mindgraph-core 0.1.0

package/dist/embeddings/embedder-interface.d.ts

@@ -0,0 +1,15 @@
+export interface EmbeddingProvider {
+    readonly modelId: string;
+    readonly dimensions: number;
+    /** Initialize the model (download if needed, load into memory). */
+    initialize(): Promise<void>;
+    /** Embed a single text. */
+    embed(text: string): Promise<Float32Array>;
+    /** Embed multiple texts (batch). May be more efficient. */
+    embedBatch(texts: string[]): Promise<Float32Array[]>;
+    /** Check if the provider is available (e.g., Ollama running). */
+    isAvailable(): Promise<boolean>;
+    /** Release resources. */
+    dispose(): Promise<void>;
+}
+//# sourceMappingURL=embedder-interface.d.ts.map

package/dist/embeddings/embedder-interface.d.ts.map

@@ -0,0 +1 @@
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package/dist/embeddings/embedder-interface.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=embedder-interface.js.map

package/dist/embeddings/embedder-interface.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"embedder-interface.js","sourceRoot":"","sources":["../../src/embeddings/embedder-interface.ts"],"names":[],"mappings":""}

package/dist/embeddings/ollama-embedder.d.ts

@@ -0,0 +1,21 @@
+import type { EmbeddingProvider } from './embedder-interface.js';
+export interface OllamaEmbedderOptions {
+    baseUrl?: string;
+    model?: string;
+}
+/**
+ * Embedding provider using Ollama's embedding API.
+ * Uses nomic-embed-text by default (768 dimensions).
+ */
+export declare class OllamaEmbedder implements EmbeddingProvider {
+    readonly modelId: string;
+    readonly dimensions: number;
+    private readonly baseUrl;
+    constructor(options?: OllamaEmbedderOptions);
+    initialize(): Promise<void>;
+    embed(text: string): Promise<Float32Array>;
+    embedBatch(texts: string[]): Promise<Float32Array[]>;
+    isAvailable(): Promise<boolean>;
+    dispose(): Promise<void>;
+}
+//# sourceMappingURL=ollama-embedder.d.ts.map

package/dist/embeddings/ollama-embedder.d.ts.map

@@ -0,0 +1 @@
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package/dist/embeddings/ollama-embedder.js

@@ -0,0 +1,78 @@
+/**
+ * Embedding provider using Ollama's embedding API.
+ * Uses nomic-embed-text by default (768 dimensions).
+ */
+export class OllamaEmbedder {
+    constructor(options = {}) {
+        this.baseUrl = options.baseUrl ?? 'http://localhost:11434';
+        this.modelId = options.model ?? 'nomic-embed-text';
+        // nomic-embed-text: 768d, all-minilm: 384d, mxbai-embed-large: 1024d
+        this.dimensions = this.modelId.includes('minilm') ? 384 : this.modelId.includes('mxbai') ? 1024 : 768;
+    }
+    async initialize() {
+        // Verify Ollama is running and model is available
+        const available = await this.isAvailable();
+        if (!available) {
+            throw new Error(`Ollama not available at ${this.baseUrl} or model ${this.modelId} not found`);
+        }
+    }
+    async embed(text) {
+        const response = await fetch(`${this.baseUrl}/api/embeddings`, {
+            method: 'POST',
+            headers: { 'Content-Type': 'application/json' },
+            body: JSON.stringify({
+                model: this.modelId,
+                prompt: text,
+            }),
+        });
+        if (!response.ok) {
+            throw new Error(`Ollama embedding failed: ${response.status} ${response.statusText}`);
+        }
+        const data = (await response.json());
+        return new Float32Array(data.embedding);
+    }
+    async embedBatch(texts) {
+        if (texts.length <= 1) {
+            return texts.length === 0 ? [] : [await this.embed(texts[0])];
+        }
+        // Try Ollama's /api/embed batch endpoint first
+        try {
+            const response = await fetch(`${this.baseUrl}/api/embed`, {
+                method: 'POST',
+                headers: { 'Content-Type': 'application/json' },
+                body: JSON.stringify({ model: this.modelId, input: texts }),
+            });
+            if (response.ok) {
+                const data = (await response.json());
+                return data.embeddings.map((e) => new Float32Array(e));
+            }
+        }
+        catch {
+            // Fall through to sequential
+        }
+        // Fallback: sequential
+        const results = [];
+        for (const text of texts) {
+            results.push(await this.embed(text));
+        }
+        return results;
+    }
+    async isAvailable() {
+        try {
+            const response = await fetch(`${this.baseUrl}/api/tags`, {
+                signal: AbortSignal.timeout(3000),
+            });
+            if (!response.ok)
+                return false;
+            const data = (await response.json());
+            return data.models.some((m) => m.name.includes(this.modelId));
+        }
+        catch {
+            return false;
+        }
+    }
+    async dispose() {
+        // no-op
+    }
+}
+//# sourceMappingURL=ollama-embedder.js.map

package/dist/embeddings/ollama-embedder.js.map

@@ -0,0 +1 @@
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package/dist/embeddings/transformers-embedder.d.ts

@@ -0,0 +1,20 @@
+import type { EmbeddingProvider } from './embedder-interface.js';
+/**
+ * In-process embedding using Transformers.js (ONNX Runtime / WASM).
+ * Uses all-MiniLM-L6-v2 (384 dimensions, ~80MB model).
+ * Runs entirely locally — no external dependencies.
+ */
+export declare class TransformersEmbedder implements EmbeddingProvider {
+    private readonly cacheDir?;
+    readonly modelId = "all-MiniLM-L6-v2";
+    readonly dimensions = 384;
+    private pipeline;
+    private pipelineFn;
+    constructor(cacheDir?: string | undefined);
+    initialize(): Promise<void>;
+    embed(text: string): Promise<Float32Array>;
+    embedBatch(texts: string[]): Promise<Float32Array[]>;
+    isAvailable(): Promise<boolean>;
+    dispose(): Promise<void>;
+}
+//# sourceMappingURL=transformers-embedder.d.ts.map

package/dist/embeddings/transformers-embedder.d.ts.map

@@ -0,0 +1 @@
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package/dist/embeddings/transformers-embedder.js

@@ -0,0 +1,61 @@
+/**
+ * In-process embedding using Transformers.js (ONNX Runtime / WASM).
+ * Uses all-MiniLM-L6-v2 (384 dimensions, ~80MB model).
+ * Runs entirely locally — no external dependencies.
+ */
+export class TransformersEmbedder {
+    constructor(cacheDir) {
+        this.cacheDir = cacheDir;
+        this.modelId = 'all-MiniLM-L6-v2';
+        this.dimensions = 384;
+        this.pipeline = null;
+        this.pipelineFn = null;
+    }
+    async initialize() {
+        // Dynamic import to avoid bundling issues
+        const { pipeline, env } = await import('@huggingface/transformers');
+        if (this.cacheDir) {
+            env.cacheDir = this.cacheDir;
+        }
+        // Disable remote model downloads attempt if offline
+        env.allowRemoteModels = true;
+        this.pipelineFn = pipeline;
+        this.pipeline = await pipeline('feature-extraction', 'Xenova/all-MiniLM-L6-v2', {
+            quantized: true,
+        });
+    }
+    async embed(text) {
+        if (!this.pipeline) {
+            throw new Error('TransformersEmbedder not initialized. Call initialize() first.');
+        }
+        const embedFn = this.pipeline;
+        const result = await embedFn(text, {
+            pooling: 'mean',
+            normalize: true,
+        });
+        return new Float32Array(result.data);
+    }
+    async embedBatch(texts) {
+        // Transformers.js handles batching internally
+        const results = [];
+        for (const text of texts) {
+            results.push(await this.embed(text));
+        }
+        return results;
+    }
+    async isAvailable() {
+        try {
+            if (!this.pipeline)
+                await this.initialize();
+            return true;
+        }
+        catch {
+            return false;
+        }
+    }
+    async dispose() {
+        this.pipeline = null;
+        this.pipelineFn = null;
+    }
+}
+//# sourceMappingURL=transformers-embedder.js.map

package/dist/embeddings/transformers-embedder.js.map

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package/dist/extraction/anthropic-extractor.d.ts

@@ -0,0 +1,17 @@
+import { LLMExtractor } from './llm-extractor.js';
+export interface AnthropicExtractorOptions {
+    apiKey: string;
+    model?: string;
+}
+/**
+ * LLM-based extractor using the Anthropic Messages API.
+ */
+export declare class AnthropicExtractor extends LLMExtractor {
+    readonly name = "anthropic";
+    private readonly apiKey;
+    private readonly model;
+    constructor(options: AnthropicExtractorOptions);
+    isAvailable(): Promise<boolean>;
+    protected callLLM(prompt: string): Promise<string>;
+}
+//# sourceMappingURL=anthropic-extractor.d.ts.map

package/dist/extraction/anthropic-extractor.d.ts.map

@@ -0,0 +1 @@
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package/dist/extraction/anthropic-extractor.js

@@ -0,0 +1,43 @@
+import { LLMExtractor } from './llm-extractor.js';
+import { retryFetch } from '../utils/retry-fetch.js';
+/**
+ * LLM-based extractor using the Anthropic Messages API.
+ */
+export class AnthropicExtractor extends LLMExtractor {
+    constructor(options) {
+        super();
+        this.name = 'anthropic';
+        this.apiKey = options.apiKey;
+        this.model = options.model ?? 'claude-haiku-4-5-20251001';
+    }
+    async isAvailable() {
+        return this.apiKey.trim().length > 0;
+    }
+    async callLLM(prompt) {
+        const response = await retryFetch('https://api.anthropic.com/v1/messages', {
+            method: 'POST',
+            headers: {
+                'Content-Type': 'application/json',
+                'x-api-key': this.apiKey,
+                'anthropic-version': '2023-06-01',
+            },
+            body: JSON.stringify({
+                model: this.model,
+                system: 'You are a structured data extraction system. Always respond with valid JSON only, no extra text.',
+                messages: [
+                    { role: 'user', content: prompt },
+                ],
+                max_tokens: 2048,
+                temperature: 0.1,
+            }),
+        });
+        if (!response.ok) {
+            const text = await response.text().catch(() => '');
+            throw new Error(`Anthropic request failed: ${response.status} ${text}`);
+        }
+        const data = (await response.json());
+        const textBlock = data.content.find((b) => b.type === 'text');
+        return textBlock?.text ?? '{}';
+    }
+}
+//# sourceMappingURL=anthropic-extractor.js.map

package/dist/extraction/anthropic-extractor.js.map

@@ -0,0 +1 @@
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package/dist/extraction/basic-extractor.d.ts

@@ -0,0 +1,17 @@
+import type { Chunk } from '../ingestion/chunker.js';
+import type { ExtractionProvider, ExtractionResult } from './extractor-interface.js';
+/**
+ * Heuristic/regex-based extractor.
+ * Zero-dependency fallback that works without Ollama.
+ * Extracts:
+ *  - Wiki-links [[like this]] as entities/concepts
+ *  - #tags as concepts
+ *  - Capitalized multi-word phrases as potential entities
+ *  - URLs, dates, locations (basic patterns)
+ */
+export declare class BasicExtractor implements ExtractionProvider {
+    readonly name = "basic";
+    isAvailable(): Promise<boolean>;
+    extract(chunk: Chunk, _noteContent: string): Promise<ExtractionResult>;
+}
+//# sourceMappingURL=basic-extractor.d.ts.map

package/dist/extraction/basic-extractor.d.ts.map

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package/dist/extraction/basic-extractor.js

@@ -0,0 +1,135 @@
+/**
+ * Heuristic/regex-based extractor.
+ * Zero-dependency fallback that works without Ollama.
+ * Extracts:
+ *  - Wiki-links [[like this]] as entities/concepts
+ *  - #tags as concepts
+ *  - Capitalized multi-word phrases as potential entities
+ *  - URLs, dates, locations (basic patterns)
+ */
+export class BasicExtractor {
+    constructor() {
+        this.name = 'basic';
+    }
+    async isAvailable() {
+        return true; // always available
+    }
+    async extract(chunk, _noteContent) {
+        const text = chunk.text;
+        const entities = [];
+        const concepts = [];
+        // Extract [[wiki-links]]
+        const wikiLinkRegex = /\[\[([^\]|]+)(?:\|([^\]]+))?\]\]/g;
+        let match;
+        while ((match = wikiLinkRegex.exec(text)) !== null) {
+            const target = match[1].trim();
+            const alias = match[2]?.trim();
+            const start = chunk.startOffset + match.index;
+            const end = start + match[0].length;
+            // Classify: if it looks like a proper noun, it's an entity; otherwise concept
+            if (looksLikeProperNoun(target)) {
+                const existing = entities.find((e) => e.name.toLowerCase() === target.toLowerCase());
+                if (existing) {
+                    existing.spans.push({ start, end });
+                    if (alias && !existing.aliases.includes(alias)) {
+                        existing.aliases.push(alias);
+                    }
+                }
+                else {
+                    entities.push({
+                        name: target,
+                        entityType: 'other',
+                        aliases: alias ? [alias] : [],
+                        description: '',
+                        confidence: 0.7,
+                        spans: [{ start, end }],
+                    });
+                }
+            }
+            else {
+                if (!concepts.find((c) => c.name.toLowerCase() === target.toLowerCase())) {
+                    concepts.push({
+                        name: target,
+                        domain: '',
+                        description: '',
+                        confidence: 0.6,
+                    });
+                }
+            }
+        }
+        // Extract #tags as concepts
+        const tagRegex = /#([a-zA-Z][\w/-]*)/g;
+        while ((match = tagRegex.exec(text)) !== null) {
+            const tag = match[1];
+            if (!concepts.find((c) => c.name.toLowerCase() === tag.toLowerCase())) {
+                concepts.push({
+                    name: tag,
+                    domain: '',
+                    description: `Tag: ${tag}`,
+                    confidence: 0.8,
+                });
+            }
+        }
+        // Extract capitalized multi-word phrases (potential named entities)
+        const namedEntityRegex = /(?:^|[\s,;(])((?:[A-Z][a-z]+\s+){1,3}[A-Z][a-z]+)/g;
+        while ((match = namedEntityRegex.exec(text)) !== null) {
+            const name = match[1].trim();
+            // Skip common false positives
+            if (isCommonPhrase(name))
+                continue;
+            if (entities.find((e) => e.name.toLowerCase() === name.toLowerCase()))
+                continue;
+            const start = chunk.startOffset + match.index;
+            const end = start + match[0].length;
+            entities.push({
+                name,
+                entityType: guessEntityType(name),
+                aliases: [],
+                description: '',
+                confidence: 0.4, // lower confidence for regex matches
+                spans: [{ start, end }],
+            });
+        }
+        return {
+            entities,
+            concepts,
+            propositions: [], // basic extractor doesn't extract propositions
+            thoughts: [], // basic extractor doesn't extract thoughts
+        };
+    }
+}
+function looksLikeProperNoun(text) {
+    const words = text.split(/\s+/);
+    return words.some((w) => /^[A-Z][a-z]/.test(w));
+}
+function guessEntityType(name) {
+    const lower = name.toLowerCase();
+    const orgSuffixes = ['inc', 'corp', 'co', 'ltd', 'llc', 'foundation', 'institute', 'university', 'company'];
+    if (orgSuffixes.some((s) => lower.endsWith(s)))
+        return 'organization';
+    // Simple heuristic: 2-3 word names are likely people
+    const words = name.split(/\s+/);
+    if (words.length >= 2 && words.length <= 3)
+        return 'person';
+    return 'other';
+}
+const COMMON_PHRASES = new Set([
+    'the first', 'the last', 'the next', 'the other',
+    'for example', 'in addition', 'on the', 'in the',
+    'this is', 'that is', 'there are', 'there is',
+    'new york', // keep this as entity
+]);
+function isCommonPhrase(phrase) {
+    const lower = phrase.toLowerCase();
+    // Filter out very short or generic phrases
+    if (phrase.length < 4)
+        return true;
+    if (COMMON_PHRASES.has(lower))
+        return true;
+    // Filter phrases starting with common words
+    if (/^(the|a|an|this|that|these|those|my|your|his|her|its|our|their)\s/i.test(phrase)) {
+        return true;
+    }
+    return false;
+}
+//# sourceMappingURL=basic-extractor.js.map

package/dist/extraction/basic-extractor.js.map

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package/dist/extraction/confidence-gate.d.ts

@@ -0,0 +1,7 @@
+import type { ExtractionResult } from './extractor-interface.js';
+/**
+ * Filter extraction results by confidence threshold.
+ * Items below the threshold are dropped.
+ */
+export declare function applyConfidenceGate(result: ExtractionResult, threshold?: number): ExtractionResult;
+//# sourceMappingURL=confidence-gate.d.ts.map

package/dist/extraction/confidence-gate.d.ts.map

@@ -0,0 +1 @@
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package/dist/extraction/confidence-gate.js

@@ -0,0 +1,13 @@
+/**
+ * Filter extraction results by confidence threshold.
+ * Items below the threshold are dropped.
+ */
+export function applyConfidenceGate(result, threshold = 0.5) {
+    return {
+        entities: result.entities.filter((e) => e.confidence >= threshold),
+        concepts: result.concepts.filter((c) => c.confidence >= threshold),
+        propositions: result.propositions.filter((p) => p.confidence >= threshold),
+        thoughts: result.thoughts.filter((t) => t.confidence >= threshold),
+    };
+}
+//# sourceMappingURL=confidence-gate.js.map

package/dist/extraction/confidence-gate.js.map

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package/dist/extraction/contradiction-detector.d.ts

@@ -0,0 +1,46 @@
+import type { StorageAdapter } from '../storage/storage-interface.js';
+import type { EmbeddingProvider } from '../embeddings/embedder-interface.js';
+import { type GraphNode } from '../schema/types.js';
+export interface ContradictionCandidate {
+    propositionA: GraphNode;
+    propositionB: GraphNode;
+    similarityScore: number;
+    sharedTargets: string[];
+    method: 'negation_heuristic' | 'llm_judge';
+    evidence: {
+        p1Span?: string;
+        p2Span?: string;
+    };
+}
+/**
+ * Detects contradictions between propositions.
+ * Strategy: embedding similarity to find candidates, then topic-grounding filter,
+ * then heuristic conflict check.
+ */
+export declare class ContradictionDetector {
+    private storage;
+    private embedder;
+    constructor(storage: StorageAdapter, embedder: EmbeddingProvider | null);
+    /**
+     * Find propositions that may contradict the given proposition.
+     * Uses embedding similarity to find candidates about the same topic,
+     * then filters by shared ABOUT targets (topic grounding).
+     */
+    findCandidates(propositionId: string, topK?: number, similarityThreshold?: number): Promise<ContradictionCandidate[]>;
+    /**
+     * Create CONTRADICTS edges for confirmed contradictions with enriched data.
+     */
+    createContradictionEdges(candidates: ContradictionCandidate[]): Promise<string[]>;
+    /**
+     * Get ABOUT edge target IDs for a proposition.
+     */
+    private getAboutTargetIds;
+    /**
+     * Fallback: find shared entity/concept mentions from source chunks.
+     */
+    private getSharedMentionTargets;
+    private getSourceChunkIds;
+    private findCandidatesByText;
+    private statementsConflict;
+}
+//# sourceMappingURL=contradiction-detector.d.ts.map

package/dist/extraction/contradiction-detector.d.ts.map

@@ -0,0 +1 @@
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