memory-journal-mcp 4.3.1 → 4.4.0

package/dist/vector/VectorSearchManager.js.map

@@ -1 +1 @@
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

package/docker-compose.yml

@@ -1,37 +1,46 @@
-version: '3.8'
-
-services:
-  memory-journal-mcp:
-    build: .
-    container_name: memory-journal-mcp
-    volumes:
-      # Mount local data directory for persistent SQLite database
-      - ./data:/app/data
-      # Mount git config for context bundle functionality
-      - ${HOME}/.gitconfig:/root/.gitconfig:ro
-      # Mount SSH keys for GitHub access (optional)
-      - ${HOME}/.ssh:/root/.ssh:ro
-    environment:
-      - DB_PATH=/app/data/memory_journal.db
-      - PYTHONPATH=/app
-    stdin_open: true
-    tty: true
-    # For MCP stdio communication
-    command: python src/server.py
-    restart: unless-stopped
-
-  # Alternative service for testing without git/ssh mounts
-  memory-journal-mcp-basic:
-    build: .
-    container_name: memory-journal-mcp-basic
-    volumes:
-      - ./data:/app/data
-    environment:
-      - DB_PATH=/app/data/memory_journal.db
-      - PYTHONPATH=/app
-    stdin_open: true
-    tty: true
-    command: python src/server.py
-    restart: unless-stopped
-    profiles:
-      - basic
+services:
+  memory-journal-mcp:
+    build: .
+    container_name: memory-journal-mcp
+    volumes:
+      # Mount local data directory for persistent SQLite database
+      - ./data:/app/data:rw,noexec,nosuid,nodev
+    environment:
+      - DB_PATH=/app/data/memory_journal.db
+      # Optional: GitHub integration
+      # - GITHUB_TOKEN=ghp_your_token_here
+      # - GITHUB_REPO_PATH=/app/repo
+      # Optional: CORS origin (default: *)
+      # - MCP_CORS_ORIGIN=http://localhost:3000
+    stdin_open: true
+    tty: true
+    # MCP stdio communication (default transport)
+    command: ['node', 'dist/cli.js']
+    restart: unless-stopped
+
+  # HTTP transport service for remote access
+  memory-journal-mcp-http:
+    build: .
+    container_name: memory-journal-mcp-http
+    volumes:
+      - ./data:/app/data:rw,noexec,nosuid,nodev
+    environment:
+      - DB_PATH=/app/data/memory_journal.db
+      - MCP_HOST=0.0.0.0
+      # Optional: GitHub integration
+      # - GITHUB_TOKEN=ghp_your_token_here
+      # - GITHUB_REPO_PATH=/app/repo
+      # Optional: CORS origin (default: *)
+      # - MCP_CORS_ORIGIN=http://localhost:3000
+    ports:
+      - '3000:3000'
+    command:
+      ['node', 'dist/cli.js', '--transport', 'http', '--port', '3000', '--server-host', '0.0.0.0']
+    restart: unless-stopped
+    deploy:
+      resources:
+        limits:
+          memory: 1g
+          cpus: '1.0'
+    profiles:
+      - http

package/mcp-config-example.json

@@ -13,8 +13,6 @@
             "env": {
                 "MEMORY_JOURNAL_MCP_TOOL_FILTER": "tool_group_name_here",
                 "GITHUB_TOKEN": "your_github_token_here",
-                "GITHUB_ORG_TOKEN": "your_org_token_here",
-                "DEFAULT_ORG": "your-org-name",
                 "DEFAULT_PROJECT_NUMBER": "1"
             }
         }

package/package.json

@@ -1,6 +1,6 @@
 {
     "name": "memory-journal-mcp",
-    "version": "4.3.1",
+    "version": "4.4.0",
     "description": "Project context management for AI-assisted development - Persistent knowledge graphs and intelligent context recall across fragmented AI threads",
     "type": "module",
     "main": "dist/index.js",
@@ -17,7 +17,8 @@
         "check": "npm run lint && npm run typecheck",
         "test": "vitest run",
         "test:watch": "vitest",
-        "test:coverage": "vitest run --coverage"
+        "test:coverage": "vitest run --coverage",
+        "bench": "vitest bench --run"
     },
     "keywords": [
         "mcp",
@@ -49,35 +50,35 @@
         "node": ">=24.0.0"
     },
     "dependencies": {
-        "@modelcontextprotocol/sdk": "^1.26.0",
+        "@modelcontextprotocol/sdk": "^1.27.1",
         "@octokit/graphql": "^9.0.3",
         "@octokit/rest": "^22.0.1",
         "@xenova/transformers": "^2.17.2",
         "commander": "^14.0.3",
         "cors": "^2.8.6",
         "express": "^5.2.1",
-        "simple-git": "^3.28.0",
-        "sql.js": "^1.12.0",
+        "simple-git": "^3.32.3",
+        "sql.js": "^1.14.0",
         "vectra": "^0.12.3",
         "zod": "^4.3.6"
     },
     "devDependencies": {
-        "@eslint/js": "^9.39.2",
+        "@eslint/js": "^10.0.1",
         "@types/cors": "^2.8.19",
         "@types/express": "^5.0.6",
-        "@types/node": "^25.2.0",
+        "@types/node": "^25.3.2",
         "@vitest/coverage-v8": "^4.0.18",
-        "eslint": "^9.39.2",
+        "eslint": "^10.0.2",
         "globals": "^17.3.0",
         "typescript": "^5.9.3",
-        "typescript-eslint": "^8.54.0",
+        "typescript-eslint": "^8.56.1",
         "vitest": "^4.0.17"
     },
     "overrides": {
-        "axios": "^1.13.2",
+        "axios": "^1.13.5",
         "brace-expansion": "^2.0.2",
         "glob": "^11.1.0",
-        "tar": "^7.5.4",
+        "tar": "^7.5.8",
         "tmp": "^0.2.4"
     }
 }

package/releases/v4.3.1.md

@@ -0,0 +1,69 @@
+# v4.3.1 - OutputSchema Fix & CVE Remediations
+
+Released: February 5, 2026
+
+## Highlights
+
+- **OutputSchema Fix** — Fixed `get_cross_project_insights` validation error on empty results
+- **Security Patches** — Remediated 3 CVEs in Docker image (libexpat CRITICAL, tar HIGH)
+- **Dependency Updates** — MCP SDK 1.26.0 and other updates
+
+---
+
+## Fixed
+
+### `get_cross_project_insights` OutputSchema Validation
+
+When no projects met the minimum entry threshold, the tool returned only `message` and `projects` fields, failing outputSchema validation.
+
+**Now returns all required fields:**
+
+- `project_count: 0`
+- `total_entries: 0`
+- `inactive_projects: []`
+- `time_distribution: []`
+- `message` (with explanation)
+- `projects: []`
+
+---
+
+## Security
+
+### CVE-2026-24515 (libexpat) — CRITICAL
+
+Null pointer dereference vulnerability. Fixed by explicitly installing libexpat from Alpine edge repositories in Dockerfile.
+
+### CVE-2026-25210 (libexpat) — MEDIUM
+
+Integer overflow leading to information disclosure. Same fix as CVE-2026-24515.
+
+### CVE-2026-24842 (tar) — HIGH
+
+Path traversal vulnerability in npm's bundled tar package. Updated from 7.5.4 → 7.5.7 in Dockerfile.
+
+---
+
+## Changed
+
+### Dependency Updates
+
+| Package                     | From    | To     |
+| --------------------------- | ------- | ------ |
+| `@modelcontextprotocol/sdk` | 1.25.3  | 1.26.0 |
+| `@types/node`               | 25.0.10 | 25.2.0 |
+| `commander`                 | 14.0.2  | 14.0.3 |
+| `globals`                   | 17.1.0  | 17.3.0 |
+
+---
+
+## Upgrade
+
+```bash
+# npm
+npm update -g memory-journal-mcp
+
+# Docker
+docker pull writenotenow/memory-journal-mcp:v4.3.1
+```
+
+**Full Changelog**: https://github.com/neverinfamous/memory-journal-mcp/wiki/CHANGELOG

package/releases/v4.4.0.md

@@ -0,0 +1,120 @@
+# v4.4.0 - Milestones, Insights, Security Hardening & Performance
+
+Released: February 27, 2026
+
+## Highlights
+
+- **GitHub Milestones Integration** — Full CRUD support with 5 new tools, 2 new resources, and briefing/status integration
+- **Repository Insights/Traffic Tool** — New `get_repo_insights` tool and `memory://github/insights` resource for monitoring stars, forks, clones, views, referrers, and popular paths (14-day rolling data)
+- **HTTP Transport Security Hardening** — Configurable CORS, request body size limits, security headers, session timeout, and error log token scrubbing
+- **Performance Improvements** — Debounced database save, paginated vector rebuild, parallel batch embedding, GitHub API TTL cache, and startup deduplication
+- **15+ Bug Fixes** — Including `memory://significant` sort correctness, `delete_entry` permanent delete, JournalEntry GitHub metadata exposure, and `list_tags` zero-count filtering
+
+---
+
+## Added
+
+### GitHub Milestones Integration
+
+Full lifecycle management for GitHub Milestones:
+
+- **5 new tools**: `get_github_milestones`, `get_github_milestone`, `create_github_milestone`, `update_github_milestone`, `delete_github_milestone`
+- **2 new resources**: `memory://github/milestones` (list) and `memory://milestones/{number}` (detail)
+- Briefing and status resources now include milestone progress data
+- `create_github_issue_with_entry` accepts optional `milestone_number` parameter
+
+### Repository Insights/Traffic
+
+- **New tool**: `get_repo_insights` with token-efficient `sections` parameter
+- **New resource**: `memory://github/insights` — compact summary (~150 tokens)
+- Surfaces stars, forks, watchers, clones, views, top referrers, and popular pages
+- Extended 10-minute cache TTL for slowly-changing traffic data
+
+### Server Host Bind Parameter
+
+- New `--server-host` CLI option and `MCP_HOST` / `HOST` environment variables
+- Defaults to `localhost`; set to `0.0.0.0` for container deployments
+
+### Performance Benchmarking Suite
+
+- New `npm run bench` script using `vitest bench` for baseline performance measurement
+
+---
+
+## Improved
+
+- **`get_entry_by_id` Importance Scoring Breakdown** — Returns weighted component contributions
+- **`get_cross_project_insights` Inactive Threshold Visibility** — Self-documenting `inactiveThresholdDays` field
+- **Database I/O — Debounced Save** — 500ms debounce batches rapid writes into single disk flush
+- **Vector Index Rebuild** — Paginated fetching (200 per page) + parallel batch embedding (5 at a time) + sequential insertion
+- **Server Startup — `getTools()` Deduplication** — Eliminated duplicate call during startup
+- **GitHub API — TTL Response Cache** — 5-minute cache for read methods with automatic invalidation on mutations
+
+---
+
+## Fixed
+
+- **`memory://significant` Importance Sort** — Fixed resource returning timestamp-sorted instead of importance-sorted entries when >20 entries exist
+- **`memory://instructions` Active Tool Count** — Fixed hardcoded 3-tool fallback; now uses `getAllToolNames()`
+- **`memory://health` Tool Count** — Dynamic computation from `TOOL_GROUPS` instead of hardcoded value
+- **`delete_entry` Permanent Delete** — Now works on previously soft-deleted entries via `getEntryByIdIncludeDeleted()`
+- **`delete_entry` Existence Check (P154)** — Pre-checks entry existence before mutation
+- **`link_entries` Existence Check (P154)** — Pre-checks both source and target entry existence
+- **`visualize_relationships` Disambiguation (P154)** — Clear "Entry not found" message for nonexistent entries
+- **`list_tags` Zero-Count Filtering** — No longer returns orphan tags with zero usage
+- **`get_github_issue` Missing Milestone Field** — Now maps `issue.milestone` from API response
+- **`JournalEntry` GitHub Metadata** — 10 GitHub fields now included in all tool responses
+- **`delete_github_milestone` Structured Error** — Returns proper `DeleteMilestoneOutputSchema` on failure
+- **`ServerInstructions.ts` Entry Types** — Updated from 7 stale types to full 13-type union
+- **Docker Hub Short Description** — Corrected "HTTPS" → "HTTP/SSE"
+
+---
+
+## Security
+
+- **HTTP Transport Hardening** — Configurable CORS (`--cors-origin`), 1MB request body limit, `X-Content-Type-Options: nosniff` + `X-Frame-Options: DENY`, 30-min session timeout
+- **Error Log Token Scrubbing** — Automatic sanitization of GitHub tokens and Authorization headers
+- **CVE-2026-26960 (tar)** — Updated npm's bundled tar → 7.5.8 (HIGH, path traversal CVSS 7.1)
+- **GHSA-w7fw-mjwx-w883 (qs)** — Updated qs 6.14.1 → 6.14.2 (low, arrayLimit bypass DoS)
+- **GHSA-43fc-jf86-j433 (axios)** — Override to 1.13.5 (DoS via `__proto__` key)
+- **SECURITY.md Rewrite** — Complete rewrite for TypeScript era
+- **docker-compose.yml Rewrite** — Removed Python-era configuration, added secure mounts
+- **Dockerfile Healthcheck** — Replaced no-op healthcheck with `process.exit(0)` validation
+
+---
+
+## CI/CD
+
+- Removed Dependabot auto-merge workflow — manual review required
+- Trivy Action updated to 0.34.0
+- CI test matrix aligned to `[24.x, 25.x]` matching `engines.node: >=24.0.0`
+- Blocking `npm audit` — known vulnerabilities now fail the pipeline
+- Blocking secret scanning — verified leaks now fail the pipeline
+
+---
+
+## Dependencies
+
+| Package                     | From   | To             |
+| --------------------------- | ------ | -------------- |
+| `@eslint/js`                | 9.39.2 | 10.0.1 (major) |
+| `@modelcontextprotocol/sdk` | 1.26.0 | 1.27.1 (minor) |
+| `@types/node`               | 25.2.0 | 25.3.2 (minor) |
+| `eslint`                    | 9.39.2 | 10.0.2 (major) |
+| `simple-git`                | 3.28.0 | 3.32.3 (minor) |
+| `sql.js`                    | 1.12.0 | 1.14.0 (minor) |
+| `typescript-eslint`         | 8.54.0 | 8.56.1 (minor) |
+
+---
+
+## Upgrade
+
+```bash
+# npm
+npm update -g memory-journal-mcp
+
+# Docker
+docker pull writenotenow/memory-journal-mcp:v4.4.0
+```
+
+**Full Changelog**: https://github.com/neverinfamous/memory-journal-mcp/wiki/CHANGELOG

package/server.json

@@ -3,12 +3,12 @@
     "name": "io.github.neverinfamous/memory-journal-mcp",
     "title": "Memory Journal MCP",
     "description": "MCP server– Project memory system with GitHub-aware context, knowledge graphs, and CI/PR timelines",
-    "version": "4.3.1",
+    "version": "4.4.0",
     "packages": [
         {
             "registryType": "oci",
-            "identifier": "docker.io/writenotenow/memory-journal-mcp:v4.3.1",
-            "version": "4.3.1",
+            "identifier": "docker.io/writenotenow/memory-journal-mcp:v4.4.0",
+            "version": "4.4.0",
             "transport": {
                 "type": "stdio"
             }

package/src/cli.ts

@@ -15,37 +15,47 @@ program
     .version(pkg.version)
     .option('--transport <type>', 'Transport type: stdio or http', 'stdio')
     .option('--port <number>', 'HTTP port (for http transport)', '3000')
+    .option('--server-host <host>', 'Server bind host for HTTP transport (default: localhost)')
     .option('--stateless', 'Use stateless HTTP mode (no session management)')
     .option('--db <path>', 'Database path', './memory_journal.db')
     .option('--tool-filter <filter>', 'Tool filter string (e.g., "starter", "core,search")')
     .option('--default-project <number>', 'Default GitHub Project number')
     .option('--auto-rebuild-index', 'Rebuild vector index on server startup')
+    .option('--cors-origin <origin>', 'CORS allowed origin for HTTP transport (default: *)')
     .option('--log-level <level>', 'Log level: debug, info, warning, error', 'info')
     .action(
         async (options: {
             transport: string
             port: string
+            serverHost?: string
             stateless?: boolean
             db: string
             toolFilter?: string
             defaultProject: string
             autoRebuildIndex?: boolean
+            corsOrigin?: string
             logLevel: string
         }) => {
             // Set log level
             logger.setLevel(options.logLevel as 'debug' | 'info' | 'warning' | 'error')
 
+            // Resolve host: CLI flag > env var > default (localhost)
+            const host =
+                options.serverHost ?? process.env['MCP_HOST'] ?? process.env['HOST'] ?? undefined
+
             logger.info('Starting Memory Journal MCP Server', {
                 module: 'CLI',
                 transport: options.transport,
                 stateless: options.stateless ?? false,
                 db: options.db,
+                ...(host ? { host } : {}),
             })
 
             try {
                 await createServer({
                     transport: options.transport as 'stdio' | 'http',
                     port: parseInt(options.port, 10),
+                    host,
                     statelessHttp: options.stateless === true,
                     dbPath: options.db,
                     toolFilter: options.toolFilter,
@@ -56,6 +66,7 @@ program
                           : undefined,
                     autoRebuildIndex:
                         options.autoRebuildIndex ?? process.env['AUTO_REBUILD_INDEX'] === 'true',
+                    corsOrigin: options.corsOrigin,
                 })
             } catch (error) {
                 logger.error('Failed to start server', {