moflo 4.8.32 → 4.8.34

package/bin/setup-project.mjs

@@ -1,253 +1,253 @@
 #!/usr/bin/env node
-/**
- * MoFlo Project Setup
- *
- * Copies the agent-bootstrap guidance into the consuming project and
- * adds a CLAUDE.md section so subagents automatically follow the protocol.
- *
- * Usage:
- *   npx flo-setup            # First-time setup
- *   npx flo-setup --update   # Refresh bootstrap file after moflo upgrade
- *   npx flo-setup --check    # Check if setup is current
- *
- * What it does:
- *   1. Copies .claude/guidance/agent-bootstrap.md → project's .claude/guidance/moflo-bootstrap.md
- *   2. Appends a subagent protocol section to CLAUDE.md (idempotent, with markers)
- *
- * The project can layer its own .claude/guidance/agent-bootstrap.md on top for
- * project-specific rules (companyId, entity templates, etc.).
- */
-
-import { existsSync, readFileSync, writeFileSync, mkdirSync, copyFileSync } from 'node:fs';
-import { dirname, resolve, join } from 'node:path';
-import { fileURLToPath } from 'node:url';
-
-const __dirname = dirname(fileURLToPath(import.meta.url));
-const mofloRoot = resolve(__dirname, '..');
-
-const args = process.argv.slice(2);
-const updateOnly = args.includes('--update');
-const checkOnly = args.includes('--check');
-
-// Markers for idempotent CLAUDE.md updates — keep in sync with claudemd-generator.ts
-const MARKER_START = '<!-- MOFLO:INJECTED:START -->';
-const MARKER_END = '<!-- MOFLO:INJECTED:END -->';
-// Legacy markers to detect and replace
-const LEGACY_STARTS = ['<!-- MOFLO:SUBAGENT-PROTOCOL:START -->', '<!-- MOFLO:START -->'];
-const LEGACY_ENDS = ['<!-- MOFLO:SUBAGENT-PROTOCOL:END -->', '<!-- MOFLO:END -->'];
-
-// Minimal injection — just enough for Claude to work with moflo.
-// All detailed docs live in .claude/guidance/shipped/moflo.md.
-const CLAUDE_MD_SECTION = `${MARKER_START}
-## MoFlo — AI Agent Orchestration
-
-This project uses [MoFlo](https://github.com/eric-cielo/moflo) for AI-assisted development workflows.
-
-### FIRST ACTION ON EVERY PROMPT: Search Memory
-
-Your first tool call for every new user prompt MUST be a memory search. Do this BEFORE Glob, Grep, Read, or any file exploration.
-
-\`\`\`
-mcp__moflo__memory_search — query: "<task description>", namespace: "guidance" or "patterns" or "code-map"
-\`\`\`
-
-Search \`guidance\` and \`patterns\` namespaces on every prompt. Search \`code-map\` when navigating the codebase.
-When the user asks you to remember something: \`mcp__moflo__memory_store\` with namespace \`knowledge\`.
-
-### Workflow Gates (enforced automatically)
-
-- **Memory-first**: Must search memory before Glob/Grep/Read
-- **TaskCreate-first**: Must call TaskCreate before spawning Agent tool
-
-- **Task Icons**: \`TaskCreate\` MUST use ICON+[Role] format — see \`.claude/guidance/task-icons.md\`
-
-### MCP Tools (preferred over CLI)
-
-| Tool | Purpose |
-|------|---------|
-| \`mcp__moflo__memory_search\` | Semantic search across indexed knowledge |
-| \`mcp__moflo__memory_store\` | Store patterns and decisions |
-| \`mcp__moflo__hooks_route\` | Route task to optimal agent type |
-| \`mcp__moflo__hooks_pre-task\` | Record task start |
-| \`mcp__moflo__hooks_post-task\` | Record task completion for learning |
-
-### CLI Fallback
-
-\`\`\`bash
-npx flo-search "[query]" --namespace guidance   # Semantic search
-npx flo doctor --fix                             # Health check
-\`\`\`
-
-### Full Reference
-
-For CLI commands, hooks, agents, swarm config, memory commands, and moflo.yaml options, see:
-\`.claude/guidance/shipped/moflo.md\`
-${MARKER_END}`;
-
-function log(msg) {
-  console.log(`[flo-setup] ${msg}`);
-}
-
-function findProjectRoot() {
-  // Walk up from cwd looking for package.json that depends on moflo
-  let dir = process.cwd();
-  const root = resolve(dir, '/');
-
-  while (dir !== root) {
-    const pkgPath = join(dir, 'package.json');
-    if (existsSync(pkgPath)) {
-      try {
-        const pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));
-        const deps = { ...pkg.dependencies, ...pkg.devDependencies };
-        if (deps && deps.moflo) {
-          return dir;
-        }
-      } catch { /* ignore parse errors */ }
-    }
-    dir = dirname(dir);
-  }
-
-  // Fallback: use cwd if it has a package.json
-  if (existsSync(join(process.cwd(), 'package.json'))) {
-    return process.cwd();
-  }
-
-  return null;
-}
-
-function copyBootstrap(projectRoot) {
-  const shippedSource = join(mofloRoot, '.claude', 'guidance', 'shipped', 'agent-bootstrap.md');
-  const source = existsSync(shippedSource)
-    ? shippedSource
-    : join(mofloRoot, '.claude', 'guidance', 'agent-bootstrap.md');
-  const targetDir = join(projectRoot, '.claude', 'guidance');
-  const target = join(targetDir, 'moflo-bootstrap.md');
-
-  if (!existsSync(source)) {
-    log('❌ Source bootstrap not found in moflo package');
-    return false;
-  }
-
-  // Read source content and prepend auto-generated notice
-  const content = readFileSync(source, 'utf-8');
-  const header = `<!-- AUTO-GENERATED by flo-setup. Do not edit — changes will be overwritten. -->
-<!-- Source: node_modules/moflo/.claude/guidance/agent-bootstrap.md -->
-<!-- To customize, create .claude/guidance/agent-bootstrap.md for project-specific rules. -->
-
-`;
-
-  mkdirSync(targetDir, { recursive: true });
-
-  // Check if file exists and is current
-  if (existsSync(target)) {
-    const existing = readFileSync(target, 'utf-8');
-    const newContent = header + content;
-    if (existing === newContent) {
-      log('✅ moflo-bootstrap.md is current');
-      return true;
-    }
-    log('📝 Updating moflo-bootstrap.md');
-  } else {
-    log('📝 Creating .claude/guidance/moflo-bootstrap.md');
-  }
-
-  if (!checkOnly) {
-    writeFileSync(target, header + content, 'utf-8');
-  }
-  return true;
-}
-
-function updateClaudeMd(projectRoot) {
-  const claudeMdPath = join(projectRoot, 'CLAUDE.md');
-
-  if (!existsSync(claudeMdPath)) {
-    if (checkOnly) {
-      log('⚠️  No CLAUDE.md found');
-      return false;
-    }
-    log('📝 Creating CLAUDE.md with subagent protocol section');
-    writeFileSync(claudeMdPath, `# Project Configuration\n\n${CLAUDE_MD_SECTION}\n`, 'utf-8');
-    return true;
-  }
-
-  const content = readFileSync(claudeMdPath, 'utf-8');
-
-  // Check for current or legacy markers and replace
-  const allStarts = [MARKER_START, ...LEGACY_STARTS];
-  const allEnds = [MARKER_END, ...LEGACY_ENDS];
-
-  for (let i = 0; i < allStarts.length; i++) {
-    if (content.includes(allStarts[i])) {
-      const startIdx = content.indexOf(allStarts[i]);
-      const endIdx = content.indexOf(allEnds[i]);
-
-      if (endIdx > startIdx) {
-        // If current markers and content matches, we're up to date
-        if (i === 0) {
-          const existingSection = content.substring(startIdx, endIdx + allEnds[i].length);
-          if (existingSection === CLAUDE_MD_SECTION) {
-            log('✅ CLAUDE.md moflo section is current');
-            return true;
-          }
-        }
-
-        // Replace (current or legacy) with new section
-        if (!checkOnly) {
-          const updated = content.substring(0, startIdx) + CLAUDE_MD_SECTION + content.substring(endIdx + allEnds[i].length);
-          writeFileSync(claudeMdPath, updated, 'utf-8');
-          log(i === 0 ? '📝 Updated CLAUDE.md moflo section' : '📝 Replaced legacy CLAUDE.md section with minimal moflo injection');
-        } else {
-          log('⚠️  CLAUDE.md moflo section needs update');
-        }
-        return true;
-      }
-    }
-  }
-
-  if (updateOnly) {
-    log('⚠️  CLAUDE.md has no moflo section (run without --update to add)');
-    return false;
-  }
-
-  if (checkOnly) {
-    log('⚠️  CLAUDE.md missing subagent protocol section');
-    return false;
-  }
-
-  // Append section to end of CLAUDE.md
-  const separator = content.endsWith('\n') ? '\n' : '\n\n';
-  writeFileSync(claudeMdPath, content + separator + CLAUDE_MD_SECTION + '\n', 'utf-8');
-  log('📝 Added subagent protocol section to CLAUDE.md');
-  return true;
-}
-
-function main() {
-  console.log('');
-  console.log('MoFlo Project Setup');
-  console.log('───────────────────');
-
-  const projectRoot = findProjectRoot();
-  if (!projectRoot) {
-    log('❌ Could not find project root (no package.json with moflo dependency)');
-    process.exit(1);
-  }
-
-  log(`Project: ${projectRoot}`);
-  console.log('');
-
-  // Step 1: Copy bootstrap file
-  const bootstrapOk = copyBootstrap(projectRoot);
-
-  // Step 2: Update CLAUDE.md (skip on --update, only refresh the file)
-  const claudeOk = updateOnly ? true : updateClaudeMd(projectRoot);
-
-  console.log('');
-  if (checkOnly) {
-    log(bootstrapOk && claudeOk ? '✅ Setup is current' : '⚠️  Setup needs attention');
-  } else {
-    log('✅ Done. Subagents will now follow the MoFlo bootstrap protocol.');
-  }
-  console.log('');
-}
-
-main();
+/**
+ * MoFlo Project Setup
+ *
+ * Copies the agent-bootstrap guidance into the consuming project and
+ * adds a CLAUDE.md section so subagents automatically follow the protocol.
+ *
+ * Usage:
+ *   npx flo-setup            # First-time setup
+ *   npx flo-setup --update   # Refresh bootstrap file after moflo upgrade
+ *   npx flo-setup --check    # Check if setup is current
+ *
+ * What it does:
+ *   1. Copies .claude/guidance/agent-bootstrap.md → project's .claude/guidance/moflo-bootstrap.md
+ *   2. Appends a subagent protocol section to CLAUDE.md (idempotent, with markers)
+ *
+ * The project can layer its own .claude/guidance/agent-bootstrap.md on top for
+ * project-specific rules (companyId, entity templates, etc.).
+ */
+
+import { existsSync, readFileSync, writeFileSync, mkdirSync, copyFileSync } from 'node:fs';
+import { dirname, resolve, join } from 'node:path';
+import { fileURLToPath } from 'node:url';
+
+const __dirname = dirname(fileURLToPath(import.meta.url));
+const mofloRoot = resolve(__dirname, '..');
+
+const args = process.argv.slice(2);
+const updateOnly = args.includes('--update');
+const checkOnly = args.includes('--check');
+
+// Markers for idempotent CLAUDE.md updates — keep in sync with claudemd-generator.ts
+const MARKER_START = '<!-- MOFLO:INJECTED:START -->';
+const MARKER_END = '<!-- MOFLO:INJECTED:END -->';
+// Legacy markers to detect and replace
+const LEGACY_STARTS = ['<!-- MOFLO:SUBAGENT-PROTOCOL:START -->', '<!-- MOFLO:START -->'];
+const LEGACY_ENDS = ['<!-- MOFLO:SUBAGENT-PROTOCOL:END -->', '<!-- MOFLO:END -->'];
+
+// Minimal injection — just enough for Claude to work with moflo.
+// All detailed docs live in .claude/guidance/shipped/moflo.md.
+const CLAUDE_MD_SECTION = `${MARKER_START}
+## MoFlo — AI Agent Orchestration
+
+This project uses [MoFlo](https://github.com/eric-cielo/moflo) for AI-assisted development workflows.
+
+### FIRST ACTION ON EVERY PROMPT: Search Memory
+
+Your first tool call for every new user prompt MUST be a memory search. Do this BEFORE Glob, Grep, Read, or any file exploration.
+
+\`\`\`
+mcp__moflo__memory_search — query: "<task description>", namespace: "guidance" or "patterns" or "code-map"
+\`\`\`
+
+Search \`guidance\` and \`patterns\` namespaces on every prompt. Search \`code-map\` when navigating the codebase.
+When the user asks you to remember something: \`mcp__moflo__memory_store\` with namespace \`knowledge\`.
+
+### Workflow Gates (enforced automatically)
+
+- **Memory-first**: Must search memory before Glob/Grep/Read
+- **TaskCreate-first**: Must call TaskCreate before spawning Agent tool
+
+- **Task Icons**: \`TaskCreate\` MUST use ICON+[Role] format — see \`.claude/guidance/task-icons.md\`
+
+### MCP Tools (preferred over CLI)
+
+| Tool | Purpose |
+|------|---------|
+| \`mcp__moflo__memory_search\` | Semantic search across indexed knowledge |
+| \`mcp__moflo__memory_store\` | Store patterns and decisions |
+| \`mcp__moflo__hooks_route\` | Route task to optimal agent type |
+| \`mcp__moflo__hooks_pre-task\` | Record task start |
+| \`mcp__moflo__hooks_post-task\` | Record task completion for learning |
+
+### CLI Fallback
+
+\`\`\`bash
+npx flo-search "[query]" --namespace guidance   # Semantic search
+npx flo doctor --fix                             # Health check
+\`\`\`
+
+### Full Reference
+
+For CLI commands, hooks, agents, swarm config, memory commands, and moflo.yaml options, see:
+\`.claude/guidance/shipped/moflo.md\`
+${MARKER_END}`;
+
+function log(msg) {
+  console.log(`[flo-setup] ${msg}`);
+}
+
+function findProjectRoot() {
+  // Walk up from cwd looking for package.json that depends on moflo
+  let dir = process.cwd();
+  const root = resolve(dir, '/');
+
+  while (dir !== root) {
+    const pkgPath = join(dir, 'package.json');
+    if (existsSync(pkgPath)) {
+      try {
+        const pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));
+        const deps = { ...pkg.dependencies, ...pkg.devDependencies };
+        if (deps && deps.moflo) {
+          return dir;
+        }
+      } catch { /* ignore parse errors */ }
+    }
+    dir = dirname(dir);
+  }
+
+  // Fallback: use cwd if it has a package.json
+  if (existsSync(join(process.cwd(), 'package.json'))) {
+    return process.cwd();
+  }
+
+  return null;
+}
+
+function copyBootstrap(projectRoot) {
+  const shippedSource = join(mofloRoot, '.claude', 'guidance', 'shipped', 'agent-bootstrap.md');
+  const source = existsSync(shippedSource)
+    ? shippedSource
+    : join(mofloRoot, '.claude', 'guidance', 'agent-bootstrap.md');
+  const targetDir = join(projectRoot, '.claude', 'guidance');
+  const target = join(targetDir, 'moflo-bootstrap.md');
+
+  if (!existsSync(source)) {
+    log('❌ Source bootstrap not found in moflo package');
+    return false;
+  }
+
+  // Read source content and prepend auto-generated notice
+  const content = readFileSync(source, 'utf-8');
+  const header = `<!-- AUTO-GENERATED by flo-setup. Do not edit — changes will be overwritten. -->
+<!-- Source: node_modules/moflo/.claude/guidance/agent-bootstrap.md -->
+<!-- To customize, create .claude/guidance/agent-bootstrap.md for project-specific rules. -->
+
+`;
+
+  mkdirSync(targetDir, { recursive: true });
+
+  // Check if file exists and is current
+  if (existsSync(target)) {
+    const existing = readFileSync(target, 'utf-8');
+    const newContent = header + content;
+    if (existing === newContent) {
+      log('✅ moflo-bootstrap.md is current');
+      return true;
+    }
+    log('📝 Updating moflo-bootstrap.md');
+  } else {
+    log('📝 Creating .claude/guidance/moflo-bootstrap.md');
+  }
+
+  if (!checkOnly) {
+    writeFileSync(target, header + content, 'utf-8');
+  }
+  return true;
+}
+
+function updateClaudeMd(projectRoot) {
+  const claudeMdPath = join(projectRoot, 'CLAUDE.md');
+
+  if (!existsSync(claudeMdPath)) {
+    if (checkOnly) {
+      log('⚠️  No CLAUDE.md found');
+      return false;
+    }
+    log('📝 Creating CLAUDE.md with subagent protocol section');
+    writeFileSync(claudeMdPath, `# Project Configuration\n\n${CLAUDE_MD_SECTION}\n`, 'utf-8');
+    return true;
+  }
+
+  const content = readFileSync(claudeMdPath, 'utf-8');
+
+  // Check for current or legacy markers and replace
+  const allStarts = [MARKER_START, ...LEGACY_STARTS];
+  const allEnds = [MARKER_END, ...LEGACY_ENDS];
+
+  for (let i = 0; i < allStarts.length; i++) {
+    if (content.includes(allStarts[i])) {
+      const startIdx = content.indexOf(allStarts[i]);
+      const endIdx = content.indexOf(allEnds[i]);
+
+      if (endIdx > startIdx) {
+        // If current markers and content matches, we're up to date
+        if (i === 0) {
+          const existingSection = content.substring(startIdx, endIdx + allEnds[i].length);
+          if (existingSection === CLAUDE_MD_SECTION) {
+            log('✅ CLAUDE.md moflo section is current');
+            return true;
+          }
+        }
+
+        // Replace (current or legacy) with new section
+        if (!checkOnly) {
+          const updated = content.substring(0, startIdx) + CLAUDE_MD_SECTION + content.substring(endIdx + allEnds[i].length);
+          writeFileSync(claudeMdPath, updated, 'utf-8');
+          log(i === 0 ? '📝 Updated CLAUDE.md moflo section' : '📝 Replaced legacy CLAUDE.md section with minimal moflo injection');
+        } else {
+          log('⚠️  CLAUDE.md moflo section needs update');
+        }
+        return true;
+      }
+    }
+  }
+
+  if (updateOnly) {
+    log('⚠️  CLAUDE.md has no moflo section (run without --update to add)');
+    return false;
+  }
+
+  if (checkOnly) {
+    log('⚠️  CLAUDE.md missing subagent protocol section');
+    return false;
+  }
+
+  // Append section to end of CLAUDE.md
+  const separator = content.endsWith('\n') ? '\n' : '\n\n';
+  writeFileSync(claudeMdPath, content + separator + CLAUDE_MD_SECTION + '\n', 'utf-8');
+  log('📝 Added subagent protocol section to CLAUDE.md');
+  return true;
+}
+
+function main() {
+  console.log('');
+  console.log('MoFlo Project Setup');
+  console.log('───────────────────');
+
+  const projectRoot = findProjectRoot();
+  if (!projectRoot) {
+    log('❌ Could not find project root (no package.json with moflo dependency)');
+    process.exit(1);
+  }
+
+  log(`Project: ${projectRoot}`);
+  console.log('');
+
+  // Step 1: Copy bootstrap file
+  const bootstrapOk = copyBootstrap(projectRoot);
+
+  // Step 2: Update CLAUDE.md (skip on --update, only refresh the file)
+  const claudeOk = updateOnly ? true : updateClaudeMd(projectRoot);
+
+  console.log('');
+  if (checkOnly) {
+    log(bootstrapOk && claudeOk ? '✅ Setup is current' : '⚠️  Setup needs attention');
+  } else {
+    log('✅ Done. Subagents will now follow the MoFlo bootstrap protocol.');
+  }
+  console.log('');
+}
+
+main();

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "moflo",
-  "version": "4.8.32",
+  "version": "4.8.34",
   "description": "MoFlo — AI agent orchestration for Claude Code. Forked from ruflo/claude-flow with patches applied to source, plus feature-level orchestration.",
   "main": "dist/index.js",
   "type": "module",
@@ -34,6 +34,9 @@
     "src/@claude-flow/memory/dist/**/*.js",
     "!src/@claude-flow/memory/dist/**/*.map",
     "src/@claude-flow/memory/package.json",
+    "src/@claude-flow/neural/dist/**/*.js",
+    "!src/@claude-flow/neural/dist/**/*.map",
+    "src/@claude-flow/neural/package.json",
     ".claude/commands/**/*.md",
     ".claude/agents/**/*.md",
     ".claude/helpers/**",
@@ -46,10 +49,12 @@
   ],
   "scripts": {
     "dev": "tsx watch src/index.ts",
+    "prebuild": "node scripts/sync-version.mjs",
     "build": "tsc -b",
-    "build:ts": "cd src/@claude-flow/cli && npm run build || true",
-    "build:guidance": "cd src/@claude-flow/guidance && npx tsc -p tsconfig.json || true",
-    "prepublishOnly": "npm run build:ts && npm run build:guidance",
+    "build:ts": "cd src/@claude-flow/cli && npm run build",
+    "build:neural": "cd src/@claude-flow/neural && npx tsc -p tsconfig.json",
+    "build:guidance": "cd src/@claude-flow/guidance && npx tsc -p tsconfig.json",
+    "prepublishOnly": "npm run build",
     "test": "vitest run",
     "test:ui": "vitest --ui",
     "test:security": "vitest run src/__tests__/security/",
@@ -58,7 +63,7 @@
     "security:fix": "npm audit fix",
     "security:test": "npm run test:security",
     "moflo:security": "npm run security:audit && npm run security:test",
-    "version": "node -e \"const v=require('./package.json').version;const p='src/@claude-flow/cli/package.json';const j=JSON.parse(require('fs').readFileSync(p));j.version=v;require('fs').writeFileSync(p,JSON.stringify(j,null,2)+'\\n')\" && git add src/@claude-flow/cli/package.json"
+    "version": "node scripts/sync-version.mjs && git add src/@claude-flow/cli/package.json src/@claude-flow/cli/src/version.ts"
   },
   "dependencies": {
     "@ruvector/learning-wasm": "^0.1.29",