memonaut 0.3.0 → 0.4.0

package/dist/cli-main.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cli-main.d.ts","sourceRoot":"","sources":["../src/cli-main.ts"],"names":[],"mappings":"AAwPA;;;;;;;;;GASG;AACH,wBAAgB,eAAe,CAC9B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC9B,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,GAAG,SAAS,GACzB,MAAM,GAAG,IAAI,CAqBf;AAueD,uEAAuE;AACvE,wBAAsB,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC,CAMzC"}

package/dist/cli-main.js

@@ -5,7 +5,7 @@ import { parseArgs } from 'node:util';
 import { loadConfig, writeStarterConfig } from './config.js';
 import { getMeta, openDb } from './db.js';
 import { colorsEnabled, makeStyle, renderHit, renderTable, relativeTime, tildify, } from './format.js';
-import { index } from './indexer.js';
+import { freshness, index } from './indexer.js';
 import { TIERS } from './model.js';
 import { readRawEntry } from './pi-source.js';
 import { DEFAULT_MAX_MATCHES, DEFAULT_MAX_PER_FILE, regexSearch, } from './regex.js';
@@ -21,8 +21,10 @@ COMMANDS
   search <query...>      Search transcripts, grouped by fork lineage
   search --regex <pat>   Exact regex search over the original transcripts
   show <ref>             Print a thread (file id, session uuid prefix, name or path)
+                         (show and sql sync first too; --no-sync skips it)
   sql <query>            Run a read-only SQL query against the index
   stats                  Summarise what is indexed
+  status                 How fresh the index is, and how much is pending
   config                 Show config paths, or write a starter config
   skills [install]       List or install the agent skill (into ~/.agents/skills)
 
@@ -137,14 +139,25 @@ function withTier(config, tier) {
         fail(`unknown tier "${tier}" (expected ${TIERS.join(', ')})`);
     return { ...config, tier: tier };
 }
-/** Cheap incremental catch-up so a query is never answered from a stale index. */
+/**
+ * Cheap incremental catch-up so a query is never answered from a stale index.
+ *
+ * A missing index builds itself here rather than failing. Telling somebody who
+ * just typed a search to go and type a different command first is a worse
+ * answer than taking ~35 s once and saying so.
+ */
 function sync(config, quiet) {
-    if (!fs.existsSync(config.dbPath)) {
-        fail(`no index at ${tildify(config.dbPath)}. Run \`recall index\` first.`);
+    // "Cold" is about whether a build has ever FINISHED, not whether a file is
+    // there: an interrupted first build leaves a file behind, and judging by
+    // existence alone would swallow the banner and hand the user a silent
+    // 35-second hang the second time too.
+    const cold = lastIndexedAt(config) === null;
+    if (cold && !quiet) {
+        process.stderr.write(`recall: no index at ${tildify(config.dbPath)} yet, building it once (well under a minute)…\n`);
     }
     const stats = index({ config, onProgress: () => { } });
     if (!quiet && stats.filesIndexed > 0) {
-        process.stderr.write(`recall: synced ${stats.filesIndexed} transcript(s) in ${stats.durationMs}ms\n`);
+        process.stderr.write(`recall: ${cold ? 'indexed' : 'synced'} ${stats.filesIndexed} transcript(s) in ${stats.durationMs}ms\n`);
     }
 }
 function cmdIndex(argv) {
@@ -363,6 +376,7 @@ function cmdShow(argv) {
             limit: { type: 'string', default: '40' },
             full: { type: 'boolean', default: false },
             json: { type: 'boolean', default: false },
+            'no-sync': { type: 'boolean', default: false },
         },
         allowPositionals: true,
     });
@@ -370,6 +384,11 @@ function cmdShow(argv) {
     if (!ref)
         fail('which thread? Pass a file id, a session uuid prefix, a name, or a path');
     const config = loadConfig();
+    // A thread can have grown since the search that found it, so this syncs too:
+    // "every query syncs before it answers" has to be true of all of them, or the
+    // sentence is not worth writing down.
+    if (!values['no-sync'])
+        sync(config, Boolean(values.json));
     const db = openDb(config.dbPath, { readOnly: true });
     const thread = resolveThread(db, ref);
     if (!thread)
@@ -421,6 +440,7 @@ function cmdSql(argv) {
         options: {
             json: { type: 'boolean', default: false },
             limit: { type: 'string', default: '200' },
+            'no-sync': { type: 'boolean', default: false },
         },
         allowPositionals: true,
     });
@@ -428,6 +448,8 @@ function cmdSql(argv) {
     if (!sql)
         fail('no SQL given');
     const config = loadConfig();
+    if (!values['no-sync'])
+        sync(config, Boolean(values.json));
     const db = openDb(config.dbPath, { readOnly: true });
     let rows;
     try {
@@ -484,6 +506,73 @@ function cmdStats(argv) {
     ].join('\n') + '\n');
     db.close();
 }
+/** Epoch ms of the last COMPLETED catch-up, or null if one never finished. */
+function lastIndexedAt(config) {
+    if (!fs.existsSync(config.dbPath))
+        return null;
+    try {
+        const db = openDb(config.dbPath, { readOnly: true });
+        try {
+            const value = Number(getMeta(db, 'indexed_at') ?? NaN);
+            return Number.isFinite(value) ? value : null;
+        }
+        finally {
+            db.close();
+        }
+    }
+    catch {
+        return null;
+    }
+}
+/**
+ * `recall status`: how far behind the index is, without touching it.
+ *
+ * Every read path syncs before it answers, so this is not what keeps results
+ * correct. It exists so a human (or a scheduler asking whether it is earning
+ * its keep) can see the lag, and tell "nothing to do" apart from "the next
+ * query pays for a month of catch-up".
+ */
+function cmdStatus(argv) {
+    const { values } = parseArgs({
+        args: argv,
+        options: { json: { type: 'boolean', default: false } },
+        allowPositionals: false,
+    });
+    const config = loadConfig();
+    const report = freshness(config);
+    const pending = report.changed + report.unseen + report.vanished;
+    if (values.json) {
+        process.stdout.write(JSON.stringify({
+            ...report,
+            pending,
+            indexedAt: report.indexedAt
+                ? new Date(report.indexedAt).toISOString()
+                : null,
+        }, null, 2) + '\n');
+        return;
+    }
+    const style = makeStyle(colorsEnabled());
+    if (!report.exists) {
+        process.stdout.write([
+            `${style.bold('no index yet')} at ${tildify(report.dbPath)}`,
+            `${report.transcriptsOnDisk} transcript(s) on disk waiting to be indexed`,
+            style.dim('Run `recall index`, or just search: any query builds it.'),
+        ].join('\n') + '\n');
+        return;
+    }
+    const verdict = pending === 0
+        ? style.bold('up to date')
+        : style.bold(`${pending} transcript(s) pending`);
+    process.stdout.write([
+        `${verdict} · last indexed ${relativeTime(report.indexedAt ? new Date(report.indexedAt).toISOString() : null)}`,
+        `${report.transcriptsIndexed} indexed · ${report.changed} changed · ${report.unseen} never seen · ${report.vanished} gone · ${report.transcriptsOnDisk} on disk`,
+        `tier ${report.tier ?? '?'} · db ${(report.dbBytes / 1e6).toFixed(1)} MB`,
+        style.dim(tildify(report.dbPath)),
+        style.dim(pending === 0
+            ? 'Every search syncs first, so this is informational.'
+            : `Every search syncs first, so those ${pending} will be folded in by the next query.`),
+    ].join('\n') + '\n');
+}
 function cmdConfig(argv) {
     const { values } = parseArgs({
         args: argv,
@@ -558,6 +647,8 @@ async function main() {
             return cmdSql(rest);
         case 'stats':
             return cmdStats(rest);
+        case 'status':
+            return cmdStatus(rest);
         case 'config':
             return cmdConfig(rest);
         case 'skills':

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package/dist/db.d.ts

@@ -11,6 +11,15 @@ export interface OpenOptions {
     readOnly?: boolean;
     /** Throw instead of rebuilding when the schema version differs. */
     noRebuild?: boolean;
+    /**
+     * Leave `query_only` off on a read-only connection, so TEMP objects can be
+     * created. The index file itself is still unwritable, because that comes
+     * from opening it read-only, not from the pragma.
+     *
+     * This exists for one caller: the SQL tool shadows the real tables with temp
+     * views so arbitrary queries cannot reach private transcripts.
+     */
+    writableTemp?: boolean;
 }
 export declare function getMeta(db: DB, key: string): string | undefined;
 export declare function setMeta(db: DB, key: string, value: string): void;

package/dist/db.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"db.d.ts","sourceRoot":"","sources":["../src/db.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,YAAY,EAAC,MAAM,aAAa,CAAC;AAEzC;;;;;GAKG;AACH,eAAO,MAAM,cAAc,IAAI,CAAC;AAEhC,MAAM,MAAM,EAAE,GAAG,YAAY,CAAC;AA6F9B,MAAM,WAAW,WAAW;IAC3B,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,mEAAmE;IACnE,SAAS,CAAC,EAAE,OAAO,CAAC;CACpB;AAED,wBAAgB,OAAO,CAAC,EAAE,EAAE,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAI/D;AAED,wBAAgB,OAAO,CAAC,EAAE,EAAE,EAAE,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,IAAI,CAIhE;AAED;;;;;GAKG;AACH,wBAAgB,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,GAAE,WAAgB,GAAG,EAAE,CAqCjE;AAED,wBAAgB,OAAO,CAAC,EAAE,EAAE,EAAE,GAAG,IAAI,CAYpC;AAED;;;;;;;;GAQG;AACH,wBAAgB,YAAY,CAAC,EAAE,EAAE,EAAE,EAAE,SAAS,EAAE,MAAM,GAAG,IAAI,CAW5D;AAED,2EAA2E;AAC3E,wBAAgB,UAAU,CAAC,EAAE,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAOvD"}
+{"version":3,"file":"db.d.ts","sourceRoot":"","sources":["../src/db.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,YAAY,EAAC,MAAM,aAAa,CAAC;AAEzC;;;;;GAKG;AACH,eAAO,MAAM,cAAc,IAAI,CAAC;AAEhC,MAAM,MAAM,EAAE,GAAG,YAAY,CAAC;AA0G9B,MAAM,WAAW,WAAW;IAC3B,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,mEAAmE;IACnE,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB;;;;;;;OAOG;IACH,YAAY,CAAC,EAAE,OAAO,CAAC;CACvB;AAED,wBAAgB,OAAO,CAAC,EAAE,EAAE,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAI/D;AAED,wBAAgB,OAAO,CAAC,EAAE,EAAE,EAAE,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,IAAI,CAIhE;AAED;;;;;GAKG;AACH,wBAAgB,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,GAAE,WAAgB,GAAG,EAAE,CAyCjE;AAED,wBAAgB,OAAO,CAAC,EAAE,EAAE,EAAE,GAAG,IAAI,CAYpC;AAED;;;;;;;;GAQG;AACH,wBAAgB,YAAY,CAAC,EAAE,EAAE,EAAE,EAAE,SAAS,EAAE,MAAM,GAAG,IAAI,CAW5D;AAED,2EAA2E;AAC3E,wBAAgB,UAAU,CAAC,EAAE,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAOvD"}

package/dist/db.js

@@ -8,6 +8,18 @@ import { DatabaseSync } from 'node:sqlite';
  * carrying migration code forever.
  */
 export const SCHEMA_VERSION = 1;
+/**
+ * How long a connection waits for a writer to finish before giving up.
+ *
+ * Several processes share this index by design: the human's CLI, a pi
+ * extension flushing on shutdown, and any number of concurrent agents, each of
+ * which syncs before it queries. Without a busy timeout SQLite returns
+ * SQLITE_BUSY on the FIRST contended write, which surfaces to an agent as a
+ * failed recall. A warm catch-up takes ~120 ms and a cold build ~35 s, so 5 s
+ * covers every realistic overlap except a first-ever build, which is exactly
+ * the case where failing fast and reporting it is the honest answer.
+ */
+const BUSY_TIMEOUT_MS = 5_000;
 const SCHEMA = `
 CREATE TABLE IF NOT EXISTS meta(
   key TEXT PRIMARY KEY,
@@ -117,12 +129,17 @@ export function openDb(dbPath, opts = {}) {
             throw new Error(`no index at ${dbPath}. Run \`recall index\` first.`);
         }
         const db = new DatabaseSync(dbPath, { readOnly: true });
-        db.exec('PRAGMA query_only = 1');
+        if (!opts.writableTemp)
+            db.exec('PRAGMA query_only = 1');
+        // Readers do not block on writers under WAL, but they do contend with
+        // checkpointing, so the timeout matters here too.
+        db.exec(`PRAGMA busy_timeout = ${BUSY_TIMEOUT_MS}`);
         return db;
     }
     fs.mkdirSync(path.dirname(dbPath), { recursive: true });
     const fresh = !fs.existsSync(dbPath);
     const db = new DatabaseSync(dbPath);
+    db.exec(`PRAGMA busy_timeout = ${BUSY_TIMEOUT_MS}`);
     db.exec('PRAGMA journal_mode = WAL');
     db.exec('PRAGMA synchronous = NORMAL');
     db.exec('PRAGMA foreign_keys = OFF');

package/dist/db.js.map

@@ -1 +1 @@
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package/dist/indexer.d.ts

@@ -6,6 +6,21 @@ export interface IndexOptions {
     full?: boolean;
     db?: DB;
     onProgress?: (progress: IndexProgress) => void;
+    /**
+     * Stop ingesting once this many ms have passed, leaving the rest for the
+     * next run. Checked BETWEEN lineages, never inside one, so the per-lineage
+     * transaction and the watermark-written-last rule both still hold.
+     *
+     * For callers that must not hang: a session shutting down after a long gap
+     * could otherwise sit through a multi-second catch-up on the way out.
+     *
+     * It bounds the INGEST LOOP, not the whole run: the scan and the identity
+     * pass ahead of it are ~120 ms on a 4,831-file corpus and always run. A full
+     * rebuild is refused outright rather than truncated, see below.
+     */
+    budgetMs?: number;
+    /** Clock seam, so the budget can be tested without racing a real one. */
+    now?: () => number;
 }
 export interface IndexProgress {
     phase: 'scan' | 'ingest';
@@ -29,6 +44,8 @@ export interface IndexStats {
     bytesRead: number;
     durationMs: number;
     fullRebuild: boolean;
+    /** True when `budgetMs` cut the run short and work is still outstanding. */
+    budgetExhausted: boolean;
 }
 export declare function index(opts: IndexOptions): IndexStats;
 /** Absolute path of the index for a config, for messages and tooling. */
@@ -38,6 +55,17 @@ export interface SyncResult {
     ran: boolean;
     stats?: IndexStats;
 }
+/**
+ * There is no index yet, as opposed to there being one that could not be read.
+ *
+ * The distinction is the whole point of the type. "No index" is fixed by
+ * building one; "index is locked" or "index is corrupt" is not, and a caller
+ * that collapses the two tells the user to run a command that will not help.
+ */
+export declare class MissingIndexError extends Error {
+    readonly dbPath: string;
+    constructor(dbPath: string);
+}
 /**
  * Catch the index up, unless it was already synced within `ttlMs`.
  *
@@ -46,5 +74,42 @@ export interface SyncResult {
  * turn. The TTL is what makes "always fresh" affordable for callers that query
  * in a burst.
  */
-export declare function syncIfStale(config: Config, ttlMs?: number): SyncResult;
+export declare function syncIfStale(config: Config, ttlMs?: number, budgetMs?: number): SyncResult;
+export interface Freshness {
+    dbPath: string;
+    exists: boolean;
+    dbBytes: number;
+    tier: string | null;
+    /** When the last catch-up finished, epoch ms. */
+    indexedAt: number | null;
+    ageMs: number | null;
+    /** Transcripts on disk, before ignore rules. */
+    transcriptsOnDisk: number;
+    /** Transcripts the index knows about. */
+    transcriptsIndexed: number;
+    /** Known transcripts that have grown or changed since their watermark. */
+    changed: number;
+    /**
+     * Transcripts whose CONTENT is not in the index: never discovered, or
+     * discovered but not yet ingested (a run cut short by its time budget
+     * registers the file before reading it). Ignore rules applied.
+     */
+    unseen: number;
+    /** Indexed transcripts no longer on disk, which the next sync will delete. */
+    vanished: number;
+    sources: string[];
+}
+/**
+ * How far behind the index is, without changing it.
+ *
+ * This is a `stat` pass over the corpus plus a header read for the few files
+ * the index has never seen, because whether a new file is ignored can only be
+ * decided from its header `cwd`, never from its mangled directory name.
+ * Measured at ~70 ms over 4,831 transcripts.
+ *
+ * Every read path already syncs before it answers, so this is not how anything
+ * stays correct: it is how a human or an agent can SEE the lag, and how they
+ * can tell "nothing to do" apart from "about to pay for a month of catch-up".
+ */
+export declare function freshness(config: Config): Freshness;
 //# sourceMappingURL=indexer.d.ts.map

package/dist/indexer.d.ts.map

@@ -1 +1 @@
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package/dist/indexer.js

@@ -12,7 +12,8 @@ function probe(file) {
     return { header: readHeader(file), headHash: headFingerprint(file) };
 }
 export function index(opts) {
-    const started = Date.now();
+    const clock = opts.now ?? Date.now;
+    const started = clock();
     const { config } = opts;
     const db = opts.db ?? openDb(config.dbPath);
     const report = opts.onProgress ?? (() => { });
@@ -32,6 +33,7 @@ export function index(opts) {
         bytesRead: 0,
         durationMs: 0,
         fullRebuild: false,
+        budgetExhausted: false,
     };
     // A tier change alters what text exists at all, so it forces a rebuild.
     const storedTier = getMeta(db, 'tier');
@@ -39,6 +41,18 @@ export function index(opts) {
     if (storedTier !== undefined && storedTier !== config.tier)
         full = true;
     stats.fullRebuild = full;
+    // A rebuild is all-or-nothing: it DELETEs every chunk, entry and membership
+    // before reading a byte, so truncating one would leave an index that later
+    // queries would answer from as though it were complete. A budget means the
+    // caller cannot afford to finish, so the honest move is not to start.
+    // Reachable without `opts.full`: a tier change forces one (line above).
+    if (full && opts.budgetMs !== undefined) {
+        stats.budgetExhausted = true;
+        stats.durationMs = clock() - started;
+        if (!opts.db)
+            db.close();
+        return stats;
+    }
     const isIgnored = matcher(config.ignore);
     const isPrivate = matcher(config.private);
     // Everything already known, loaded up front. This is what lets a warm run
@@ -293,6 +307,12 @@ export function index(opts) {
     };
     let done = 0;
     for (const unit of work) {
+        // `>=` so that a budget of 0 means "do nothing", even on a machine fast
+        // enough to reach this in the same millisecond it started.
+        if (opts.budgetMs !== undefined && clock() - started >= opts.budgetMs) {
+            stats.budgetExhausted = true;
+            break;
+        }
         db.exec('BEGIN');
         try {
             const lineageId = idOf.get(unit.lineageRoot);
@@ -368,9 +388,13 @@ export function index(opts) {
         });
     }
     setMeta(db, 'tier', config.tier);
-    setMeta(db, 'indexed_at', String(Date.now()));
+    // Only claim to be caught up when we actually are. `indexed_at` is what the
+    // sync TTL reads, so advancing it after a budget-truncated run would let the
+    // next query skip the catch-up and answer from an index we KNOW is behind.
+    if (!stats.budgetExhausted)
+        setMeta(db, 'indexed_at', String(Date.now()));
     setMeta(db, 'roots', JSON.stringify(config.sources.map((s) => s.root)));
-    stats.durationMs = Date.now() - started;
+    stats.durationMs = clock() - started;
     if (!opts.db)
         db.close();
     return stats;
@@ -379,6 +403,21 @@ export function index(opts) {
 export function describeIndex(config) {
     return path.resolve(config.dbPath);
 }
+/**
+ * There is no index yet, as opposed to there being one that could not be read.
+ *
+ * The distinction is the whole point of the type. "No index" is fixed by
+ * building one; "index is locked" or "index is corrupt" is not, and a caller
+ * that collapses the two tells the user to run a command that will not help.
+ */
+export class MissingIndexError extends Error {
+    dbPath;
+    constructor(dbPath) {
+        super(`no index at ${dbPath}`);
+        this.name = 'MissingIndexError';
+        this.dbPath = dbPath;
+    }
+}
 /**
  * Catch the index up, unless it was already synced within `ttlMs`.
  *
@@ -387,18 +426,111 @@ export function describeIndex(config) {
  * turn. The TTL is what makes "always fresh" affordable for callers that query
  * in a burst.
  */
-export function syncIfStale(config, ttlMs = 15_000) {
+export function syncIfStale(config, ttlMs = 15_000, budgetMs) {
     if (!fs.existsSync(config.dbPath))
-        throw new Error(`no index at ${config.dbPath}`);
+        throw new MissingIndexError(config.dbPath);
     const db = openDb(config.dbPath);
     try {
         const last = Number(getMeta(db, 'indexed_at') ?? 0);
         if (Number.isFinite(last) && Date.now() - last < ttlMs)
             return { ran: false };
-        return { ran: true, stats: index({ config, db }) };
+        return { ran: true, stats: index({ config, db, budgetMs }) };
     }
     finally {
         db.close();
     }
 }
+/**
+ * How far behind the index is, without changing it.
+ *
+ * This is a `stat` pass over the corpus plus a header read for the few files
+ * the index has never seen, because whether a new file is ignored can only be
+ * decided from its header `cwd`, never from its mangled directory name.
+ * Measured at ~70 ms over 4,831 transcripts.
+ *
+ * Every read path already syncs before it answers, so this is not how anything
+ * stays correct: it is how a human or an agent can SEE the lag, and how they
+ * can tell "nothing to do" apart from "about to pay for a month of catch-up".
+ */
+export function freshness(config) {
+    const report = {
+        dbPath: config.dbPath,
+        exists: fs.existsSync(config.dbPath),
+        dbBytes: 0,
+        tier: null,
+        indexedAt: null,
+        ageMs: null,
+        transcriptsOnDisk: 0,
+        transcriptsIndexed: 0,
+        changed: 0,
+        unseen: 0,
+        vanished: 0,
+        sources: config.sources.map((s) => s.root),
+    };
+    // Null size/mtime means "row exists, content never ingested", which is a
+    // different thing from "ingested and since changed", so the nulls are kept.
+    const known = new Map();
+    if (report.exists) {
+        report.dbBytes = fs.statSync(config.dbPath).size;
+        const db = openDb(config.dbPath, { readOnly: true });
+        try {
+            report.tier = getMeta(db, 'tier') ?? null;
+            const at = Number(getMeta(db, 'indexed_at') ?? NaN);
+            if (Number.isFinite(at)) {
+                report.indexedAt = at;
+                report.ageMs = Date.now() - at;
+            }
+            for (const row of db
+                .prepare('SELECT path, size, mtime FROM file')
+                .all()) {
+                known.set(row.path, {
+                    size: row.size === null ? null : num(row.size),
+                    mtime: row.mtime === null ? null : num(row.mtime),
+                });
+            }
+        }
+        finally {
+            db.close();
+        }
+    }
+    report.transcriptsIndexed = known.size;
+    const isIgnored = matcher(config.ignore);
+    // Tracked so a deletion counts as pending work too: reporting "up to date"
+    // while the next sync still has N `deleteFile` calls to make would undercut
+    // the only thing this command is for.
+    const seen = new Set();
+    for (const source of config.sources) {
+        if (!fs.existsSync(source.root))
+            continue;
+        for (const file of listTranscripts(source.root)) {
+            report.transcriptsOnDisk++;
+            let st;
+            try {
+                st = fs.statSync(file);
+            }
+            catch {
+                continue;
+            }
+            seen.add(file);
+            const row = known.get(file);
+            if (!row) {
+                // Only a file the index has never heard of has to be opened, and only
+                // because the ignore rules match the header cwd, never the mangled
+                // directory name.
+                const header = readHeader(file);
+                if (header && !isIgnored(header.cwd ?? file))
+                    report.unseen++;
+                continue;
+            }
+            if (row.size === null || row.mtime === null)
+                report.unseen++;
+            else if (row.size !== st.size || row.mtime !== Math.floor(st.mtimeMs))
+                report.changed++;
+        }
+    }
+    for (const knownPath of known.keys())
+        if (!seen.has(knownPath))
+            report.vanished++;
+    return report;
+}
 //# sourceMappingURL=indexer.js.map

package/dist/indexer.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "memonaut",
-  "version": "0.3.0",
+  "version": "0.4.0",
   "description": "Index and search AI agent conversation transcripts (pi sessions and friends) from the CLI, from agents, and from your own code",
   "license": "AGPL-3.0-only",
   "repository": {

package/skills/memonaut/SKILL.md

@@ -107,11 +107,13 @@ recall show 2585 --from 120
 recall sql "select project, count(*) n from file group by 1 order by n desc limit 10"
 ```
 
-Add `--json` for machine-readable output. If it reports no index, the user needs to run `recall index` once.
+Add `--json` for machine-readable output. `recall status` reports how fresh the index is; `recall status --json` gives `indexedAt`, `ageMs`, `changed`, `unseen`.
+
+You do not have to keep the index fresh. Every query runs an incremental catch-up first (~120 ms warm): all three tools, and `recall search` / `recall show` / `recall sql` on the CLI. If no index exists at all, the first query builds one (~35 s, once) and tells you it did. Pass that on to the user when it happens, and otherwise do not offer to run `recall index`: it is not what makes results current.
 
 ## What is not there
 
-- **Private conversations.** The user's config lists working directories that are indexed for them but never exposed to tools. If a thread comes back as private, do not try to route around it; tell the user.
+- **Private conversations.** The user's config lists working directories that are indexed for them but never exposed to tools. This holds for `recall_sql` too: the tables it queries are filtered, so a `COUNT(*)` is a count of what you may see, and `main.file`, `ATTACH` and `chunk_fts` are refused because they would go around that filter. If a thread comes back as private, do not try to route around it; tell the user.
 - **Full tool output.** Tool results are stored truncated or not at all (they are 42% of the bytes and rarely what anyone is looking for). The discussion is indexed; the command output usually is not. For full fidelity the original transcript is still on disk, and `recall search --regex` reads it.
 - **Anything the user chose to ignore.** Ignored directories were never read at all.
 

package/src/cli-main.ts

@@ -13,7 +13,7 @@ import {
 	tildify,
 	type Style,
 } from './format.js';
-import {index} from './indexer.js';
+import {freshness, index} from './indexer.js';
 import {TIERS, type ChunkKind, type SearchHit, type Tier} from './model.js';
 import {readRawEntry} from './pi-source.js';
 import {
@@ -40,8 +40,10 @@ COMMANDS
   search <query...>      Search transcripts, grouped by fork lineage
   search --regex <pat>   Exact regex search over the original transcripts
   show <ref>             Print a thread (file id, session uuid prefix, name or path)
+                         (show and sql sync first too; --no-sync skips it)
   sql <query>            Run a read-only SQL query against the index
   stats                  Summarise what is indexed
+  status                 How fresh the index is, and how much is pending
   config                 Show config paths, or write a starter config
   skills [install]       List or install the agent skill (into ~/.agents/skills)
 
@@ -160,15 +162,28 @@ function withTier(config: Config, tier: string | undefined): Config {
 	return {...config, tier: tier as Tier};
 }
 
-/** Cheap incremental catch-up so a query is never answered from a stale index. */
+/**
+ * Cheap incremental catch-up so a query is never answered from a stale index.
+ *
+ * A missing index builds itself here rather than failing. Telling somebody who
+ * just typed a search to go and type a different command first is a worse
+ * answer than taking ~35 s once and saying so.
+ */
 function sync(config: Config, quiet: boolean): void {
-	if (!fs.existsSync(config.dbPath)) {
-		fail(`no index at ${tildify(config.dbPath)}. Run \`recall index\` first.`);
+	// "Cold" is about whether a build has ever FINISHED, not whether a file is
+	// there: an interrupted first build leaves a file behind, and judging by
+	// existence alone would swallow the banner and hand the user a silent
+	// 35-second hang the second time too.
+	const cold = lastIndexedAt(config) === null;
+	if (cold && !quiet) {
+		process.stderr.write(
+			`recall: no index at ${tildify(config.dbPath)} yet, building it once (well under a minute)…\n`,
+		);
 	}
 	const stats = index({config, onProgress: () => {}});
 	if (!quiet && stats.filesIndexed > 0) {
 		process.stderr.write(
-			`recall: synced ${stats.filesIndexed} transcript(s) in ${stats.durationMs}ms\n`,
+			`recall: ${cold ? 'indexed' : 'synced'} ${stats.filesIndexed} transcript(s) in ${stats.durationMs}ms\n`,
 		);
 	}
 }
@@ -411,6 +426,7 @@ function cmdShow(argv: string[]): void {
 			limit: {type: 'string', default: '40'},
 			full: {type: 'boolean', default: false},
 			json: {type: 'boolean', default: false},
+			'no-sync': {type: 'boolean', default: false},
 		},
 		allowPositionals: true,
 	});
@@ -421,6 +437,10 @@ function cmdShow(argv: string[]): void {
 		);
 
 	const config = loadConfig();
+	// A thread can have grown since the search that found it, so this syncs too:
+	// "every query syncs before it answers" has to be true of all of them, or the
+	// sentence is not worth writing down.
+	if (!values['no-sync']) sync(config, Boolean(values.json));
 	const db = openDb(config.dbPath, {readOnly: true});
 	const thread = resolveThread(db, ref);
 	if (!thread) fail(`no thread matching "${ref}"`);
@@ -489,12 +509,14 @@ function cmdSql(argv: string[]): void {
 		options: {
 			json: {type: 'boolean', default: false},
 			limit: {type: 'string', default: '200'},
+			'no-sync': {type: 'boolean', default: false},
 		},
 		allowPositionals: true,
 	});
 	const sql = positionals.join(' ').trim();
 	if (!sql) fail('no SQL given');
 	const config = loadConfig();
+	if (!values['no-sync']) sync(config, Boolean(values.json));
 	const db = openDb(config.dbPath, {readOnly: true});
 	let rows: Array<Record<string, unknown>>;
 	try {
@@ -555,6 +577,85 @@ function cmdStats(argv: string[]): void {
 	db.close();
 }
 
+/** Epoch ms of the last COMPLETED catch-up, or null if one never finished. */
+function lastIndexedAt(config: Config): number | null {
+	if (!fs.existsSync(config.dbPath)) return null;
+	try {
+		const db = openDb(config.dbPath, {readOnly: true});
+		try {
+			const value = Number(getMeta(db, 'indexed_at') ?? NaN);
+			return Number.isFinite(value) ? value : null;
+		} finally {
+			db.close();
+		}
+	} catch {
+		return null;
+	}
+}
+
+/**
+ * `recall status`: how far behind the index is, without touching it.
+ *
+ * Every read path syncs before it answers, so this is not what keeps results
+ * correct. It exists so a human (or a scheduler asking whether it is earning
+ * its keep) can see the lag, and tell "nothing to do" apart from "the next
+ * query pays for a month of catch-up".
+ */
+function cmdStatus(argv: string[]): void {
+	const {values} = parseArgs({
+		args: argv,
+		options: {json: {type: 'boolean', default: false}},
+		allowPositionals: false,
+	});
+	const config = loadConfig();
+	const report = freshness(config);
+	const pending = report.changed + report.unseen + report.vanished;
+	if (values.json) {
+		process.stdout.write(
+			JSON.stringify(
+				{
+					...report,
+					pending,
+					indexedAt: report.indexedAt
+						? new Date(report.indexedAt).toISOString()
+						: null,
+				},
+				null,
+				2,
+			) + '\n',
+		);
+		return;
+	}
+	const style = makeStyle(colorsEnabled());
+	if (!report.exists) {
+		process.stdout.write(
+			[
+				`${style.bold('no index yet')} at ${tildify(report.dbPath)}`,
+				`${report.transcriptsOnDisk} transcript(s) on disk waiting to be indexed`,
+				style.dim('Run `recall index`, or just search: any query builds it.'),
+			].join('\n') + '\n',
+		);
+		return;
+	}
+	const verdict =
+		pending === 0
+			? style.bold('up to date')
+			: style.bold(`${pending} transcript(s) pending`);
+	process.stdout.write(
+		[
+			`${verdict} · last indexed ${relativeTime(report.indexedAt ? new Date(report.indexedAt).toISOString() : null)}`,
+			`${report.transcriptsIndexed} indexed · ${report.changed} changed · ${report.unseen} never seen · ${report.vanished} gone · ${report.transcriptsOnDisk} on disk`,
+			`tier ${report.tier ?? '?'} · db ${(report.dbBytes / 1e6).toFixed(1)} MB`,
+			style.dim(tildify(report.dbPath)),
+			style.dim(
+				pending === 0
+					? 'Every search syncs first, so this is informational.'
+					: `Every search syncs first, so those ${pending} will be folded in by the next query.`,
+			),
+		].join('\n') + '\n',
+	);
+}
+
 function cmdConfig(argv: string[]): void {
 	const {values} = parseArgs({
 		args: argv,
@@ -646,6 +747,8 @@ async function main(): Promise<void> {
 			return cmdSql(rest);
 		case 'stats':
 			return cmdStats(rest);
+		case 'status':
+			return cmdStatus(rest);
 		case 'config':
 			return cmdConfig(rest);
 		case 'skills':

package/src/db.ts

@@ -12,6 +12,19 @@ export const SCHEMA_VERSION = 1;
 
 export type DB = DatabaseSync;
 
+/**
+ * How long a connection waits for a writer to finish before giving up.
+ *
+ * Several processes share this index by design: the human's CLI, a pi
+ * extension flushing on shutdown, and any number of concurrent agents, each of
+ * which syncs before it queries. Without a busy timeout SQLite returns
+ * SQLITE_BUSY on the FIRST contended write, which surfaces to an agent as a
+ * failed recall. A warm catch-up takes ~120 ms and a cold build ~35 s, so 5 s
+ * covers every realistic overlap except a first-ever build, which is exactly
+ * the case where failing fast and reporting it is the honest answer.
+ */
+const BUSY_TIMEOUT_MS = 5_000;
+
 const SCHEMA = `
 CREATE TABLE IF NOT EXISTS meta(
   key TEXT PRIMARY KEY,
@@ -107,6 +120,15 @@ export interface OpenOptions {
 	readOnly?: boolean;
 	/** Throw instead of rebuilding when the schema version differs. */
 	noRebuild?: boolean;
+	/**
+	 * Leave `query_only` off on a read-only connection, so TEMP objects can be
+	 * created. The index file itself is still unwritable, because that comes
+	 * from opening it read-only, not from the pragma.
+	 *
+	 * This exists for one caller: the SQL tool shadows the real tables with temp
+	 * views so arbitrary queries cannot reach private transcripts.
+	 */
+	writableTemp?: boolean;
 }
 
 export function getMeta(db: DB, key: string): string | undefined {
@@ -133,13 +155,17 @@ export function openDb(dbPath: string, opts: OpenOptions = {}): DB {
 			throw new Error(`no index at ${dbPath}. Run \`recall index\` first.`);
 		}
 		const db = new DatabaseSync(dbPath, {readOnly: true});
-		db.exec('PRAGMA query_only = 1');
+		if (!opts.writableTemp) db.exec('PRAGMA query_only = 1');
+		// Readers do not block on writers under WAL, but they do contend with
+		// checkpointing, so the timeout matters here too.
+		db.exec(`PRAGMA busy_timeout = ${BUSY_TIMEOUT_MS}`);
 		return db;
 	}
 
 	fs.mkdirSync(path.dirname(dbPath), {recursive: true});
 	const fresh = !fs.existsSync(dbPath);
 	const db = new DatabaseSync(dbPath);
+	db.exec(`PRAGMA busy_timeout = ${BUSY_TIMEOUT_MS}`);
 	db.exec('PRAGMA journal_mode = WAL');
 	db.exec('PRAGMA synchronous = NORMAL');
 	db.exec('PRAGMA foreign_keys = OFF');

package/src/indexer.ts

@@ -20,6 +20,21 @@ export interface IndexOptions {
 	full?: boolean;
 	db?: DB;
 	onProgress?: (progress: IndexProgress) => void;
+	/**
+	 * Stop ingesting once this many ms have passed, leaving the rest for the
+	 * next run. Checked BETWEEN lineages, never inside one, so the per-lineage
+	 * transaction and the watermark-written-last rule both still hold.
+	 *
+	 * For callers that must not hang: a session shutting down after a long gap
+	 * could otherwise sit through a multi-second catch-up on the way out.
+	 *
+	 * It bounds the INGEST LOOP, not the whole run: the scan and the identity
+	 * pass ahead of it are ~120 ms on a 4,831-file corpus and always run. A full
+	 * rebuild is refused outright rather than truncated, see below.
+	 */
+	budgetMs?: number;
+	/** Clock seam, so the budget can be tested without racing a real one. */
+	now?: () => number;
 }
 
 export interface IndexProgress {
@@ -45,6 +60,8 @@ export interface IndexStats {
 	bytesRead: number;
 	durationMs: number;
 	fullRebuild: boolean;
+	/** True when `budgetMs` cut the run short and work is still outstanding. */
+	budgetExhausted: boolean;
 }
 
 interface FileRow {
@@ -78,7 +95,8 @@ function probe(file: string): {
 }
 
 export function index(opts: IndexOptions): IndexStats {
-	const started = Date.now();
+	const clock = opts.now ?? Date.now;
+	const started = clock();
 	const {config} = opts;
 	const db = opts.db ?? openDb(config.dbPath);
 	const report = opts.onProgress ?? (() => {});
@@ -99,6 +117,7 @@ export function index(opts: IndexOptions): IndexStats {
 		bytesRead: 0,
 		durationMs: 0,
 		fullRebuild: false,
+		budgetExhausted: false,
 	};
 
 	// A tier change alters what text exists at all, so it forces a rebuild.
@@ -107,6 +126,18 @@ export function index(opts: IndexOptions): IndexStats {
 	if (storedTier !== undefined && storedTier !== config.tier) full = true;
 	stats.fullRebuild = full;
 
+	// A rebuild is all-or-nothing: it DELETEs every chunk, entry and membership
+	// before reading a byte, so truncating one would leave an index that later
+	// queries would answer from as though it were complete. A budget means the
+	// caller cannot afford to finish, so the honest move is not to start.
+	// Reachable without `opts.full`: a tier change forces one (line above).
+	if (full && opts.budgetMs !== undefined) {
+		stats.budgetExhausted = true;
+		stats.durationMs = clock() - started;
+		if (!opts.db) db.close();
+		return stats;
+	}
+
 	const isIgnored = matcher(config.ignore);
 	const isPrivate = matcher(config.private);
 
@@ -397,6 +428,12 @@ export function index(opts: IndexOptions): IndexStats {
 
 	let done = 0;
 	for (const unit of work) {
+		// `>=` so that a budget of 0 means "do nothing", even on a machine fast
+		// enough to reach this in the same millisecond it started.
+		if (opts.budgetMs !== undefined && clock() - started >= opts.budgetMs) {
+			stats.budgetExhausted = true;
+			break;
+		}
 		db.exec('BEGIN');
 		try {
 			const lineageId = idOf.get(unit.lineageRoot);
@@ -493,10 +530,13 @@ export function index(opts: IndexOptions): IndexStats {
 	}
 
 	setMeta(db, 'tier', config.tier);
-	setMeta(db, 'indexed_at', String(Date.now()));
+	// Only claim to be caught up when we actually are. `indexed_at` is what the
+	// sync TTL reads, so advancing it after a budget-truncated run would let the
+	// next query skip the catch-up and answer from an index we KNOW is behind.
+	if (!stats.budgetExhausted) setMeta(db, 'indexed_at', String(Date.now()));
 	setMeta(db, 'roots', JSON.stringify(config.sources.map((s) => s.root)));
 
-	stats.durationMs = Date.now() - started;
+	stats.durationMs = clock() - started;
 	if (!opts.db) db.close();
 	return stats;
 }
@@ -512,6 +552,22 @@ export interface SyncResult {
 	stats?: IndexStats;
 }
 
+/**
+ * There is no index yet, as opposed to there being one that could not be read.
+ *
+ * The distinction is the whole point of the type. "No index" is fixed by
+ * building one; "index is locked" or "index is corrupt" is not, and a caller
+ * that collapses the two tells the user to run a command that will not help.
+ */
+export class MissingIndexError extends Error {
+	readonly dbPath: string;
+	constructor(dbPath: string) {
+		super(`no index at ${dbPath}`);
+		this.name = 'MissingIndexError';
+		this.dbPath = dbPath;
+	}
+}
+
 /**
  * Catch the index up, unless it was already synced within `ttlMs`.
  *
@@ -520,15 +576,137 @@ export interface SyncResult {
  * turn. The TTL is what makes "always fresh" affordable for callers that query
  * in a burst.
  */
-export function syncIfStale(config: Config, ttlMs = 15_000): SyncResult {
-	if (!fs.existsSync(config.dbPath))
-		throw new Error(`no index at ${config.dbPath}`);
+export function syncIfStale(
+	config: Config,
+	ttlMs = 15_000,
+	budgetMs?: number,
+): SyncResult {
+	if (!fs.existsSync(config.dbPath)) throw new MissingIndexError(config.dbPath);
 	const db = openDb(config.dbPath);
 	try {
 		const last = Number(getMeta(db, 'indexed_at') ?? 0);
 		if (Number.isFinite(last) && Date.now() - last < ttlMs) return {ran: false};
-		return {ran: true, stats: index({config, db})};
+		return {ran: true, stats: index({config, db, budgetMs})};
 	} finally {
 		db.close();
 	}
 }
+
+export interface Freshness {
+	dbPath: string;
+	exists: boolean;
+	dbBytes: number;
+	tier: string | null;
+	/** When the last catch-up finished, epoch ms. */
+	indexedAt: number | null;
+	ageMs: number | null;
+	/** Transcripts on disk, before ignore rules. */
+	transcriptsOnDisk: number;
+	/** Transcripts the index knows about. */
+	transcriptsIndexed: number;
+	/** Known transcripts that have grown or changed since their watermark. */
+	changed: number;
+	/**
+	 * Transcripts whose CONTENT is not in the index: never discovered, or
+	 * discovered but not yet ingested (a run cut short by its time budget
+	 * registers the file before reading it). Ignore rules applied.
+	 */
+	unseen: number;
+	/** Indexed transcripts no longer on disk, which the next sync will delete. */
+	vanished: number;
+	sources: string[];
+}
+
+/**
+ * How far behind the index is, without changing it.
+ *
+ * This is a `stat` pass over the corpus plus a header read for the few files
+ * the index has never seen, because whether a new file is ignored can only be
+ * decided from its header `cwd`, never from its mangled directory name.
+ * Measured at ~70 ms over 4,831 transcripts.
+ *
+ * Every read path already syncs before it answers, so this is not how anything
+ * stays correct: it is how a human or an agent can SEE the lag, and how they
+ * can tell "nothing to do" apart from "about to pay for a month of catch-up".
+ */
+export function freshness(config: Config): Freshness {
+	const report: Freshness = {
+		dbPath: config.dbPath,
+		exists: fs.existsSync(config.dbPath),
+		dbBytes: 0,
+		tier: null,
+		indexedAt: null,
+		ageMs: null,
+		transcriptsOnDisk: 0,
+		transcriptsIndexed: 0,
+		changed: 0,
+		unseen: 0,
+		vanished: 0,
+		sources: config.sources.map((s) => s.root),
+	};
+
+	// Null size/mtime means "row exists, content never ingested", which is a
+	// different thing from "ingested and since changed", so the nulls are kept.
+	const known = new Map<string, {size: number | null; mtime: number | null}>();
+	if (report.exists) {
+		report.dbBytes = fs.statSync(config.dbPath).size;
+		const db = openDb(config.dbPath, {readOnly: true});
+		try {
+			report.tier = getMeta(db, 'tier') ?? null;
+			const at = Number(getMeta(db, 'indexed_at') ?? NaN);
+			if (Number.isFinite(at)) {
+				report.indexedAt = at;
+				report.ageMs = Date.now() - at;
+			}
+			for (const row of db
+				.prepare('SELECT path, size, mtime FROM file')
+				.all() as unknown as Array<{
+				path: string;
+				size: number | null;
+				mtime: number | null;
+			}>) {
+				known.set(row.path, {
+					size: row.size === null ? null : num(row.size),
+					mtime: row.mtime === null ? null : num(row.mtime),
+				});
+			}
+		} finally {
+			db.close();
+		}
+	}
+	report.transcriptsIndexed = known.size;
+
+	const isIgnored = matcher(config.ignore);
+	// Tracked so a deletion counts as pending work too: reporting "up to date"
+	// while the next sync still has N `deleteFile` calls to make would undercut
+	// the only thing this command is for.
+	const seen = new Set<string>();
+	for (const source of config.sources) {
+		if (!fs.existsSync(source.root)) continue;
+		for (const file of listTranscripts(source.root)) {
+			report.transcriptsOnDisk++;
+			let st: fs.Stats;
+			try {
+				st = fs.statSync(file);
+			} catch {
+				continue;
+			}
+			seen.add(file);
+			const row = known.get(file);
+			if (!row) {
+				// Only a file the index has never heard of has to be opened, and only
+				// because the ignore rules match the header cwd, never the mangled
+				// directory name.
+				const header = readHeader(file);
+				if (header && !isIgnored(header.cwd ?? file)) report.unseen++;
+				continue;
+			}
+			if (row.size === null || row.mtime === null) report.unseen++;
+			else if (row.size !== st.size || row.mtime !== Math.floor(st.mtimeMs))
+				report.changed++;
+		}
+	}
+	for (const knownPath of known.keys())
+		if (!seen.has(knownPath)) report.vanished++;
+	return report;
+}

package/dist/silence-sqlite-warning.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=silence-sqlite-warning.d.ts.map

package/dist/silence-sqlite-warning.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"silence-sqlite-warning.d.ts","sourceRoot":"","sources":["../src/silence-sqlite-warning.ts"],"names":[],"mappings":""}

package/dist/silence-sqlite-warning.js

@@ -1,9 +0,0 @@
-import { silenceSqliteWarning } from './quiet.js';
-/**
- * Side-effect module. Imported FIRST by the CLI so the patch is installed
- * before `node:sqlite` is ever loaded: ES modules evaluate all imports before
- * the importing module's body runs, so calling the function from `main()` would
- * be far too late.
- */
-silenceSqliteWarning();
-//# sourceMappingURL=silence-sqlite-warning.js.map

package/dist/silence-sqlite-warning.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"silence-sqlite-warning.js","sourceRoot":"","sources":["../src/silence-sqlite-warning.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,oBAAoB,EAAC,MAAM,YAAY,CAAC;AAEhD;;;;;GAKG;AACH,oBAAoB,EAAE,CAAC"}