mindgraph-mcp 0.16.0 → 0.18.0

package/dist/index.js

@@ -94,6 +94,24 @@ var import_promises = require("fs/promises");
 var import_node_os2 = require("os");
 var import_node_path2 = require("path");
 var import_node_crypto2 = require("crypto");
+var UnknownRepositoryError = class extends Error {
+  constructor(repo) {
+    super(
+      `unknown repository "${repo}": not declared in .mindgraph/workspace.json, not the current repository, and no such path exists`
+    );
+    this.repo = repo;
+    this.name = "UnknownRepositoryError";
+  }
+  repo;
+};
+function invocationCwd(args) {
+  const context = args.invocation_context;
+  if (context && typeof context === "object" && !Array.isArray(context)) {
+    const cwd = context.cwd;
+    if (typeof cwd === "string" && cwd) return cwd;
+  }
+  return process.cwd();
+}
 function unavailabilityCaveats(reason, message) {
   const caveats = [message || "codegraph status failed"];
   if (reason === "absent") {
@@ -106,14 +124,14 @@ function unavailabilityCaveats(reason, message) {
 var DEFAULT_TIMEOUT_MS = 5e3;
 var DEFAULT_STATUS_TTL_MS = 6e4;
 var MAX_OUTPUT_BYTES = 5 * 1024 * 1024;
-function normalizePath(path3) {
-  return path3.replaceAll("\\", "/").replace(/^\.\//, "");
+function normalizePath(path5) {
+  return path5.replaceAll("\\", "/").replace(/^\.\//, "");
 }
 function normalizeSignature(signature) {
   return signature.replace(/\s+/g, " ").trim();
 }
-function languageFromPath(path3) {
-  const extension = (0, import_node_path2.extname)(path3).toLowerCase();
+function languageFromPath(path5) {
+  const extension = (0, import_node_path2.extname)(path5).toLowerCase();
   return {
     ".c": "c",
     ".cc": "cpp",
@@ -281,7 +299,26 @@ var CodegraphAdapter = class {
         selected.spaceUid
       ) : selected;
     }
-    const requestedRoot = repo || this.env.MINDGRAPH_REPO_ROOT || this.cwd;
+    if (repo) {
+      const requestedPath = await (0, import_promises.realpath)((0, import_node_path2.resolve)(this.cwd, repo)).catch(
+        () => (0, import_node_path2.resolve)(this.cwd, repo)
+      );
+      if (!(0, import_node_fs2.existsSync)(requestedPath)) {
+        const current = await this.currentRepository(fallbackSpaceUid);
+        if (current.repoId === repo) return current;
+        throw new UnknownRepositoryError(repo);
+      }
+      const repoRoot = await this.gitRoot(requestedPath) ?? requestedPath;
+      return this.resolveRepositoryIdentity(
+        repoRoot,
+        this.env.MINDGRAPH_REPO_ID,
+        this.env.MINDGRAPH_CODE_SPACE_UID || fallbackSpaceUid
+      );
+    }
+    return this.currentRepository(fallbackSpaceUid);
+  }
+  async currentRepository(fallbackSpaceUid) {
+    const requestedRoot = this.env.MINDGRAPH_REPO_ROOT || this.cwd;
     const requestedPath = await (0, import_promises.realpath)((0, import_node_path2.resolve)(this.cwd, requestedRoot)).catch(
       () => (0, import_node_path2.resolve)(this.cwd, requestedRoot)
     );
@@ -371,6 +408,14 @@ var CodegraphAdapter = class {
     ).catch(() => "");
     return raw.trim() ? (0, import_node_path2.resolve)(start, raw.trim()) : void 0;
   }
+  /** Why the workspace map yielded no repositories — for callers that were
+   * explicitly asked to fan out and would otherwise return silently empty. */
+  workspaceDiagnostic() {
+    if (!this.workspaceFile || !(0, import_node_fs2.existsSync)(this.workspaceFile)) {
+      return "no .mindgraph/workspace.json was found between the working directory and the filesystem root";
+    }
+    return `${this.workspaceFile} is malformed or declares no repositories`;
+  }
   async availability(repository) {
     const cached = this.statusCache.get(repository.repoRoot);
     if (cached && cached.expiresAt > this.now()) return cached.availability;
@@ -777,20 +822,20 @@ function codeRefIdentityKey(ref) {
 
 // src/code-tool.ts
 var ok = (data) => ({
-  content: [{ type: "text", text: JSON.stringify(data, null, 2) }]
+  content: [{ type: "text", text: JSON.stringify(data) }]
 });
 var err = (code, message, details) => ({
   content: [
     {
       type: "text",
-      text: JSON.stringify({ error: message, code, details }, null, 2)
+      text: JSON.stringify({ error: message, code, details })
     }
   ],
   isError: true
 });
 var CODE_TOOL = {
   name: "mindgraph_code",
-  description: "Resolve typed code references through the local codegraph index and join them to persistent MindGraph memory/work. anchor creates exact repository/code anchors; recall reads attached graph context; expand reads callers/callees; affected reads impact for a code ref or Task/Execution. Ambiguous refs return candidates without writing.",
+  description: "Resolve typed code references through the local codegraph index and join them to persistent MindGraph memory/work. anchor creates exact repository/code anchors; recall reads attached graph context; expand reads callers/callees; affected reads impact for a code ref or Task/Execution. Ambiguous refs return candidates without writing. Refs with a path route to the repository defining that file (nearest declared root in .mindgraph/workspace.json); bare symbols resolve against the current repository only \u2014 pass path or repo to target a sibling.",
   inputSchema: {
     type: "object",
     properties: {
@@ -832,7 +877,7 @@ var CODE_TOOL = {
       },
       repo_space_uid: {
         type: "string",
-        description: "Writable shared Project/repository Space for new anchors"
+        description: "Writable shared Project/repository Space for new anchors (anchor requires this, a workspace space_uid, or MINDGRAPH_CODE_SPACE_UID)"
       },
       task_uid: { type: "string" },
       execution_uid: { type: "string" },
@@ -848,13 +893,13 @@ var CODE_TOOL = {
     openWorldHint: true
   }
 };
-async function handleCodeTool(client2, args, adapter = new CodegraphAdapter()) {
+async function handleCodeTool(client2, args, adapter = new CodegraphAdapter({ cwd: invocationCwd(args) })) {
   const codeClient = client2;
   const action = args.action;
   const refs = Array.isArray(args.code_refs) ? args.code_refs : [];
   const anchorUids = Array.isArray(args.anchor_uids) ? args.anchor_uids : [];
   const agentId = typeof args.agent_id === "string" ? args.agent_id : "mcp";
-  const fallbackSpaceUid = typeof args.repo_space_uid === "string" ? args.repo_space_uid : `space:agent:${agentId}`;
+  const fallbackSpaceUid = typeof args.repo_space_uid === "string" ? args.repo_space_uid : void 0;
   const options = {
     repo: typeof args.repo === "string" ? args.repo : void 0,
     fallbackSpaceUid
@@ -978,6 +1023,7 @@ async function handleCodeTool(client2, args, adapter = new CodegraphAdapter()) {
         const targetUid = typeof args.task_uid === "string" ? args.task_uid : typeof args.execution_uid === "string" ? args.execution_uid : void 0;
         let graphContext;
         const graphRefs = [];
+        let unavailableRepositories = [];
         if (targetUid) {
           graphContext = await codeClient.traverse({
             action: "neighborhood",
@@ -985,9 +1031,13 @@ async function handleCodeTool(client2, args, adapter = new CodegraphAdapter()) {
             depth: 2,
             max_nodes: 50
           });
-          graphRefs.push(
-            ...await codeRefsFromGraphContext(codeClient, adapter, graphContext)
+          const fromGraph = await codeRefsFromGraphContext(
+            codeClient,
+            adapter,
+            graphContext
           );
+          graphRefs.push(...fromGraph.refs);
+          unavailableRepositories = fromGraph.unavailable;
         }
         if (refs.length > 0 || anchorUids.length > 0) {
           const target = await resolveSingleTarget(
@@ -1006,7 +1056,8 @@ async function handleCodeTool(client2, args, adapter = new CodegraphAdapter()) {
             target_uid: targetUid,
             graph_context: graphContext,
             affected: [],
-            degradation: "no materialized code anchors were attached"
+            degradation: unavailableRepositories.length > 0 ? `attached code anchors reference repositories unavailable here: ${unavailableRepositories.join(", ")}` : "no materialized code anchors were attached",
+            ...unavailableRepositories.length > 0 ? { unavailable_repositories: unavailableRepositories } : {}
           });
         }
         const impacts = await Promise.all(
@@ -1023,13 +1074,17 @@ async function handleCodeTool(client2, args, adapter = new CodegraphAdapter()) {
           target_uid: targetUid,
           graph_context: graphContext,
           impacts,
-          materialized: joined
+          materialized: joined,
+          ...unavailableRepositories.length > 0 ? { unavailable_repositories: unavailableRepositories } : {}
         });
       }
       default:
         return err("unknown_action", `unknown mindgraph_code action: ${action}`);
     }
   } catch (cause) {
+    if (cause instanceof UnknownRepositoryError) {
+      return err("unknown_repository", cause.message);
+    }
     return err("code_tool_failed", errorDetail(cause));
   }
 }
@@ -1055,7 +1110,10 @@ async function attachCodeRefsToToolResult(client2, result, args, adapter) {
       code_refs: args.code_refs,
       repo: args.repo,
       repo_space_uid: args.repo_space_uid,
-      agent_id: args.agent_id
+      agent_id: args.agent_id,
+      // Keeps the default adapter anchored to the live session directory
+      // rather than wherever the MCP server process was launched.
+      invocation_context: args.invocation_context
     },
     adapter
   );
@@ -1065,17 +1123,33 @@ async function attachCodeRefsToToolResult(client2, result, args, adapter) {
     const anchorUids = (anchors.anchors ?? []).flatMap(
       (anchor) => anchor.uid ? [anchor.uid] : []
     );
+    const relateFailures = [];
     for (const targetUid of targetUids) {
       for (const anchorUid of anchorUids) {
-        await codeClient.entity({
-          action: "relate",
-          source_uid: targetUid,
-          target_uid: anchorUid,
-          edge_type: args.action === "lesson" ? "ABOUT" : "RELEVANT_TO",
-          agent_id: args.agent_id
-        });
+        try {
+          await codeClient.entity({
+            action: "relate",
+            source_uid: targetUid,
+            target_uid: anchorUid,
+            edge_type: args.action === "lesson" ? "ABOUT" : "RELEVANT_TO",
+            agent_id: args.agent_id
+          });
+        } catch (cause) {
+          relateFailures.push(
+            `${targetUid} -> ${anchorUid}: ${errorDetail(cause)}`
+          );
+        }
       }
     }
+    if (relateFailures.length > 0) {
+      return ok({
+        result: original,
+        code_anchors: {
+          ...anchors,
+          caveat: `anchors written, but ${relateFailures.length} relate edge(s) failed: ${relateFailures.join("; ")}`
+        }
+      });
+    }
   }
   return ok({ result: original, code_anchors: anchors });
 }
@@ -1148,16 +1222,34 @@ async function codeRefFromAnchor(client2, adapter, uid) {
   if (!attributes || typeof attributes !== "object") return void 0;
   const codeRef = attributes.code_ref;
   if (!isStoredCodeRef(codeRef)) return void 0;
-  const repository = await adapter.resolveRepository(codeRef.repoId);
-  return { ...codeRef, repoRoot: repository.repoRoot };
+  try {
+    const repository = await adapter.resolveRepository(codeRef.repoId);
+    return { ref: { ...codeRef, repoRoot: repository.repoRoot } };
+  } catch (cause) {
+    if (cause instanceof UnknownRepositoryError) {
+      return { missingRepo: codeRef.repoId };
+    }
+    throw cause;
+  }
 }
 async function resolveSingleTarget(client2, adapter, refs, anchorUids, options) {
   if (refs.length > 1 || anchorUids.length > 1) {
     return { error: err("ambiguous_target", "expand/affected accepts exactly one code target") };
   }
   if (anchorUids.length === 1) {
-    const ref = await codeRefFromAnchor(client2, adapter, anchorUids[0]);
-    return ref ? { ref } : { error: err("invalid_anchor", "anchor UID does not contain a typed code_ref") };
+    const outcome = await codeRefFromAnchor(client2, adapter, anchorUids[0]);
+    if (!outcome) {
+      return { error: err("invalid_anchor", "anchor UID does not contain a typed code_ref") };
+    }
+    if ("missingRepo" in outcome) {
+      return {
+        error: err(
+          "repository_unavailable",
+          `repository ${outcome.missingRepo} is not checked out here or declared in .mindgraph/workspace.json; expand/affected need its local index`
+        )
+      };
+    }
+    return { ref: outcome.ref };
   }
   if (refs.length !== 1) {
     return { error: err("missing_code_ref", "one code_ref or anchor_uid is required") };
@@ -1196,7 +1288,7 @@ async function joinMaterialized(client2, refs, agentId, limit) {
 async function codeRefsFromGraphContext(client2, adapter, context) {
   const uids = /* @__PURE__ */ new Set();
   collectUids(context, uids);
-  if (uids.size === 0) return [];
+  if (uids.size === 0) return { refs: [], unavailable: [] };
   const nodes = client2.getNodesBatch ? await client2.getNodesBatch([...uids]) : await Promise.all([...uids].map((uid) => client2.getNode(uid).catch(() => void 0)));
   const stored = nodes.flatMap((node) => {
     if (!node) return [];
@@ -1205,12 +1297,21 @@ async function codeRefsFromGraphContext(client2, adapter, context) {
     const codeRef = attributes.code_ref;
     return isStoredCodeRef(codeRef) ? [codeRef] : [];
   });
-  return Promise.all(
-    stored.map(async (ref) => {
+  const refs = [];
+  const unavailable = /* @__PURE__ */ new Set();
+  for (const ref of stored) {
+    try {
       const repository = await adapter.resolveRepository(ref.repoId);
-      return { ...ref, repoRoot: repository.repoRoot };
-    })
-  );
+      refs.push({ ...ref, repoRoot: repository.repoRoot });
+    } catch (cause) {
+      if (cause instanceof UnknownRepositoryError) {
+        unavailable.add(ref.repoId);
+      } else {
+        throw cause;
+      }
+    }
+  }
+  return { refs, unavailable: [...unavailable].sort() };
 }
 function collectUids(value, uids) {
   if (Array.isArray(value)) {
@@ -1272,7 +1373,7 @@ var import_node_crypto3 = __toESM(require("crypto"));
 var import_node_fs3 = __toESM(require("fs"));
 var import_node_path3 = __toESM(require("path"));
 var ok2 = (data) => ({
-  content: [{ type: "text", text: JSON.stringify(data, null, 2) }]
+  content: [{ type: "text", text: JSON.stringify(data) }]
 });
 var err2 = (code, message) => ({
   content: [{ type: "text", text: JSON.stringify({ code, error: message }) }],
@@ -1352,14 +1453,29 @@ function safePath(root, candidate) {
   if (relative2.startsWith("..") || import_node_path3.default.isAbsolute(relative2)) {
     throw new Error(`path escapes repository root: ${candidate}`);
   }
+  if (import_node_fs3.default.existsSync(absolute)) {
+    if (!pathContains(realPathOf(root), realPathOf(absolute))) {
+      throw new Error(`path escapes repository root via symlink: ${candidate}`);
+    }
+  }
   return absolute;
 }
-function markdownFiles(target) {
+function realPathOf(target) {
+  try {
+    return import_node_fs3.default.realpathSync(target);
+  } catch {
+    return import_node_path3.default.resolve(target);
+  }
+}
+function markdownFiles(target, realRoot, visited = /* @__PURE__ */ new Set()) {
   if (!import_node_fs3.default.existsSync(target)) return [];
+  const real = realPathOf(target);
+  if (!pathContains(realRoot, real)) return [];
   const stat = import_node_fs3.default.statSync(target);
   if (stat.isFile()) return target.endsWith(".md") ? [target] : [];
-  if (!stat.isDirectory()) return [];
-  return import_node_fs3.default.readdirSync(target, { withFileTypes: true }).flatMap((entry) => markdownFiles(import_node_path3.default.join(target, entry.name)));
+  if (!stat.isDirectory() || visited.has(real)) return [];
+  visited.add(real);
+  return import_node_fs3.default.readdirSync(target, { withFileTypes: true }).flatMap((entry) => markdownFiles(import_node_path3.default.join(target, entry.name), realRoot, visited));
 }
 function fileDescriptor(root, absolute) {
   const content = import_node_fs3.default.readFileSync(absolute, "utf8");
@@ -1374,9 +1490,7 @@ async function handleSyncTool(client2, args) {
   try {
     const action = String(args.action || "");
     const context = args.invocation_context || {};
-    const adapter = new CodegraphAdapter({
-      cwd: context.cwd || process.cwd()
-    });
+    const adapter = new CodegraphAdapter({ cwd: invocationCwd(args) });
     const requestedRepo = typeof args.repo === "string" ? args.repo : typeof args.repo_id === "string" ? args.repo_id : context.repoId;
     const repository = await adapter.resolveRepository(requestedRepo);
     const root = repository.repoRoot;
@@ -1385,6 +1499,12 @@ async function handleSyncTool(client2, args) {
     const remote = client2;
     if (action === "scan") {
       const repositories = args.workspace === true ? await adapter.resolveRepositories() : [repository];
+      if (args.workspace === true && repositories.length === 0) {
+        return err2(
+          "workspace_not_configured",
+          `workspace scan found no declared repositories: ${adapter.workspaceDiagnostic()}`
+        );
+      }
       const requested = Array.isArray(args.paths) && args.paths.length > 0 ? args.paths.map(String) : [".claude/agent-memory", "memory"];
       const scans = [];
       for (const selected of repositories) {
@@ -1441,10 +1561,11 @@ async function handleSyncTool(client2, args) {
   }
 }
 async function scanRepository(remote, repository, requested, provider, agentId) {
+  const realRoot = realPathOf(repository.repoRoot);
   const files = [
     ...new Set(
       requested.flatMap(
-        (candidate) => markdownFiles(safePath(repository.repoRoot, candidate))
+        (candidate) => markdownFiles(safePath(repository.repoRoot, candidate), realRoot)
       )
     )
   ].sort();
@@ -1502,12 +1623,23 @@ function clip(value, max, state) {
 }
 function isNodeShaped(value) {
   const node = obj(value);
-  return Boolean(node && str(node.uid) && (str(node.label) || str(node.node_type)));
+  return Boolean(
+    node && str(node.uid) && (str(node.label) || str(node.node_type) || obj(node.node_type))
+  );
+}
+function nodeDisplayType(node) {
+  const props = obj(node.props);
+  const plain = str(node.node_type);
+  return (plain && plain !== "Custom" ? plain : void 0) ?? str(obj(node.node_type)?.Custom) ?? str(props?.object_type) ?? str(props?.type_name) ?? str(obj(props?.data)?.domain_type) ?? plain ?? "Node";
+}
+function nodeFields(node) {
+  const props = obj(node.props);
+  return obj(props?.fields) ?? obj(obj(props?.data)?.fields);
 }
 function unwrapSearchResult(value) {
   if (isNodeShaped(value)) return value;
   const wrapper = obj(value);
-  const inner = obj(wrapper?.node);
+  const inner = obj(wrapper?.node) ?? obj(wrapper?.object);
   if (inner && isNodeShaped(inner)) {
     const score = num(wrapper.score);
     return score !== void 0 ? { ...inner, retrieval_score: score } : inner;
@@ -1545,7 +1677,7 @@ function sourceTag(node) {
   return `from: ${title}${extra}`;
 }
 function layer7Fields(node, state) {
-  const fields = obj(obj(node.props)?.fields);
+  const fields = nodeFields(node);
   if (!fields) return void 0;
   const pairs = Object.entries(fields).filter(([, value]) => value !== null && value !== void 0 && value !== "").map(([key, value]) => `${key}: ${Array.isArray(value) ? value.join(", ") : String(value)}`);
   if (pairs.length === 0) return void 0;
@@ -1557,7 +1689,7 @@ function nodeSummaryText(node, state) {
 }
 function nodeLines(node, state) {
   const label = clip(node.label, LABEL_MAX, state) || "(unlabeled)";
-  const type = str(node.node_type) || "Node";
+  const type = nodeDisplayType(node);
   const confidence = num(node.confidence);
   const score = num(node.retrieval_score);
   const parenthetical = [
@@ -1576,19 +1708,19 @@ function nodeLines(node, state) {
   if (source) lines.push(`  - ${source}`);
   const believers = Array.isArray(node.believed_by) ? node.believed_by : [];
   if (believers.length > 0) {
-    const rendered = believers.slice(0, 3).map((raw) => {
+    const rendered2 = believers.slice(0, 3).map((raw) => {
       const believer = obj(raw);
       const conf = num(believer?.confidence);
       return `${str(believer?.agent_label) || "?"}${conf !== void 0 ? ` (${conf})` : ""}`;
     }).join(", ");
-    lines.push(`  - believed by: ${rendered}`);
+    lines.push(`  - believed by: ${rendered2}`);
   }
   return lines.join("\n");
 }
 function groupedNodeSections(nodes, state, headingPrefix = "") {
   const groups = /* @__PURE__ */ new Map();
   for (const node of nodes) {
-    const type = str(node.node_type) || "Node";
+    const type = nodeDisplayType(node);
     const group = groups.get(type) ?? [];
     group.push(node);
     groups.set(type, group);
@@ -1604,7 +1736,7 @@ function groupedNodeSections(nodes, state, headingPrefix = "") {
   }
   return sections;
 }
-function relationshipItems(edges, labelByUid, state) {
+function relationshipItems(edges, labelByUid, state, options) {
   const lines = [];
   for (const raw of edges) {
     const edge = obj(raw);
@@ -1614,8 +1746,8 @@ function relationshipItems(edges, labelByUid, state) {
     const to = str(edge.to_uid);
     if (CURATION_EDGE_TYPES.has(type)) continue;
     if (!from || !to || from === to) continue;
-    const fromLabel = labelByUid.get(from);
-    const toLabel = labelByUid.get(to);
+    const fromLabel = labelByUid.get(from) ?? (options?.fallbackToUid ? `[${from}]` : void 0);
+    const toLabel = labelByUid.get(to) ?? (options?.fallbackToUid ? `[${to}]` : void 0);
     if (!fromLabel || !toLabel) continue;
     lines.push(`- ${fromLabel} \u2014${type}\u2192 ${toLabel}`);
   }
@@ -1658,8 +1790,8 @@ function assemble(header, sections, state) {
       sectionUsed += marker.length + 1;
     }
     lines.push(
-      section.items.length === 0 ? section.heading : `${section.heading}
-${kept.join("\n")}`
+      section.items.length === 0 ? section.heading : section.heading ? `${section.heading}
+${kept.join("\n")}` : kept.join("\n")
     );
     used += headingCost + sectionUsed;
   }
@@ -1790,15 +1922,15 @@ function renderTraversal(response) {
   const labelByUid = /* @__PURE__ */ new Map();
   for (const node of nodes) labelByUid.set(str(node.uid), str(node.label) || "?");
   if (paths.length > 0) {
-    const items = paths.map((raw) => obj(raw)).filter((path3) => Boolean(path3)).map((path3, index) => {
-      const uids = Array.isArray(path3.node_uids) ? path3.node_uids.map(String) : [];
-      const labels = Array.isArray(path3.labels) ? path3.labels.map(String) : Array.isArray(path3.nodes) ? path3.nodes.map((hop) => {
+    const items = paths.map((raw) => obj(raw)).filter((path5) => Boolean(path5)).map((path5, index) => {
+      const uids = Array.isArray(path5.node_uids) ? path5.node_uids.map(String) : [];
+      const labels = Array.isArray(path5.labels) ? path5.labels.map(String) : Array.isArray(path5.nodes) ? path5.nodes.map((hop) => {
         const hopNode = obj(hop);
         return str(hopNode?.label) || labelByUid.get(str(hopNode?.uid) || "") || str(hop) || "?";
       }) : [];
       const route = labels.length > 0 ? labels.join(" \u2192 ") : uids.join(" \u2192 ") || "(path)";
-      const cost = num(path3.cost) ?? num(path3.path_cost);
-      const confidence = num(path3.path_confidence);
+      const cost = num(path5.cost) ?? num(path5.path_cost);
+      const confidence = num(path5.path_confidence);
       const meta = [
         cost !== void 0 ? `cost ${cost}` : void 0,
         confidence !== void 0 ? `confidence ${confidence}` : void 0
@@ -1822,6 +1954,157 @@ function renderTraversal(response) {
   }
   return assemble("# Graph traversal", sections, state);
 }
+function neighborLine(value) {
+  const node = obj(value);
+  if (!node) return void 0;
+  const label = str(node.label) || "(unlabeled)";
+  const uid = str(node.uid);
+  const type = str(node.node_type);
+  return `- ${label}${uid ? ` [${uid}]` : ""}${type ? ` (${type})` : ""}`;
+}
+function renderOntologyAnswer(response) {
+  const payload = obj(response);
+  if (!payload) return void 0;
+  const objects = Array.isArray(payload.objects) ? payload.objects.filter(isNodeShaped) : isNodeShaped(payload.object) ? [payload.object] : [];
+  const cognitive = obj(payload.cognitive_context);
+  const provenance = Array.isArray(payload.provenance) ? payload.provenance : [];
+  const hasQuerySignature = Array.isArray(payload.objects) || obj(payload.confidence) !== void 0;
+  const cognitiveEmpty = !cognitive || Object.values(cognitive).every((v) => !Array.isArray(v) || v.length === 0);
+  if (objects.length === 0 && cognitiveEmpty && provenance.length === 0) {
+    return hasQuerySignature ? "No matching domain objects." : void 0;
+  }
+  const state = { bounded: false };
+  const sections = [];
+  if (objects.length > 0) {
+    sections.push(...groupedNodeSections(objects, state));
+  }
+  const labelByUid = /* @__PURE__ */ new Map();
+  for (const node of objects) labelByUid.set(str(node.uid), str(node.label) || "?");
+  const graph = obj(payload.graph);
+  for (const raw of Array.isArray(graph?.nodes) ? graph.nodes : []) {
+    const node = obj(raw);
+    const uid = str(node?.uid);
+    if (uid && !labelByUid.has(uid)) labelByUid.set(uid, str(node?.label) || "?");
+  }
+  if (cognitive) {
+    for (const rawNodes of Object.values(cognitive)) {
+      if (!Array.isArray(rawNodes)) continue;
+      for (const raw of rawNodes) {
+        const node = obj(raw);
+        const uid = str(node?.uid);
+        if (uid && !labelByUid.has(uid)) labelByUid.set(uid, str(node?.label) || "?");
+      }
+    }
+  }
+  const relations = Array.isArray(payload.relations) ? payload.relations : [];
+  const relationLines = relationshipItems(relations, labelByUid, state, { fallbackToUid: true });
+  if (relationLines.length > 0) {
+    sections.push({ heading: "## Relations", items: relationLines });
+  }
+  if (cognitive) {
+    for (const [category, rawNodes] of Object.entries(cognitive)) {
+      if (!Array.isArray(rawNodes) || rawNodes.length === 0) continue;
+      const items = rawNodes.map(neighborLine).filter((line) => Boolean(line));
+      if (items.length > 0) {
+        sections.push({ heading: `### Cognitive context \u2014 ${category}`, items });
+      }
+    }
+  }
+  if (provenance.length > 0) {
+    const items = provenance.map((raw) => obj(raw)).filter((entry) => Boolean(entry)).map((entry) => {
+      const span = clip(entry.text_span, QUOTE_MAX, state) || "";
+      const by = str(entry.ingested_by_name);
+      const suffix = `${by ? ` (ingested by ${by})` : ""} [source ${str(entry.source_uid) || "?"}]`;
+      return str(entry.span_kind) === "anchor" ? `- "${span}"${suffix}` : `- context: ${span}${suffix}`;
+    });
+    sections.push({ heading: "## Sources", items });
+  }
+  const confidence = num(obj(payload.confidence)?.overall);
+  const notes = [];
+  if (confidence !== void 0) notes.push(`overall confidence ${confidence}`);
+  if (payload.has_more === true) notes.push("more results exist (has_more)");
+  if (payload.seed_cap_hit === true) notes.push("seed cap hit \u2014 narrow the query for a complete set");
+  if (notes.length > 0) sections.push({ heading: `Note: ${notes.join("; ")}.`, items: [] });
+  return assemble(
+    `# Ontology results (${objects.length} object${objects.length === 1 ? "" : "s"})`,
+    sections,
+    state
+  );
+}
+function renderObjectList(response, title) {
+  const payload = obj(response);
+  if (!payload) return void 0;
+  const rawItems = Array.isArray(payload.items) ? payload.items : Array.isArray(payload.rows) && payload.rows.some((row) => unwrapSearchResult(row)) ? payload.rows : void 0;
+  const items = (rawItems ?? []).map(unwrapSearchResult).filter((node) => Boolean(node));
+  if (items.length === 0) {
+    return rawItems ? `# ${title} (0 results)` : void 0;
+  }
+  const state = { bounded: false };
+  const sections = groupedNodeSections(items, state);
+  const total = num(payload.total_count);
+  const truncations = Array.isArray(payload.truncation_reasons) ? payload.truncation_reasons.filter((reason) => typeof reason === "string") : [];
+  const notes = [];
+  if (payload.has_more === true) notes.push("more results exist");
+  if (truncations.length > 0) notes.push(`truncated: ${truncations.join(", ")}`);
+  if (notes.length > 0) sections.push({ heading: `Note: ${notes.join("; ")}.`, items: [] });
+  const count = total !== void 0 && total !== items.length ? `${items.length} of ${total}` : `${items.length}`;
+  return assemble(`# ${title} (${count})`, sections, state);
+}
+var JOBS_RENDER_MAX = 20;
+function renderJobs(response) {
+  const jobs = Array.isArray(response) ? response : obj(response)?.jobs;
+  if (!Array.isArray(jobs)) return void 0;
+  if (jobs.length === 0) return "No ingestion jobs.";
+  const state = { bounded: false };
+  const sorted = jobs.map((raw) => obj(raw)).filter((job) => Boolean(job)).sort((a, b) => (num(b.created_at) ?? 0) - (num(a.created_at) ?? 0));
+  const shown = sorted.slice(0, JOBS_RENDER_MAX);
+  if (shown.length < sorted.length) state.bounded = true;
+  const items = shown.map((job) => {
+    const progress = obj(job.progress);
+    const done = num(progress?.processed_chunks);
+    const totalChunks = num(progress?.total_chunks);
+    const bits = [
+      str(job.status) || "?",
+      done !== void 0 && totalChunks !== void 0 ? `${done}/${totalChunks} chunks` : void 0,
+      num(progress?.nodes_created) !== void 0 ? `${num(progress?.nodes_created)} nodes` : void 0,
+      num(job.queue_position) !== void 0 ? `queue #${num(job.queue_position)}` : void 0,
+      str(job.error) ? `error: ${clip(job.error, 160, state)}` : void 0
+    ].filter(Boolean);
+    return `- [${str(job.id) || "?"}] ${clip(job.title, 120, state) || "(untitled)"} \u2014 ${bits.join(", ")}`;
+  });
+  return assemble(
+    `# Ingestion jobs (${shown.length}${shown.length < sorted.length ? ` of ${sorted.length}` : ""})`,
+    [{ heading: "", items }],
+    state
+  );
+}
+function renderSignals(response) {
+  const payload = obj(response);
+  if (!payload) return void 0;
+  const state = { bounded: false };
+  const sections = [];
+  for (const [key, value] of Object.entries(payload)) {
+    if (!Array.isArray(value) || value.length === 0) continue;
+    const items = value.map((raw) => obj(raw)).filter((item) => Boolean(item)).map((item) => {
+      const fromLabel = str(item.from_label);
+      const toLabel = str(item.to_label);
+      const anyLabelKey = Object.keys(item).find(
+        (k) => k.endsWith("_label") && str(item[k])
+      );
+      const label = str(item.label) ?? str(item.title) ?? str(item.name) ?? (fromLabel && toLabel ? `${fromLabel} \u2194 ${toLabel}` : void 0) ?? (anyLabelKey ? str(item[anyLabelKey]) : void 0) ?? str(item.uid) ?? str(item.target_uid) ?? "(item)";
+      const uid = str(item.uid) ?? str(item.target_uid);
+      const numbers = Object.entries(item).filter(([, v]) => typeof v === "number").slice(0, 4).map(([k, v]) => `${k} ${Math.round(v * 100) / 100}`);
+      const lists = Object.entries(item).filter(([, v]) => Array.isArray(v) && v.length > 0).slice(0, 2).map(([k, v]) => `${k}: ${v.length}`);
+      const meta = [...numbers, ...lists].join(", ");
+      return `- ${clip(label, 160, state)}${uid && uid !== label ? ` [${uid}]` : ""}${meta ? ` (${meta})` : ""}`;
+    });
+    if (items.length > 0) {
+      sections.push({ heading: `## ${key.replace(/_/g, " ")}`, items });
+    }
+  }
+  if (sections.length === 0) return void 0;
+  return assemble("# Synthesis signals", sections, state);
+}
 
 // src/tools.ts
 var TOOLS = [
@@ -2631,6 +2914,11 @@ var TOOLS = [
           type: "string",
           description: "Job ID to check status (for job_status action)"
         },
+        format: {
+          type: "string",
+          enum: ["text", "json"],
+          description: "job_status without job_id: 'text' (default) renders the 20 most recent jobs; 'json' returns the full raw list."
+        },
         agent_id: {
           type: "string",
           description: "Agent identity"
@@ -2666,6 +2954,11 @@ var TOOLS = [
           type: "string",
           description: "Job ID to poll (for action='job_status')"
         },
+        format: {
+          type: "string",
+          enum: ["text", "json"],
+          description: "signals action: 'text' (default) renders signal sections; 'json' returns the raw payload."
+        },
         agent_id: {
           type: "string",
           description: "Agent identity"
@@ -2774,6 +3067,11 @@ var TOOLS = [
           items: { type: "string" },
           description: "Chunk/document UIDs to extract from (for action=extract)"
         },
+        format: {
+          type: "string",
+          enum: ["text", "json"],
+          description: "Output format for the read actions query/search/objects/object/object_context (default 'text'): a compact rendered block. Pass 'json' for the raw server response."
+        },
         agent_id: {
           type: "string",
           description: "Agent identity"
@@ -2816,9 +3114,14 @@ function toolsForProfile(profile = process.env.MINDGRAPH_PROFILE || "general") {
 }
 function ok3(data) {
   return {
-    content: [{ type: "text", text: JSON.stringify(data, null, 2) }]
+    content: [{ type: "text", text: JSON.stringify(data) }]
   };
 }
+function renderedResult(format, raw, render) {
+  if (format === "json") return ok3(raw);
+  const text = render(raw);
+  return text !== void 0 ? { content: [{ type: "text", text }] } : ok3(raw);
+}
 function err3(message) {
   return {
     content: [{ type: "text", text: JSON.stringify({ error: message }) }],
@@ -3430,15 +3733,11 @@ async function handleRetrieve(client2, args) {
     max_cost,
     agent_id
   } = args;
-  const rendered = (raw, render) => {
-    if (format === "json") return ok3(raw);
-    const text = render(raw);
-    return text !== void 0 ? { content: [{ type: "text", text }] } : ok3(raw);
-  };
+  const rendered2 = (raw, render) => renderedResult(format, raw, render);
   switch (action) {
     case "context":
       if (!query) return err3("query is required for context retrieval");
-      return rendered(
+      return rendered2(
         await client2.retrieveContext({
           query,
           node_limit: limit,
@@ -3463,7 +3762,7 @@ async function handleRetrieve(client2, args) {
       );
     case "text":
       if (!query) return err3("query is required for text search");
-      return rendered(
+      return rendered2(
         await client2.retrieve({
           action: "text",
           query,
@@ -3477,7 +3776,7 @@ async function handleRetrieve(client2, args) {
       );
     case "semantic":
       if (!query) return err3("query is required for semantic search");
-      return rendered(
+      return rendered2(
         await client2.retrieve({
           action: "semantic",
           query,
@@ -3491,7 +3790,7 @@ async function handleRetrieve(client2, args) {
       );
     case "hybrid":
       if (!query) return err3("query is required for hybrid search");
-      return rendered(
+      return rendered2(
         await client2.retrieve({
           action: "hybrid",
           query,
@@ -3513,7 +3812,7 @@ async function handleRetrieve(client2, args) {
     case "weak_claims":
     case "pending_approvals":
     case "unresolved_contradictions":
-      return rendered(
+      return rendered2(
         await client2.retrieve({
           action,
           limit,
@@ -3523,7 +3822,7 @@ async function handleRetrieve(client2, args) {
         (raw) => renderNodeList(raw, action.replace(/_/g, " "), limit)
       );
     case "stale_derivations":
-      return rendered(
+      return rendered2(
         await client2.retrieve({
           action: "stale_derivations",
           limit,
@@ -3532,7 +3831,7 @@ async function handleRetrieve(client2, args) {
         (raw) => renderNodeList(raw, "stale derivations", limit)
       );
     case "preferences":
-      return rendered(
+      return rendered2(
         await client2.retrieve({
           action: "preferences",
           ...query ? { query, k: limit } : {},
@@ -3543,7 +3842,7 @@ async function handleRetrieve(client2, args) {
       );
     case "layer":
       if (!layer) return err3("layer is required for layer retrieval");
-      return rendered(
+      return rendered2(
         await client2.retrieve({
           action: "layer",
           layer,
@@ -3554,7 +3853,7 @@ async function handleRetrieve(client2, args) {
         (raw) => renderNodeList(raw, `Layer: ${layer}`, limit)
       );
     case "recent":
-      return rendered(
+      return rendered2(
         await client2.retrieve({
           action: "recent",
           limit,
@@ -3569,7 +3868,7 @@ async function handleRetrieve(client2, args) {
       );
     // Document inventory
     case "document_index":
-      return rendered(
+      return rendered2(
         await client2.getNodes({
           node_type: "Document",
           limit: limit ?? 100
@@ -3579,7 +3878,7 @@ async function handleRetrieve(client2, args) {
     // Graph traversal
     case "chain":
       if (!start_uid) return err3("start_uid is required for chain traversal");
-      return rendered(
+      return rendered2(
         await client2.traverse({
           action: "chain",
           start_uid,
@@ -3592,7 +3891,7 @@ async function handleRetrieve(client2, args) {
       );
     case "neighborhood":
       if (!start_uid) return err3("start_uid is required for neighborhood traversal");
-      return rendered(
+      return rendered2(
         await client2.traverse({
           action: "neighborhood",
           start_uid,
@@ -3608,7 +3907,7 @@ async function handleRetrieve(client2, args) {
     case "path":
       if (!start_uid) return err3("start_uid is required for path traversal");
       if (!end_uid) return err3("end_uid is required for path traversal");
-      return rendered(
+      return rendered2(
         await client2.traverse({
           action: "path",
           start_uid,
@@ -3624,7 +3923,7 @@ async function handleRetrieve(client2, args) {
       );
     case "subgraph":
       if (!start_uid) return err3("start_uid is required for subgraph traversal");
-      return rendered(
+      return rendered2(
         await client2.traverse({
           action: "subgraph",
           start_uid,
@@ -3640,7 +3939,7 @@ async function handleRetrieve(client2, args) {
     case "top_k_paths":
       if (!start_uid) return err3("start_uid is required for top_k_paths");
       if (!end_uid) return err3("end_uid is required for top_k_paths");
-      return rendered(
+      return rendered2(
         await client2.traverse({
           action: "top_k_paths",
           start_uid,
@@ -3677,6 +3976,7 @@ async function handleIngest(client2, args) {
     chunk_size,
     chunk_overlap,
     job_id,
+    format,
     agent_id
   } = args;
   const src = source_uri ?? source;
@@ -3746,19 +4046,21 @@ async function handleIngest(client2, args) {
       if (job_id) {
         return ok3(await client2.getJob(job_id));
       }
-      return ok3(await client2.listJobs());
+      return renderedResult(format, await client2.listJobs(), renderJobs);
     default:
       return err3(`Unknown ingest action: ${action}`);
   }
 }
 async function handleSynthesize(client2, args) {
-  const { action, project_uid, signals, target_types, job_id } = args;
+  const { action, project_uid, signals, target_types, job_id, format } = args;
   switch (action) {
     case "signals":
       if (!project_uid)
         return err3("project_uid is required for action='signals'");
-      return ok3(
-        await client2.signals(project_uid, { signals, target_types })
+      return renderedResult(
+        format,
+        await client2.signals(project_uid, { signals, target_types }),
+        renderSignals
       );
     case "run":
       if (!project_uid)
@@ -3792,6 +4094,7 @@ async function handleOntology(client2, args) {
     relation_type,
     fields,
     source_uids,
+    format,
     agent_id
   } = args;
   switch (action) {
@@ -3807,7 +4110,8 @@ async function handleOntology(client2, args) {
           "schema_id is required for action='query' (use action='schemas' to find the active schema)"
         );
       }
-      return ok3(
+      return renderedResult(
+        format,
         await client2.queryOntology({
           query,
           schema_id,
@@ -3816,29 +4120,42 @@ async function handleOntology(client2, args) {
           include_sources: include_sources ?? true,
           depth,
           limit
-        })
+        }),
+        renderOntologyAnswer
       );
     }
     case "search":
       if (!query) return err3("query is required for action='search'");
-      return ok3(
+      return renderedResult(
+        format,
         await client2.searchDomainObjects(query, {
           schema_id,
           object_types,
           limit
-        })
+        }),
+        (raw) => renderObjectList(raw, `Domain search: ${query}`)
       );
     case "objects":
       if (!schema_id) return err3("schema_id is required for action='objects'");
-      return ok3(
-        await client2.listDomainObjects({ schema_id, object_type, limit })
+      return renderedResult(
+        format,
+        await client2.listDomainObjects({ schema_id, object_type, limit }),
+        (raw) => renderObjectList(raw, `Domain objects${object_type ? `: ${object_type}` : ""}`)
       );
     case "object":
       if (!uid) return err3("uid is required for action='object'");
-      return ok3(await client2.getDomainObject(uid));
+      return renderedResult(
+        format,
+        await client2.getDomainObject(uid),
+        (raw) => renderNodeList([raw], "Domain object")
+      );
     case "object_context":
       if (!uid) return err3("uid is required for action='object_context'");
-      return ok3(await client2.getDomainObjectContext(uid, depth));
+      return renderedResult(
+        format,
+        await client2.getDomainObjectContext(uid, depth),
+        renderOntologyAnswer
+      );
     case "proposals":
       return ok3(
         await client2.listOntologyProposals({
@@ -3892,8 +4209,14 @@ async function handleOntology(client2, args) {
 
 // src/generated-tools.ts
 var ok4 = (data) => ({
-  content: [{ type: "text", text: JSON.stringify(data, null, 2) }]
+  // Compact on purpose — pretty-printing doubled the token cost.
+  content: [{ type: "text", text: JSON.stringify(data) }]
 });
+var rendered = (format, raw, render) => {
+  if (format === "json") return ok4(raw);
+  const text = render(raw);
+  return text !== void 0 ? { content: [{ type: "text", text }] } : ok4(raw);
+};
 var err4 = (message) => ({
   content: [{ type: "text", text: JSON.stringify({ error: message }) }],
   isError: true
@@ -3932,10 +4255,21 @@ async function getGeneratedTools(client2) {
         );
       }
       byName.set(d.name, d);
+      const inputSchema = d.maps_to === "structured_query" ? d.input_schema : {
+        ...d.input_schema,
+        properties: {
+          ...d.input_schema.properties,
+          format: {
+            type: "string",
+            enum: ["text", "json"],
+            description: "Output format (default 'text': compact rendered block). Pass 'json' for the raw server response."
+          }
+        }
+      };
       tools.push({
         name: d.name,
         description: d.description,
-        inputSchema: d.input_schema
+        inputSchema
       });
     }
     cache = { tools, byName, fetchedAt: Date.now() };
@@ -3964,31 +4298,41 @@ async function handleGeneratedTool(client2, desc, args) {
         if (!query) return err4(`query is required for ${desc.name}`);
         const limit = typeof args.limit === "number" ? args.limit : void 0;
         const filters = Array.isArray(args.filters) ? args.filters : void 0;
-        return ok4(
+        return rendered(
+          args.format,
           await ontologyClient.searchDomainObjects(query, {
             schema_id: desc.schema_id,
             object_types: [desc.object_type],
             filters,
             limit
-          })
+          }),
+          (raw) => renderObjectList(raw, `${desc.object_type} search: ${query}`)
         );
       }
       case "object": {
         const uid = args.uid;
         if (!uid) return err4(`uid is required for ${desc.name}`);
-        return ok4(await ontologyClient.getDomainObject(uid, {
-          schema_id: desc.schema_id,
-          object_type: desc.object_type
-        }));
+        return rendered(
+          args.format,
+          await ontologyClient.getDomainObject(uid, {
+            schema_id: desc.schema_id,
+            object_type: desc.object_type
+          }),
+          (raw) => renderNodeList([raw], desc.object_type)
+        );
       }
       case "object_context": {
         const uid = args.uid;
         if (!uid) return err4(`uid is required for ${desc.name}`);
         const depth = typeof args.depth === "number" ? args.depth : void 0;
-        return ok4(await ontologyClient.getDomainObjectContext(uid, depth, {
-          schema_id: desc.schema_id,
-          object_type: desc.object_type
-        }));
+        return rendered(
+          args.format,
+          await ontologyClient.getDomainObjectContext(uid, depth, {
+            schema_id: desc.schema_id,
+            object_type: desc.object_type
+          }),
+          renderOntologyAnswer
+        );
       }
       case "related": {
         const uid = args.uid;
@@ -4001,18 +4345,22 @@ async function handleGeneratedTool(client2, desc, args) {
             "related ontology tools require a graph-aware version of the mindgraph SDK"
           );
         }
-        return ok4(await ontologyClient.queryRelatedDomainObjects({
-          schema_id: desc.schema_id,
-          entry_type: desc.object_type,
-          uid,
-          relation: desc.relation,
-          entry_role: desc.entry_role,
-          far_type: desc.far_type,
-          where: Array.isArray(args.where) ? args.where : void 0,
-          include_provenance: args.include_provenance === true,
-          limit: typeof args.limit === "number" ? args.limit : void 0,
-          offset: typeof args.offset === "number" ? args.offset : void 0
-        }));
+        return rendered(
+          args.format,
+          await ontologyClient.queryRelatedDomainObjects({
+            schema_id: desc.schema_id,
+            entry_type: desc.object_type,
+            uid,
+            relation: desc.relation,
+            entry_role: desc.entry_role,
+            far_type: desc.far_type,
+            where: Array.isArray(args.where) ? args.where : void 0,
+            include_provenance: args.include_provenance === true,
+            limit: typeof args.limit === "number" ? args.limit : void 0,
+            offset: typeof args.offset === "number" ? args.offset : void 0
+          }),
+          (raw) => renderObjectList(raw, `${desc.far_type} related via ${desc.relation}`)
+        );
       }
       case "structured_query": {
         const select = args.select;
@@ -4213,7 +4561,7 @@ async function checkMcpGovernance(toolName, args, config) {
   if (!response) {
     return {
       allowed: false,
-      message: `MindGraph governance could not establish permission after ${retryDelays.length + 1} attempts (${lastFailure}). Set MINDGRAPH_GOVERNANCE=off to run this adapter ungoverned.`
+      message: `MindGraph at ${config.baseUrl} is unreachable (${lastFailure}; ${retryDelays.length + 1} attempts). The tool call was NOT evaluated against policy and NOT executed \u2014 this is a connectivity failure, not a governance denial. Check the network and MINDGRAPH_BASE_URL, then retry.`
     };
   }
   if (!response.ok) {
@@ -4331,7 +4679,7 @@ var RESOURCE_TEMPLATES = [
 var RESOURCE_GOVERNANCE_TOOL = "mindgraph_retrieve";
 function json(uri, data) {
   return {
-    contents: [{ uri, mimeType: "application/json", text: JSON.stringify(data, null, 2) }]
+    contents: [{ uri, mimeType: "application/json", text: JSON.stringify(data) }]
   };
 }
 async function readResource(client2, uri) {
@@ -4379,6 +4727,225 @@ async function readGovernedResource(client2, uri, governanceConfig) {
   return readResource(client2, uri);
 }
 
+// src/index.ts
+var import_node_path5 = __toESM(require("path"));
+
+// src/hook-installer.ts
+var import_node_fs4 = __toESM(require("fs"));
+var import_node_os3 = __toESM(require("os"));
+var import_node_path4 = __toESM(require("path"));
+var import_node_crypto4 = __toESM(require("crypto"));
+var OWNER_MARKER = "--owner mindgraph";
+var RUNNER_RELATIVE = ".mindgraph/bin/mindgraph-hook.cjs";
+function command(harness) {
+  return `node "$HOME/${RUNNER_RELATIVE}" hook --harness ${harness} --owner mindgraph`;
+}
+function windowsCommand(harness) {
+  return `node "%USERPROFILE%\\.mindgraph\\bin\\mindgraph-hook.cjs" hook --harness ${harness} --owner mindgraph`;
+}
+var RUNNER_VERSION_RELATIVE = `${RUNNER_RELATIVE}.version`;
+function installHookRunner(sourceFile, homeDir, version) {
+  const target = import_node_path4.default.join(homeDir || import_node_os3.default.homedir(), RUNNER_RELATIVE);
+  import_node_fs4.default.mkdirSync(import_node_path4.default.dirname(target), { recursive: true });
+  const temporary = `${target}.${process.pid}.${import_node_crypto4.default.randomUUID()}.tmp`;
+  import_node_fs4.default.copyFileSync(sourceFile, temporary);
+  import_node_fs4.default.renameSync(temporary, target);
+  const versionPath = import_node_path4.default.join(homeDir || import_node_os3.default.homedir(), RUNNER_VERSION_RELATIVE);
+  if (version) {
+    import_node_fs4.default.writeFileSync(versionPath, `${version}
+`);
+  } else {
+    import_node_fs4.default.rmSync(versionPath, { force: true });
+  }
+  return target;
+}
+function installedHookRunnerVersion(homeDir) {
+  try {
+    const raw = import_node_fs4.default.readFileSync(
+      import_node_path4.default.join(homeDir || import_node_os3.default.homedir(), RUNNER_VERSION_RELATIVE),
+      "utf8"
+    ).trim();
+    return raw || void 0;
+  } catch {
+    return void 0;
+  }
+}
+function parseSemver(value) {
+  if (!value) return void 0;
+  const match = /^(\d+)\.(\d+)\.(\d+)$/.exec(value.trim());
+  if (!match) return void 0;
+  return [Number(match[1]), Number(match[2]), Number(match[3])];
+}
+function semverNewer(a, b) {
+  for (let index = 0; index < 3; index += 1) {
+    if (a[index] !== b[index]) return a[index] > b[index];
+  }
+  return false;
+}
+function refreshHookRunner(serverVersion, sourceBundle, homeDir) {
+  try {
+    if (process.env.MINDGRAPH_HOOK_AUTOUPDATE === "off") {
+      return { refreshed: false, reason: "disabled" };
+    }
+    const home = homeDir || import_node_os3.default.homedir();
+    if (!import_node_fs4.default.existsSync(import_node_path4.default.join(home, RUNNER_RELATIVE))) {
+      return { refreshed: false, reason: "no_runner" };
+    }
+    if (!import_node_fs4.default.existsSync(sourceBundle)) {
+      return { refreshed: false, reason: "no_source" };
+    }
+    const server2 = parseSemver(serverVersion);
+    if (!server2) return { refreshed: false, reason: "unparseable" };
+    const runnerVersion = installedHookRunnerVersion(home);
+    if (runnerVersion !== void 0) {
+      const pinned = parseSemver(runnerVersion);
+      if (!pinned) {
+        return { refreshed: false, reason: "unparseable", runnerVersion };
+      }
+      if (!semverNewer(server2, pinned)) {
+        return {
+          refreshed: false,
+          reason: runnerVersion === serverVersion ? "current" : "downgrade",
+          runnerVersion
+        };
+      }
+    }
+    installHookRunner(sourceBundle, home, serverVersion);
+    return { refreshed: true, reason: "updated", runnerVersion };
+  } catch {
+    return { refreshed: false, reason: "error" };
+  }
+}
+function refreshOwnedClaudeHooks(projectDir = process.cwd(), homeDir) {
+  const refreshed = [];
+  const scopes = ["user", "project"];
+  for (const scope of scopes) {
+    try {
+      const file = settingsPath("claude-code", scope, projectDir, void 0, homeDir);
+      if (!import_node_fs4.default.existsSync(file)) continue;
+      if (!import_node_fs4.default.readFileSync(file, "utf8").includes(OWNER_MARKER)) continue;
+      installHooks("claude-code", scope, projectDir, void 0, homeDir);
+      refreshed.push(file);
+    } catch {
+    }
+  }
+  return refreshed;
+}
+function versionSkewNote(serverVersion, homeDir) {
+  const runnerVersion = installedHookRunnerVersion(homeDir);
+  if (!runnerVersion || runnerVersion === serverVersion) return void 0;
+  return `NOTE: the installed MindGraph hook runner is v${runnerVersion} but this MCP server is v${serverVersion} \u2014 hook behavior and tool contracts may be out of sync. Tell the user to run: npx -y mindgraph-mcp@latest install-hooks (refreshes the pinned runner).`;
+}
+function settingsPath(harness, scope, projectDir = process.cwd(), codexHomeDir = process.env.CODEX_HOME || import_node_path4.default.join(import_node_os3.default.homedir(), ".codex"), homeDir) {
+  if (harness === "codex") {
+    return scope === "user" ? import_node_path4.default.join(codexHomeDir, "hooks.json") : import_node_path4.default.join(projectDir, ".codex", "hooks.json");
+  }
+  return scope === "user" ? import_node_path4.default.join(homeDir || import_node_os3.default.homedir(), ".claude", "settings.json") : import_node_path4.default.join(projectDir, ".claude", "settings.json");
+}
+function readSettings(file) {
+  if (!import_node_fs4.default.existsSync(file)) return {};
+  return JSON.parse(import_node_fs4.default.readFileSync(file, "utf8"));
+}
+function ownedHook(harness, timeout, additionalContextLimit) {
+  return {
+    type: "command",
+    command: command(harness),
+    ...harness === "codex" ? { commandWindows: windowsCommand(harness) } : {},
+    timeout,
+    statusMessage: "Syncing MindGraph session context",
+    ...additionalContextLimit === void 0 ? {} : { additionalContextLimit }
+  };
+}
+function desiredEntries(harness) {
+  const common = {
+    SessionStart: [
+      {
+        matcher: harness === "claude-code" ? "startup|resume|clear|compact|fork" : "startup|resume|clear|compact",
+        // B7 live acceptance caught cold SessionStart calls crossing the
+        // inherited 20s edge in both harnesses: the hooks correctly failed
+        // open, but no brief reached the model. The same installed runner
+        // completed in 16.84s once warm. Keep a 30s cold-tenant margin.
+        // The declared Codex context limit must not undercut the brief's own
+        // 9,000-char budget: at 3,000 the harness applied a SECOND, tighter
+        // truncation the renderer knew nothing about.
+        hooks: [
+          ownedHook(
+            harness,
+            30,
+            harness === "codex" ? 1e4 : void 0
+          )
+        ]
+      }
+    ],
+    PreToolUse: [
+      {
+        matcher: "mcp__mindgraph__.*",
+        // Repository resolution over a large multi-repo workspace plus three
+        // git probes can exceed 3s on the first (uncached) call; a killed
+        // PreToolUse means the call goes through untagged.
+        hooks: [ownedHook(harness, 5)]
+      }
+    ],
+    // PostToolUse awaits the lease renewal round-trip, which fires exactly
+    // when the tenant is cold (post-idle reclaim) — 5s killed it mid-claim.
+    PostToolUse: [{ matcher: ".*", hooks: [ownedHook(harness, 10)] }],
+    Stop: [{ hooks: [ownedHook(harness, 5)] }],
+    // SessionEnd makes up to two sequential cloud calls (abandon_iteration +
+    // session close) — the SAME cold-tenant latency SessionStart needs 30s
+    // for. Claude honors the configured budget; Codex clamps SessionEnd to a
+    // 3s platform cap regardless of this value (see codex-hooks.ts wire
+    // map), so the codex adapter instead makes at most ONE call there.
+    SessionEnd: [
+      { hooks: [ownedHook(harness, harness === "codex" ? 3 : 30)] }
+    ]
+  };
+  return harness === "claude-code" ? {
+    ...common,
+    TaskCreated: [{ hooks: [ownedHook(harness, 3)] }],
+    TaskCompleted: [{ hooks: [ownedHook(harness, 3)] }]
+  } : common;
+}
+function hookCommand(value) {
+  if (!value || typeof value !== "object" || Array.isArray(value)) return void 0;
+  const command2 = value.command;
+  return typeof command2 === "string" ? command2 : void 0;
+}
+function entryHasOwnedHook(value) {
+  if (!value || typeof value !== "object" || Array.isArray(value)) return false;
+  const hooks = value.hooks;
+  return Array.isArray(hooks) && hooks.some((hook) => hookCommand(hook)?.includes(OWNER_MARKER));
+}
+function writeSettings(file, settings) {
+  import_node_fs4.default.mkdirSync(import_node_path4.default.dirname(file), { recursive: true });
+  const temporary = `${file}.${process.pid}.${import_node_crypto4.default.randomUUID()}.tmp`;
+  import_node_fs4.default.writeFileSync(temporary, `${JSON.stringify(settings, null, 2)}
+`, {
+    mode: 384
+  });
+  import_node_fs4.default.renameSync(temporary, file);
+}
+function installHooks(harness, scope, projectDir = process.cwd(), codexHomeDir, homeDir) {
+  const file = settingsPath(harness, scope, projectDir, codexHomeDir, homeDir);
+  const settings = readSettings(file);
+  const hooks = settings.hooks && typeof settings.hooks === "object" && !Array.isArray(settings.hooks) ? settings.hooks : {};
+  let added = 0;
+  let updated = 0;
+  for (const [event, wanted] of Object.entries(desiredEntries(harness))) {
+    const current = Array.isArray(hooks[event]) ? [...hooks[event]] : [];
+    const kept = current.filter((entry) => !entryHasOwnedHook(entry));
+    const hadOwned = kept.length !== current.length;
+    for (const entry of wanted) {
+      kept.push(entry);
+      if (hadOwned) updated += 1;
+      else added += 1;
+    }
+    hooks[event] = kept;
+  }
+  settings.hooks = hooks;
+  writeSettings(file, settings);
+  return { path: file, added, updated };
+}
+
 // src/index.ts
 var API_KEY = process.env.MINDGRAPH_API_KEY;
 var BASE_URL = process.env.MINDGRAPH_BASE_URL || "https://api.mindgraph.cloud";
@@ -4501,10 +5068,42 @@ if (PROFILE === "coding") {
     (line) => !line.includes("mindgraph_code") && !line.includes("`code`") && !line.includes("Typed code anchors")
   ).join("\n");
 }
+var RUNNER_REFRESH = (() => {
+  try {
+    return refreshHookRunner("0.18.0", import_node_path5.default.join(__dirname, "cli.js"));
+  } catch {
+    return void 0;
+  }
+})();
+if (RUNNER_REFRESH?.refreshed) {
+  const refreshedSettings = (() => {
+    try {
+      return refreshOwnedClaudeHooks();
+    } catch {
+      return [];
+    }
+  })();
+  console.error(
+    `[mindgraph-mcp] refreshed pinned hook runner ${RUNNER_REFRESH.runnerVersion ? `v${RUNNER_REFRESH.runnerVersion}` : "(pre-sidecar)"} \u2192 v${"0.18.0"}` + (refreshedSettings.length > 0 ? `; refreshed owned hook entries in ${refreshedSettings.join(", ")}` : "")
+  );
+}
+var HOOK_SKEW_NOTE = (() => {
+  try {
+    return versionSkewNote("0.18.0");
+  } catch {
+    return void 0;
+  }
+})();
+if (HOOK_SKEW_NOTE) {
+  INSTRUCTIONS += `
+
+${HOOK_SKEW_NOTE}`;
+  console.error(`[mindgraph-mcp] ${HOOK_SKEW_NOTE}`);
+}
 var server = new import_server.Server(
   {
     name: "mindgraph",
-    version: "0.16.0"
+    version: "0.18.0"
   },
   {
     capabilities: {
@@ -4718,7 +5317,7 @@ async function main() {
   const transport = new import_stdio.StdioServerTransport();
   await server.connect(transport);
   console.error(
-    `MindGraph MCP server v${"0.16.0"} running on stdio (${BASE_URL})`
+    `MindGraph MCP server v${"0.18.0"} running on stdio (${BASE_URL})`
   );
 }
 main().catch((error) => {