mindforge-cc 11.5.0 → 11.6.0

package/.agent/skills/code-wiki/SKILL.md

@@ -0,0 +1,438 @@
+---
+name: code-wiki
+description: "Generate wiki docs + Mermaid diagrams for any codebase."
+version: 0.1.0
+---
+
+# Code Wiki Skill
+
+Generate a comprehensive wiki for any codebase — overview, architecture, per-module deep-dives, Mermaid class and sequence diagrams. Inspired by Google CodeWiki, but works on local repos, private repos, and any language. Uses only existing tools (`terminal`, `read_file`, `search_files`, `write_file`); no Docker, no external services, no extra dependencies.
+
+This skill produces **reference documentation** (what/how). It does not produce strategic narrative (why — that's a different skill).
+
+## When to Use
+
+- User says "document this codebase", "generate a wiki", "make architecture diagrams"
+- Onboarding to an unfamiliar repo and wants a structured reference
+- User points at a GitHub URL and asks for documentation
+- Need a stable artifact (markdown + Mermaid) that renders on GitHub
+
+Do NOT use this for:
+- Single-file or single-function documentation — just answer directly
+- API reference for one specific endpoint — use `read_file` and answer inline
+- Strategic "why does this exist" narrative — different skill, different purpose
+- Codebases the user is actively developing in this session — just answer questions as they come
+
+## Prerequisites
+
+- No env vars required.
+- `git` on PATH for repo SHA tracking and remote clones.
+- Optional: `pygount` for language-breakdown stats (see the `codebase-inspection` skill).
+
+## How to Run
+
+Invoke through the `terminal` tool from the target repo's root, then use `read_file` / `search_files` / `write_file` to produce the wiki. Default output location is `~/.agent/wikis/<repo-name>/`. Only write into the repo (`docs/wiki/`) when the user explicitly requests it.
+
+## Quick Reference
+
+| Step | Action |
+|---|---|
+| 1 | Resolve target — local cwd, given path, or `git clone --depth 50 <url>` to a temp dir |
+| 2 | Scan structure — `ls`, `find -maxdepth 3`, manifest files, README |
+| 3 | Pick 8–10 modules to document |
+| 4 | Write `README.md` (overview + module map) |
+| 5 | Write `architecture.md` with Mermaid flowchart |
+| 6 | Write per-module docs in `modules/` |
+| 7 | Write `diagrams/class-diagram.md` (Mermaid classDiagram) |
+| 8 | Write `diagrams/sequences.md` (Mermaid sequenceDiagram, 2–4 workflows) |
+| 9 | Write `getting-started.md` |
+| 10 | Write `api.md` if applicable, else skip |
+| 11 | Write `.codewiki-state.json` |
+| 12 | Report paths to user |
+
+## Procedure
+
+### 1. Resolve the target
+
+For a GitHub URL:
+
+```bash
+WIKI_TMP=$(mktemp -d)
+git clone --depth 50 <url> "$WIKI_TMP/repo"
+cd "$WIKI_TMP/repo"
+REPO_SHA=$(git rev-parse HEAD)
+REPO_NAME=$(basename <url> .git)
+```
+
+For a local path (or cwd if none given):
+
+```bash
+cd <path>
+REPO_SHA=$(git rev-parse HEAD 2>/dev/null || echo "uncommitted")
+REPO_NAME=$(basename "$PWD")
+```
+
+Then set the output dir:
+
+```bash
+OUTPUT_DIR="$HOME/.hermes/wikis/$REPO_NAME"
+mkdir -p "$OUTPUT_DIR/modules" "$OUTPUT_DIR/diagrams"
+```
+
+### 2. Scan repo structure
+
+Use the `terminal` tool for the shell work, `read_file` for manifests:
+
+```bash
+# Shallow tree first
+ls -la
+
+# Deeper tree, noise filtered
+find . -type d \
+  -not -path '*/\.*' \
+  -not -path '*/node_modules*' \
+  -not -path '*/venv*' \
+  -not -path '*/__pycache__*' \
+  -not -path '*/dist*' \
+  -not -path '*/build*' \
+  -not -path '*/target*' \
+  -maxdepth 3 | sort
+
+# Language breakdown (skip if pygount unavailable)
+pygount --format=summary \
+  --folders-to-skip=".git,node_modules,venv,.venv,__pycache__,.cache,dist,build,target" \
+  . 2>/dev/null || true
+```
+
+Then `read_file` the relevant manifests (`package.json`, `pyproject.toml`, `setup.py`, `Cargo.toml`, `go.mod`, `pom.xml`, `build.gradle`) and the project README. Use `search_files target='files'` to find them rather than guessing names.
+
+### 3. Pick modules to document
+
+Cap initial pass at **8–10 modules**. Heuristics by language:
+
+- Python: top-level packages (dirs with `__init__.py`), plus subsystem dirs
+- JS/TS: `src/<subdir>`, top-level workspace dirs
+- Rust: each crate in a workspace, or top-level `src/<module>` dirs
+- Go: each top-level package directory
+- Mixed/unfamiliar: top-level directories that contain source code (not config, not tests)
+
+For very large repos, prioritize by:
+1. Imported-from count (a module imported by many is core)
+2. LOC (bigger modules usually warrant their own doc)
+3. Mentions in README / top-level docs
+
+State the module list to the user before generating per-module docs on big repos — gives them a chance to redirect.
+
+### 4. Write `README.md`
+
+`read_file` the actual project README plus the top 2–3 entry-point files. Then `write_file`:
+
+````markdown
+# <Project Name>
+
+<One paragraph: what it is and what it's for. Self-contained — don't assume the
+reader has the source README.>
+
+## Key Concepts
+
+- **<Concept 1>** — <one line>
+- **<Concept 2>** — <one line>
+
+## Entry Points
+
+- [`path/to/main.py`](<link>) — <what runs when you start it>
+- [`path/to/cli.py`](<link>) — <CLI surface>
+
+## High-Level Architecture
+
+<2-3 sentences. Detail goes in architecture.md.>
+
+See [architecture.md](architecture.md).
+
+## Module Map
+
+| Module | Purpose |
+|---|---|
+| [`<module>`](modules/<module>.md) | <one-line purpose> |
+
+## Getting Started
+
+See [getting-started.md](getting-started.md).
+````
+
+For link targets in local mode use relative paths. For cloned repos use `https://github.com/<owner>/<repo>/blob/<sha>/<path>` so links survive future commits.
+
+### 5. Write `architecture.md`
+
+````markdown
+# Architecture
+
+<2-3 paragraphs: shape of the system. What talks to what. Where data enters,
+where it exits, where state lives.>
+
+## Components
+
+- **<Component>** — <1-2 sentences>. See [`modules/<module>.md`](modules/<module>.md).
+
+## System Diagram
+
+```mermaid
+flowchart TD
+    User([User]) --> Entry[Entry Point]
+    Entry --> Core[Core Engine]
+    Core --> StorageA[(Database)]
+    Core --> ExternalAPI{{External API}}
+```
+
+## Data Flow
+
+1. **<Step>** — [`<file>`](<link>)
+2. **<Step>** — [`<file>`](<link>)
+
+## Key Design Decisions
+
+- <Anything load-bearing the reader should know>
+````
+
+**Mermaid shape semantics:**
+- `[]` = component
+- `[()]` = database / storage
+- `{{}}` = external service
+- `(())` = entry point or terminal
+- `-->` = sync call, `-.->` = async/event
+
+Cap at ~20 nodes per diagram. Split into sub-diagrams if larger.
+
+### 6. Write per-module docs in `modules/`
+
+For each selected module, inspect its layout with `ls`, identify 3–5 most important files (by size, by being named `core.py` / `main.py` / `__init__.py`, by being imported a lot), then `read_file` those files (use `offset` / `limit` to read only what you need; prefer `search_files` for specific symbols).
+
+````markdown
+# Module: `<module>`
+
+<1-2 sentence purpose.>
+
+## Responsibilities
+
+- <bullet>
+- <bullet>
+
+## Key Files
+
+- [`<module>/<file>`](<link>) — <what it does>
+
+## Public API
+
+<Functions/classes/constants other code uses. Group related items. Show
+signatures, not full implementations.>
+
+## Internal Structure
+
+<How the module is organized internally. State management.>
+
+## Dependencies
+
+- **Used by:** <other modules>
+- **Uses:** <other modules + external libs>
+
+## Notable Patterns / Gotchas
+
+- <Anything non-obvious>
+````
+
+### 7. Write `diagrams/class-diagram.md`
+
+Pick the 5–10 most important classes/types. `read_file` them, then write:
+
+````markdown
+# Class Diagram
+
+## Core Types
+
+```mermaid
+classDiagram
+    class Agent {
+        +string name
+        +list~Tool~ tools
+        +chat(message) string
+    }
+    class Tool {
+        <<interface>>
+        +name string
+        +execute(args) any
+    }
+    Agent --> Tool : uses
+    Tool <|-- TerminalTool
+    Tool <|-- WebTool
+```
+
+## Notes
+
+<Anything the diagram can't express — lifecycle, threading, etc.>
+````
+
+For languages without classes (Go, C, Rust): use the diagram for struct relationships, or skip class-diagram.md and explain it in prose in architecture.md. Don't force-fit.
+
+### 8. Write `diagrams/sequences.md`
+
+Pick 2–4 of the most important workflows. Trace each call path through the code (read entry point, follow function calls), then:
+
+````markdown
+# Sequence Diagrams
+
+## Workflow: <Name>
+
+<1 sentence describing what this does and when it runs.>
+
+```mermaid
+sequenceDiagram
+    participant User
+    participant CLI
+    participant Agent
+    participant LLM
+    User->>CLI: types message
+    CLI->>Agent: chat(message)
+    Agent->>LLM: API call
+    LLM-->>Agent: response + tool_calls
+    Agent->>Agent: execute tools
+    Agent-->>CLI: final response
+```
+
+### Walkthrough
+
+1. **User input** — [`cli.py:run_session`](<link>)
+2. **Message dispatch** — [`run_agent.py:AIAgent.chat`](<link>)
+````
+
+Don't invent participants. Every box must correspond to a real component the reader can find in the code.
+
+### 9. Write `getting-started.md`
+
+````markdown
+# Getting Started
+
+## Prerequisites
+
+<From manifest files + README. Be specific — versions if pinned.>
+
+## Installation
+
+```bash
+<exact commands>
+```
+
+## First Run
+
+```bash
+<minimum command to see the system do something useful>
+```
+
+## Common Workflows
+
+### <Workflow 1>
+<commands>
+
+## Configuration
+
+- `<config-file>` — <what it controls>
+- Env var `<VAR>` — <what it controls>
+
+## Where to Go Next
+
+- Architecture: [architecture.md](architecture.md)
+- Module reference: [README.md#module-map](README.md#module-map)
+````
+
+### 10. Write `api.md` (skip if not applicable)
+
+Only write this if the project is a library or API server. If it is:
+
+- Find the public API surface (`__init__.py` exports, OpenAPI specs, route handlers, exported types)
+- Document each public entry with signature, parameters, return type, one-line description
+- Group by category
+
+### 11. Write the state file
+
+```bash
+cat > "$OUTPUT_DIR/.codewiki-state.json" <<EOF
+{
+  "repo_name": "$REPO_NAME",
+  "source_path": "$PWD",
+  "source_sha": "$REPO_SHA",
+  "generated_at": "$(date -u +%Y-%m-%dT%H:%M:%SZ)",
+  "generator": "
+  "modules_documented": []
+}
+EOF
+```
+
+### 12. Report to user
+
+State exactly what was generated and where:
+
+```
+Generated wiki at ~/.agent/wikis/<repo-name>/:
+  README.md                   project overview, module map
+  architecture.md             system architecture + flowchart
+  getting-started.md          setup, first run, workflows
+  modules/<N files>           per-module deep-dives
+  diagrams/architecture.md    Mermaid flowchart
+  diagrams/class-diagram.md   Mermaid class diagram
+  diagrams/sequences.md       Mermaid sequence diagrams
+```
+
+If you cloned to a temp dir, remind the user it can be removed (`rm -rf "$WIKI_TMP"`) after they've reviewed the wiki.
+
+## Scope Control
+
+Generating a full wiki for a 500K-LOC monorepo is wildly token-expensive. Default to bounded scope:
+
+- Initial scan: max depth 3 directories
+- Per-module docs: cap at 10 modules unless user expands scope
+- Per-file reads: prefer `search_files` for symbols + `read_file` with `offset`/`limit` over full reads
+- Skip vendored code (`vendor/`, `third_party/`, generated code, `_pb2.py`, `.min.js`)
+
+If the user says "do the whole thing exhaustively", believe them — but ballpark the cost first: "this repo has ~340 source files, comprehensive coverage will be expensive — confirm?"
+
+## Re-Run / Update
+
+If `.codewiki-state.json` already exists at the target path:
+
+- Read it for previous SHA and module list
+- If source SHA matches: ask user if they want to regenerate or skip
+- If SHA differs: offer to regenerate only modules with changed files (`git diff --name-only <old-sha> HEAD`)
+
+Full incremental-regeneration is a future enhancement — for now, regenerating the whole thing is acceptable.
+
+## Pitfalls
+
+- **Fabricating components.** Every diagram node and claimed function call must be in the source. `read_file` before writing. The single biggest failure mode for auto-generated docs is plausible-sounding fabrication.
+- **Generic AI prose.** "This module is responsible for..." is content-free. Say what the module actually does in domain-specific terms.
+- **Restating code as prose.** A module doc that says "the `process` function processes things by calling `process_item` on each item" is worse than just linking to the function.
+- **Mermaid > 50 nodes.** They don't render legibly. Split them.
+- **Documenting tests, generated code, or vendored deps as if they were product code.** Skip them.
+- **In-repo output without asking.** Default is `~/.agent/wikis/`. Only write into the repo when the user explicitly requests it.
+- **Mermaid special chars need quotes:** `A["Tool / Agent"]` not `A[Tool / Agent]`. `<br>` for line breaks inside a node.
+- **Nested code fences in SKILL.md.** When writing a markdown example that contains a Mermaid block, use 4-backtick outer fences so the 3-backtick inner ` ```mermaid ` doesn't close the outer. (This SKILL.md does it.)
+- **classDiagram generics** render as `~T~` (e.g. `List~Tool~`), not `<T>`.
+- **GitHub Mermaid theme is fixed** — don't include `%%{init: ...}%%` blocks; they're stripped on render.
+
+## Verification
+
+After writing, verify:
+
+1. **Mermaid blocks balance** — opens equal closes per file:
+   ```bash
+   for f in "$OUTPUT_DIR"/diagrams/*.md "$OUTPUT_DIR"/architecture.md; do
+     opens=$(grep -c '^```mermaid' "$f")
+     total=$(grep -c '^```' "$f")
+     echo "$f: $opens mermaid blocks, $total total fences (expect total = opens*2)"
+   done
+   ```
+2. **All expected files exist** —
+   ```bash
+   ls "$OUTPUT_DIR"/{README.md,architecture.md,getting-started.md,.codewiki-state.json} \
+      "$OUTPUT_DIR"/modules/ "$OUTPUT_DIR"/diagrams/
+   ```
+3. **Module count matches what you intended** — `ls "$OUTPUT_DIR/modules" | wc -l` should equal the number of modules you committed to in Step 3.
+4. **No fabricated paths** — sanity-check 2–3 source links resolve to real files.

package/.agent/skills/code-wiki/templates/README.md

@@ -0,0 +1,31 @@
+# {{PROJECT_NAME}}
+
+{{ONE_PARAGRAPH_DESCRIPTION}}
+
+## Key Concepts
+
+- **{{CONCEPT_1}}** — {{ONE_LINE}}
+- **{{CONCEPT_2}}** — {{ONE_LINE}}
+- **{{CONCEPT_3}}** — {{ONE_LINE}}
+
+## Entry Points
+
+- [`{{PATH_1}}`]({{LINK_1}}) — {{WHAT_IT_DOES}}
+- [`{{PATH_2}}`]({{LINK_2}}) — {{WHAT_IT_DOES}}
+
+## High-Level Architecture
+
+{{TWO_TO_THREE_SENTENCES}}
+
+See [architecture.md](architecture.md) for the full picture.
+
+## Module Map
+
+| Module | Purpose |
+|---|---|
+| [`{{MODULE_1}}`](modules/{{MODULE_1}}.md) | {{ONE_LINE_PURPOSE}} |
+| [`{{MODULE_2}}`](modules/{{MODULE_2}}.md) | {{ONE_LINE_PURPOSE}} |
+
+## Getting Started
+
+See [getting-started.md](getting-started.md).

package/.agent/skills/code-wiki/templates/architecture.md

@@ -0,0 +1,30 @@
+# Architecture
+
+{{TWO_TO_THREE_PARAGRAPHS_SHAPE_OF_SYSTEM}}
+
+## Components
+
+- **{{COMPONENT_1}}** — {{ONE_TO_TWO_SENTENCES}} See [`modules/{{MODULE}}.md`](modules/{{MODULE}}.md).
+- **{{COMPONENT_2}}** — {{ONE_TO_TWO_SENTENCES}}
+
+## System Diagram
+
+```mermaid
+flowchart TD
+    User([User]) --> Entry[Entry Point]
+    Entry --> Core[Core Engine]
+    Core --> StorageA[(Database)]
+    Core --> ExternalAPI{{External API}}
+```
+
+## Data Flow
+
+1. **{{STEP_1}}** — [`{{FILE}}`]({{LINK}})
+2. **{{STEP_2}}** — [`{{FILE}}`]({{LINK}})
+3. **{{STEP_3}}** — [`{{FILE}}`]({{LINK}})
+
+## Key Design Decisions
+
+- {{DECISION_1}}
+- {{DECISION_2}}
+- {{DECISION_3}}

package/.agent/skills/code-wiki/templates/getting-started.md

@@ -0,0 +1,47 @@
+# Getting Started
+
+## Prerequisites
+
+- {{LANGUAGE_RUNTIME_VERSION}}
+- {{DEPENDENCY}}
+
+## Installation
+
+```bash
+{{INSTALL_COMMANDS}}
+```
+
+## First Run
+
+```bash
+{{FIRST_RUN_COMMAND}}
+```
+
+You should see {{EXPECTED_OUTPUT}}.
+
+## Common Workflows
+
+### {{WORKFLOW_1}}
+
+```bash
+{{COMMANDS}}
+```
+
+### {{WORKFLOW_2}}
+
+```bash
+{{COMMANDS}}
+```
+
+## Configuration
+
+Key config files and settings:
+
+- `{{CONFIG_FILE}}` — {{WHAT_IT_CONTROLS}}
+- Env var `{{VAR}}` — {{WHAT_IT_CONTROLS}}
+
+## Where to Go Next
+
+- Architecture overview: [architecture.md](architecture.md)
+- Module reference: [README.md#module-map](README.md#module-map)
+- Diagrams: [diagrams/](diagrams/)

package/.agent/skills/code-wiki/templates/module.md

@@ -0,0 +1,38 @@
+# Module: `{{MODULE_NAME}}`
+
+{{ONE_TO_TWO_SENTENCE_PURPOSE}}
+
+## Responsibilities
+
+- {{BULLET_1}}
+- {{BULLET_2}}
+- {{BULLET_3}}
+
+## Key Files
+
+- [`{{PATH_1}}`]({{LINK_1}}) — {{WHAT_IT_DOES}}
+- [`{{PATH_2}}`]({{LINK_2}}) — {{WHAT_IT_DOES}}
+
+## Public API
+
+### `{{FUNCTION_NAME}}({{SIGNATURE}})`
+
+{{ONE_LINE_DESCRIPTION}}
+
+**Parameters:**
+- `{{PARAM}}` ({{TYPE}}) — {{DESCRIPTION}}
+
+**Returns:** {{TYPE}} — {{DESCRIPTION}}
+
+## Internal Structure
+
+{{HOW_THE_MODULE_IS_ORGANIZED}}
+
+## Dependencies
+
+- **Used by:** {{OTHER_MODULES}}
+- **Uses:** {{OTHER_MODULES_AND_LIBS}}
+
+## Notable Patterns / Gotchas
+
+- {{ANYTHING_NON_OBVIOUS}}

package/.agent/skills/codebase-inspection/SKILL.md

@@ -0,0 +1,109 @@
+---
+name: codebase-inspection
+description: "Inspect codebases w/ pygount: LOC, languages, ratios."
+version: 1.0.0
+prerequisites:
+  commands: [pygount]
+---
+
+# Codebase Inspection with pygount
+
+Analyze repositories for lines of code, language breakdown, file counts, and code-vs-comment ratios using `pygount`.
+
+## When to Use
+
+- User asks for LOC (lines of code) count
+- User wants a language breakdown of a repo
+- User asks about codebase size or composition
+- User wants code-vs-comment ratios
+- General "how big is this repo" questions
+
+## Prerequisites
+
+```bash
+pip install --break-system-packages pygount 2>/dev/null || pip install pygount
+```
+
+## 1. Basic Summary (Most Common)
+
+Get a full language breakdown with file counts, code lines, and comment lines:
+
+```bash
+cd /path/to/repo
+pygount --format=summary \
+  --folders-to-skip=".git,node_modules,venv,.venv,__pycache__,.cache,dist,build,.next,.tox,.eggs,*.egg-info" \
+  .
+```
+
+**IMPORTANT:** Always use `--folders-to-skip` to exclude dependency/build directories, otherwise pygount will crawl them and take a very long time or hang.
+
+## 2. Common Folder Exclusions
+
+Adjust based on the project type:
+
+```bash
+# Python projects
+--folders-to-skip=".git,venv,.venv,__pycache__,.cache,dist,build,.tox,.eggs,.mypy_cache"
+
+# JavaScript/TypeScript projects
+--folders-to-skip=".git,node_modules,dist,build,.next,.cache,.turbo,coverage"
+
+# General catch-all
+--folders-to-skip=".git,node_modules,venv,.venv,__pycache__,.cache,dist,build,.next,.tox,vendor,third_party"
+```
+
+## 3. Filter by Specific Language
+
+```bash
+# Only count Python files
+pygount --suffix=py --format=summary .
+
+# Only count Python and YAML
+pygount --suffix=py,yaml,yml --format=summary .
+```
+
+## 4. Detailed File-by-File Output
+
+```bash
+# Default format shows per-file breakdown
+pygount --folders-to-skip=".git,node_modules,venv" .
+
+# Sort by code lines (pipe through sort)
+pygount --folders-to-skip=".git,node_modules,venv" . | sort -t$'\t' -k1 -nr | head -20
+```
+
+## 5. Output Formats
+
+```bash
+# Summary table (default recommendation)
+pygount --format=summary .
+
+# JSON output for programmatic use
+pygount --format=json .
+
+# Pipe-friendly: Language, file count, code, docs, empty, string
+pygount --format=summary . 2>/dev/null
+```
+
+## 6. Interpreting Results
+
+The summary table columns:
+- **Language** — detected programming language
+- **Files** — number of files of that language
+- **Code** — lines of actual code (executable/declarative)
+- **Comment** — lines that are comments or documentation
+- **%** — percentage of total
+
+Special pseudo-languages:
+- `__empty__` — empty files
+- `__binary__` — binary files (images, compiled, etc.)
+- `__generated__` — auto-generated files (detected heuristically)
+- `__duplicate__` — files with identical content
+- `__unknown__` — unrecognized file types
+
+## Pitfalls
+
+1. **Always exclude .git, node_modules, venv** — without `--folders-to-skip`, pygount will crawl everything and may take minutes or hang on large dependency trees.
+2. **Markdown shows 0 code lines** — pygount classifies all Markdown content as comments, not code. This is expected behavior.
+3. **JSON files show low code counts** — pygount may count JSON lines conservatively. For accurate JSON line counts, use `wc -l` directly.
+4. **Large monorepos** — for very large repos, consider using `--suffix` to target specific languages rather than scanning everything.