memorandum-mcp 0.1.0

package/dist/logger.js

@@ -0,0 +1,22 @@
+/**
+ * Logger setup for Memorandum MCP server.
+ *
+ * Uses pino with stderr transport (stdout is reserved for MCP protocol).
+ */
+import pino from 'pino';
+/**
+ * Create a pino logger that writes to stderr.
+ * @param level - Log level (default: "info").
+ * @returns Configured pino logger instance.
+ */
+export function createLogger(level = 'info') {
+    return pino({
+        name: 'memorandum',
+        level,
+        transport: {
+            target: 'pino/file',
+            options: { destination: 2 }, // stderr
+        },
+    });
+}
+//# sourceMappingURL=logger.js.map

package/dist/logger.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"logger.js","sourceRoot":"","sources":["../src/logger.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,IAAI,MAAM,MAAM,CAAC;AAExB;;;;GAIG;AACH,MAAM,UAAU,YAAY,CAAC,QAAgB,MAAM;IACjD,OAAO,IAAI,CAAC;QACV,IAAI,EAAE,YAAY;QAClB,KAAK;QACL,SAAS,EAAE;YACT,MAAM,EAAE,WAAW;YACnB,OAAO,EAAE,EAAE,WAAW,EAAE,CAAC,EAAE,EAAE,SAAS;SACvC;KACF,CAAC,CAAC;AACL,CAAC"}

package/dist/semantic-index.d.ts

@@ -0,0 +1,126 @@
+import type { Logger } from 'pino';
+import type { Embedder } from './embedder.js';
+import type { VectorStore } from './vector-store.js';
+import type { MemoryStore } from './store.js';
+import type { DocumentStore } from './document-store.js';
+import type { EmbeddingQueue } from './embedding-queue.js';
+import type { SearchResult, SearchFilterOptions, IndexStatus } from './semantic-types.js';
+/**
+ * High-level semantic search index that coordinates the Embedder, VectorStore,
+ * and EmbeddingQueue to index and search facts and documents.
+ */
+export declare class SemanticIndex {
+    private readonly embedder;
+    private readonly vectorStore;
+    private readonly logger;
+    private memoryStore;
+    private documentStore;
+    private embeddingQueue;
+    constructor(embedder: Embedder, vectorStore: VectorStore, logger: Logger);
+    /** Assigns the embedding queue used for batched, asynchronous indexing. */
+    setEmbeddingQueue(queue: EmbeddingQueue): void;
+    /** The identifier of the embedding model currently in use. */
+    get modelId(): string;
+    /** Assigns the memory store used for fact lookups during reindex/prune. */
+    setMemoryStore(store: MemoryStore): void;
+    /** Assigns the document store used for document lookups during reindex/prune. */
+    setDocumentStore(store: DocumentStore): void;
+    /**
+     * Detects embedding dimensions by running a test embedding,
+     * then loads the vector index from disk.
+     */
+    initialize(): Promise<void>;
+    /**
+     * Enqueues a document for asynchronous embedding via the EmbeddingQueue.
+     * @param id - The document identifier.
+     * @param metadata - Document metadata (title, tags, content type, etc.).
+     * @param body - Optional document body used for inline content types.
+     */
+    enqueueDocument(id: string, metadata: {
+        title: string;
+        topic?: string;
+        tags: string[];
+        contentType: string;
+        description?: string;
+    }, body?: string): void;
+    /**
+     * Indexes a document immediately, or delegates to the queue if available.
+     * @param id - The document identifier.
+     * @param metadata - Document metadata (title, tags, content type, etc.).
+     * @param body - Optional document body used for inline content types.
+     */
+    indexDocument(id: string, metadata: {
+        title: string;
+        topic?: string;
+        tags: string[];
+        contentType: string;
+        description?: string;
+    }, body?: string): Promise<void>;
+    /**
+     * Removes a document's vector entry and dequeues any pending embedding.
+     * @param id - The document identifier to remove.
+     */
+    removeDocument(id: string): void;
+    /**
+     * Enqueues a fact for asynchronous embedding via the EmbeddingQueue.
+     * @param key - The fact key.
+     * @param namespace - The fact namespace.
+     * @param value - The fact value to embed.
+     */
+    enqueueFact(key: string, namespace: string, value: unknown): void;
+    /**
+     * Indexes a fact immediately, or delegates to the queue if available.
+     * @param key - The fact key.
+     * @param namespace - The fact namespace.
+     * @param value - The fact value to embed.
+     */
+    indexFact(key: string, namespace: string, value: unknown): Promise<void>;
+    /**
+     * Removes a fact's vector entry and dequeues any pending embedding.
+     * @param key - The fact key.
+     * @param namespace - The fact namespace.
+     */
+    removeFact(key: string, namespace: string): void;
+    /**
+     * Removes vector entries whose corresponding fact or document no longer
+     * exists in the memory or document store.
+     */
+    pruneOrphans(): Promise<void>;
+    /**
+     * Scans for facts and documents that are missing from the vector index
+     * (or have pending retry records) and enqueues them for embedding.
+     * @returns The number of items enqueued.
+     */
+    enqueueMissing(): number;
+    /**
+     * Performs a semantic search against the vector index.
+     * @param query - Natural-language search query.
+     * @param options - Optional filters (source, namespace, tag, topic, limit, threshold).
+     * @returns The index status, an optional hint, matching results, and total match count.
+     */
+    search(query: string, options?: SearchFilterOptions): Promise<{
+        status: IndexStatus;
+        hint?: string;
+        results: SearchResult[];
+        total: number;
+    }>;
+    /**
+     * Re-embeds and rebuilds the vector index for the specified source(s).
+     * Repairs the model if needed before starting.
+     * @param source - Which entries to reindex: "all", "documents", or "facts".
+     * @returns Counts of indexed facts, documents, skipped items, and duration.
+     */
+    reindex(source?: 'all' | 'documents' | 'facts'): Promise<{
+        facts: number;
+        documents: number;
+        total: number;
+        skipped: number;
+        duration_ms: number;
+    }>;
+    /**
+     * Returns the current status of the semantic index (e.g. "ready",
+     * "empty", "model_loading", "model_unavailable", "stale_model", "partial").
+     */
+    getStatus(): IndexStatus;
+    private getTotalItemCount;
+}

package/dist/semantic-index.js

@@ -0,0 +1,427 @@
+import { INDEX_STATUS_HINTS, FACT_ID_PREFIX, DOC_ID_PREFIX, makeFactVectorId, makeDocVectorId } from './semantic-types.js';
+import { isInlineContentType } from './document-types.js';
+/**
+ * High-level semantic search index that coordinates the Embedder, VectorStore,
+ * and EmbeddingQueue to index and search facts and documents.
+ */
+export class SemanticIndex {
+    embedder;
+    vectorStore;
+    logger;
+    memoryStore = null;
+    documentStore = null;
+    embeddingQueue = null;
+    constructor(embedder, vectorStore, logger) {
+        this.embedder = embedder;
+        this.vectorStore = vectorStore;
+        this.logger = logger;
+    }
+    /** Assigns the embedding queue used for batched, asynchronous indexing. */
+    setEmbeddingQueue(queue) { this.embeddingQueue = queue; }
+    /** The identifier of the embedding model currently in use. */
+    get modelId() { return this.vectorStore.currentModelId; }
+    /** Assigns the memory store used for fact lookups during reindex/prune. */
+    setMemoryStore(store) { this.memoryStore = store; }
+    /** Assigns the document store used for document lookups during reindex/prune. */
+    setDocumentStore(store) { this.documentStore = store; }
+    /**
+     * Detects embedding dimensions by running a test embedding,
+     * then loads the vector index from disk.
+     */
+    async initialize() {
+        try {
+            const vector = await this.embedder.embedPassage('init');
+            this.vectorStore.setDimensions(vector.length);
+            this.logger.info({ dimensions: vector.length, model: this.vectorStore.currentModelId }, 'Embedding dimensions detected');
+        }
+        catch (err) {
+            this.logger.warn({ error: err instanceof Error ? err.message : String(err) }, 'Failed to detect dimensions — using default');
+        }
+        this.vectorStore.load();
+    }
+    // ==========================================================================
+    // Document Indexing
+    // ==========================================================================
+    /**
+     * Enqueues a document for asynchronous embedding via the EmbeddingQueue.
+     * @param id - The document identifier.
+     * @param metadata - Document metadata (title, tags, content type, etc.).
+     * @param body - Optional document body used for inline content types.
+     */
+    enqueueDocument(id, metadata, body) {
+        if (!this.embeddingQueue)
+            return;
+        const textToEmbed = isInlineContentType(metadata.contentType) && body
+            ? body
+            : [metadata.title, metadata.description, ...(metadata.tags || [])].filter(Boolean).join(' ');
+        const docMetadata = {
+            documentId: id, title: metadata.title,
+            topic: metadata.topic, tags: metadata.tags, contentType: metadata.contentType,
+        };
+        this.embeddingQueue.enqueue({
+            id: makeDocVectorId(id), source: 'document',
+            textToEmbed, metadata: docMetadata, enqueuedAt: Date.now(),
+        });
+    }
+    /**
+     * Indexes a document immediately, or delegates to the queue if available.
+     * @param id - The document identifier.
+     * @param metadata - Document metadata (title, tags, content type, etc.).
+     * @param body - Optional document body used for inline content types.
+     */
+    async indexDocument(id, metadata, body) {
+        if (this.embeddingQueue) {
+            this.enqueueDocument(id, metadata, body);
+            return;
+        }
+        try {
+            const textToEmbed = isInlineContentType(metadata.contentType) && body
+                ? body
+                : [metadata.title, metadata.description, ...(metadata.tags || [])].filter(Boolean).join(' ');
+            const vector = await this.embedder.embedPassage(textToEmbed);
+            const docMetadata = {
+                documentId: id, title: metadata.title,
+                topic: metadata.topic, tags: metadata.tags, contentType: metadata.contentType,
+            };
+            this.vectorStore.upsert({
+                id: makeDocVectorId(id), vector, source: 'document',
+                metadata: docMetadata, indexedAt: Date.now(),
+            });
+        }
+        catch (err) {
+            this.logger.warn({ documentId: id, error: err instanceof Error ? err.message : String(err) }, 'Failed to index document');
+        }
+    }
+    /**
+     * Removes a document's vector entry and dequeues any pending embedding.
+     * @param id - The document identifier to remove.
+     */
+    removeDocument(id) {
+        const vectorId = makeDocVectorId(id);
+        if (this.embeddingQueue)
+            this.embeddingQueue.dequeue(vectorId);
+        const removed = this.vectorStore.remove(vectorId);
+        if (removed) {
+            this.vectorStore.save().catch((err) => {
+                this.logger.warn({ error: err instanceof Error ? err.message : String(err) }, 'Failed to save after document removal');
+            });
+        }
+    }
+    // ==========================================================================
+    // Fact Indexing
+    // ==========================================================================
+    /**
+     * Enqueues a fact for asynchronous embedding via the EmbeddingQueue.
+     * @param key - The fact key.
+     * @param namespace - The fact namespace.
+     * @param value - The fact value to embed.
+     */
+    enqueueFact(key, namespace, value) {
+        if (!this.embeddingQueue)
+            return;
+        const valueStr = typeof value === 'string' ? value : JSON.stringify(value);
+        const textToEmbed = `${namespace}: ${key} — ${valueStr}`;
+        const preview = valueStr.length > 200 ? valueStr.slice(0, 200) : valueStr;
+        const factMetadata = { key, namespace, preview };
+        this.embeddingQueue.enqueue({
+            id: makeFactVectorId(namespace, key), source: 'fact',
+            textToEmbed, metadata: factMetadata, enqueuedAt: Date.now(),
+        });
+    }
+    /**
+     * Indexes a fact immediately, or delegates to the queue if available.
+     * @param key - The fact key.
+     * @param namespace - The fact namespace.
+     * @param value - The fact value to embed.
+     */
+    async indexFact(key, namespace, value) {
+        if (this.embeddingQueue) {
+            this.enqueueFact(key, namespace, value);
+            return;
+        }
+        try {
+            const valueStr = typeof value === 'string' ? value : JSON.stringify(value);
+            const textToEmbed = `${namespace}: ${key} — ${valueStr}`;
+            const vector = await this.embedder.embedPassage(textToEmbed);
+            const preview = valueStr.length > 200 ? valueStr.slice(0, 200) : valueStr;
+            this.vectorStore.upsert({
+                id: makeFactVectorId(namespace, key), vector, source: 'fact',
+                metadata: { key, namespace, preview }, indexedAt: Date.now(),
+            });
+        }
+        catch (err) {
+            this.logger.warn({ key, namespace, error: err instanceof Error ? err.message : String(err) }, 'Failed to index fact');
+        }
+    }
+    /**
+     * Removes a fact's vector entry and dequeues any pending embedding.
+     * @param key - The fact key.
+     * @param namespace - The fact namespace.
+     */
+    removeFact(key, namespace) {
+        const vectorId = makeFactVectorId(namespace, key);
+        if (this.embeddingQueue)
+            this.embeddingQueue.dequeue(vectorId);
+        const removed = this.vectorStore.remove(vectorId);
+        if (removed) {
+            this.vectorStore.save().catch((err) => {
+                this.logger.warn({ error: err instanceof Error ? err.message : String(err) }, 'Failed to save after fact removal');
+            });
+        }
+    }
+    // ==========================================================================
+    // Orphan Cleanup
+    // ==========================================================================
+    /**
+     * Removes vector entries whose corresponding fact or document no longer
+     * exists in the memory or document store.
+     */
+    async pruneOrphans() {
+        const entries = this.vectorStore.allEntries();
+        const orphanIds = [];
+        for (const entry of entries) {
+            if (entry.id.startsWith(FACT_ID_PREFIX)) {
+                const rest = entry.id.slice(FACT_ID_PREFIX.length);
+                const sepIdx = rest.indexOf('\0');
+                if (sepIdx === -1) {
+                    orphanIds.push(entry.id);
+                    continue;
+                }
+                const namespace = rest.slice(0, sepIdx);
+                const key = rest.slice(sepIdx + 1);
+                if (this.memoryStore && !this.memoryStore.read(key, namespace)) {
+                    orphanIds.push(entry.id);
+                }
+            }
+            else if (entry.id.startsWith(DOC_ID_PREFIX)) {
+                const docId = entry.id.slice(DOC_ID_PREFIX.length);
+                if (this.documentStore) {
+                    if (!this.documentStore.getIndex().documents.some((d) => d.id === docId)) {
+                        orphanIds.push(entry.id);
+                    }
+                }
+            }
+        }
+        if (orphanIds.length > 0) {
+            for (const id of orphanIds)
+                this.vectorStore.remove(id);
+            await this.vectorStore.save();
+            this.logger.info({ pruned: orphanIds.length }, 'Pruned orphaned vector entries');
+        }
+    }
+    // ==========================================================================
+    // Startup Recovery
+    // ==========================================================================
+    /**
+     * Scans for facts and documents that are missing from the vector index
+     * (or have pending retry records) and enqueues them for embedding.
+     * @returns The number of items enqueued.
+     */
+    enqueueMissing() {
+        if (!this.embeddingQueue)
+            return 0;
+        let enqueued = 0;
+        const existingIds = new Set(this.vectorStore.allEntries().map((e) => e.id));
+        const failures = this.vectorStore.getFailedEmbeddings();
+        for (const [id, record] of Object.entries(failures)) {
+            if (record.status !== 'pending')
+                continue;
+            if (id.startsWith(FACT_ID_PREFIX) && this.memoryStore) {
+                const rest = id.slice(FACT_ID_PREFIX.length);
+                const sepIdx = rest.indexOf('\0');
+                if (sepIdx === -1)
+                    continue;
+                const namespace = rest.slice(0, sepIdx);
+                const key = rest.slice(sepIdx + 1);
+                const fact = this.memoryStore.read(key, namespace);
+                if (fact) {
+                    this.enqueueFact(key, namespace, fact.value);
+                    enqueued++;
+                }
+            }
+            else if (id.startsWith(DOC_ID_PREFIX) && this.documentStore) {
+                const docId = id.slice(DOC_ID_PREFIX.length);
+                const docMeta = this.documentStore.getIndex().documents.find((d) => d.id === docId);
+                if (docMeta) {
+                    const fullDoc = this.documentStore.read({ id: docId, include_body: true });
+                    this.enqueueDocument(docId, {
+                        title: docMeta.title, topic: docMeta.topic,
+                        tags: docMeta.tags ?? [], contentType: docMeta.content_type,
+                        description: docMeta.description,
+                    }, fullDoc.body);
+                    enqueued++;
+                }
+            }
+        }
+        if (this.memoryStore) {
+            const factsList = this.memoryStore.list({
+                limit: this.memoryStore.maxEntries, includeValues: true, includeStats: false,
+            });
+            for (const fact of factsList.facts) {
+                const key = fact.key;
+                const namespace = fact.namespace;
+                if (!existingIds.has(makeFactVectorId(namespace, key))) {
+                    this.enqueueFact(key, namespace, fact.value);
+                    enqueued++;
+                }
+            }
+        }
+        if (this.documentStore) {
+            for (const docMeta of this.documentStore.getIndex().documents) {
+                if (!existingIds.has(makeDocVectorId(docMeta.id))) {
+                    const fullDoc = this.documentStore.read({ id: docMeta.id, include_body: true });
+                    this.enqueueDocument(docMeta.id, {
+                        title: docMeta.title, topic: docMeta.topic,
+                        tags: docMeta.tags ?? [], contentType: docMeta.content_type,
+                        description: docMeta.description,
+                    }, fullDoc.body);
+                    enqueued++;
+                }
+            }
+        }
+        if (enqueued > 0)
+            this.logger.info({ enqueued }, 'Enqueued missing embeddings for recovery');
+        return enqueued;
+    }
+    // ==========================================================================
+    // Search
+    // ==========================================================================
+    /**
+     * Performs a semantic search against the vector index.
+     * @param query - Natural-language search query.
+     * @param options - Optional filters (source, namespace, tag, topic, limit, threshold).
+     * @returns The index status, an optional hint, matching results, and total match count.
+     */
+    async search(query, options) {
+        const status = this.getStatus();
+        const hint = INDEX_STATUS_HINTS[status];
+        if (status === 'model_unavailable' || status === 'model_loading') {
+            const reason = this.embedder.unavailableReason;
+            return { status, hint: reason ? `${hint} Reason: ${reason}` : hint, results: [], total: 0 };
+        }
+        if (status === 'empty')
+            return { status, hint, results: [], total: 0 };
+        try {
+            const queryVector = await this.embedder.embedQuery(query);
+            const allResults = this.vectorStore.query(queryVector, { ...options, limit: Number.MAX_SAFE_INTEGER });
+            const total = allResults.length;
+            const limit = options?.limit ?? 10;
+            return { status, hint, results: allResults.slice(0, limit), total };
+        }
+        catch (err) {
+            const errorMsg = err instanceof Error ? err.message : String(err);
+            this.logger.warn({ query, error: errorMsg }, 'Semantic search failed');
+            return { status: 'model_unavailable', hint: `${INDEX_STATUS_HINTS.model_unavailable} Reason: ${errorMsg}`, results: [], total: 0 };
+        }
+    }
+    // ==========================================================================
+    // Reindex
+    // ==========================================================================
+    /**
+     * Re-embeds and rebuilds the vector index for the specified source(s).
+     * Repairs the model if needed before starting.
+     * @param source - Which entries to reindex: "all", "documents", or "facts".
+     * @returns Counts of indexed facts, documents, skipped items, and duration.
+     */
+    async reindex(source = 'all') {
+        await this.embedder.repairAndLoad();
+        const start = Date.now();
+        let factsIndexed = 0, docsIndexed = 0, skipped = 0;
+        const newEntries = [];
+        if (source !== 'documents' && this.memoryStore) {
+            const factsList = this.memoryStore.list({
+                limit: this.memoryStore.maxEntries, includeValues: true, includeStats: false,
+            });
+            for (const fact of factsList.facts) {
+                try {
+                    const key = fact.key;
+                    const namespace = fact.namespace;
+                    const valueStr = typeof fact.value === 'string' ? fact.value : JSON.stringify(fact.value);
+                    const vector = await this.embedder.embedPassage(`${namespace}: ${key} — ${valueStr}`);
+                    const preview = valueStr.length > 200 ? valueStr.slice(0, 200) : valueStr;
+                    newEntries.push({
+                        id: makeFactVectorId(namespace, key), vector, source: 'fact',
+                        metadata: { key, namespace, preview }, indexedAt: Date.now(),
+                    });
+                    factsIndexed++;
+                }
+                catch {
+                    skipped++;
+                }
+            }
+        }
+        if (source !== 'facts' && this.documentStore) {
+            for (const docRecord of this.documentStore.list({}).documents) {
+                try {
+                    const id = docRecord.id;
+                    const title = docRecord.title;
+                    const contentType = docRecord.content_type;
+                    const tags = docRecord.tags ?? [];
+                    const topic = docRecord.topic;
+                    const description = docRecord.description;
+                    let textToEmbed;
+                    if (isInlineContentType(contentType)) {
+                        const fullDoc = this.documentStore.read({ id, include_body: true });
+                        textToEmbed = fullDoc.body || [title, description, ...tags].filter(Boolean).join(' ');
+                    }
+                    else {
+                        textToEmbed = [title, description, ...tags].filter(Boolean).join(' ');
+                    }
+                    const vector = await this.embedder.embedPassage(textToEmbed);
+                    newEntries.push({
+                        id: makeDocVectorId(id), vector, source: 'document',
+                        metadata: { documentId: id, title, topic, tags, contentType },
+                        indexedAt: Date.now(),
+                    });
+                    docsIndexed++;
+                }
+                catch {
+                    skipped++;
+                }
+            }
+        }
+        if (source === 'all') {
+            this.vectorStore.rebuild(newEntries);
+            this.vectorStore.setFailedEmbeddings({});
+        }
+        else {
+            for (const entry of newEntries)
+                this.vectorStore.upsert(entry);
+        }
+        await this.vectorStore.save();
+        const duration_ms = Date.now() - start;
+        this.logger.info({ factsIndexed, docsIndexed, skipped, duration_ms }, 'Reindex completed');
+        return { facts: factsIndexed, documents: docsIndexed, total: factsIndexed + docsIndexed, skipped, duration_ms };
+    }
+    // ==========================================================================
+    // Status
+    // ==========================================================================
+    /**
+     * Returns the current status of the semantic index (e.g. "ready",
+     * "empty", "model_loading", "model_unavailable", "stale_model", "partial").
+     */
+    getStatus() {
+        if (this.embedder.isUnavailable)
+            return 'model_unavailable';
+        if (this.embedder.isLoading)
+            return 'model_loading';
+        if (this.vectorStore.entryCount === 0)
+            return 'empty';
+        const indexModel = this.vectorStore.indexModelId;
+        if (indexModel && indexModel !== this.vectorStore.currentModelId)
+            return 'stale_model';
+        const totalItems = this.getTotalItemCount();
+        if (totalItems > 0 && this.vectorStore.entryCount < totalItems)
+            return 'partial';
+        return 'ready';
+    }
+    getTotalItemCount() {
+        let total = 0;
+        if (this.memoryStore)
+            total += this.memoryStore.size;
+        if (this.documentStore)
+            total += this.documentStore.getIndex().documents.length;
+        return total;
+    }
+}
+//# sourceMappingURL=semantic-index.js.map

package/dist/semantic-index.js.map

@@ -0,0 +1 @@
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package/dist/semantic-tools.d.ts

@@ -0,0 +1,10 @@
+import type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import type { Logger } from 'pino';
+import type { SemanticIndex } from './semantic-index.js';
+/**
+ * Registers semantic_search and semantic_reindex tools on the MCP server.
+ * @param server - The MCP server instance to register tools on.
+ * @param semanticIndex - The semantic index used for embedding-based search and reindexing.
+ * @param _logger - Logger instance (reserved for future use).
+ */
+export declare function registerSemanticTools(server: McpServer, semanticIndex: SemanticIndex, _logger: Logger): void;