metaharness 0.3.0 → 0.3.2

package/dist/score.js.map

@@ -1 +1 @@
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package/dist/threat-model.d.ts.map

@@ -1 +1 @@
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package/dist/threat-model.js

@@ -25,6 +25,7 @@
 import { existsSync, statSync, writeFileSync, readFileSync } from 'node:fs';
 import { join, resolve } from 'node:path';
 import { scanMcp } from './mcp-scan.js';
+import { redactSecretsDeep } from './redact.js';
 function safeReadJson(path) {
     try {
         if (!existsSync(path))
@@ -148,19 +149,9 @@ export function formatThreatModel(tm) {
 }
 // --- sanitisation (ADR-031) ------------------------------------------------
 const SECRET_RE = /(secret|token|key|password|passphrase)/i;
+// GH #4 (HIGH-2): redact by KEY name AND by VALUE shape (redact.ts — single source of truth, #7).
 function sanitise(v) {
-    if (v == null)
-        return v;
-    if (Array.isArray(v))
-        return v.map(sanitise);
-    if (typeof v === 'object') {
-        const out = {};
-        for (const [k, val] of Object.entries(v)) {
-            out[k] = SECRET_RE.test(k) ? '[REDACTED]' : sanitise(val);
-        }
-        return out;
-    }
-    return v;
+    return redactSecretsDeep(v, { keyRe: SECRET_RE, replacement: '[REDACTED]' });
 }
 // --- dispatch --------------------------------------------------------------
 function usage() {

package/dist/threat-model.js.map

@@ -1 +1 @@
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package/dist/with-wasm.js

@@ -92,53 +92,53 @@ export function wireWasm(cratePath, targetDir) {
     }
     // bin/wasm.mjs: a CLI that loads the CJS wasm shim and exposes each exported
     // function as a subcommand (`node bin/wasm.mjs <fn> [json-args...]`).
-    const loader = `#!/usr/bin/env node
-// Auto-generated by metaharness --with-wasm. Loads the bundled wasm-pack crate
-// (CommonJS, --target nodejs) and exposes its exports as subcommands.
-import { createRequire } from 'node:module';
-import { fileURLToPath } from 'node:url';
-import { dirname, join } from 'node:path';
-
-const require = createRequire(import.meta.url);
-const here = dirname(fileURLToPath(import.meta.url));
-const wasm = require(join(here, '..', 'wasm', ${JSON.stringify(entry)}));
-
-const fns = Object.keys(wasm).filter((k) => typeof wasm[k] === 'function');
-const [, , sub, ...rest] = process.argv;
-
-if (!sub || sub === '--help' || sub === '-h') {
-  console.log('Wasm capability commands (from your crate):');
-  for (const f of fns) console.log('  node bin/wasm.mjs ' + f + ' [arg ...]');
-  process.exit(sub ? 0 : 1);
-}
-if (typeof wasm[sub] !== 'function') {
-  console.error('Unknown wasm export "' + sub + '". Available: ' + fns.join(', '));
-  process.exit(2);
-}
-// Args are passed through; numeric-looking args are coerced to numbers.
-const args = rest.map((a) => (a !== '' && !Number.isNaN(Number(a)) ? Number(a) : a));
-const out = wasm[sub](...args);
-console.log(typeof out === 'string' ? out : JSON.stringify(out, null, 2));
+    const loader = `#!/usr/bin/env node
+// Auto-generated by metaharness --with-wasm. Loads the bundled wasm-pack crate
+// (CommonJS, --target nodejs) and exposes its exports as subcommands.
+import { createRequire } from 'node:module';
+import { fileURLToPath } from 'node:url';
+import { dirname, join } from 'node:path';
+
+const require = createRequire(import.meta.url);
+const here = dirname(fileURLToPath(import.meta.url));
+const wasm = require(join(here, '..', 'wasm', ${JSON.stringify(entry)}));
+
+const fns = Object.keys(wasm).filter((k) => typeof wasm[k] === 'function');
+const [, , sub, ...rest] = process.argv;
+
+if (!sub || sub === '--help' || sub === '-h') {
+  console.log('Wasm capability commands (from your crate):');
+  for (const f of fns) console.log('  node bin/wasm.mjs ' + f + ' [arg ...]');
+  process.exit(sub ? 0 : 1);
+}
+if (typeof wasm[sub] !== 'function') {
+  console.error('Unknown wasm export "' + sub + '". Available: ' + fns.join(', '));
+  process.exit(2);
+}
+// Args are passed through; numeric-looking args are coerced to numbers.
+const args = rest.map((a) => (a !== '' && !Number.isNaN(Number(a)) ? Number(a) : a));
+const out = wasm[sub](...args);
+console.log(typeof out === 'string' ? out : JSON.stringify(out, null, 2));
 `;
     mkdirSync(join(targetDir, 'bin'), { recursive: true });
     writeFileSync(join(targetDir, 'bin', 'wasm.mjs'), loader);
     // A doctor check the harness can surface: confirm the wasm loads + lists fns.
-    const doctorCheck = `// Auto-generated by metaharness --with-wasm. Returns the loadable wasm exports
-// (used by \`harness doctor\` to confirm the wasm capability is wired).
-import { createRequire } from 'node:module';
-import { fileURLToPath } from 'node:url';
-import { dirname, join } from 'node:path';
-const require = createRequire(import.meta.url);
-const here = dirname(fileURLToPath(import.meta.url));
-export function wasmDoctor() {
-  try {
-    const wasm = require(join(here, '..', 'wasm', ${JSON.stringify(entry)}));
-    const fns = Object.keys(wasm).filter((k) => typeof wasm[k] === 'function');
-    return { ok: true, exports: fns };
-  } catch (e) {
-    return { ok: false, error: e instanceof Error ? e.message : String(e) };
-  }
-}
+    const doctorCheck = `// Auto-generated by metaharness --with-wasm. Returns the loadable wasm exports
+// (used by \`harness doctor\` to confirm the wasm capability is wired).
+import { createRequire } from 'node:module';
+import { fileURLToPath } from 'node:url';
+import { dirname, join } from 'node:path';
+const require = createRequire(import.meta.url);
+const here = dirname(fileURLToPath(import.meta.url));
+export function wasmDoctor() {
+  try {
+    const wasm = require(join(here, '..', 'wasm', ${JSON.stringify(entry)}));
+    const fns = Object.keys(wasm).filter((k) => typeof wasm[k] === 'function');
+    return { ok: true, exports: fns };
+  } catch (e) {
+    return { ok: false, error: e instanceof Error ? e.message : String(e) };
+  }
+}
 `;
     mkdirSync(join(targetDir, 'src'), { recursive: true });
     writeFileSync(join(targetDir, 'src', 'wasm-doctor.mjs'), doctorCheck);

package/dist/witness-client.d.ts

@@ -15,6 +15,13 @@ export interface WitnessManifest {
 export interface VerificationResult {
     valid: boolean;
     reason?: string;
+    /**
+     * GH #4 (HIGH-1): true when the manifest passed SHAPE checks but its signature was NOT
+     * cryptographically verified (no kernel `witnessVerify` available — the shape-only degraded mode).
+     * `valid` stays true so read-only diagnostics (`verify`/`doctor`) keep reporting shape validity, but a
+     * caller that acts on the signature (publish) MUST treat `unverified` as "not actually signed".
+     */
+    unverified?: boolean;
 }
 /**
  * Verify a witness manifest by delegating to the kernel's wasm/native

package/dist/witness-client.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"witness-client.d.ts","sourceRoot":"","sources":["../src/witness-client.ts"],"names":[],"mappings":"AAgBA,MAAM,WAAW,YAAY;IAC3B,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,eAAe;IAC9B,MAAM,EAAE,CAAC,CAAC;IACV,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,YAAY,EAAE,CAAC;IACxB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,kBAAkB;IACjC,KAAK,EAAE,OAAO,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB;;;;;OAKG;IACH,UAAU,CAAC,EAAE,OAAO,CAAC;CACtB;AAED;;;;;;GAMG;AACH,wBAAsB,aAAa,CAAC,QAAQ,EAAE,OAAO,GAAG,OAAO,CAAC,kBAAkB,CAAC,CA8ClF;AAED;;;GAGG;AACH,wBAAsB,aAAa,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC;IAChE,QAAQ,EAAE,eAAe,CAAC;IAC1B,MAAM,EAAE,kBAAkB,CAAC;CAC5B,CAAC,CAaD;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,UAAU,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAQ7D"}

package/dist/witness-client.js

@@ -61,7 +61,11 @@ export async function verifyWitness(manifest) {
         // shape-only verification as a degraded mode (CI is the source of
         // truth; local-dev can skip the crypto verify).
     }
-    return { valid: true, reason: 'shape verified; kernel not loaded (degraded)' };
+    return {
+        valid: true,
+        unverified: true,
+        reason: 'shape verified; kernel witnessVerify unavailable — signature NOT cryptographically checked (degraded)',
+    };
 }
 /**
  * Read and verify a witness.json file. Returns the parsed manifest on

package/dist/witness-client.js.map

@@ -1 +1 @@
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package/genomes/README.md

@@ -1,23 +1,23 @@
-# Packaged executor genomes
-
-Promoted cheap-tier executor operating policies, shipped with the `metaharness` CLI so
-`metaharness learn --seed cand6` can seed a learning run from the current promoted base
-(ADR-235 — cheap-tier optimization is a managed learning service).
-
-## genome-promoted-cand6-edit-by-midpoint.json
-
-- **Id:** `cand-6` (parent `cand-5`, mutation class `test_policy`) — promoted **2026-07-02**
-  as the cheap code-repair executor base (ADR-228; model `z-ai/glm-5.2`, SWE-bench code-repair).
-- **Primary behavioral change (generalized):** *edit-by-midpoint* — make at least one real
-  code edit by the midpoint of the step budget; never end with an empty patch.
-- **Honest holdout evidence:** unseen-holdout gold **2/12 → 3/12** (strict superset, zero
-  regressions); holdout empty-patch rate **0.583 → 0.333** (the load-bearing win).
-- **Not claimed:** the secondary rerun-thrash suppression did NOT generalize (holdout
-  thrash 2 → 4). Kept in the policy, not claimed as an out-of-sample win.
-- **Scope honesty:** this is a **positive screening signal**, below the pre-registered
-  ≥10/24 "useful" bar — it funds confirmatory runs, it is not a headline capability claim.
-
-Canonical source + full promotion record: `packages/darwin-mode/bench/swebench/gepa/`
-(`genome-promoted-cand6-edit-by-midpoint.json`, `PROMOTION.md`) in the metaharness repo.
-The frozen seed baseline (`seed-genome.json`) is never modified; comparisons always run
-against it.
+# Packaged executor genomes
+
+Promoted cheap-tier executor operating policies, shipped with the `metaharness` CLI so
+`metaharness learn --seed cand6` can seed a learning run from the current promoted base
+(ADR-235 — cheap-tier optimization is a managed learning service).
+
+## genome-promoted-cand6-edit-by-midpoint.json
+
+- **Id:** `cand-6` (parent `cand-5`, mutation class `test_policy`) — promoted **2026-07-02**
+  as the cheap code-repair executor base (ADR-228; model `z-ai/glm-5.2`, SWE-bench code-repair).
+- **Primary behavioral change (generalized):** *edit-by-midpoint* — make at least one real
+  code edit by the midpoint of the step budget; never end with an empty patch.
+- **Honest holdout evidence:** unseen-holdout gold **2/12 → 3/12** (strict superset, zero
+  regressions); holdout empty-patch rate **0.583 → 0.333** (the load-bearing win).
+- **Not claimed:** the secondary rerun-thrash suppression did NOT generalize (holdout
+  thrash 2 → 4). Kept in the policy, not claimed as an out-of-sample win.
+- **Scope honesty:** this is a **positive screening signal**, below the pre-registered
+  ≥10/24 "useful" bar — it funds confirmatory runs, it is not a headline capability claim.
+
+Canonical source + full promotion record: `packages/darwin-mode/bench/swebench/gepa/`
+(`genome-promoted-cand6-edit-by-midpoint.json`, `PROMOTION.md`) in the metaharness repo.
+The frozen seed baseline (`seed-genome.json`) is never modified; comparisons always run
+against it.

package/genomes/genome-promoted-cand6-edit-by-midpoint.json

@@ -1,27 +1,27 @@
-{
-  "version": 1,
-  "meta": {
-    "id": "cand-6",
-    "parent": "cand-5",
-    "source": "extracted from agentic-loop.mjs buildAgenticSystem + advisor-loop.mjs (ADR-228 §3)",
-    "notes": "escalation/verifier components present but OFF in solo (D0) rendering unless enabled",
-    "mutated": "test_policy"
-  },
-  "components": {
-    "executor_preamble": "You are an autonomous bug-fixing agent working inside a real repository. Each turn, output EXACTLY ONE JSON object on a single line — a tool call — and NOTHING else (no prose, no markdown, no XML). Do NOT use <invoke> XML syntax. Do NOT prefix with >>>. Just the raw JSON object. Tools:",
-    "tool_ls": "{\"tool\":\"ls\",\"dir\":\"path/\"}            list a directory",
-    "tool_read": "{\"tool\":\"read\",\"path\":\"f.{{ext}}\",\"start\":1,\"end\":80}  read a file (range optional; omit for whole file)",
-    "tool_grep": "{\"tool\":\"grep\",\"pattern\":\"reg\",\"glob\":\"{{glob}}\"}     search the repo (glob optional)",
-    "tool_edit": "{\"tool\":\"edit\",\"path\":\"f.{{ext}}\",\"search\":\"<exact lines incl. indentation>\",\"replace\":\"<new lines>\"}  apply a search/replace edit",
-    "tool_line_edit": "{\"tool\":\"line_edit\",\"path\":\"f.{{ext}}\",\"start\":12,\"end\":15,\"replace\":\"<new text for lines 12-15>\"}  replace an inclusive LINE RANGE (robust — line numbers come from `read`)",
-    "tool_run_tests": "{\"tool\":\"run_tests\"}                   run the failing tests against your current edits; returns the trace",
-    "tool_submit": "{\"tool\":\"submit\"}                      finalize your patch and stop",
-    "retrieval_policy": "Strategy: explore just enough to locate the fix, then commit to an edit. Exploration is capped hard — never repeat this mistake: do not let read/grep/ls count exceed 4 before your first edit attempt, regardless of confidence. If step 5 arrives with no edit, make your best-guess edit immediately — an imperfect edit beats an empty patch.\n\nRules:\n1. Hard cap: max 4 read/grep/ls actions before the first edit. Track count explicitly; on the 4th such action, immediately plan and make an edit next — no exceptions, no \"one more grep.\"\n2. Never repeat an identical read/grep on the same target — track what you've already seen.\n3. Before editing, read the full function/class (not just the matched line) so you see sibling conditionals, related branches, mode/orientation flags, and other call sites the fix must also handle.\n4. Gold fixes often span multiple hunks in the same file: after making your first edit, scan the same function/class and nearby similar code (e.g. parallel branches, mirrored assignments, adjacent attributes) for a second spot that needs the analogous change before running tests.\n5. After run_tests fails, do not immediately rerun without changing something: re-read the failure trace, diagnose which assumption was wrong (missing import, unhandled branch, off-by-one, missing companion hunk), adjust the edit, then rerun. Never issue 2+ consecutive run_tests without an intervening edit.\n6. If run_tests fails twice on the same edit, broaden your view: look for other spots in the same file or an imported module that mirror the changed logic — the gold fix likely touches more than one line/branch.\n7. Do not edit test files. Only submit after run_tests passes.",
-    "edit_policy": "PREFER line_edit (use the line numbers from `read`) — it is far more reliable than search/replace, which must match the file character-for-character. If an `edit` fails to match, switch to line_edit.",
-    "test_policy": "Never edit test files. Use them only to understand expected behavior.\n\nBy the midpoint of your step budget, make at least one real code edit — do not spend the whole budget reading/grepping. If you cannot find the exact fix location, edit your best-guess file anyway rather than ending with an empty patch.\n\nWhen editing, copy the exact surrounding lines (whitespace, indentation, imports) from the file before changing them — mismatched context is why edits fail to apply. Re-check the target lines exist verbatim before submitting a line_edit.\n\nAfter every edit, run the tests. Before submitting, tests must have been run at least once and must pass.\n\nIf a test run fails, read the failure output carefully and diagnose the actual cause — trace which line/condition triggered it. Do not rerun the same tests unchanged more than twice: two identical failures mean your fix is wrong, not that the test needs retrying. On the second failure, stop, re-read the traceback plus the relevant source lines again, and change your actual code logic, not just re-execute.\n\nBefore submitting, confirm your edit is in the file that the failure trace points to and that it addresses the root cause (not just a symptom or unrelated line). Only submit once tests pass, or you are certain — after inspecting the failure trace — that the remaining failure is unrelated to your fix.",
-    "protocol_reminder": "Output ONE JSON action per turn.",
-    "tool_advise": "{\"tool\":\"advise\",\"question\":\"<what you are unsure about — the plan, the root cause, or whether your fix is right>\"}  consult your STRONG read-only advisor; it sees your full transcript + current diff and replies with guidance",
-    "escalation_policy": "You are a fast agent with a STRONG senior ADVISOR on call. The advisor cannot run tools or edit — it only critiques. Consult it when uncertain about the plan, the root cause, or fix correctness — never for mechanical steps you can just do. Its reply is guidance; YOU still choose and execute every action. Your final submit is automatically reviewed by the advisor.",
-    "verifier_prompt": "You are a READ-ONLY senior engineer reviewing an autonomous junior bug-fixing agent mid-task. You will receive: the problem statement, the agent's full action/observation transcript, the current working-tree diff, and a PHASE tag. You cannot execute tools or edit files, and you must NOT output JSON tool calls — reply in plain prose, ≤300 words: (1) is the diagnosis/root-cause right? (2) is the diff correct, minimal, non-test-touching? (3) the exact next 1-3 actions (file, line, what to change — e.g. which .{{ext}} file). Reference only files present in the transcript or diff. If PHASE is pre-submit, your FIRST line must be exactly `VERDICT: APPROVE` or `VERDICT: REVISE — <one-line reason>`."
-  }
+{
+  "version": 1,
+  "meta": {
+    "id": "cand-6",
+    "parent": "cand-5",
+    "source": "extracted from agentic-loop.mjs buildAgenticSystem + advisor-loop.mjs (ADR-228 §3)",
+    "notes": "escalation/verifier components present but OFF in solo (D0) rendering unless enabled",
+    "mutated": "test_policy"
+  },
+  "components": {
+    "executor_preamble": "You are an autonomous bug-fixing agent working inside a real repository. Each turn, output EXACTLY ONE JSON object on a single line — a tool call — and NOTHING else (no prose, no markdown, no XML). Do NOT use <invoke> XML syntax. Do NOT prefix with >>>. Just the raw JSON object. Tools:",
+    "tool_ls": "{\"tool\":\"ls\",\"dir\":\"path/\"}            list a directory",
+    "tool_read": "{\"tool\":\"read\",\"path\":\"f.{{ext}}\",\"start\":1,\"end\":80}  read a file (range optional; omit for whole file)",
+    "tool_grep": "{\"tool\":\"grep\",\"pattern\":\"reg\",\"glob\":\"{{glob}}\"}     search the repo (glob optional)",
+    "tool_edit": "{\"tool\":\"edit\",\"path\":\"f.{{ext}}\",\"search\":\"<exact lines incl. indentation>\",\"replace\":\"<new lines>\"}  apply a search/replace edit",
+    "tool_line_edit": "{\"tool\":\"line_edit\",\"path\":\"f.{{ext}}\",\"start\":12,\"end\":15,\"replace\":\"<new text for lines 12-15>\"}  replace an inclusive LINE RANGE (robust — line numbers come from `read`)",
+    "tool_run_tests": "{\"tool\":\"run_tests\"}                   run the failing tests against your current edits; returns the trace",
+    "tool_submit": "{\"tool\":\"submit\"}                      finalize your patch and stop",
+    "retrieval_policy": "Strategy: explore just enough to locate the fix, then commit to an edit. Exploration is capped hard — never repeat this mistake: do not let read/grep/ls count exceed 4 before your first edit attempt, regardless of confidence. If step 5 arrives with no edit, make your best-guess edit immediately — an imperfect edit beats an empty patch.\n\nRules:\n1. Hard cap: max 4 read/grep/ls actions before the first edit. Track count explicitly; on the 4th such action, immediately plan and make an edit next — no exceptions, no \"one more grep.\"\n2. Never repeat an identical read/grep on the same target — track what you've already seen.\n3. Before editing, read the full function/class (not just the matched line) so you see sibling conditionals, related branches, mode/orientation flags, and other call sites the fix must also handle.\n4. Gold fixes often span multiple hunks in the same file: after making your first edit, scan the same function/class and nearby similar code (e.g. parallel branches, mirrored assignments, adjacent attributes) for a second spot that needs the analogous change before running tests.\n5. After run_tests fails, do not immediately rerun without changing something: re-read the failure trace, diagnose which assumption was wrong (missing import, unhandled branch, off-by-one, missing companion hunk), adjust the edit, then rerun. Never issue 2+ consecutive run_tests without an intervening edit.\n6. If run_tests fails twice on the same edit, broaden your view: look for other spots in the same file or an imported module that mirror the changed logic — the gold fix likely touches more than one line/branch.\n7. Do not edit test files. Only submit after run_tests passes.",
+    "edit_policy": "PREFER line_edit (use the line numbers from `read`) — it is far more reliable than search/replace, which must match the file character-for-character. If an `edit` fails to match, switch to line_edit.",
+    "test_policy": "Never edit test files. Use them only to understand expected behavior.\n\nBy the midpoint of your step budget, make at least one real code edit — do not spend the whole budget reading/grepping. If you cannot find the exact fix location, edit your best-guess file anyway rather than ending with an empty patch.\n\nWhen editing, copy the exact surrounding lines (whitespace, indentation, imports) from the file before changing them — mismatched context is why edits fail to apply. Re-check the target lines exist verbatim before submitting a line_edit.\n\nAfter every edit, run the tests. Before submitting, tests must have been run at least once and must pass.\n\nIf a test run fails, read the failure output carefully and diagnose the actual cause — trace which line/condition triggered it. Do not rerun the same tests unchanged more than twice: two identical failures mean your fix is wrong, not that the test needs retrying. On the second failure, stop, re-read the traceback plus the relevant source lines again, and change your actual code logic, not just re-execute.\n\nBefore submitting, confirm your edit is in the file that the failure trace points to and that it addresses the root cause (not just a symptom or unrelated line). Only submit once tests pass, or you are certain — after inspecting the failure trace — that the remaining failure is unrelated to your fix.",
+    "protocol_reminder": "Output ONE JSON action per turn.",
+    "tool_advise": "{\"tool\":\"advise\",\"question\":\"<what you are unsure about — the plan, the root cause, or whether your fix is right>\"}  consult your STRONG read-only advisor; it sees your full transcript + current diff and replies with guidance",
+    "escalation_policy": "You are a fast agent with a STRONG senior ADVISOR on call. The advisor cannot run tools or edit — it only critiques. Consult it when uncertain about the plan, the root cause, or fix correctness — never for mechanical steps you can just do. Its reply is guidance; YOU still choose and execute every action. Your final submit is automatically reviewed by the advisor.",
+    "verifier_prompt": "You are a READ-ONLY senior engineer reviewing an autonomous junior bug-fixing agent mid-task. You will receive: the problem statement, the agent's full action/observation transcript, the current working-tree diff, and a PHASE tag. You cannot execute tools or edit files, and you must NOT output JSON tool calls — reply in plain prose, ≤300 words: (1) is the diagnosis/root-cause right? (2) is the diff correct, minimal, non-test-touching? (3) the exact next 1-3 actions (file, line, what to change — e.g. which .{{ext}} file). Reference only files present in the transcript or diff. If PHASE is pre-submit, your FIRST line must be exactly `VERDICT: APPROVE` or `VERDICT: REVISE — <one-line reason>`."
+  }
 }