72
|
+
}).then(viewer => {
|
|
73
|
+
var snapshotId = getParam('snapshot-id', '[^&]+').trim();
|
|
74
|
+
if (snapshotId) viewer.setRemoteSnapshot(snapshotId);
|
|
75
|
+
|
|
76
|
+
var snapshotUrl = getParam('snapshot-url', '[^&]+').trim();
|
|
77
|
+
var snapshotUrlType = getParam('snapshot-url-type', '[^&]+').toLowerCase().trim() || 'molj';
|
|
78
|
+
if (snapshotUrl && snapshotUrlType) viewer.loadSnapshotFromUrl(snapshotUrl, snapshotUrlType);
|
|
79
|
+
|
|
80
|
+
var structureUrl = getParam('structure-url', '[^&]+').trim();
|
|
81
|
+
var structureUrlFormat = getParam('structure-url-format', '[a-z]+').toLowerCase().trim();
|
|
82
|
+
var structureUrlIsBinary = getParam('structure-url-is-binary', '[^&]+').trim() === '1';
|
|
83
|
+
if (structureUrl) viewer.loadStructureFromUrl(structureUrl, structureUrlFormat, structureUrlIsBinary);
|
|
84
|
+
|
|
85
|
+
var pdb = getParam('pdb', '[^&]+').trim();
|
|
86
|
+
if (pdb) viewer.loadPdb(pdb);
|
|
87
|
+
|
|
88
|
+
var pdbDev = getParam('pdb-dev', '[^&]+').trim();
|
|
89
|
+
if (pdbDev) viewer.loadPdbDev(pdbDev);
|
|
90
|
+
|
|
91
|
+
var emdb = getParam('emdb', '[^&]+').trim();
|
|
92
|
+
if (emdb) viewer.loadEmdb(emdb);
|
|
93
|
+
|
|
94
|
+
var afdb = getParam('afdb', '[^&]+').trim();
|
|
95
|
+
if (afdb) viewer.loadAlphaFoldDb(afdb);
|
|
96
|
+
|
|
97
|
+
var modelArchive = getParam('model-archive', '[^&]+').trim();
|
|
98
|
+
if (modelArchive) viewer.loadModelArchive(modelArchive);
|
|
99
|
+
});
|
|
100
|
+
</script>
|
|
101
|
+
<!-- __MOLSTAR_ANALYTICS__ -->
|
|
102
|
+
</body>
|
|
95
103
|
</html>
|