metaharness 0.4.12 → 0.4.14

package/dist/analyze-repo.d.ts

@@ -9,6 +9,7 @@ export interface RepoProfile {
     buildCommands: string[];
     testCommands: string[];
     tokens: string[];
+    hasVerifiedTestFiles?: boolean;
 }
 export interface PolicyProfile {
     defaultDeny: boolean;

package/dist/analyze-repo.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"analyze-repo.d.ts","sourceRoot":"","sources":["../src/analyze-repo.ts"],"names":[],"mappings":"AAiBA,OAAO,EAAY,KAAK,IAAI,EAAE,MAAM,YAAY,CAAC;AAKjD,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,MAAM,EAAE,OAAO,CAAC;IAChB,SAAS,EAAE,OAAO,CAAC;IACnB,QAAQ,EAAE,OAAO,CAAC;IAClB,KAAK,EAAE,OAAO,CAAC;IACf,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,MAAM,EAAE,MAAM,EAAE,CAAC;IAMjB,oBAAoB,CAAC,EAAE,OAAO,CAAC;CAChC;AAED,MAAM,WAAW,aAAa;IAC5B,WAAW,EAAE,OAAO,CAAC;IACrB,YAAY,EAAE,OAAO,CAAC;IACtB,UAAU,EAAE,OAAO,CAAC;IACpB,cAAc,EAAE,OAAO,CAAC;IACxB,2BAA2B,EAAE,OAAO,CAAC;IACrC,aAAa,EAAE,MAAM,CAAC;IACtB,mBAAmB,EAAE,MAAM,CAAC;IAC5B,QAAQ,EAAE,OAAO,CAAC;CACnB;AAED,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,CAAC,EAAE,MAAM,GAAG,YAAY,GAAG,QAAQ,GAAG,IAAI,CAAC;IACvD,cAAc,CAAC,EAAE,QAAQ,CAAC;IAC1B,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,GAAG,EAAE,KAAK,GAAG,OAAO,GAAG,QAAQ,CAAC;CACjC;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,IAAI,EAAE,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,MAAM,EAAE,SAAS,GAAG,QAAQ,CAAC;IAC7B,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,GAAG,EAAE,KAAK,GAAG,OAAO,GAAG,QAAQ,CAAC;IAChC,MAAM,EAAE,aAAa,CAAC;IACtB,WAAW,EAAE,MAAM,CAAC;IACpB,iBAAiB,EAAE;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,UAAU,CAAC;QAAC,SAAS,EAAE,UAAU,CAAA;KAAE,EAAE,CAAC;CACpF;AAeD,eAAO,MAAM,UAAU,EAAE,SAAS,EASjC,CAAC;AAeF,sFAAsF;AACtF,wBAAgB,SAAS,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CA+B7D;AAUD,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,WAAW,CAqCrF;AAgBD,MAAM,WAAW,MAAM;IACrB,SAAS,EAAE,SAAS,CAAC;IACrB,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,wBAAgB,eAAe,CAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,EAAE,CAYjG;AAiBD,wBAAgB,aAAa,CAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,WAAW,CAqBlG;AA8CD,wBAAgB,cAAc,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,SAAS,CAuBvF;AAED,6EAA6E;AAC7E,wBAAgB,yBAAyB,IAAI,IAAI,CAEhD;AAID,wBAAsB,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,EAAE,CAAA;CAAE,CAAC,CAsE/F"}

package/dist/analyze-repo.js

@@ -40,6 +40,14 @@ export const ARCHETYPES = [
 // --- file inventory (safe, analysis-only) ----------------------------------
 const HIGH_SIGNAL = ['README.md', 'package.json', 'Cargo.toml', 'pyproject.toml', 'requirements.txt', 'go.mod', 'CONTRIBUTING.md', '.mcp.json'];
 const IGNORE_DIRS = new Set(['node_modules', '.git', 'dist', 'target', 'build', 'coverage', '.next', '.cache', 'vendor']);
+function dirExists(root, sub) {
+    try {
+        return existsSync(join(root, sub)) && statSync(join(root, sub)).isDirectory();
+    }
+    catch {
+        return false;
+    }
+}
 /** Read high-signal files + cheap structural probes. Never reads arbitrary source. */
 export function inventory(dir) {
     const root = resolve(dir);
@@ -61,6 +69,12 @@ export function inventory(dir) {
         files['.claude/settings.json'] = '{}';
     if (existsSync(join(root, '.codex')))
         files['.codex/config.toml'] = '';
+    // Real fs evidence a test directory exists (mirrors score.ts's dirExists
+    // check) — read by analyzeFiles() into hasVerifiedTestFiles, since language
+    // detection alone (a pyproject.toml/go.mod) doesn't mean any test file
+    // actually exists (Dream Cycle 2026-08-25).
+    if (['__tests__', 'tests', 'test'].some((d) => dirExists(root, d)))
+        files['__test_dir__'] = 'present';
     // Cheap top-level dir scan so structure signals work without deep walks.
     try {
         for (const e of readdirSync(root)) {
@@ -122,6 +136,7 @@ export function analyzeFiles(name, files) {
         buildCommands,
         testCommands,
         tokens: tokenize(text),
+        hasVerifiedTestFiles: !!files['__test_dir__'],
     };
 }
 // --- scoring (pure) --------------------------------------------------------

package/dist/analyze-repo.js.map

@@ -1 +1 @@
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package/dist/genome-scorers.d.ts

@@ -19,10 +19,27 @@ export interface McpRisk {
 export declare function scoreMcpRisk(profile: RepoProfile, plan: HarnessPlan): McpRisk;
 /**
  * Test confidence is a soft heuristic — we can't actually run the tests
- * (the analyze-repo invariant forbids code execution), so we score based on:
- *  - presence of declared test commands (the repo can run tests at all)
- *  - presence of CI (someone has wired the tests to run on push)
- *  - heuristic: more test commands = more diverse tests
+ * (the analyze-repo invariant forbids code execution), so we score based on
+ * REAL filesystem evidence a test directory exists (profile.hasVerifiedTestFiles,
+ * populated in analyze-repo.ts from a tests/__tests__/test dir scan), not just
+ * that a language/manifest was detected.
+ *
+ * Before Dream Cycle 2026-08-25, this credited `testCommands.length > 0`
+ * directly — but testCommands is inferred purely from language/manifest
+ * presence (e.g. a `pyproject.toml` unconditionally pushes 'pytest'), so a
+ * repo with a test-capable manifest and zero actual test files still scored
+ * 0.5-0.8. External research (arXiv:2606.18168, arXiv:2607.18057; SWE-bench's
+ * real-execution harness; the kodustech/agent-readiness OSS scorer) confirms
+ * this "manifest implies tests" shortcut is a known, actively-flagged failure
+ * mode. This package's own sibling `score.ts::scoreTestCoverage` already
+ * weights real directory evidence as its largest single component (50/100,
+ * vs. 25 each for a declared npm-test script and CI, which still apply
+ * independently) — narrower parity than "requires" it outright, but this
+ * candidate moves genome-scorers.ts's weaker, purely-inferred version toward
+ * that same real-evidence-first shape rather than claiming full agreement.
+ *
+ * Without verified test files, CI alone earns only a small "infra exists but
+ * unconfirmed" credit rather than the prior full test-command credit.
  */
 export declare function scoreTestConfidence(profile: RepoProfile): number;
 /**

package/dist/genome-scorers.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"genome-scorers.d.ts","sourceRoot":"","sources":["../src/genome-scorers.ts"],"names":[],"mappings":"AAcA,OAAO,KAAK,EAAE,WAAW,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAIlE;;;;GAIG;AACH,wBAAgB,gBAAgB,CAAC,CAAC,EAAE,WAAW,GAAG,MAAM,CAcvD;AAID;;;;GAIG;AACH,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,WAAW,GAAG,MAAM,EAAE,CAWtF;AAID,MAAM,MAAM,UAAU,GAAG,oBAAoB,GAAG,kBAAkB,GAAG,QAAQ,GAAG,KAAK,CAAC;AAEtF,MAAM,WAAW,OAAO;IACtB,OAAO,EAAE,UAAU,CAAC;IACpB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,wBAAgB,YAAY,CAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,WAAW,GAAG,OAAO,CAQ7E;AAID;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAMhE;AAID;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,WAAW,GAAG,MAAM,CASrF"}

package/dist/genome-scorers.js

@@ -76,15 +76,32 @@ export function scoreMcpRisk(profile, plan) {
 // --- 4. test confidence ----------------------------------------------------
 /**
  * Test confidence is a soft heuristic — we can't actually run the tests
- * (the analyze-repo invariant forbids code execution), so we score based on:
- *  - presence of declared test commands (the repo can run tests at all)
- *  - presence of CI (someone has wired the tests to run on push)
- *  - heuristic: more test commands = more diverse tests
+ * (the analyze-repo invariant forbids code execution), so we score based on
+ * REAL filesystem evidence a test directory exists (profile.hasVerifiedTestFiles,
+ * populated in analyze-repo.ts from a tests/__tests__/test dir scan), not just
+ * that a language/manifest was detected.
+ *
+ * Before Dream Cycle 2026-08-25, this credited `testCommands.length > 0`
+ * directly — but testCommands is inferred purely from language/manifest
+ * presence (e.g. a `pyproject.toml` unconditionally pushes 'pytest'), so a
+ * repo with a test-capable manifest and zero actual test files still scored
+ * 0.5-0.8. External research (arXiv:2606.18168, arXiv:2607.18057; SWE-bench's
+ * real-execution harness; the kodustech/agent-readiness OSS scorer) confirms
+ * this "manifest implies tests" shortcut is a known, actively-flagged failure
+ * mode. This package's own sibling `score.ts::scoreTestCoverage` already
+ * weights real directory evidence as its largest single component (50/100,
+ * vs. 25 each for a declared npm-test script and CI, which still apply
+ * independently) — narrower parity than "requires" it outright, but this
+ * candidate moves genome-scorers.ts's weaker, purely-inferred version toward
+ * that same real-evidence-first shape rather than claiming full agreement.
+ *
+ * Without verified test files, CI alone earns only a small "infra exists but
+ * unconfirmed" credit rather than the prior full test-command credit.
  */
 export function scoreTestConfidence(profile) {
-    let s = 0;
-    if (profile.testCommands.length > 0)
-        s += 0.5;
+    if (!profile.hasVerifiedTestFiles)
+        return profile.hasCi ? 0.1 : 0;
+    let s = 0.5;
     if (profile.testCommands.length >= 2)
         s += 0.2;
     if (profile.hasCi)

package/dist/genome-scorers.js.map

@@ -1 +1 @@
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package/dist/mcp-scan.d.ts.map

@@ -1 +1 @@
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package/dist/mcp-scan.js

@@ -76,8 +76,21 @@ export function scanMcp(dir) {
         if (a === '*' || a === 'mcp__*' || a === 'mcp__*__*') {
             add({ id: 'wildcard-tool-perm', severity: 'high', title: `Over-broad tool permission: ${a}`, detail: 'Wildcard MCP permissions grant every tool on every server. Scope to mcp__<server>__*.' });
         }
-        if (/^Bash\((rm|curl|wget|sudo|chmod|ssh)\b/i.test(a) && !a.includes('status') && !a.includes('--dry-run')) {
-            add({ id: 'risky-bash-allow', severity: 'medium', title: `Risky shell allow-rule: ${a}`, detail: 'Allowing rm/curl/wget/sudo/ssh broadly is dangerous; narrow the glob.' });
+        if (a === 'Bash' || a === 'Bash(*)') {
+            // Fully unscoped — no command restriction at all, strictly more dangerous than the interpreter
+            // list below. No current generator wires exactly this string into .claude/settings.json (the
+            // web-ui's claudeSettings() hardcodes a scoped Bash(npx <name>*), and host-config.ts's own
+            // 'Bash(*)' push only reaches non-claude-code config shapes mcp-scan doesn't read) — this is
+            // defense-in-depth against the config shape itself, not a report of a live generator bug.
+            add({ id: 'unrestricted-bash-allow', severity: 'high', title: `Unrestricted shell allow-rule: ${a}`, detail: 'This allow-rule places no restriction on which commands Bash may run — equivalent to allowShell=true regardless of what .harness/mcp-policy.json says. Scope to specific commands.' });
+        }
+        else if (/^Bash\((rm|curl|wget|sudo|chmod|ssh|python3?|node|ruby|perl|bash|sh)\b/i.test(a) && !a.includes('status') && !a.includes('--dry-run')) {
+            // python/node/ruby/perl/bash/sh are arbitrary-code-execution interpreters, not narrow file
+            // operations like rm/curl — an unscoped allow-rule for one is a live gap today: the vertical:ai
+            // template's .claude/settings.json.tmpl ships 'Bash(python *)' in its allow list as shown by a
+            // real `metaharness --template vertical:ai` scaffold, and it was previously unflagged by any
+            // check in this loop (not the exact-wildcard check above, not this regex before this fix).
+            add({ id: 'risky-bash-allow', severity: 'medium', title: `Risky shell allow-rule: ${a}`, detail: 'Allowing rm/curl/wget/sudo/ssh, or an unscoped script interpreter, broadly is dangerous; narrow the glob.' });
         }
     }
     const guardsEnv = deny.some((d) => /\.env/.test(d));

package/dist/mcp-scan.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "metaharness",
-  "version": "0.4.12",
+  "version": "0.4.14",
   "description": "MetaHarness — mint a custom AI agent harness from any repo. Browser Studio + `npx metaharness` CLI. Runs on Claude Code, Codex, pi.dev, Hermes, OpenClaw, RVM, Prime Agent.",
   "homepage": "https://github.com/ruvnet/agent-harness-generator",
   "repository": {