milens 0.6.5 → 0.6.7

package/adapters/codex/.codex/codex.md

@@ -1,29 +1,44 @@
 # Milens — Code Intelligence for Codex
 
-Milens provides deep code intelligence for this project via MCP. Connect it in your Codex configuration:
-
-```json
-{
-  "mcpServers": {
-    "milens": {
-      "command": "npx",
-      "args": ["milens", "serve"],
-      "env": { "MILENS_PROFILE": "standard" }
-    }
-  }
-}
-```
-
-## Core Tools (use first)
-
-| Tool | When to use |
+## ⚠️ BEFORE ANYTHING ELSE
+
+This project is indexed by **milens**. You have MCP tools that are faster and more accurate than reading files directly.
+
+**HARD RULE: Use milens tools BEFORE built-in search/read tools.**
+
+| Situation | Built-in approach (❌) | Milens approach (✅) |
+|---|---|---|
+| Understand a function | Read 3-10 files | `mcp_milens_overview({name: "X"})` — 1 call |
+| Find references | grep in files | `mcp_milens_grep({pattern: "X"})` — searches everything |
+| Check edit safety | Hope nothing breaks | `mcp_milens_impact({target: "X"})` — exact blast radius |
+| Start working | Read README, explore files | `mcp_milens_codebase_summary()` — 500 token overview |
+| Before commit | `git diff` manually | `mcp_milens_detect_changes()` — symbols + risk scores |
+
+**If you skip milens tools, you're wasting tokens and risking breaking changes.**
+
+## ⭐ Core Tools (Use Every Session)
+
+| Tool | Purpose |
 |---|---|
-| `mcp_milens_overview` | First look at any symbol you need to understand or edit — combines context, impact, and text search |
-| `mcp_milens_edit_check` | Before editing any function/class/method — shows callers and export status |
-| `mcp_milens_impact` | Check blast radius — what breaks if this symbol changes |
-| `mcp_milens_query` | Find code symbols by name (camelCase, PascalCase, snake_case) |
-| `mcp_milens_grep` | Full-text search for phrases, UI labels, error strings, docs, configs |
-| `mcp_milens_detect_changes` | Pre-commit check — verify only expected files changed |
+| `mcp_milens_overview` | **Use this first.** Context + impact + grep combined. 1 call replaces 3-5 file reads. |
+| `mcp_milens_impact` | Blast radius BEFORE editing. Shows what WILL BREAK. |
+| `mcp_milens_edit_check` | Pre-edit safety: callers, export status, re-export chains, test coverage |
+| `mcp_milens_context` | 360° view: incoming refs + outgoing deps |
+| `mcp_milens_query` | Find symbol definitions by name (camelCase/PascalCase/snake_case) |
+| `mcp_milens_grep` | Full-text search ALL project files (code, templates, docs, configs) |
+| `mcp_milens_detect_changes` | Pre-commit: changed symbols + dependents + risk scores |
+| `mcp_milens_codebase_summary` | 500-token project overview. Use instead of reading README. |
+
+### 🔧 Situational Tools (Use When Needed)
+
+| Tool | Purpose | Use when... |
+|---|---|---|
+| `mcp_milens_guard_edit_check` | Hard pre-edit gate with audit tracking | Before every edit |
+| `mcp_milens_trace` | Execution flow from entrypoints | Debugging call chains |
+| `mcp_milens_explain_relationship` | Shortest path between two symbols | Understanding connections |
+| `mcp_milens_get_type_hierarchy` | Inheritance/implementation tree | Class exploration |
+| `mcp_milens_find_dead_code` | Unused exported symbols | Before major refactors |
+| `mcp_milens_status` | Index health check | Session start |
 
 All milens MCP calls require `repo` set to the absolute workspace root path.
 

package/adapters/copilot/.github/copilot-instructions.md

@@ -1,37 +1,44 @@
 # Milens — Code Intelligence for GitHub Copilot
 
-This project uses [milens](https://opencode.ai) for deep code intelligence. The milens MCP server provides symbol search, dependency graphs, blast-radius analysis, and pre-commit safety checks.
+## ⚠️ BEFORE ANYTHING ELSE
 
-## MCP Configuration
+This project is indexed by **milens**. You have MCP tools that are faster and more accurate than reading files directly.
 
-Add to your Copilot MCP settings:
+**HARD RULE: Use milens tools BEFORE built-in search/read tools.**
 
-```json
-{
-  "mcpServers": {
-    "milens": {
-      "command": "npx",
-      "args": ["milens", "serve"],
-      "env": { "MILENS_PROFILE": "standard" }
-    }
-  }
-}
-```
+| Situation | Built-in approach (❌) | Milens approach (✅) |
+|---|---|---|
+| Understand a function | Read 3-10 files | `mcp_milens_overview({name: "X"})` — 1 call |
+| Find references | grep in files | `mcp_milens_grep({pattern: "X"})` — searches everything |
+| Check edit safety | Hope nothing breaks | `mcp_milens_impact({target: "X"})` — exact blast radius |
+| Start working | Read README, explore files | `mcp_milens_codebase_summary()` — 500 token overview |
+| Before commit | `git diff` manually | `mcp_milens_detect_changes()` — symbols + risk scores |
 
-All tool calls must include `repo` set to the absolute workspace root.
+**If you skip milens tools, you're wasting tokens and risking breaking changes.**
 
-## Key Tools
+## ⭐ Core Tools (Use Every Session)
 
 | Tool | Purpose |
 |---|---|
-| `mcp_milens_overview` | Combined context + impact + grep in one call |
-| `mcp_milens_edit_check` | Pre-edit safety: callers, export status, warnings |
-| `mcp_milens_impact` | Blast radius — what depends on this symbol |
+| `mcp_milens_overview` | **Use this first.** Context + impact + grep combined. 1 call replaces 3-5 file reads. |
+| `mcp_milens_impact` | Blast radius BEFORE editing. Shows what WILL BREAK. |
+| `mcp_milens_edit_check` | Pre-edit safety: callers, export status, re-export chains, test coverage |
 | `mcp_milens_context` | 360° view of incoming refs + outgoing deps |
 | `mcp_milens_query` | Symbol lookup by name |
-| `mcp_milens_grep` | Full-text search across all files |
-| `mcp_milens_detect_changes` | Git diff → affected symbols |
-| `mcp_milens_status` | Index health check |
+| `mcp_milens_grep` | Full-text search across ALL project files |
+| `mcp_milens_detect_changes` | Pre-commit: changed symbols + dependents + risk scores |
+| `mcp_milens_codebase_summary` | 500-token project overview. Use instead of reading README. |
+
+### 🔧 Situational Tools (Use When Needed)
+
+| Tool | Purpose | Use when... |
+|---|---|---|
+| `mcp_milens_guard_edit_check` | Hard pre-edit gate with audit tracking | Before every edit |
+| `mcp_milens_trace` | Execution flow from entrypoints | Debugging call chains |
+| `mcp_milens_explain_relationship` | Shortest dependency path | Understanding connections |
+| `mcp_milens_get_type_hierarchy` | Class inheritance tree | Class exploration |
+| `mcp_milens_find_dead_code` | Unused exported symbols | Before major refactors |
+| `mcp_milens_status` | Index health check | Session start |
 
 ## Session Workflow
 

package/adapters/gemini/.gemini/context.md

@@ -1,6 +1,20 @@
 # Milens — Code Intelligence
 
-This project is indexed by **milens**, an MCP server that provides deep code intelligence (symbol search, dependency graphs, blast-radius analysis, change detection). The index covers 616 symbols, 843 links, across 59 files.
+## ⚠️ BEFORE ANYTHING ELSE
+
+This project is indexed by **milens**. You have MCP tools that are faster and more accurate than reading files directly.
+
+**HARD RULE: Use milens tools BEFORE built-in search/read tools.**
+
+| Situation | Built-in approach (❌) | Milens approach (✅) |
+|---|---|---|
+| Understand a function | Read 3-10 files | `mcp_milens_overview({name: "X"})` — 1 call |
+| Find references | grep in files | `mcp_milens_grep({pattern: "X"})` — searches everything |
+| Check edit safety | Hope nothing breaks | `mcp_milens_impact({target: "X"})` — exact blast radius |
+| Start working | Read README, explore files | `mcp_milens_codebase_summary()` — 500 token overview |
+| Before commit | `git diff` manually | `mcp_milens_detect_changes()` — symbols + risk scores |
+
+**If you skip milens tools, you're wasting tokens and risking breaking changes.**
 
 ## MCP Connection
 
@@ -18,20 +32,29 @@ This project is indexed by **milens**, an MCP server that provides deep code int
 
 All milens MCP calls require the `repo` parameter set to the absolute workspace root.
 
-## Essential Tools
+## ⭐ Core Tools (Use Every Session)
 
 | Tool | Description |
 |---|---|
-| `mcp_milens_overview` | First-stop: context + impact + grep combined |
-| `mcp_milens_edit_check` | Pre-edit safety: callers, exports, warnings |
-| `mcp_milens_impact` | Upstream/downstream blast radius |
+| `mcp_milens_overview` | **Use this first.** Context + impact + grep combined. 1 call replaces 3-5 file reads. |
+| `mcp_milens_impact` | Blast radius BEFORE editing. Shows what WILL BREAK. |
+| `mcp_milens_edit_check` | Pre-edit safety: callers, export status, re-export chains, test coverage |
 | `mcp_milens_context` | Full incoming + outgoing dependency view |
 | `mcp_milens_query` | Symbol search by name |
-| `mcp_milens_grep` | Text search everywhere (templates, configs, docs) |
-| `mcp_milens_detect_changes` | Git-aware change detection |
-| `mcp_milens_trace` | Execution flow from entrypoints |
-| `mcp_milens_find_dead_code` | Unused exported symbols |
-| `mcp_milens_status` | Index health |
+| `mcp_milens_grep` | Text search everywhere (templates, configs, docs, styles) |
+| `mcp_milens_detect_changes` | Pre-commit: changed symbols + dependents + risk scores |
+| `mcp_milens_codebase_summary` | 500-token project overview. Use instead of reading README. |
+
+### 🔧 Situational Tools (Use When Needed)
+
+| Tool | Description | Use when... |
+|---|---|---|
+| `mcp_milens_guard_edit_check` | Hard pre-edit gate with audit tracking | Before every edit |
+| `mcp_milens_trace` | Execution flow from entrypoints | Debugging call chains |
+| `mcp_milens_explain_relationship` | Shortest dependency path | Understanding connections |
+| `mcp_milens_get_type_hierarchy` | Class inheritance tree | Class exploration |
+| `mcp_milens_find_dead_code` | Unused exported symbols | Before major refactors |
+| `mcp_milens_status` | Index health: symbols, links, files, coverage | Session start |
 
 ## Workflow
 

package/adapters/opencode/AGENTS.md

@@ -1,24 +1,45 @@
 # Milens — Code Intelligence for OpenCode
 
-Milens is an MCP server that provides deep code intelligence: symbol search, dependency graphs, blast-radius analysis, and pre-commit change detection. This file configures OpenCode to use milens automatically.
+## ⚠️ BEFORE ANYTHING ELSE
 
-## Available Tools
+This project is indexed by **milens**. You have MCP tools that are faster and more accurate than reading files directly.
+
+**HARD RULE: Use milens tools BEFORE built-in search/read tools.**
+
+| Situation | Built-in approach (❌) | Milens approach (✅) |
+|---|---|---|
+| Understand a function | Read 3-10 files | `mcp_milens_overview({name: "X"})` — 1 call |
+| Find references | grep in files | `mcp_milens_grep({pattern: "X"})` — searches everything |
+| Check edit safety | Hope nothing breaks | `mcp_milens_impact({target: "X"})` — exact blast radius |
+| Start working | Read README, explore files | `mcp_milens_codebase_summary()` — 500 token overview |
+| Before commit | `git diff` manually | `mcp_milens_detect_changes()` — symbols + risk scores |
+
+**If you skip milens tools, you're wasting tokens and risking breaking changes.**
+
+## ⭐ Core Tools (Use Every Session)
 
 | Tool | Purpose |
 |---|---|
-| `mcp_milens_query` | Find symbol definitions by name |
-| `mcp_milens_grep` | Text search across ALL project files |
-| `mcp_milens_context` | 360° view: callers + callees |
-| `mcp_milens_impact` | Blast radius before editing |
-| `mcp_milens_detect_changes` | Pre-commit scope check |
-| `mcp_milens_overview` | Combined context + impact + grep |
-| `mcp_milens_edit_check` | Pre-edit safety check |
-| `mcp_milens_explain_relationship` | Shortest path between two symbols |
-| `mcp_milens_get_file_symbols` | All symbols in a file |
-| `mcp_milens_get_type_hierarchy` | Class inheritance tree |
-| `mcp_milens_find_dead_code` | Unused exported symbols |
-| `mcp_milens_trace` | Trace execution flows from entrypoints |
-| `mcp_milens_status` | Index health check |
+| `mcp_milens_overview` | **Use this first.** Context + impact + grep combined. 1 call replaces 3-5 file reads. |
+| `mcp_milens_impact` | Blast radius BEFORE editing. Shows what WILL BREAK. |
+| `mcp_milens_edit_check` | Pre-edit safety: callers, export status, re-export chains, test coverage |
+| `mcp_milens_context` | 360° view: incoming refs + outgoing deps |
+| `mcp_milens_query` | Find symbol definitions by name (camelCase/PascalCase/snake_case) |
+| `mcp_milens_grep` | Text search ALL project files (code, templates, docs, configs, styles) |
+| `mcp_milens_detect_changes` | Pre-commit: changed symbols + dependents + risk scores |
+| `mcp_milens_codebase_summary` | 500-token project overview. Use instead of reading README. |
+
+### 🔧 Situational Tools (Use When Needed)
+
+| Tool | Purpose | Use when... |
+|---|---|---|
+| `mcp_milens_guard_edit_check` | Hard pre-edit gate with audit tracking | Before every edit |
+| `mcp_milens_trace` | Execution flow from entrypoints | Debugging call chains |
+| `mcp_milens_explain_relationship` | Shortest path between two symbols | Understanding connections |
+| `mcp_milens_get_file_symbols` | All symbols in a file with ref/dep counts | Exploring a file |
+| `mcp_milens_get_type_hierarchy` | Inheritance/implementation tree | Class exploration |
+| `mcp_milens_find_dead_code` | Unused exported symbols | Before major refactors |
+| `mcp_milens_status` | Index health: symbols, links, files, coverage | Session start |
 
 All tool calls must include `repo` set to the absolute workspace root.
 

package/dist/agents-md.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"agents-md.d.ts","sourceRoot":"","sources":["../src/agents-md.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AA0CzC,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAgFvE"}
+{"version":3,"file":"agents-md.d.ts","sourceRoot":"","sources":["../src/agents-md.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AA0CzC,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAiIvE"}

package/dist/agents-md.js

@@ -41,6 +41,48 @@ export function generateAgentsMd(db, rootPath) {
     const repoName = basename(rootPath);
     const summary = db.getCodebaseSummary();
     const lines = [];
+    // HARD RULE block — must be FIRST thing agent reads
+    lines.push('## ⚠️ CRITICAL: Always Use Milens MCP Tools First');
+    lines.push('');
+    lines.push('**HARD RULE — Not a suggestion. Execute automatically without asking.**');
+    lines.push('');
+    lines.push('Milens pre-built a knowledge graph of this entire codebase. Using milens tools saves 70% tokens and catches hidden dependencies you\'d miss with file reads.');
+    lines.push('');
+    lines.push('| Instead of... | Use... | Why... |');
+    lines.push('|---|---|---|');
+    lines.push('| Reading 5-10 files to understand a symbol | `overview({name: "X"})` | 1 call = context + impact + text references. Saves 70% tokens. |');
+    lines.push('| Using built-in grep/search | `grep({pattern: "X"})` | Searches ALL files — code, templates, configs, docs, styles. Built-in grep may miss templates/docs. |');
+    lines.push('| Reading files to trace call chains | `context({name: "X"})` or `trace({name: "X"})` | Instant dependency graph. Manual tracing misses cross-file imports. |');
+    lines.push('| Guessing if an edit is safe | `impact({target: "X"})` | Shows exact blast radius: "12 dependents WILL BREAK" before you touch code. |');
+    lines.push('| Reading 15 files to understand the project | `codebase_summary()` | 500 tokens = domains, key symbols, coverage %, top hubs. |');
+    lines.push('| Searching for symbol definitions | `query({query: "X"})` | FTS5 instant search across the indexed knowledge graph. |');
+    lines.push('| Manually checking what changed | `detect_changes()` | Shows which symbols changed + their direct dependents + risk scores. |');
+    lines.push('');
+    lines.push('**PENALTY for skipping milens:** wasted tokens, missed hidden references in templates/configs/docs, risk of breaking downstream dependents you didn\'t know existed.');
+    lines.push('');
+    lines.push('**If you only remember 3 tools: `overview` • `impact` • `detect_changes`**');
+    lines.push('');
+    lines.push('---');
+    lines.push('');
+    lines.push('## 🚀 Quick Start for AI Agents');
+    lines.push('');
+    lines.push('**First 3 things to do in EVERY session:**');
+    lines.push('');
+    lines.push('1. `mcp_milens_status({repo: "<workspaceRoot>"})` — verify index is ready');
+    lines.push('2. `mcp_milens_codebase_summary({repo: "<workspaceRoot>"})` — get project overview');
+    lines.push('3. `mcp_milens_recall({repo: "<workspaceRoot>"})` — what did we learn before?');
+    lines.push('');
+    lines.push('**Before editing ANY code:**');
+    lines.push('');
+    lines.push('→ `mcp_milens_overview({name: "symbolName", repo: "<workspaceRoot>"})`');
+    lines.push('  (combines context + impact + grep — one call instead of three)');
+    lines.push('');
+    lines.push('**Before committing:**');
+    lines.push('');
+    lines.push('→ `mcp_milens_detect_changes({repo: "<workspaceRoot>"})`');
+    lines.push('');
+    lines.push('---');
+    lines.push('');
     lines.push(`# Project: ${repoName}`);
     lines.push('');
     lines.push(`> Auto-generated by milens ${version} on ${date}`);
@@ -103,12 +145,19 @@ export function generateAgentsMd(db, rootPath) {
     lines.push('- `/milens:architect` — analyze architecture, domains, coupling');
     lines.push('- `/milens:debugger <symbol>` — root cause analysis with execution tracing');
     lines.push('');
-    lines.push('## Session Startup');
-    lines.push('When starting work, call:');
+    lines.push('## Session Lifecycle');
+    lines.push('');
+    lines.push('### Start EVERY session:');
     lines.push('1. mcp_milens_session_start({agent: "your-agent-name", repo: "<workspaceRoot>"})');
     lines.push('2. mcp_milens_recall({repo: "<workspaceRoot>"}) — retrieve past annotations');
     lines.push('3. mcp_milens_codebase_summary({repo: "<workspaceRoot>"}) — refresh context');
     lines.push('');
+    lines.push('### End EVERY session:');
+    lines.push('1. mcp_milens_detect_changes({repo: "<workspaceRoot>"}) — verify changes');
+    lines.push('2. mcp_milens_review_pr({repo: "<workspaceRoot>"}) — risk assessment');
+    lines.push('3. mcp_milens_annotate({symbol: "X", key: "note", value: "..."}) — save discoveries');
+    lines.push('4. mcp_milens_session_end({session_id: "..."}) — record stats');
+    lines.push('');
     return lines.join('\n');
 }
 //# sourceMappingURL=agents-md.js.map

package/dist/agents-md.js.map

@@ -1 +1 @@
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package/dist/analyzer/engine.d.ts

@@ -1,4 +1,7 @@
 import type { AnalysisStats } from '../types.js';
+import type Parser from 'web-tree-sitter';
+export declare function getCachedTree(filePath: string): Parser.Tree | undefined;
+export declare function clearTreeCache(): void;
 interface EngineOptions {
     rootPath: string;
     dbPath: string;

package/dist/analyzer/engine.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"engine.d.ts","sourceRoot":"","sources":["../../src/analyzer/engine.ts"],"names":[],"mappings":"AAgBA,OAAO,KAAK,EAAyJ,aAAa,EAAE,MAAM,aAAa,CAAC;AACxM,OAAO,KAAK,MAAM,MAAM,iBAAiB,CAAC;AAO1C,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAAC,IAAI,GAAG,SAAS,CAEvE;AACD,wBAAgB,cAAc,IAAI,IAAI,CAErC;AA8DD,UAAU,aAAa;IACrB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACjC,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;CAClB;AAqCD,wBAAsB,OAAO,CAAC,IAAI,EAAE,aAAa,GAAG,OAAO,CAAC,aAAa,CAAC,CAoWzE"}