mindlore 0.6.0 → 0.6.2

package/README.md

@@ -45,12 +45,19 @@ To add your first source:
 ### CLI Commands
 
 ```bash
-npx mindlore health          # 16-point structural health check
-npx mindlore search "query"  # FTS5 keyword search
-npx mindlore index           # Full FTS5 re-index
-npx mindlore quality         # Bulk quality assignment for sources
-npx mindlore backup init     # Git-based backup for ~/.mindlore/
-npx mindlore backup status   # Show backup status + last commit
+npx mindlore                  # Install / upgrade
+npx mindlore --upgrade        # Upgrade only (skip dir creation)
+npx mindlore health           # 16-point structural health check
+npx mindlore doctor           # 7-point runtime validation (Node, DB, hooks, skills)
+npx mindlore perf             # Hook latency report (p50/p95/p99)
+npx mindlore perf --top 10    # Top 10 slowest hook calls
+npx mindlore perf --savings   # Context token savings report
+npx mindlore search "query"   # FTS5 keyword search (knowledge)
+npx mindlore search "query" --sessions  # Search session data (cc-subagent, cc-session)
+npx mindlore index            # Full FTS5 re-index
+npx mindlore quality          # Bulk quality assignment for sources
+npx mindlore backup init      # Git-based backup for ~/.mindlore/
+npx mindlore backup status    # Show backup status + last commit
 npx mindlore obsidian export --vault /path  # Export to Obsidian vault
 npx mindlore obsidian import --vault /path  # Import from Obsidian vault
 npx mindlore episodes list                  # List recent episodes
@@ -114,7 +121,7 @@ Nine directories, each mapping to a frontmatter `type`:
 ├── decisions/      # Decision records
 ├── INDEX.md        # Navigation map (~15 lines)
 ├── SCHEMA.md       # LLM specification
-└── mindlore.db     # FTS5 search database
+└── mindlore.db     # FTS5 search database (mindlore_fts + mindlore_fts_sessions)
 ```
 
 ## Installation
@@ -125,7 +132,7 @@ Nine directories, each mapping to a frontmatter `type`:
 npx mindlore
 ```
 
-Requires: Node.js 20+ (24 supported), `better-sqlite3` ^12 (installed automatically).
+Requires: Node.js 20+ (22, 24 supported), `better-sqlite3` ^12 (installed automatically).
 
 ### Recommended
 
@@ -177,8 +184,8 @@ SESSION START                      DURING SESSION                         SESSIO
 - **Single global store** — `~/.mindlore/` shared across projects; `project` FTS5 column namespaces per `path.basename(cwd)`
 - **Project-scoped search** — results filtered by current project, falls back to all projects if none found
 - **No `.mindlore/`?** — hooks silently skip, zero overhead
-- **FTS5 search** — SQLite full-text search with BM25 ranking, no external services
-- **Hybrid search** — RRF fusion combining FTS5 keyword + sqlite-vec vector results with synonym expansion
+- **FTS5 search** — SQLite full-text search with BM25 ranking, no external services. Knowledge and session data in separate tables for better IDF quality
+- **Hybrid search** — RRF fusion combining FTS5 keyword + sqlite-vec vector results with synonym expansion + category boost
 - **Content-hash dedup** — SHA256 prevents re-indexing unchanged files
 
 ## Daily Usage
@@ -211,12 +218,12 @@ Skills spawn subagents with `[mindlore:SKILL]` markers — the model-router hook
 
 ## Hooks
 
-14 Claude Code lifecycle hooks (v0.5.9):
+14 Claude Code lifecycle hooks (v0.6.1):
 
 | Event | Hook | What it does |
 |-------|------|-------------|
-| SessionStart | session-focus | Injects last delta + INDEX + last 3 episodes + version check |
-| UserPromptSubmit | search | FTS5 search + episodes recall, project-scoped |
+| SessionStart | session-focus | Injects last delta + INDEX + episodes + corrupt DB auto-recovery |
+| UserPromptSubmit | search | FTS5 search + episodes recall, project-scoped + version tokenization |
 | UserPromptSubmit | decision-detector | TR+EN decision signal detection |
 | FileChanged | index | Sync changed files to FTS5 |
 | FileChanged | fts5-sync | Incremental batch re-index |

package/SCHEMA.md

@@ -146,8 +146,9 @@ Discover unexpected connections between sources. Cross-reference analysis.
 ### FTS5 Search (hooks + scripts)
 
 - Database: `.mindlore/mindlore.db`
-- Table: `mindlore_fts` (columns: path, content)
-- Dedup: `file_hashes` table with SHA256 content-hash
+- Table: `mindlore_fts` — knowledge content (sources, domains, analyses, decisions, diary)
+- Table: `mindlore_fts_sessions` — session content (cc-subagent, cc-session) — v0.6.1
+- Dedup: `file_hashes` table with SHA256 content-hash + `table_target` column (v0.6.1)
 - Tokenizer: `unicode61`
 - Max results: 3 per query (BM25 ranking)
 - Hook injects: file path + first 2 headings

package/dist/scripts/cc-session-sync.d.ts

@@ -28,5 +28,6 @@ export interface SessionConversion {
     isSubagent: boolean;
 }
 export declare function convertJsonlToMd(jsonlPath: string, projectName: string): SessionConversion;
+export declare function extractSessionSummary(transcriptMd: string): string;
 export declare function syncSessions(dbPath: string, sessions: SessionFile[], mindloreDir: string): SessionSyncResult;
 //# sourceMappingURL=cc-session-sync.d.ts.map

package/dist/scripts/cc-session-sync.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cc-session-sync.d.ts","sourceRoot":"","sources":["../../scripts/cc-session-sync.ts"],"names":[],"mappings":";AAEA;;;;;;;;GAQG;AAeH,MAAM,WAAW,iBAAiB;IAChC,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAgBD,MAAM,WAAW,WAAW;IAC1B,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,KAAK,EAAE,IAAI,CAAC;CACb;AAED,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,MAAM,GAAG,WAAW,EAAE,CAuDrE;AA2CD,MAAM,WAAW,iBAAiB;IAChC,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,EAAE,MAAM,CAAC;IACvB,UAAU,EAAE,OAAO,CAAC;CACrB;AAED,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,iBAAiB,CAgE1F;AAUD,wBAAgB,qBAAqB,CAAC,YAAY,EAAE,MAAM,GAAG,MAAM,CAsClE;AAaD,wBAAgB,YAAY,CAC1B,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,WAAW,EAAE,EACvB,WAAW,EAAE,MAAM,GAClB,iBAAiB,CAmHnB"}

package/dist/scripts/cc-session-sync.js

@@ -15,6 +15,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.discoverSessionFiles = discoverSessionFiles;
 exports.convertJsonlToMd = convertJsonlToMd;
+exports.extractSessionSummary = extractSessionSummary;
 exports.syncSessions = syncSessions;
 const fs_1 = __importDefault(require("fs"));
 const path_1 = __importDefault(require("path"));
@@ -176,6 +177,47 @@ function convertJsonlToMd(jsonlPath, projectName) {
     const md = frontmatter + mdParts.join('\n');
     return { md, date: meta.date, userCount, assistantCount, isSubagent };
 }
+// ── Session Summary ──────────────────────────────────────────────────
+const DECISION_KEYWORDS = [
+    'karar:', 'ertele', 'seçtik', 'yapma:',
+    'decision:', 'defer', 'chose', 'skip:',
+    'blocker:', 'ertelendi',
+];
+function extractSessionSummary(transcriptMd) {
+    const lines = transcriptMd.split('\n');
+    const userMessages = [];
+    const decisions = [];
+    let inUser = false;
+    for (const line of lines) {
+        if (line.startsWith('## User')) {
+            inUser = true;
+            continue;
+        }
+        if (line.startsWith('## ')) {
+            inUser = false;
+            continue;
+        }
+        if (inUser && line.trim()) {
+            userMessages.push(line.trim());
+            const lower = line.toLowerCase();
+            if (DECISION_KEYWORDS.some(kw => lower.includes(kw))) {
+                decisions.push(line.trim());
+            }
+        }
+    }
+    if (userMessages.length === 0)
+        return '';
+    const firstIntent = userMessages[0]?.slice(0, 100) ?? '';
+    const lastIntent = userMessages[userMessages.length - 1]?.slice(0, 100) ?? '';
+    const parts = [`Intent: ${firstIntent}`];
+    if (lastIntent && lastIntent !== firstIntent) {
+        parts.push(`Son: ${lastIntent}`);
+    }
+    if (decisions.length > 0) {
+        parts.push(`Kararlar: ${decisions.slice(0, 5).join('; ')}`);
+    }
+    return parts.join(' | ');
+}
 // ── Sync ──────────────────────────────────────────────────────────────
 function sessionShortId(sessionId) {
     return sessionId.startsWith('agent-') ? sessionId.slice(-8) : sessionId.substring(0, 8);
@@ -232,6 +274,19 @@ function syncSessions(dbPath, sessions, mindloreDir) {
             project: slug,
         });
         upsertHash.run(destPath, hash, nowIso, category);
+        // Session summary injection (#9)
+        if (!isSubagent) {
+            try {
+                const sessionSummary = extractSessionSummary(md);
+                if (sessionSummary) {
+                    const epSlug = `session-summary-${sessionDate}-${shortId}`;
+                    const shortSummary = sessionSummary.slice(0, 300);
+                    db.prepare(`INSERT OR REPLACE INTO episodes (id, kind, scope, project, summary, session_summary, created_at)
+             VALUES (?, 'session-summary', 'project', ?, ?, ?, ?)`).run(epSlug, slug, shortSummary, sessionSummary, nowIso);
+                }
+            }
+            catch { /* session_summary column may not exist */ }
+        }
         result.synced++;
     });
     for (const session of sessions) {

package/dist/scripts/cc-session-sync.js.map

@@ -1 +1 @@
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package/dist/scripts/fetch-raw.js

@@ -16,6 +16,30 @@ function validateUrl(raw) {
     return u;
 }
 function slugFromUrl(url) {
+    const parsed = new URL(url);
+    // GitHub repo: owner/repo → repo slug
+    const ghMatch = parsed.pathname.match(/^\/([^/]+)\/([^/]+)\/?$/);
+    if (parsed.hostname === 'github.com' && ghMatch) {
+        return (ghMatch[2] ?? '').replace(/\.git$/, '').toLowerCase();
+    }
+    // Strip common noise from pathname
+    const segments = parsed.pathname
+        .replace(/\/$/, '')
+        .split('/')
+        .filter(s => s && !['index.html', 'index.htm', 'README.md'].includes(s));
+    if (segments.length > 0) {
+        // Take last 2 meaningful segments max
+        const tail = segments.slice(-2).join('-');
+        const slug = tail
+            .replace(/\.[^.]+$/, '') // strip extension
+            .replace(/[^a-zA-Z0-9-]/g, '-') // non-alphanumeric → dash
+            .replace(/-{2,}/g, '-') // collapse dashes
+            .replace(/^-|-$/g, '') // trim dashes
+            .toLowerCase();
+        if (slug.length >= 3)
+            return slug;
+    }
+    // Fallback: hash (only if URL has no useful path)
     return crypto_1.default.createHash('sha256').update(url).digest('hex').slice(0, 12);
 }
 function fetchGitHubReadme(url) {
@@ -79,8 +103,20 @@ function generateFrontmatter(url, slug, content) {
         '',
     ].join('\n');
 }
+function findExistingFile(outDir, slug) {
+    if (!fs_1.default.existsSync(outDir))
+        return null;
+    const files = fs_1.default.readdirSync(outDir).filter(f => f.endsWith(`-${slug}.md`));
+    if (files.length === 0)
+        return null;
+    files.sort();
+    const latest = files[files.length - 1];
+    return latest ? path_1.default.join(outDir, latest) : null;
+}
+const CACHE_TTL_MS = 24 * 60 * 60 * 1000;
 function main() {
     const args = process.argv.slice(2);
+    const forceFlag = args.includes('--force');
     const outDirFlag = args.indexOf('--out-dir');
     const skipIndices = new Set();
     if (outDirFlag >= 0) {
@@ -93,11 +129,22 @@ function main() {
         ? args[outDirFlag + 1]
         : path_1.default.join(process.env.MINDLORE_HOME ?? path_1.default.join(os_1.default.homedir(), '.mindlore'), 'raw');
     if (!url) {
-        console.error('Usage: node fetch-raw.js <URL> [--out-dir <path>]');
+        console.error('Usage: node fetch-raw.js <URL> [--out-dir <path>] [--force]');
         process.exit(1);
     }
     const parsedUrl = validateUrl(url);
     const safeUrl = parsedUrl.href;
+    const slug = slugFromUrl(safeUrl);
+    let cachedPath = findExistingFile(outDir, slug);
+    if (!forceFlag && cachedPath) {
+        const stat = fs_1.default.statSync(cachedPath);
+        const ageMs = Date.now() - stat.mtimeMs;
+        if (ageMs < CACHE_TTL_MS) {
+            const hoursAgo = Math.round(ageMs / (60 * 60 * 1000));
+            console.log(JSON.stringify({ cached: true, file: cachedPath, hours_ago: hoursAgo }));
+            return;
+        }
+    }
     let content = null;
     let method = 'curl';
     if (parsedUrl.hostname === 'github.com' || parsedUrl.hostname.endsWith('.github.com')) {
@@ -117,9 +164,22 @@ function main() {
         console.error(JSON.stringify({ error: 'All fetch methods failed', url: safeUrl }));
         process.exit(1);
     }
-    const slug = slugFromUrl(safeUrl);
     const frontmatter = generateFrontmatter(safeUrl, slug, content);
     const fullContent = frontmatter + content;
+    const newHash = crypto_1.default.createHash('sha256').update(content).digest('hex');
+    if (!cachedPath)
+        cachedPath = findExistingFile(outDir, slug);
+    if (cachedPath && !forceFlag) {
+        const oldContent = fs_1.default.readFileSync(cachedPath, 'utf8');
+        const bodyStart = oldContent.indexOf('---', 4);
+        const oldBody = bodyStart > 0 ? oldContent.slice(bodyStart + 3).trim() : oldContent;
+        const oldHash = crypto_1.default.createHash('sha256').update(oldBody).digest('hex');
+        if (newHash === oldHash) {
+            fs_1.default.utimesSync(cachedPath, new Date(), new Date());
+            console.log(JSON.stringify({ cached: true, file: cachedPath, reason: 'content_unchanged' }));
+            return;
+        }
+    }
     fs_1.default.mkdirSync(outDir, { recursive: true });
     const fileName = `${new Date().toISOString().split('T')[0]}-${slug}.md`;
     const filePath = path_1.default.join(outDir, fileName);

package/dist/scripts/fetch-raw.js.map

@@ -1 +1 @@
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package/dist/scripts/init.js

@@ -19,10 +19,33 @@ const child_process_1 = require("child_process");
 const constants_js_1 = require("./lib/constants.js");
 const db_helpers_js_1 = require("./lib/db-helpers.js");
 const safe_parse_js_1 = require("./lib/safe-parse.js");
+const schema_version_js_1 = require("./lib/schema-version.js");
+const migrations_v062_js_1 = require("./lib/migrations-v062.js");
 // eslint-disable-next-line @typescript-eslint/no-unsafe-type-assertion -- dynamic CJS require, typed by mindlore-common.d.cts
 const { SQL_FTS_CREATE, ensureEpisodesTable: ensureEpisodesTableCjs } = require((0, constants_js_1.resolveHookCommon)(__dirname));
 const TEMPLATE_FILES = ['INDEX.md', 'log.md'];
 // ── Helpers ────────────────────────────────────────────────────────────
+function mergeDefaults(target, defaults) {
+    const result = { ...target };
+    let changed = false;
+    for (const [key, defaultValue] of Object.entries(defaults)) {
+        if (!(key in result) || result[key] === undefined || result[key] === null) {
+            result[key] = defaultValue;
+            changed = true;
+        }
+        else if (typeof result[key] === 'object' && result[key] !== null && !Array.isArray(result[key]) &&
+            typeof defaultValue === 'object' && defaultValue !== null && !Array.isArray(defaultValue)) {
+            /* eslint-disable @typescript-eslint/no-unsafe-type-assertion -- narrowed by typeof+null+array checks above */
+            const nested = mergeDefaults(result[key], defaultValue);
+            /* eslint-enable @typescript-eslint/no-unsafe-type-assertion */
+            if (nested.changed) {
+                result[key] = nested.result;
+                changed = true;
+            }
+        }
+    }
+    return { result, changed };
+}
 function resolvePackageRoot() {
     // When compiled to dist/scripts/, go up two levels to reach package root
     // When running as .ts (ts-jest), go up one level
@@ -142,6 +165,8 @@ function createDatabase(baseDir) {
         // Idempotent: ensure episodes table on pre-v0.4 databases
         const dbEp = new DatabaseCtor(dbPath);
         ensureEpisodesTableCjs(dbEp);
+        (0, schema_version_js_1.ensureSchemaTable)(dbEp);
+        (0, schema_version_js_1.runMigrations)(dbEp, migrations_v062_js_1.V062_MIGRATIONS);
         dbEp.close();
         return migrated;
     }
@@ -157,6 +182,9 @@ function createDatabase(baseDir) {
   `);
     // Idempotent: pre-v0.4 installs won't have this table
     ensureEpisodesTableCjs(db);
+    // v0.6.2 migrations (raw_metadata + session_summary)
+    (0, schema_version_js_1.ensureSchemaTable)(db);
+    (0, schema_version_js_1.runMigrations)(db, migrations_v062_js_1.V062_MIGRATIONS);
     db.close();
     return true;
 }
@@ -340,50 +368,16 @@ function ensureConfig(baseDir, packageRoot) {
         config.models = { ...constants_js_1.DEFAULT_MODELS };
         changed = true;
     }
-    // v0.5.0: merge new fields from template if missing
+    // Merge missing fields from template (handles top-level + nested objects)
     if (fs_1.default.existsSync(configSrc)) {
         const template = (0, safe_parse_js_1.readJsonFile)(configSrc);
-        if (!config.synonyms && template.synonyms) {
-            config.synonyms = template.synonyms;
-            changed = true;
-        }
-        if (!config.hybrid && template.hybrid) {
-            config.hybrid = template.hybrid;
-            changed = true;
-        }
-        // Backfill tokenBudget from template for pre-v0.5.1 configs
-        if (!config.tokenBudget && template.tokenBudget) {
-            config.tokenBudget = template.tokenBudget;
-            changed = true;
-        }
-        // Backfill backup from template for pre-v0.5.4 configs
-        if (!config.backup && template.backup) {
-            config.backup = template.backup;
+        /* eslint-disable @typescript-eslint/no-unsafe-type-assertion -- MindloreConfig is a plain object, safe to cast */
+        const { result: merged, changed: mergeChanged } = mergeDefaults(config, template);
+        /* eslint-enable @typescript-eslint/no-unsafe-type-assertion */
+        if (mergeChanged) {
+            Object.assign(config, merged);
             changed = true;
         }
-        // Backfill reminders from template for pre-v0.5.4 configs
-        if (!config.reminders && template.reminders) {
-            config.reminders = template.reminders;
-            changed = true;
-        }
-        // Merge nested session_focus keys
-        if (typeof config.session_focus === 'object' && config.session_focus !== null
-            && typeof template.session_focus === 'object' && template.session_focus !== null) {
-            const merged = (0, safe_parse_js_1.parseJsonObject)(JSON.stringify(template.session_focus)); // lint-safe cast
-            const existing = (0, safe_parse_js_1.parseJsonObject)(JSON.stringify(config.session_focus)); // defensive copy
-            let sfChanged = false;
-            for (const subKey of Object.keys(merged)) {
-                if (!(subKey in existing)) {
-                    existing[subKey] = merged[subKey];
-                    sfChanged = true;
-                }
-            }
-            if (sfChanged) {
-                config.session_focus = existing;
-                changed = true;
-            }
-        }
-        // Update version to match template
         if (config.version !== template.version) {
             config.version = template.version;
             changed = true;
@@ -403,6 +397,11 @@ function main() {
         require('./uninstall.js');
         return;
     }
+    if (command === 'upgrade') {
+        process.argv = [...process.argv.slice(0, 2), 'init', '--upgrade'];
+        main();
+        return;
+    }
     // CLI subcommands — delegate to dist scripts
     const cliCommands = {
         health: { script: './mindlore-health-check.js', passArgs: false },
@@ -443,6 +442,7 @@ function main() {
         console.log('       npx mindlore memory-sync');
         console.log('       npx mindlore fetch-raw <url>');
         console.log('       npx mindlore daemon start|stop|status');
+        console.log('       npx mindlore upgrade');
         process.exit(1);
     }
     const isRecommended = args.includes('--recommended');
@@ -450,7 +450,8 @@ function main() {
     // Resolution order: MINDLORE_HOME env var > ~/.mindlore/ (global default).
     // Project-local .mindlore/ was removed in v0.3.3 and is migrated to .mindlore.bak/ below.
     const baseDir = constants_js_1.GLOBAL_MINDLORE_DIR;
-    console.log(`\n  Mindlore — AI-native knowledge system [global (~/.mindlore/)]\n`);
+    const isUpgrade = process.argv.includes('--upgrade');
+    console.log(`\n  Mindlore — AI-native knowledge system [${isUpgrade ? 'upgrade' : 'global'} (~/.mindlore/)]\n`);
     // v0.3.3 Migration: rename existing project .mindlore/ → .mindlore.bak/
     const projectMindlore = path_1.default.join(process.cwd(), constants_js_1.MINDLORE_DIR);
     if (fs_1.default.existsSync(projectMindlore) && projectMindlore !== baseDir) {
@@ -463,12 +464,14 @@ function main() {
             (0, constants_js_1.log)('Project .mindlore/ exists — .mindlore.bak/ already present, skipping migration');
         }
     }
-    // Step 1: Directories
-    const dirsCreated = createDirectories(baseDir);
-    (0, constants_js_1.log)(dirsCreated > 0
-        ? `Created ${dirsCreated} directories in ${constants_js_1.MINDLORE_DIR}/`
-        : 'All directories already exist');
-    // Step 2: Templates
+    // Step 1: Directories (skip on upgrade — dirs already exist)
+    if (!isUpgrade) {
+        const dirsCreated = createDirectories(baseDir);
+        (0, constants_js_1.log)(dirsCreated > 0
+            ? `Created ${dirsCreated} directories in ${constants_js_1.MINDLORE_DIR}/`
+            : 'All directories already exist');
+    }
+    // Step 2: Templates (always run — may have new templates)
     const filesCopied = copyTemplates(baseDir, packageRoot);
     (0, constants_js_1.log)(filesCopied > 0
         ? `Copied ${filesCopied} template files`
@@ -589,7 +592,49 @@ function main() {
     fs_1.default.writeFileSync(versionPath, packageJson.version, 'utf8');
     fs_1.default.writeFileSync(pkgVersionPath, packageJson.version, 'utf8');
     (0, constants_js_1.log)(`Version: ${packageJson.version}`);
+    // Step 12: Register agents (v0.6.1)
+    const agentsAdded = registerAgents(packageRoot);
+    if (agentsAdded > 0) {
+        (0, constants_js_1.log)(`Registered ${agentsAdded} agents in ~/.claude/agents/`);
+    }
+    // Step 13: Auto-doctor (v0.6.1)
+    runDoctor(packageRoot);
     console.log('\n  Done! Start with: /mindlore-ingest\n');
 }
+function registerAgents(packageRoot) {
+    const agentsDir = path_1.default.join(packageRoot, 'agents');
+    if (!fs_1.default.existsSync(agentsDir))
+        return 0;
+    const targetDir = path_1.default.join((0, constants_js_1.homedir)(), '.claude', 'agents');
+    ensureDir(targetDir);
+    let copied = 0;
+    for (const file of fs_1.default.readdirSync(agentsDir)) {
+        const src = path_1.default.join(agentsDir, file);
+        const dest = path_1.default.join(targetDir, file);
+        if (!fs_1.default.statSync(src).isFile())
+            continue;
+        if (fs_1.default.existsSync(dest)) {
+            const srcStat = fs_1.default.statSync(src);
+            const destStat = fs_1.default.statSync(dest);
+            if (srcStat.size === destStat.size && srcStat.mtimeMs <= destStat.mtimeMs)
+                continue;
+        }
+        fs_1.default.copyFileSync(src, dest);
+        copied++;
+    }
+    return copied;
+}
+function runDoctor(packageRoot) {
+    try {
+        const doctorScript = path_1.default.join(packageRoot, 'dist', 'scripts', 'mindlore-doctor.js');
+        if (fs_1.default.existsSync(doctorScript)) {
+            const { execFileSync } = require('child_process');
+            execFileSync(process.execPath, [doctorScript], {
+                stdio: 'inherit', timeout: 10000, windowsHide: true,
+            });
+        }
+    }
+    catch { /* doctor failure is non-blocking */ }
+}
 main();
 //# sourceMappingURL=init.js.map