mirai-graph 1.4.0 → 2.1.0

package/pilots/independent-implementation-004-research-program/graph/relations.json

@@ -1,84 +0,0 @@
-[
-  {
-    "id": "relation.system.graph_assisted_work_research.supports.goal.measure_context_quality",
-    "type": "supports",
-    "source": "system.graph_assisted_work_research",
-    "target": "goal.measure_context_quality",
-    "readiness": "review_ready",
-    "evidence": ["evidence.research_program_brief"],
-    "profile": "project_management"
-  },
-  {
-    "id": "relation.task.define_baseline_protocol.depends_on.goal.measure_context_quality",
-    "type": "depends_on",
-    "source": "task.define_baseline_protocol",
-    "target": "goal.measure_context_quality",
-    "readiness": "accepted",
-    "evidence": ["evidence.research_program_brief"],
-    "profile": "project_management"
-  },
-  {
-    "id": "relation.task.collect_synthetic_result.depends_on.task.define_baseline_protocol",
-    "type": "depends_on",
-    "source": "task.collect_synthetic_result",
-    "target": "task.define_baseline_protocol",
-    "readiness": "review_ready",
-    "evidence": ["evidence.research_program_brief"],
-    "profile": "project_management"
-  },
-  {
-    "id": "relation.evidence.synthetic_result_table.evidences.task.collect_synthetic_result",
-    "type": "evidences",
-    "source": "evidence.synthetic_result_table",
-    "target": "task.collect_synthetic_result",
-    "readiness": "review_ready",
-    "evidence": ["evidence.synthetic_result_table"],
-    "profile": "project_management"
-  },
-  {
-    "id": "relation.risk.overclaiming_synthetic_result.blocks.milestone.preprint_outline_ready",
-    "type": "blocks",
-    "source": "risk.overclaiming_synthetic_result",
-    "target": "milestone.preprint_outline_ready",
-    "readiness": "review_ready",
-    "evidence": ["evidence.research_program_brief"],
-    "profile": "project_management"
-  },
-  {
-    "id": "relation.decision.limit_claim_to_alpha_evidence.blocks.risk.overclaiming_synthetic_result",
-    "type": "blocks",
-    "source": "decision.limit_claim_to_alpha_evidence",
-    "target": "risk.overclaiming_synthetic_result",
-    "readiness": "accepted",
-    "evidence": ["evidence.research_program_brief"],
-    "profile": "project_management"
-  },
-  {
-    "id": "relation.gate.publication_claim_review.governs.decision.limit_claim_to_alpha_evidence",
-    "type": "governs",
-    "source": "gate.publication_claim_review",
-    "target": "decision.limit_claim_to_alpha_evidence",
-    "readiness": "accepted",
-    "evidence": ["evidence.research_program_brief"],
-    "profile": "project_management"
-  },
-  {
-    "id": "relation.milestone.preprint_outline_ready.depends_on.gate.publication_claim_review",
-    "type": "depends_on",
-    "source": "milestone.preprint_outline_ready",
-    "target": "gate.publication_claim_review",
-    "readiness": "review_ready",
-    "evidence": ["evidence.synthetic_result_table"],
-    "profile": "project_management"
-  },
-  {
-    "id": "relation.stakeholder.research_reviewer.related_to.gate.publication_claim_review",
-    "type": "related_to",
-    "source": "stakeholder.research_reviewer",
-    "target": "gate.publication_claim_review",
-    "readiness": "draft",
-    "evidence": ["evidence.research_program_brief"],
-    "profile": "project_management"
-  }
-]
-

package/pilots/independent-implementation-004-research-program/graph-seed.json

@@ -1,76 +0,0 @@
-{
-  "schema_version": "0.1.0",
-  "seed_id": "seed.research_program_pilot",
-  "target_graph_id": "graph.research_program_pilot",
-  "purpose": "Create a public-safe Mirai Graph package for a small research-program workflow.",
-  "target_profile": "profile.project_management",
-  "target_mode": "pilot",
-  "graph_dna": {
-    "purpose": "Keep research questions, evidence, milestones, risks and publication gates connected.",
-    "evolution_vector": "Grow from a small synthetic research workflow into a reproducible evidence package.",
-    "non_negotiable_principles": [
-      "The pilot must remain synthetic and public-safe.",
-      "Evidence must stay separate from scientific proof claims.",
-      "Publication readiness requires explicit review gates."
-    ]
-  },
-  "source_boundaries": {
-    "allowed_sources": [
-      "synthetic research program brief",
-      "public Mirai Graph research docs",
-      "public Mirai Graph project-management profile"
-    ],
-    "excluded_sources": [
-      "private research repository files",
-      "unpublished reviewer notes",
-      "internal handoff text",
-      "customer or employee data",
-      "secrets or credentials"
-    ],
-    "canonical_write_allowed": false
-  },
-  "growth_rules": {
-    "allowed_object_families": [
-      "system",
-      "goal",
-      "task",
-      "decision",
-      "risk",
-      "milestone",
-      "stakeholder",
-      "evidence",
-      "governance_gate"
-    ],
-    "allowed_relation_families": [
-      "depends_on",
-      "blocks",
-      "supports",
-      "evidences",
-      "belongs_to",
-      "governs",
-      "related_to"
-    ],
-    "max_initial_objects": 14,
-    "depth_mode": "standard"
-  },
-  "review_gates": [
-    "human_review_before_canonical_write",
-    "public_safety_before_release",
-    "evidence_review_before_publication_claim",
-    "limitations_review_before_preprint"
-  ],
-  "generated_views": [
-    "research_question_view",
-    "evidence_map",
-    "risk_and_limitations_view",
-    "publication_gate_view",
-    "next_action_view"
-  ],
-  "stop_conditions": [
-    "private_research_data_requested",
-    "scientific_claim_without_evidence_boundary",
-    "publication_ready_without_review_gate",
-    "secret_or_credential_detected"
-  ]
-}
-

package/pilots/independent-implementation-004-research-program/graph.json

@@ -1,37 +0,0 @@
-{
-  "$schema": "https://mirai-graph.dev/schemas/graph-manifest.schema.json",
-  "format": "mirai-graph",
-  "schema_version": "2.0.0",
-  "id": "package.research_program_pilot_004",
-  "aliases": [],
-  "title": "Research Program Pilot 004",
-  "scope": "package",
-  "kind": "graph_package",
-  "owner": "mirai-graph",
-  "profiles": [
-    "project_management"
-  ],
-  "graph": {
-    "root": "graph",
-    "source_of_truth": [
-      "graph"
-    ],
-    "objects": [
-      "graph/objects.json"
-    ],
-    "relations": [
-      "graph/relations.json"
-    ],
-    "schemas": [],
-    "generated": [],
-    "raw_sources": [
-      "README.md"
-    ]
-  },
-  "imports": [],
-  "version": "0.1.0",
-  "conformance_level": "level_1",
-  "description": "A synthetic independent implementation pilot for a governed research-program workflow.",
-  "license": "CC-BY-4.0",
-  "public_safety": "synthetic_public"
-}

package/pilots/independent-implementation-004-research-program/reports/pilot-report.md

@@ -1,50 +0,0 @@
-# Pilot Report: Research Program
-
-Status: public-safe alpha pilot
-
-## Question
-
-Can Mirai Graph model a research-program workflow with evidence, limitations,
-publication gates and anti-overclaiming controls?
-
-## Setup
-
-The pilot uses a synthetic research program for evaluating graph-assisted work.
-The graph connects:
-
-- research system and goal;
-- baseline protocol task;
-- synthetic result evidence;
-- overclaiming risk;
-- claim-limiting decision;
-- publication claim review gate;
-- preprint readiness milestone.
-
-## Result
-
-The package validates against the public `project_management` profile. The graph
-shows how a research workflow can keep evidence, risks, limitations and
-publication gates explicit without claiming that synthetic evidence is
-peer-reviewed proof.
-
-## Evidence Boundary
-
-This pilot demonstrates public profile applicability and validation shape. It
-does not claim scientific effectiveness, external validity, publication
-acceptance or peer-reviewed proof.
-
-## Reproducibility
-
-```bash
-node packages/cli/validate-mirai-graph.js seed pilots/independent-implementation-004-research-program/graph-seed.json
-node packages/cli/validate-mirai-graph.js pilots/independent-implementation-004-research-program
-node packages/cli/validate-mirai-graph.js --markdown pilots/independent-implementation-004-research-program
-```
-
-## Limitations
-
-- The scenario is synthetic.
-- No private research materials are included.
-- The example models research-program control, not detailed scientific method.
-- Evidence remains bounded and does not authorize broad claims.
-

package/pilots/independent-implementation-004-research-program/results/profile-conformance-result.json

@@ -1,30 +0,0 @@
-{
-  "schema_version": "0.1.0",
-  "result_id": "profile_conformance.package.research_program_pilot_004",
-  "checked_at": "2026-06-03",
-  "fixture": "pilots/independent-implementation-004-research-program/",
-  "package_id": "package.research_program_pilot_004",
-  "profile": "project_management",
-  "conformance_level": "level_1",
-  "validator": "packages/cli/validate-mirai-graph.js",
-  "command": "node packages/cli/validate-mirai-graph.js pilots/independent-implementation-004-research-program",
-  "valid": true,
-  "errors": [],
-  "warnings": [],
-  "checks": [
-    "required package, object, relation and gate-result fields",
-    "unique object and relation ids",
-    "relation source and target existence",
-    "relation id consistency",
-    "readiness and gate verdict values",
-    "project_management object-kind conformance",
-    "project_management relation-type conformance",
-    "publication claim boundary represented through risk, decision and gate"
-  ],
-  "claim_supported": "The package follows the declared Mirai Graph profile shape checked by the current validator.",
-  "limitations": [
-    "The pilot is synthetic and does not prove scientific effectiveness.",
-    "The project_management profile models the research workflow structure, not domain-specific research methodology."
-  ]
-}
-

package/pilots/independent-implementation-005-organization-governance/README.md

@@ -1,42 +0,0 @@
-# Independent Implementation Pilot 005: Organization Governance
-
-Status: pilot fixture
-
-## Purpose
-
-This pilot tests whether Mirai Graph can model organization-level governance as a
-public-safe graph: mission, strategy, departments, programs, policies, decision
-rights, risks, controls, metrics, feedback and Kaizen.
-
-## Domain
-
-Synthetic organization governance program.
-
-No private company data, employee records, customer records, internal policy,
-handoff text, runtime trace or credential is used.
-
-## Governance Question
-
-Can a team model cross-department governance so that strategy, decision rights,
-evidence, risks and improvement proposals stay connected before work is
-promoted?
-
-## Files
-
-- `graph-seed.json`
-- `graph.json`
-- `graph/objects.json`
-- `graph/relations.json`
-- `gates/results.json`
-- `results/profile-conformance-result.json`
-- `reports/pilot-report.md`
-
-## Commands
-
-Run from repository root:
-
-```bash
-node packages/cli/validate-mirai-graph.js seed pilots/independent-implementation-005-organization-governance/graph-seed.json
-node packages/cli/validate-mirai-graph.js pilots/independent-implementation-005-organization-governance
-node packages/cli/validate-mirai-graph.js --markdown pilots/independent-implementation-005-organization-governance
-```

package/pilots/independent-implementation-005-organization-governance/gates/results.json

@@ -1,20 +0,0 @@
-[
-  {
-    "id": "gate_result.organization_governance.public_safety",
-    "gate_id": "public_safety_before_release",
-    "target_id": "package.organization_governance_pilot_005",
-    "verdict": "pass",
-    "summary": "The pilot uses synthetic public-safe organization-governance material only.",
-    "reviewed_at": "2026-06-03",
-    "evidence": ["evidence.governance_brief"]
-  },
-  {
-    "id": "gate_result.organization_governance.decision_rights",
-    "gate_id": "decision_right_before_policy_change",
-    "target_id": "policy.evidence_before_promotion",
-    "verdict": "pass_with_notes",
-    "summary": "The graph represents portfolio owner decision rights before cross-department promotion.",
-    "reviewed_at": "2026-06-03",
-    "evidence": ["evidence.governance_brief"]
-  }
-]

package/pilots/independent-implementation-005-organization-governance/graph/objects.json

@@ -1,137 +0,0 @@
-[
-  {
-    "id": "evidence.governance_brief",
-    "kind": "evidence",
-    "title": "Synthetic Governance Brief",
-    "summary": "Public-safe brief for a synthetic organization governance program.",
-    "readiness": "accepted",
-    "evidence": [],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "organization.civic_platform",
-    "kind": "organization",
-    "title": "Civic Platform Organization",
-    "summary": "Synthetic organization used to test organization-scale Mirai Graph governance.",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "mission.trustworthy_service",
-    "kind": "mission",
-    "title": "Trustworthy Service",
-    "summary": "Provide dependable services while keeping decisions auditable.",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "strategy.evidence_led_operations",
-    "kind": "strategy",
-    "title": "Evidence-Led Operations",
-    "summary": "Promote operational changes only when evidence, decision rights and controls are recorded.",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "department.delivery",
-    "kind": "department",
-    "title": "Delivery Department",
-    "summary": "Department responsible for bounded implementation batches.",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "program.service_quality_program",
-    "kind": "program",
-    "title": "Service Quality Program",
-    "summary": "Cross-department program to improve service reliability and evidence coverage.",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "objective.reduce_false_progress",
-    "kind": "objective",
-    "title": "Reduce False Progress",
-    "summary": "Reduce claims that planned or ready work has already been executed.",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "policy.evidence_before_promotion",
-    "kind": "policy",
-    "title": "Evidence Before Promotion",
-    "summary": "A proposal cannot be promoted without evidence and decision-right review.",
-    "readiness": "accepted",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "decision_right.portfolio_owner",
-    "kind": "decision_right",
-    "title": "Portfolio Owner Decision Right",
-    "summary": "Portfolio owner approves changes that affect cross-department priorities.",
-    "readiness": "accepted",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "risk.policy_bypass",
-    "kind": "risk",
-    "title": "Policy Bypass",
-    "summary": "A team may treat generated context or feedback as authorization.",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "control.governance_review",
-    "kind": "control",
-    "title": "Governance Review",
-    "summary": "Review control checks decision rights, evidence and risk before promotion.",
-    "readiness": "accepted",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "metric.evidence_coverage",
-    "kind": "metric",
-    "title": "Evidence Coverage",
-    "summary": "Share of promoted decisions with linked evidence.",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "feedback.review_feedback",
-    "kind": "feedback",
-    "title": "Review Feedback",
-    "summary": "Review feedback can create a proposal but cannot update canonical graph state.",
-    "readiness": "draft",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "kaizen_item.tighten_promotion_gate",
-    "kind": "kaizen_item",
-    "title": "Tighten Promotion Gate",
-    "summary": "Improve the promotion gate when review finds missing evidence or decision rights.",
-    "readiness": "draft",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "governance_gate.promotion_review",
-    "kind": "governance_gate",
-    "title": "Promotion Review Gate",
-    "summary": "Gate before a proposal becomes an approved organizational change.",
-    "readiness": "accepted",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  }
-]

package/pilots/independent-implementation-005-organization-governance/graph/relations.json

@@ -1,110 +0,0 @@
-[
-  {
-    "id": "relation.organization.civic_platform.aligns_with.mission.trustworthy_service",
-    "type": "aligns_with",
-    "source": "organization.civic_platform",
-    "target": "mission.trustworthy_service",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.strategy.evidence_led_operations.aligns_with.mission.trustworthy_service",
-    "type": "aligns_with",
-    "source": "strategy.evidence_led_operations",
-    "target": "mission.trustworthy_service",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.department.delivery.belongs_to.organization.civic_platform",
-    "type": "belongs_to",
-    "source": "department.delivery",
-    "target": "organization.civic_platform",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.program.service_quality_program.belongs_to.department.delivery",
-    "type": "belongs_to",
-    "source": "program.service_quality_program",
-    "target": "department.delivery",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.objective.reduce_false_progress.supports.strategy.evidence_led_operations",
-    "type": "supports",
-    "source": "objective.reduce_false_progress",
-    "target": "strategy.evidence_led_operations",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.policy.evidence_before_promotion.governs.program.service_quality_program",
-    "type": "governs",
-    "source": "policy.evidence_before_promotion",
-    "target": "program.service_quality_program",
-    "readiness": "accepted",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.program.service_quality_program.requires_approval.decision_right.portfolio_owner",
-    "type": "requires_approval",
-    "source": "program.service_quality_program",
-    "target": "decision_right.portfolio_owner",
-    "readiness": "accepted",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.control.governance_review.controls.risk.policy_bypass",
-    "type": "controls",
-    "source": "control.governance_review",
-    "target": "risk.policy_bypass",
-    "readiness": "accepted",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.metric.evidence_coverage.measures.control.governance_review",
-    "type": "measures",
-    "source": "metric.evidence_coverage",
-    "target": "control.governance_review",
-    "readiness": "review_ready",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.feedback.review_feedback.produces_feedback.program.service_quality_program",
-    "type": "produces_feedback",
-    "source": "feedback.review_feedback",
-    "target": "program.service_quality_program",
-    "readiness": "draft",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.kaizen_item.tighten_promotion_gate.improves.control.governance_review",
-    "type": "improves",
-    "source": "kaizen_item.tighten_promotion_gate",
-    "target": "control.governance_review",
-    "readiness": "draft",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  },
-  {
-    "id": "relation.governance_gate.promotion_review.governs.policy.evidence_before_promotion",
-    "type": "governs",
-    "source": "governance_gate.promotion_review",
-    "target": "policy.evidence_before_promotion",
-    "readiness": "accepted",
-    "evidence": ["evidence.governance_brief"],
-    "profile": "organization_governance"
-  }
-]