modular-studio 0.2.0

package/dist-server/server/config.d.ts

@@ -0,0 +1,4 @@
+import type { AppConfig } from './types.js';
+export declare function readConfig(): AppConfig;
+export declare function writeConfig(config: AppConfig): void;
+//# sourceMappingURL=config.d.ts.map

package/dist-server/server/config.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../../server/config.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAgB5C,wBAAgB,UAAU,IAAI,SAAS,CAYtC;AAED,wBAAgB,WAAW,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAGnD"}

package/dist-server/server/config.js

@@ -0,0 +1,33 @@
+import { readFileSync, writeFileSync, mkdirSync, existsSync } from 'node:fs';
+import { join } from 'node:path';
+import { homedir } from 'node:os';
+const CONFIG_DIR = join(homedir(), '.modular-studio');
+const CONFIG_PATH = join(CONFIG_DIR, 'config.json');
+const DEFAULT_CONFIG = {
+    providers: [],
+    mcpServers: [],
+};
+function ensureDir() {
+    if (!existsSync(CONFIG_DIR)) {
+        mkdirSync(CONFIG_DIR, { recursive: true });
+    }
+}
+export function readConfig() {
+    ensureDir();
+    if (!existsSync(CONFIG_PATH)) {
+        writeConfig(DEFAULT_CONFIG);
+        return { ...DEFAULT_CONFIG };
+    }
+    try {
+        const raw = readFileSync(CONFIG_PATH, 'utf-8');
+        return JSON.parse(raw);
+    }
+    catch {
+        return { ...DEFAULT_CONFIG };
+    }
+}
+export function writeConfig(config) {
+    ensureDir();
+    writeFileSync(CONFIG_PATH, JSON.stringify(config, null, 2), 'utf-8');
+}
+//# sourceMappingURL=config.js.map

package/dist-server/server/config.js.map

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package/dist-server/server/data/mcp-clients.json

@@ -0,0 +1,5 @@
+{
+  "https://mcp.notion.com/mcp": {
+    "client_id": "vrpnT7WPSCDwtLgd"
+  }
+}

package/dist-server/server/index.d.ts

@@ -0,0 +1,3 @@
+export declare function createApp(): import("express-serve-static-core").Express;
+export declare function startServer(port?: number): import("http").Server<typeof import("http").IncomingMessage, typeof import("http").ServerResponse>;
+//# sourceMappingURL=index.d.ts.map

package/dist-server/server/index.d.ts.map

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package/dist-server/server/index.js

@@ -0,0 +1,174 @@
+import express from 'express';
+import cors from 'cors';
+import { join, dirname } from 'node:path';
+import { fileURLToPath } from 'node:url';
+import { existsSync } from 'node:fs';
+import { readConfig } from './config.js';
+import { mcpManager } from './mcp/manager.js';
+import providerRoutes from './routes/providers.js';
+import mcpRoutes from './routes/mcp.js';
+import llmRoutes from './routes/llm.js';
+import agentSdkRoutes from './routes/agent-sdk.js';
+import knowledgeRoutes from './routes/knowledge.js';
+import claudeConfigRoutes from './routes/claude-config.js';
+import skillsSearchRoutes from './routes/skills-search.js';
+import repoIndexRoutes, { cleanupLegacyGitHubKnowledgeDirs } from './routes/repo-index.js';
+import healthRoutes from './routes/health.js';
+import connectorRoutes from './routes/connectors.js';
+import runtimeRoutes from './routes/runtime.js';
+import worktreeRoutes from './routes/worktrees.js';
+import authCodexRoutes from './routes/auth-codex.js';
+import capabilitiesRoutes from './routes/capabilities.js';
+import qualificationRoutes from './routes/qualification.js';
+import agentRoutes from './routes/agents.js';
+import mcpOAuthRoutes from './routes/mcp-oauth.js';
+import pipelineRoutes from './routes/pipeline.js';
+import embeddingRoutes from './routes/embeddings.js';
+const __dirname = dirname(fileURLToPath(import.meta.url));
+export function createApp() {
+    const app = express();
+    // CORS for dev
+    app.use(cors({
+        origin: [
+            'http://localhost:5173',
+            'http://localhost:5174',
+            'http://localhost:5175',
+            'http://localhost:5176',
+        ],
+    }));
+    app.use(express.json({ limit: '10mb' }));
+    // Basic security headers (lightweight helmet-like)
+    app.use((_req, res, next) => {
+        res.setHeader('X-Content-Type-Options', 'nosniff');
+        res.setHeader('X-Frame-Options', 'DENY');
+        res.setHeader('Referrer-Policy', 'no-referrer');
+        res.setHeader('Permissions-Policy', 'geolocation=(), microphone=(), camera=()');
+        next();
+    });
+    // Simple in-memory rate limiter for API routes
+    const rateWindowMs = 60_000;
+    const maxRequestsPerWindow = 600;
+    const ipHits = new Map();
+    app.use('/api', (req, res, next) => {
+        const ip = req.ip || 'unknown';
+        const now = Date.now();
+        const current = ipHits.get(ip);
+        if (!current || now > current.resetAt) {
+            ipHits.set(ip, { count: 1, resetAt: now + rateWindowMs });
+            return next();
+        }
+        if (current.count >= maxRequestsPerWindow) {
+            return res.status(429).json({ status: 'error', error: 'Rate limit exceeded' });
+        }
+        current.count += 1;
+        ipHits.set(ip, current);
+        next();
+    });
+    // API routes
+    app.use('/api/providers', providerRoutes);
+    app.use('/api/mcp/oauth', mcpOAuthRoutes(4800));
+    app.use('/api/mcp', mcpRoutes);
+    app.use('/api/llm', llmRoutes);
+    app.use('/api/agent-sdk', agentSdkRoutes);
+    app.use('/api/knowledge', knowledgeRoutes);
+    app.use('/api/claude-config', claudeConfigRoutes);
+    app.use('/api/skills', skillsSearchRoutes);
+    app.use('/api/repo', repoIndexRoutes);
+    app.use('/api/health', healthRoutes);
+    app.use('/api/connectors', connectorRoutes);
+    app.use('/api/runtime', runtimeRoutes);
+    app.use('/api/worktrees', worktreeRoutes);
+    app.use('/api/auth/codex', authCodexRoutes);
+    app.use('/api/capabilities', capabilitiesRoutes);
+    app.use('/api/qualification', qualificationRoutes);
+    app.use('/api/agents', agentRoutes);
+    app.use('/api/pipeline', pipelineRoutes);
+    app.use('/api/embeddings', embeddingRoutes);
+    // Global error handler — prevent server crashes
+    app.use((err, _req, res, _next) => {
+        console.error('Unhandled error:', err.message);
+        if (!res.headersSent) {
+            res.status(500).json({ status: 'error', error: err.message });
+        }
+    });
+    // Serve built frontend — check both source layout (../dist) and npm package layout (../../dist)
+    const distPath = existsSync(join(__dirname, '..', 'dist'))
+        ? join(__dirname, '..', 'dist')
+        : join(__dirname, '..', '..', 'dist');
+    if (existsSync(distPath)) {
+        app.use(express.static(distPath));
+        app.get('/{*path}', (_req, res) => {
+            res.sendFile(join(distPath, 'index.html'));
+        });
+    }
+    return app;
+}
+// Load saved MCP servers into manager on startup
+function loadSavedServers() {
+    const config = readConfig();
+    const registeredIds = [];
+    for (const server of config.mcpServers) {
+        mcpManager.addServer(server);
+        registeredIds.push(server.id);
+    }
+    return registeredIds;
+}
+async function autoConnectSavedServers(serverIds) {
+    for (const serverId of serverIds) {
+        const server = mcpManager.getServer(serverId);
+        if (!server)
+            continue;
+        if (server.config.autoConnect === false) {
+            console.log(`[MCP] Skipping auto-connect for "${serverId}" (autoConnect=false)`);
+            continue;
+        }
+        try {
+            const result = await mcpManager.connect(serverId);
+            console.log(`[MCP] Auto-connected "${serverId}" with ${result.tools.length} tool(s)`);
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            console.error(`[MCP] Auto-connect failed for "${serverId}": ${message}`);
+        }
+    }
+}
+export function startServer(port = 4800) {
+    const removedLegacyDirs = cleanupLegacyGitHubKnowledgeDirs();
+    if (removedLegacyDirs > 0) {
+        console.log(`Cleaned ${removedLegacyDirs} legacy GitHub index director${removedLegacyDirs === 1 ? 'y' : 'ies'}`);
+    }
+    const registeredServerIds = loadSavedServers();
+    void autoConnectSavedServers(registeredServerIds);
+    const app = createApp();
+    const server = app.listen(port, () => {
+        const addr = server.address();
+        console.log(`Modular Studio running at http://localhost:${port}`, addr);
+    });
+    server.on('error', (err) => {
+        console.error(`Failed to start server on port ${port}:`, err.message);
+        if (err.code === 'EADDRINUSE') {
+            console.error(`Port ${port} is already in use`);
+        }
+        process.exit(1);
+    });
+    return server;
+}
+// Prevent crashes from unhandled rejections
+process.on('uncaughtException', (err) => {
+    console.error('Uncaught exception:', err.message);
+});
+process.on('unhandledRejection', (err) => {
+    console.error('Unhandled rejection:', err instanceof Error ? err.message : err);
+});
+// Start when run directly via `npm run server` or `tsx server/index.ts`
+// Check URL (Unix) or backslash-encoded URL (Windows) or argv for direct invocation
+const selfUrl = import.meta.url || '';
+const isMainModule = selfUrl.includes('server/index') || selfUrl.includes('server%5Cindex') || selfUrl.includes('server\\index');
+if (isMainModule) {
+    const server = startServer();
+    // Prevent Node from exiting — keep-alive interval + signal handlers
+    const keepAlive = setInterval(() => { }, 1 << 30); // ~12 days
+    process.on('SIGINT', () => { clearInterval(keepAlive); server.close(); process.exit(0); });
+    process.on('SIGTERM', () => { clearInterval(keepAlive); server.close(); process.exit(0); });
+}
+//# sourceMappingURL=index.js.map

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package/dist-server/server/mcp/manager.d.ts

@@ -0,0 +1,47 @@
+import { Client } from '@modelcontextprotocol/sdk/client/index.js';
+import { StdioClientTransport } from '@modelcontextprotocol/sdk/client/stdio.js';
+import type { McpServerConfig } from '../types.js';
+interface McpConnection {
+    config: McpServerConfig;
+    client: Client | null;
+    transport: StdioClientTransport | null;
+    status: 'disconnected' | 'connecting' | 'connected' | 'error';
+    tools: Array<{
+        name: string;
+        description?: string;
+        inputSchema?: unknown;
+    }>;
+    connectedAt: number | null;
+    lastError: string | null;
+}
+export declare class McpManager {
+    private connections;
+    private readonly ALLOWED_MCP_COMMANDS;
+    private readonly DANGEROUS_ENV_VARS;
+    private validateMcpCommand;
+    private validateMcpEnvironment;
+    private normalizeConfig;
+    addServer(config: McpServerConfig): void;
+    removeServer(id: string): void;
+    getServer(id: string): McpConnection | undefined;
+    listServers(): Array<McpServerConfig & {
+        status: string;
+        tools: McpConnection['tools'];
+        lastError: string | null;
+    }>;
+    connect(id: string): Promise<{
+        status: string;
+        tools: McpConnection['tools'];
+    }>;
+    callTool(id: string, toolName: string, args: Record<string, unknown>): Promise<unknown>;
+    disconnect(id: string): Promise<void>;
+    getHealth(id: string): {
+        status: string;
+        tools: McpConnection['tools'];
+        uptime: number | null;
+        lastError: string | null;
+    };
+}
+export declare const mcpManager: McpManager;
+export {};
+//# sourceMappingURL=manager.d.ts.map

package/dist-server/server/mcp/manager.d.ts.map

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package/dist-server/server/mcp/manager.js

@@ -0,0 +1,203 @@
+import { Client } from '@modelcontextprotocol/sdk/client/index.js';
+import { StdioClientTransport } from '@modelcontextprotocol/sdk/client/stdio.js';
+import { StreamableHTTPClientTransport } from '@modelcontextprotocol/sdk/client/streamableHttp.js';
+import { getToken } from '../services/mcpOAuth.js';
+export class McpManager {
+    connections = new Map();
+    // Allowlist of safe MCP executables - SECURITY FIX
+    ALLOWED_MCP_COMMANDS = new Set([
+        'npx', 'node', 'python', 'python3', 'uvx', 'uv', 'deno', 'bun'
+    ]);
+    // Dangerous environment variables to block - SECURITY FIX
+    DANGEROUS_ENV_VARS = new Set([
+        'LD_PRELOAD', 'DYLD_INSERT_LIBRARIES', 'NODE_OPTIONS'
+    ]);
+    validateMcpCommand(command, args = []) {
+        if (!command) {
+            throw new Error('MCP command cannot be empty');
+        }
+        // Extract base command (remove path prefixes)
+        const baseCommand = command.split(/[/\\]/).pop()?.split('.')[0] || '';
+        // Check if command is in allowlist or starts with allowed prefix
+        const isAllowed = this.ALLOWED_MCP_COMMANDS.has(baseCommand) ||
+            Array.from(this.ALLOWED_MCP_COMMANDS).some(allowed => command.startsWith(allowed));
+        if (!isAllowed) {
+            throw new Error(`Unsafe MCP command "${command}". Only allowed: ${Array.from(this.ALLOWED_MCP_COMMANDS).join(', ')}`);
+        }
+        // Basic args validation - prevent obvious injection attempts
+        for (const arg of args) {
+            if (arg.includes('&&') || arg.includes('||') || arg.includes(';') || arg.includes('|')) {
+                throw new Error(`Unsafe argument detected: "${arg}"`);
+            }
+        }
+    }
+    validateMcpEnvironment(env = {}) {
+        for (const [key, value] of Object.entries(env)) {
+            // Block dangerous environment variables
+            if (this.DANGEROUS_ENV_VARS.has(key)) {
+                throw new Error(`Dangerous environment variable not allowed: ${key}`);
+            }
+            // Block NODE_OPTIONS with --require
+            if (key === 'NODE_OPTIONS' && value.includes('--require')) {
+                throw new Error('NODE_OPTIONS with --require not allowed for security');
+            }
+        }
+    }
+    normalizeConfig(config) {
+        return {
+            ...config,
+            args: config.args ?? [],
+            env: config.env ?? {},
+            autoConnect: config.autoConnect ?? true,
+        };
+    }
+    addServer(config) {
+        const normalizedConfig = this.normalizeConfig(config);
+        if (this.connections.has(config.id)) {
+            const existing = this.connections.get(config.id);
+            existing.config = normalizedConfig;
+            return;
+        }
+        this.connections.set(config.id, {
+            config: normalizedConfig,
+            client: null,
+            transport: null,
+            status: 'disconnected',
+            tools: [],
+            connectedAt: null,
+            lastError: null,
+        });
+    }
+    removeServer(id) {
+        this.connections.delete(id);
+    }
+    getServer(id) {
+        return this.connections.get(id);
+    }
+    listServers() {
+        return Array.from(this.connections.values()).map((c) => ({
+            ...c.config,
+            status: c.status,
+            tools: c.tools,
+            lastError: c.lastError,
+        }));
+    }
+    async connect(id) {
+        const conn = this.connections.get(id);
+        if (!conn)
+            throw new Error(`MCP server "${id}" not found`);
+        const transportType = conn.config.type || 'stdio';
+        if (transportType !== 'stdio' && transportType !== 'streamable-http') {
+            conn.status = 'error';
+            conn.lastError = 'Transport type ' + transportType + ' not yet supported. Use stdio or streamable-http.';
+            throw new Error(conn.lastError);
+        }
+        // Disconnect existing if any
+        if (conn.client) {
+            try {
+                await conn.client.close();
+            }
+            catch { /* ignore */ }
+        }
+        conn.status = 'connecting';
+        conn.lastError = null;
+        try {
+            let client;
+            if (transportType === 'streamable-http') {
+                // Remote MCP server via Streamable HTTP
+                const serverUrl = conn.config.url;
+                if (!serverUrl)
+                    throw new Error('No URL configured for streamable-http server');
+                const headers = {};
+                const token = await getToken(serverUrl);
+                if (token) {
+                    headers['Authorization'] = 'Bearer ' + token;
+                }
+                const transport = new StreamableHTTPClientTransport(new URL(serverUrl), { requestInit: { headers } });
+                client = new Client({ name: 'modular-studio', version: '1.0.0' });
+                await client.connect(transport);
+                const { tools } = await client.listTools();
+                conn.client = client;
+                conn.transport = null; // no stdio transport to store
+                conn.status = 'connected';
+                conn.tools = tools.map(t => ({ name: t.name, description: t.description, inputSchema: t.inputSchema }));
+                conn.connectedAt = Date.now();
+                return { status: 'connected', tools: conn.tools };
+            }
+            // Validate MCP server command and environment - SECURITY FIX
+            this.validateMcpCommand(conn.config.command, conn.config.args);
+            this.validateMcpEnvironment(conn.config.env);
+            const transport = new StdioClientTransport({
+                command: conn.config.command,
+                args: conn.config.args,
+                env: { ...process.env, ...conn.config.env },
+            });
+            client = new Client({ name: 'modular-studio', version: '1.0.0' });
+            // Handle process exit
+            transport.onclose = () => {
+                if (conn.status === 'connected') {
+                    conn.status = 'error';
+                    conn.lastError = 'Process exited unexpectedly';
+                    conn.client = null;
+                    conn.transport = null;
+                }
+            };
+            await client.connect(transport);
+            const { tools } = await client.listTools();
+            conn.client = client;
+            conn.transport = transport;
+            conn.status = 'connected';
+            conn.tools = tools.map((t) => ({
+                name: t.name,
+                description: t.description,
+                inputSchema: t.inputSchema,
+            }));
+            conn.connectedAt = Date.now();
+            return { status: 'connected', tools: conn.tools };
+        }
+        catch (err) {
+            conn.status = 'error';
+            conn.lastError = err instanceof Error ? err.message : String(err);
+            throw err;
+        }
+    }
+    async callTool(id, toolName, args) {
+        const conn = this.connections.get(id);
+        if (!conn)
+            throw new Error(`MCP server "${id}" not found`);
+        if (!conn.client || conn.status !== 'connected') {
+            throw new Error(`MCP server "${id}" is not connected`);
+        }
+        const result = await conn.client.callTool({ name: toolName, arguments: args });
+        return result;
+    }
+    async disconnect(id) {
+        const conn = this.connections.get(id);
+        if (!conn)
+            throw new Error(`MCP server "${id}" not found`);
+        if (conn.client) {
+            try {
+                await conn.client.close();
+            }
+            catch { /* ignore */ }
+        }
+        conn.client = null;
+        conn.transport = null;
+        conn.status = 'disconnected';
+        conn.tools = [];
+        conn.connectedAt = null;
+    }
+    getHealth(id) {
+        const conn = this.connections.get(id);
+        if (!conn)
+            throw new Error(`MCP server "${id}" not found`);
+        return {
+            status: conn.status,
+            tools: conn.tools,
+            uptime: conn.connectedAt ? Date.now() - conn.connectedAt : null,
+            lastError: conn.lastError,
+        };
+    }
+}
+export const mcpManager = new McpManager();
+//# sourceMappingURL=manager.js.map

package/dist-server/server/mcp/manager.js.map

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package/dist-server/server/mcp/modular-server.d.ts

@@ -0,0 +1,55 @@
+/**
+ * Modular MCP Server - Universal Context Provider
+ *
+ * Exposes Modular Studio's context engineering pipeline as MCP tools:
+ * - modular_context: Full context engineering pipeline
+ * - modular_tree: Document tree indexing
+ * - modular_classify: Knowledge type classification
+ * - modular_facts: Fact extraction from text
+ * - modular_consolidate: Memory consolidation
+ */
+import { Server } from '@modelcontextprotocol/sdk/server/index.js';
+import { type KnowledgeType } from '../../src/store/knowledgeBase.js';
+import { type BudgetAllocation } from '../../src/services/budgetAllocator.js';
+import { type ExtractedFact } from '../services/factExtractor.js';
+export interface ModularContextInput {
+    sources: Array<{
+        path: string;
+        name: string;
+        type?: KnowledgeType;
+    }>;
+    task: string;
+    tokenBudget?: number;
+}
+export interface ModularContextOutput {
+    context: string;
+    metadata: {
+        totalTokens: number;
+        sources: Array<{
+            name: string;
+            type: KnowledgeType;
+            tokens: number;
+            depth: number;
+        }>;
+        budgetAllocation: BudgetAllocation[];
+        contradictions: number;
+    };
+}
+export interface ConsolidationResult {
+    kept: ExtractedFact[];
+    pruned: ExtractedFact[];
+    merged: Array<{
+        primary: ExtractedFact;
+        merged: ExtractedFact[];
+    }>;
+    promoted: ExtractedFact[];
+}
+/**
+ * Core context engineering pipeline
+ */
+export declare function processModularContext(input: ModularContextInput): Promise<ModularContextOutput>;
+/**
+ * Create and configure the MCP server
+ */
+export declare function createModularServer(): Server;
+//# sourceMappingURL=modular-server.d.ts.map

package/dist-server/server/mcp/modular-server.d.ts.map

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