memorix 1.1.7 → 1.1.8

package/dist/memcode-runtime/CHANGELOG.md

@@ -2,6 +2,19 @@
 
 All notable changes to this project will be documented in this file.
 
+## [1.1.8] - 2026-07-08
+
+### Added
+- **Agent integration doctor and repair** -- Added `memorix doctor agents` and `memorix repair agents` to inspect and repair Memorix-owned agent integration files. The doctor flags stale MCP command paths, missing Claude `alwaysLoad`, missing `memorix` MCP entries, and outdated Memory Autopilot guidance without printing environment secrets.
+
+### Changed
+- **Memory Autopilot adoption** -- Setup-generated agent guidance now makes `memorix_project_context` the default first step for non-trivial coding work before progress files, dev logs, broad file reads, or git archaeology.
+
+### Fixed
+- **Claude Code local MCP repair** -- `memorix doctor agents` and `memorix repair agents` now inspect and repair Claude Code 2.x project-private local MCP entries in `~/.claude.json`, replacing stale worktree commands with `memorix serve` and `alwaysLoad: true`.
+- **Cleaner CodeGraph Memory briefs** -- CodeGraph Lite and Memory Autopilot now ignore `.tmp`, nested `.worktrees`, and `.claude/worktrees` directories, so suggested reads point at the real project instead of local caches or agent scratch worktrees.
+- **All-scope doctor noise** -- Agent doctor now treats one healthy local, project, or global scope as sufficient in all-scope mode, while still flagging genuinely stale or repairable configs.
+
 ## [1.1.7] - 2026-07-07
 
 ### Added

package/dist/memcode-runtime/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@memorix/memcode",
-	"version": "1.1.7",
+	"version": "1.1.8",
 	"description": "Memorix-native coding agent CLI with terminal chat, project memory, hooks, and session management",
 	"type": "module",
 	"piConfig": {
@@ -34,9 +34,9 @@
 		"prepublishOnly": "npm run clean && npm run build"
 	},
 	"dependencies": {
-		"@memorix/agent-core": "1.1.7",
-		"@memorix/ai": "1.1.7",
-		"@memorix/tui": "1.1.7",
+		"@memorix/agent-core": "1.1.8",
+		"@memorix/ai": "1.1.8",
+		"@memorix/tui": "1.1.8",
 		"@opentui/core": "^0.3.4",
 		"@opentui/react": "^0.3.4",
 		"@silvia-odwyer/photon-node": "0.3.4",

package/dist/sdk.js

@@ -9342,7 +9342,8 @@ function walk(root, exclude, maxFiles) {
       const rel = normalizeCodePath(relative(root, abs));
       if (isExcluded(rel, exclude)) continue;
       if (entry.isDirectory()) {
-        if (entry.name === ".git" || entry.name === "node_modules") continue;
+        if (entry.name === ".git" || entry.name === ".worktrees" || entry.name === ".tmp" || entry.name === "node_modules") continue;
+        if (rel === ".claude/worktrees" || rel.startsWith(".claude/worktrees/")) continue;
         visit(abs);
         if (out.length >= maxFiles) return;
         continue;
@@ -9434,7 +9435,10 @@ async function indexProjectLite(options) {
     "coverage/**",
     ".next/**",
     ".turbo/**",
-    ".git/**"
+    ".git/**",
+    ".tmp/**",
+    ".worktrees/**",
+    ".claude/worktrees/**"
   ];
   const maxFiles = options.maxFiles ?? 5e3;
   const indexedAt = (/* @__PURE__ */ new Date()).toISOString();
@@ -9647,7 +9651,8 @@ function normalizePath2(path20) {
   return path20.replace(/\\/g, "/");
 }
 function isGeneratedPath(path20) {
-  return /(^|\/)(dist|build|coverage|\.next|\.turbo|node_modules)\//i.test(normalizePath2(path20));
+  const normalized = normalizePath2(path20);
+  return /(^|\/)(dist|build|coverage|\.next|\.turbo|node_modules|\.git|\.tmp|\.worktrees)(\/|$)/i.test(normalized) || /(^|\/)\.claude\/worktrees(\/|$)/i.test(normalized);
 }
 function suggestedReadRank(path20) {
   const normalized = normalizePath2(path20);
@@ -10365,7 +10370,8 @@ function timestampOf(observation) {
   return Date.parse(observation.updatedAt ?? observation.createdAt ?? "") || 0;
 }
 function isGeneratedPath2(path20) {
-  return /(^|\/)(dist|build|coverage|\.next|\.turbo|node_modules)\//i.test(path20.replace(/\\/g, "/"));
+  const normalized = path20.replace(/\\/g, "/");
+  return /(^|\/)(dist|build|coverage|\.next|\.turbo|node_modules|\.git|\.tmp|\.worktrees)(\/|$)/i.test(normalized) || /(^|\/)\.claude\/worktrees(\/|$)/i.test(normalized);
 }
 function relevanceScore(observation, taskTokens) {
   if (taskTokens.length === 0) return 0;
@@ -14555,7 +14561,7 @@ var init_official_skills = __esm({
           "",
           "## Search Rules",
           "",
-          "- Use `memorix_project_context` before broad continuation work, unfamiliar code changes, ad-hoc file reads, or dev-log reads. Pass the user's actual task so Memorix can choose a bugfix, feature, release, onboarding, refactor, docs, test, or general brief. Start by reading its suggested files.",
+          "- Default first step for non-trivial coding work: call `memorix_project_context` before progress files, dev-log reads, ad-hoc file reads, or git archaeology. Pass the user's actual task so Memorix can choose a bugfix, feature, release, onboarding, refactor, docs, test, or general brief. Start by reading its suggested files.",
           "- In Claude Code headless/print-mode, an initial MCP `pending` status is not a failure by itself. Prefer MCP first: use the client's tool discovery/dynamic loading to find `memorix_project_context` when it is not in the first visible tool list.",
           '- Run `memorix context --task "<task>"` from the shell only after MCP is unavailable, disabled, or not discoverable, and pass the user\'s real task text. Do not skip memory, wait indefinitely on `pending`, or hand-write tool-call syntax.',
           "- Use `memorix_search` for a specific decision, bug, file, or prior change that the project context did not answer.",
@@ -14866,6 +14872,7 @@ var init_audit = __esm({
 var installers_exports = {};
 __export(installers_exports, {
   detectInstalledAgents: () => detectInstalledAgents,
+  getAgentRulesPath: () => getAgentRulesPath,
   getGlobalConfigPath: () => getGlobalConfigPath,
   getHookStatus: () => getHookStatus,
   getProjectConfigPath: () => getProjectConfigPath,
@@ -15732,7 +15739,7 @@ function getAgentRulesContent(agent, scope = "project") {
   let frontmatter = "";
   const contextNoun = scope === "global" ? "workspace" : "project";
   const title = scope === "global" ? "# Memorix \u2014 Memory Tools for Active Workspaces" : "# Memorix \u2014 Project Memory Tools";
-  const intro = scope === "global" ? "Use Memorix when the active workspace has Memorix tools available and prior context would materially help. Do not assume every workspace is configured for Memorix." : "This repository is configured to use Memorix for persistent cross-session memory. Memory tools are available when you need context from prior sessions or when you learn something worth saving.";
+  const intro = scope === "global" ? "Use Memorix when the active workspace has Memorix tools available and prior context would materially help. For non-trivial coding work, Memory Autopilot is the default entry point before local progress notes or broad file exploration. Do not assume every workspace is configured for Memorix." : "This repository is configured to use Memorix for persistent cross-session memory. For non-trivial coding work, Memory Autopilot is the default entry point before local progress notes or broad file exploration.";
   if (agent === "windsurf") {
     frontmatter = "---\ntrigger: always_on\n---\n\n";
   } else if (agent === "cursor") {
@@ -15750,7 +15757,7 @@ alwaysApply: true
     "",
     "## Start with Memory Autopilot",
     "",
-    `For starting or continuing code work, use \`memorix_project_context\` with the user's actual task before ad-hoc file reads, dev-log reads, or git archaeology. Memorix will choose a task-lensed brief (bugfix, feature, release, onboarding, refactor, docs, test, or general). Treat its "Start here" files as the first ${contextNoun} files to inspect.`,
+    `Default first step for non-trivial coding work: call \`memorix_project_context\` with the user's actual task before progress files, dev-log reads, ad-hoc file reads, or git archaeology. Memorix will choose a task-lensed brief (bugfix, feature, release, onboarding, refactor, docs, test, or general). Treat its "Start here" files as the first ${contextNoun} files to inspect.`,
     "",
     'If the MCP tool is not visible yet but the client supports tool discovery or dynamic loading, search/select `memorix_project_context` first. Run `memorix context --task "<task>"` only after MCP is unavailable, disabled, or not discoverable, and pass the user\'s real task text. Do not skip memory, wait indefinitely on MCP startup, or hand-write tool-call syntax.',
     "",
@@ -19917,7 +19924,7 @@ The path should point to a directory containing a .git folder.`
   };
   const server = existingServer ?? new McpServer({
     name: "memorix",
-    version: true ? "1.1.7" : "1.0.1"
+    version: true ? "1.1.8" : "1.0.1"
   });
   const originalRegisterTool = server.registerTool.bind(server);
   server.registerTool = ((name, ...args) => {