memonaut-pi 0.1.2 → 0.2.0

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EACX,YAAY,EAEZ,MAAM,iCAAiC,CAAC;AAwBzC,MAAM,CAAC,OAAO,UAAU,SAAS,CAAC,EAAE,EAAE,YAAY,GAAG,IAAI,CA+HxD"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EACX,YAAY,EAEZ,MAAM,iCAAiC,CAAC;AA8BzC,MAAM,CAAC,OAAO,UAAU,SAAS,CAAC,EAAE,EAAE,YAAY,GAAG,IAAI,CA+IxD"}

package/dist/index.js

@@ -1,6 +1,6 @@
 import { silenceSqliteWarning } from 'memonaut';
 import { Type } from 'typebox';
-import { runSearch, runSql, runThread } from './queries.js';
+import { flushIndex, runSearch, runSql, runThread, } from './queries.js';
 /**
  * memonaut as a pi extension: three read-only tools over the transcript index.
  *
@@ -21,6 +21,18 @@ function result(outcome) {
     };
 }
 export default function extension(pi) {
+    // Keep the index warm at the two moments a transcript stops growing, which is
+    // what a cron job would otherwise be for. A warm catch-up is ~120 ms, it is
+    // TTL-debounced, it never builds from scratch (that would hang a quit for
+    // ~35 s) and it never throws, because the next query syncs anyway.
+    pi.on('agent_settled', () => {
+        flushIndex();
+    });
+    pi.on('session_shutdown', () => {
+        // The session file is final now, so the TTL is not worth respecting: this
+        // is the last chance to fold this conversation in before the process dies.
+        flushIndex({ force: true });
+    });
     pi.registerTool({
         name: 'recall_search',
         label: 'Recall Search',
@@ -99,8 +111,11 @@ export default function extension(pi) {
             'aggregates rather than searches ("which projects did I work on in July", "how many sessions ' +
             'mention this tool", "when did this conversation start"). Tables: file(id, path, cwd, project, ' +
             'name, parent_id, lineage_id, private, started, last_activity, entry_count), entry(id, lineage_id, ' +
-            'entry_key, role, tool, ts), membership(entry_id, file_id, seq), chunk(entry_id, kind, text), and ' +
-            'the FTS index chunk_fts. Prefer recall_search for anything that is really a text search.',
+            'entry_key, role, tool, ts), membership(entry_id, file_id, seq), chunk(entry_id, kind, text). ' +
+            'Transcripts the user marked private are filtered out of all four, so counts here are counts of ' +
+            'what you are allowed to see. Schema-qualified names (main.file) and ATTACH are refused because ' +
+            'they would bypass that filter. Prefer recall_search for anything that is really a text search; ' +
+            'the chunk_fts index is not queryable here.',
         promptSnippet: 'Run a read-only SQL aggregate over the conversation index',
         promptGuidelines: [
             'Use recall_sql for counting and grouping questions about past sessions, and recall_search for finding what was said.',

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,oBAAoB,EAAC,MAAM,UAAU,CAAC;AAC9C,OAAO,EAAC,IAAI,EAAC,MAAM,SAAS,CAAC;AAK7B,OAAO,EACN,UAAU,EACV,SAAS,EACT,MAAM,EACN,SAAS,GAET,MAAM,cAAc,CAAC;AAEtB;;;;;;;;;;GAUG;AACH,oBAAoB,EAAE,CAAC;AAEvB,SAAS,MAAM,CAAC,OAAoB;IACnC,OAAO;QACN,OAAO,EAAE,CAAC,EAAC,IAAI,EAAE,MAAe,EAAE,IAAI,EAAE,OAAO,CAAC,IAAI,EAAC,CAAC;QACtD,OAAO,EAAE,OAAO,CAAC,OAAO;QACxB,GAAG,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,EAAC,OAAO,EAAE,IAAI,EAAC,CAAC,CAAC,CAAC,EAAE,CAAC;KAC3C,CAAC;AACH,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,SAAS,CAAC,EAAgB;IACjD,8EAA8E;IAC9E,4EAA4E;IAC5E,0EAA0E;IAC1E,mEAAmE;IACnE,EAAE,CAAC,EAAE,CAAC,eAAe,EAAE,GAAG,EAAE;QAC3B,UAAU,EAAE,CAAC;IACd,CAAC,CAAC,CAAC;IACH,EAAE,CAAC,EAAE,CAAC,kBAAkB,EAAE,GAAG,EAAE;QAC9B,0EAA0E;QAC1E,2EAA2E;QAC3E,UAAU,CAAC,EAAC,KAAK,EAAE,IAAI,EAAC,CAAC,CAAC;IAC3B,CAAC,CAAC,CAAC;IAEH,EAAE,CAAC,YAAY,CAAC;QACf,IAAI,EAAE,eAAe;QACrB,KAAK,EAAE,eAAe;QACtB,WAAW,EACV,gGAAgG;YAChG,2FAA2F;YAC3F,+FAA+F;YAC/F,wFAAwF;YACxF,+FAA+F;YAC/F,8FAA8F;YAC9F,mGAAmG;YACnG,+FAA+F;YAC/F,kGAAkG;YAClG,6FAA6F;YAC7F,0DAA0D;QAC3D,aAAa,EACZ,4FAA4F;QAC7F,gBAAgB,EAAE;YACjB,4IAA4I;YAC5I,sHAAsH;SACtH;QACD,UAAU,EAAE,IAAI,CAAC,MAAM,CAAC;YACvB,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC;gBAClB,WAAW,EACV,8FAA8F;aAC/F,CAAC;YACF,OAAO,EAAE,IAAI,CAAC,QAAQ,CACrB,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE;gBACzB,WAAW,EACV,8FAA8F;aAC/F,CAAC,CACF;YACD,GAAG,EAAE,IAAI,CAAC,QAAQ,CACjB,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE;gBACzB,WAAW,EACV,gEAAgE;aACjE,CAAC,CACF;YACD,IAAI,EAAE,IAAI,CAAC,QAAQ,CAClB,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE;gBACzB,WAAW,EACV,qEAAqE;aACtE,CAAC,CACF;YACD,IAAI,EAAE,IAAI,CAAC,QAAQ,CAClB,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE;gBACzB,WAAW,EAAE,gDAAgD;aAC7D,CAAC,CACF;YACD,KAAK,EAAE,IAAI,CAAC,QAAQ,CACnB,IAAI,CAAC,MAAM,CAAC,EAAC,WAAW,EAAE,0CAA0C,EAAC,CAAC,CACtE;YACD,KAAK,EAAE,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,EAAC,WAAW,EAAE,uBAAuB,EAAC,CAAC,CAAC;YACzE,KAAK,EAAE,IAAI,CAAC,QAAQ,CACnB,IAAI,CAAC,MAAM,CAAC;gBACX,WAAW,EAAE,4CAA4C;aACzD,CAAC,CACF;YACD,OAAO,EAAE,IAAI,CAAC,QAAQ,CACrB,IAAI,CAAC,MAAM,CAAC;gBACX,WAAW,EAAE,qDAAqD;aAClE,CAAC,CACF;SACD,CAAC;QACF,KAAK,CAAC,OAAO,CAAC,WAAmB,EAAE,MAA+B;YACjE,OAAO,MAAM,CACZ,SAAS,CAAC,MAAoD,CAAC,CAC/D,CAAC;QACH,CAAC;KAC4B,CAAC,CAAC;IAEhC,EAAE,CAAC,YAAY,CAAC;QACf,IAAI,EAAE,eAAe;QACrB,KAAK,EAAE,eAAe;QACtB,WAAW,EACV,+FAA+F;YAC/F,+FAA+F;YAC/F,6FAA6F;YAC7F,+FAA+F;YAC/F,sBAAsB;QACvB,aAAa,EAAE,kDAAkD;QACjE,gBAAgB,EAAE;YACjB,mJAAmJ;SACnJ;QACD,UAAU,EAAE,IAAI,CAAC,MAAM,CAAC;YACvB,GAAG,EAAE,IAAI,CAAC,MAAM,CAAC;gBAChB,WAAW,EACV,8EAA8E;aAC/E,CAAC;YACF,IAAI,EAAE,IAAI,CAAC,QAAQ,CAClB,IAAI,CAAC,MAAM,CAAC,EAAC,WAAW,EAAE,sCAAsC,EAAC,CAAC,CAClE;YACD,KAAK,EAAE,IAAI,CAAC,QAAQ,CACnB,IAAI,CAAC,MAAM,CAAC,EAAC,WAAW,EAAE,wCAAwC,EAAC,CAAC,CACpE;SACD,CAAC;QACF,KAAK,CAAC,OAAO,CAAC,WAAmB,EAAE,MAA+B;YACjE,OAAO,MAAM,CACZ,SAAS,CAAC,MAAoD,CAAC,CAC/D,CAAC;QACH,CAAC;KAC4B,CAAC,CAAC;IAEhC,EAAE,CAAC,YAAY,CAAC;QACf,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,YAAY;QACnB,WAAW,EACV,gGAAgG;YAChG,8FAA8F;YAC9F,gGAAgG;YAChG,oGAAoG;YACpG,+FAA+F;YAC/F,iGAAiG;YACjG,iGAAiG;YACjG,iGAAiG;YACjG,4CAA4C;QAC7C,aAAa,EAAE,2DAA2D;QAC1E,gBAAgB,EAAE;YACjB,sHAAsH;SACtH;QACD,UAAU,EAAE,IAAI,CAAC,MAAM,CAAC;YACvB,GAAG,EAAE,IAAI,CAAC,MAAM,CAAC;gBAChB,WAAW,EAAE,oDAAoD;aACjE,CAAC;SACF,CAAC;QACF,KAAK,CAAC,OAAO,CAAC,WAAmB,EAAE,MAA+B;YACjE,OAAO,MAAM,CAAC,MAAM,CAAC,MAAM,CAAE,MAAyB,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;QACrE,CAAC;KAC4B,CAAC,CAAC;AACjC,CAAC"}

package/dist/queries.d.ts

@@ -16,9 +16,30 @@ export interface ToolOptions {
     maxChars?: number;
     /** Skip the incremental catch-up if the index was synced this recently. */
     syncTtlMs?: number;
+    /** Build the index inline when there is none. Default true. */
+    autoBuild?: boolean;
     config?: Config;
     now?: number;
 }
+export interface ReadinessNote {
+    /** Prefixed to the tool output when the agent should know something. */
+    note?: string;
+    details: Record<string, unknown>;
+}
+/**
+ * Catch the index up outside of any query, for a caller that knows a
+ * transcript just stopped growing (a session ending, an agent going idle).
+ *
+ * Never builds: a cold build at session shutdown would hang a quit for ~35 s.
+ * Never throws: a failed flush is not worth interrupting anything for, because
+ * the next query syncs anyway.
+ * Never overruns its budget by more than one lineage: a session that has been
+ * away for a month must not stall on the way out. Whatever is left stays
+ * pending, and `indexed_at` is not advanced, so the next query still syncs.
+ */
+export declare function flushIndex(opts?: ToolOptions & {
+    force?: boolean;
+}): boolean;
 export interface SearchParams {
     query: string;
     project?: string[];

package/dist/queries.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"queries.d.ts","sourceRoot":"","sources":["../src/queries.ts"],"names":[],"mappings":"AAEA,OAAO,EAeN,KAAK,MAAM,EAEX,MAAM,UAAU,CAAC;AAElB;;;;;;GAMG;AAEH,MAAM,WAAW,WAAW;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAClC,OAAO,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,MAAM,WAAW,WAAW;IAC3B,2EAA2E;IAC3E,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,2EAA2E;IAC3E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,+DAA+D;IAC/D,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,GAAG,CAAC,EAAE,MAAM,CAAC;CACb;AAqHD,MAAM,WAAW,aAAa;IAC7B,wEAAwE;IACxE,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACjC;AA0FD;;;;;;;;;;GAUG;AACH,wBAAgB,UAAU,CACzB,IAAI,GAAE,WAAW,GAAG;IAAC,KAAK,CAAC,EAAE,OAAO,CAAA;CAAM,GACxC,OAAO,CAeT;AA8BD,MAAM,WAAW,YAAY;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,GAAG,CAAC,EAAE,MAAM,EAAE,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,OAAO,CAAC,EAAE,MAAM,CAAC;CACjB;AAiCD,wBAAgB,SAAS,CACxB,MAAM,EAAE,YAAY,EACpB,IAAI,GAAE,WAAgB,GACpB,WAAW,CAuFb;AAED,MAAM,WAAW,YAAY;IAC5B,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAgB,SAAS,CACxB,MAAM,EAAE,YAAY,EACpB,IAAI,GAAE,WAAgB,GACpB,WAAW,CAmEb;AA6ED,wBAAgB,MAAM,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,WAAgB,GAAG,WAAW,CAgDvE"}

package/dist/queries.js

@@ -1,4 +1,6 @@
-import { indexStats, loadConfig, openDb, readThread, relativeTime, resolveThread, search, syncIfStale, tildify, } from 'memonaut';
+import fs from 'node:fs';
+import os from 'node:os';
+import { getMeta, index, indexStats, loadConfig, MissingIndexError, openDb, readThread, relativeTime, resolveThread, search, syncIfStale, tildify, } from 'memonaut';
 const DEFAULT_MAX_CHARS = 6000;
 function options(opts) {
     const config = opts.config ?? loadConfig();
@@ -6,17 +8,205 @@ function options(opts) {
         maxChars: opts.maxChars ??
             Number(process.env.MEMONAUT_TOOL_MAX_CHARS ?? DEFAULT_MAX_CHARS),
         syncTtlMs: opts.syncTtlMs ?? Number(process.env.MEMONAUT_TOOL_SYNC_TTL_MS ?? 15_000),
+        autoBuild: opts.autoBuild ?? process.env.MEMONAUT_NO_AUTO_BUILD !== '1',
         config,
     };
 }
-function missingIndex(config) {
+/**
+ * An error message, with anything that identifies a transcript removed.
+ *
+ * `fs` failures quote the path they failed on, and a transcript path contains
+ * the mangled cwd, so an EACCES inside a private conversation would otherwise
+ * disclose that conversation's existence and location through a tool result.
+ * Invariant 8 is absolute, and it covers existence, not just content.
+ */
+function safeMessage(err) {
+    const raw = String(err?.message ?? err);
+    return raw
+        .replace(/\S*\.jsonl/g, '<transcript>')
+        .split(os.homedir())
+        .join('~');
+}
+function missingIndex(config, why) {
     return {
         isError: true,
-        text: `No transcript index exists yet at ${tildify(config.dbPath)}.\n` +
-            'Tell the user to run `recall index` once (it takes well under a minute), ' +
+        text: `No transcript index exists yet at ${tildify(config.dbPath)}` +
+            (why ? `, and building one failed: ${why}` : '.') +
+            '\nTell the user to run `recall index` once (it takes well under a minute), ' +
             'or run it yourself with bash if they have already agreed to that.',
     };
 }
+/** The index is there but unusable: a different problem, with a different fix. */
+function unusableIndex(config, why) {
+    return {
+        isError: true,
+        text: `The transcript index at ${tildify(config.dbPath)} exists but could not be opened: ${why}\n` +
+            'The index is a derived cache, so nothing is lost by rebuilding it: tell the user to run ' +
+            '`recall index --full`. Do not report this as "no past conversations".',
+    };
+}
+/**
+ * Open the index for reading, or explain the failure as a tool result.
+ *
+ * `ready()` only proves the file existed a moment ago. It can still be gone,
+ * truncated, or written by a newer schema by the time we open it, and an
+ * exception thrown out of `execute()` is worse for an agent than an outcome
+ * carrying instructions.
+ */
+function openIndex(config, opts = {}) {
+    let db;
+    try {
+        db = openDb(config.dbPath, { readOnly: true, ...opts });
+        // SQLite opens lazily, so a file that is not a database at all only fails
+        // on the first real statement, which would otherwise be somewhere deep in
+        // a query. One trivial read moves that failure to where it is handled.
+        db.prepare('SELECT 1 FROM meta LIMIT 1').get();
+        return db;
+    }
+    catch (err) {
+        db?.close();
+        return fs.existsSync(config.dbPath)
+            ? unusableIndex(config, safeMessage(err))
+            : missingIndex(config);
+    }
+}
+/** Epoch ms of the last COMPLETED catch-up, or null if one never finished. */
+function lastIndexedAt(config) {
+    try {
+        const db = openDb(config.dbPath, { readOnly: true });
+        try {
+            const value = Number(getMeta(db, 'indexed_at') ?? NaN);
+            return Number.isFinite(value) ? value : null;
+        }
+        finally {
+            db.close();
+        }
+    }
+    catch {
+        return null;
+    }
+}
+/**
+ * One cold build per process, at most.
+ *
+ * A first build is ~35 s for 4,831 transcripts. Paying that inside a tool call
+ * is far better than answering "no index" and hoping somebody runs the CLI,
+ * but paying it three times in one turn because the data directory is not
+ * writable is not, so that failure is remembered rather than retried.
+ *
+ * Narrow by construction: this memo is only consulted when the DB FILE is
+ * absent, and `openDb` creates the file early, so it covers the cannot-create
+ * case and not a build that died partway. That one is retried, which is the
+ * behaviour you want anyway, since it resumes from its watermarks.
+ */
+let coldBuildFailed = null;
+/**
+ * Make sure there is an index and that it is caught up, or explain why not.
+ *
+ * Three outcomes, deliberately kept apart:
+ *   - no index at all -> build it once, inline, and say so;
+ *   - index present but the catch-up failed (locked by a concurrent writer,
+ *     disk full) -> answer from what IS indexed and flag the staleness, since
+ *     a slightly old answer beats no answer;
+ *   - build failed -> the only case that is a real error.
+ */
+function ready(config, ttlMs, autoBuild) {
+    try {
+        const result = syncIfStale(config, ttlMs);
+        return {
+            details: {
+                synced: result.ran,
+                ...(result.stats ? { syncedFiles: result.stats.filesIndexed } : {}),
+            },
+        };
+    }
+    catch (err) {
+        if (!(err instanceof MissingIndexError)) {
+            // The index exists; only the catch-up failed, most often because another
+            // process holds the write lock for longer than the busy timeout.
+            //
+            // How stale it is must be READ, never assumed: a cold build that was
+            // killed leaves a file that exists, has no `indexed_at`, and may hold
+            // almost nothing. Telling an agent "missing the last few minutes" there
+            // would turn a 95%-empty index into a confident "we never discussed it".
+            const why = safeMessage(err);
+            const at = lastIndexedAt(config);
+            const how = at === null
+                ? 'and it has never finished a build, so it is INCOMPLETE by an unknown amount. Treat "no matches" as "unknown", not as "no", and say so'
+                : `and it was last brought up to date ${relativeTime(new Date(at).toISOString())}, so anything since then is missing`;
+            return {
+                note: `(the index could not be updated just now: ${why}, ${how}.)`,
+                details: {
+                    synced: false,
+                    syncError: why,
+                    indexedAt: at === null ? null : new Date(at).toISOString(),
+                },
+            };
+        }
+        if (!autoBuild)
+            return missingIndex(config);
+        if (coldBuildFailed !== null)
+            return missingIndex(config, coldBuildFailed);
+        try {
+            const stats = index({ config });
+            return {
+                note: `(no index existed, so one was built just now: ${stats.filesIndexed} conversations in ${(stats.durationMs / 1000).toFixed(1)}s. Worth telling the user, since it happens once.)`,
+                details: {
+                    built: true,
+                    syncedFiles: stats.filesIndexed,
+                    buildMs: stats.durationMs,
+                },
+            };
+        }
+        catch (buildErr) {
+            coldBuildFailed = safeMessage(buildErr);
+            return missingIndex(config, coldBuildFailed);
+        }
+    }
+}
+function isOutcome(value) {
+    return typeof value.text === 'string';
+}
+/**
+ * How long a lifecycle flush may spend before leaving the rest to the next one.
+ * A warm catch-up is ~120 ms, so this only bites after a long gap, which is
+ * precisely when a session must not stall on its way out.
+ */
+const FLUSH_BUDGET_MS = 2_000;
+/**
+ * A truncated flush deliberately leaves `indexed_at` alone, which also means
+ * the 15 s TTL can never short-circuit until one run completes. Without this,
+ * an agent that is far behind pays the full budget on EVERY turn. Queries are
+ * unaffected: they sync unbudgeted and will finish the job properly.
+ */
+const TRUNCATED_FLUSH_RETRY_MS = 60_000;
+let lastTruncatedFlush = 0;
+/**
+ * Catch the index up outside of any query, for a caller that knows a
+ * transcript just stopped growing (a session ending, an agent going idle).
+ *
+ * Never builds: a cold build at session shutdown would hang a quit for ~35 s.
+ * Never throws: a failed flush is not worth interrupting anything for, because
+ * the next query syncs anyway.
+ * Never overruns its budget by more than one lineage: a session that has been
+ * away for a month must not stall on the way out. Whatever is left stays
+ * pending, and `indexed_at` is not advanced, so the next query still syncs.
+ */
+export function flushIndex(opts = {}) {
+    try {
+        const { config, syncTtlMs } = options(opts);
+        const now = opts.now ?? Date.now();
+        if (now - lastTruncatedFlush < TRUNCATED_FLUSH_RETRY_MS)
+            return false;
+        const result = syncIfStale(config, opts.force ? 0 : syncTtlMs, FLUSH_BUDGET_MS);
+        if (result.stats?.budgetExhausted)
+            lastTruncatedFlush = now;
+        return result.ran;
+    }
+    catch {
+        return false;
+    }
+}
 /** Strip FTS5 highlight markers down to something readable in a tool result. */
 function cleanSnippet(snippet) {
     return snippet
@@ -25,6 +215,10 @@ function cleanSnippet(snippet) {
         .replace(/\u0002/g, '>>')
         .trim();
 }
+/** Freshness notes go FIRST: an agent that stops reading early still sees them. */
+function withNote(text, note) {
+    return note ? `${note}\n\n${text}` : text;
+}
 function truncate(lines, maxChars, tail) {
     const out = [];
     let used = 0;
@@ -60,15 +254,15 @@ function renderHit(hit, position, now) {
     return lines;
 }
 export function runSearch(params, opts = {}) {
-    const { config, maxChars, syncTtlMs } = options(opts);
+    const { config, maxChars, syncTtlMs, autoBuild } = options(opts);
     const now = opts.now ?? Date.now();
-    try {
-        syncIfStale(config, syncTtlMs);
-    }
-    catch {
-        return missingIndex(config);
-    }
-    const db = openDb(config.dbPath, { readOnly: true });
+    const state = ready(config, syncTtlMs, autoBuild);
+    if (isOutcome(state))
+        return state;
+    const opened = openIndex(config);
+    if (isOutcome(opened))
+        return opened;
+    const db = opened;
     try {
         const limit = Math.min(Math.max(params.limit ?? 8, 1), 50);
         const outcome = search(db, {
@@ -89,11 +283,15 @@ export function runSearch(params, opts = {}) {
         }, now);
         if (outcome.hits.length === 0) {
             const stats = indexStats(db);
+            // The count must exclude private transcripts. They were not searched, so
+            // including them would both overstate the search AND disclose how many
+            // conversations the user is holding back.
+            const searched = Number(stats.files) - Number(stats.privateFiles ?? 0);
             return {
-                text: `No matches for: ${outcome.usedQuery}\n` +
-                    `Searched ${stats.files} conversations across ${stats.projects} projects.\n` +
-                    'Try fewer words, a quoted phrase, OR between alternatives, or drop the filters.',
-                details: { hits: 0, usedQuery: outcome.usedQuery },
+                text: withNote(`No matches for: ${outcome.usedQuery}\n` +
+                    `Searched ${searched} conversations across ${stats.projects} projects.\n` +
+                    'Try fewer words, a quoted phrase, OR between alternatives, or drop the filters.', state.note),
+                details: { hits: 0, usedQuery: outcome.usedQuery, ...state.details },
             };
         }
         const scope = params.project?.length
@@ -107,8 +305,9 @@ export function runSearch(params, opts = {}) {
         lines.push('');
         lines.push('Use recall_thread with a thread number to read one in full.');
         return {
-            text: truncate(lines, maxChars, 'Narrow with project/since or lower limit.'),
+            text: withNote(truncate(lines, maxChars, 'Narrow with project/since or lower limit.'), state.note),
             details: {
+                ...state.details,
                 usedQuery: outcome.usedQuery,
                 quotedFallback: outcome.quotedFallback,
                 hits: outcome.hits.map((h) => ({
@@ -124,19 +323,24 @@ export function runSearch(params, opts = {}) {
             },
         };
     }
+    catch (err) {
+        // Nothing may escape `execute()`: an agent can act on an error outcome
+        // that carries instructions, and can do nothing at all with a stack trace.
+        return unusableIndex(config, safeMessage(err));
+    }
     finally {
         db.close();
     }
 }
 export function runThread(params, opts = {}) {
-    const { config, maxChars } = options(opts);
-    let db;
-    try {
-        db = openDb(config.dbPath, { readOnly: true });
-    }
-    catch {
-        return missingIndex(config);
-    }
+    const { config, maxChars, syncTtlMs, autoBuild } = options(opts);
+    const state = ready(config, syncTtlMs, autoBuild);
+    if (isOutcome(state))
+        return state;
+    const opened = openIndex(config);
+    if (isOutcome(opened))
+        return opened;
+    const db = opened;
     try {
         const thread = resolveThread(db, String(params.ref));
         if (!thread)
@@ -169,8 +373,9 @@ export function runThread(params, opts = {}) {
             lines.push(`(showing ${from}-${end} of ${thread.entry_count}; call again with from=${end} to continue)`);
         }
         return {
-            text: truncate(lines, maxChars, `Call again with from=${from + Math.floor(limit / 2)} and a smaller limit.`),
+            text: withNote(truncate(lines, maxChars, `Call again with from=${from + Math.floor(limit / 2)} and a smaller limit.`), state.note),
             details: {
+                ...state.details,
                 threadId: thread.id,
                 from,
                 count: entries.length,
@@ -178,40 +383,125 @@ export function runThread(params, opts = {}) {
             },
         };
     }
+    catch (err) {
+        return unusableIndex(config, safeMessage(err));
+    }
     finally {
-        db?.close();
+        db.close();
     }
 }
+/**
+ * Reasons an arbitrary query is refused before it runs.
+ *
+ * The private filter below works by SHADOWING, so anything that can dodge name
+ * resolution has to be refused: a schema qualifier reaches the real table, and
+ * ATTACH introduces a schema whose names we never shadowed. `chunk_fts` is
+ * refused because an FTS index cannot be shadowed by a view that still
+ * supports MATCH, and full-text search is what recall_search is for anyway.
+ */
+function sqlRefusal(sql) {
+    // Comments and string literals first: they can legally contain any of this.
+    const bare = sql
+        .replace(/--[^\n]*/g, ' ')
+        .replace(/\/\*[\s\S]*?\*\//g, ' ')
+        .replace(/'[^']*'/g, "''")
+        .replace(/"([^"]*)"/g, '$1')
+        .toLowerCase();
+    if (/\battach\b/.test(bare))
+        return 'ATTACH is not allowed: only the transcript index is queryable.';
+    if (/\b(main|temp|sqlite_temp_master|sqlite_master)\s*\./.test(bare))
+        return ('Schema-qualified names (main.file, temp.file) are not allowed, because they bypass ' +
+            'the filter that hides transcripts the user marked private. Use the bare table name.');
+    if (/\bchunk_fts\b/.test(bare))
+        return 'chunk_fts is not queryable here. Use recall_search for full-text search.';
+    return null;
+}
+/**
+ * Hide private transcripts from arbitrary SQL, by shadowing.
+ *
+ * SQLite resolves an unqualified name in the TEMP schema first, so a temp view
+ * called `file` is what `SELECT ... FROM file` finds, while the real table
+ * stays reachable only as `main.file`, which `sqlRefusal` blocks. That keeps
+ * the documented schema exactly as it was: no `_public` suffixes to teach, no
+ * query rewriting, and no cost at all when nothing is private, which is the
+ * common case.
+ *
+ * Visibility follows `visibleSets()` in core: it is decided per FILE, and an
+ * entry belongs to whoever owns it (`first_file`). An entry owned by a private
+ * transcript stays hidden even where a public fork inherited it, which errs
+ * towards hiding.
+ *
+ * Needs a connection WITHOUT `query_only`, which refuses temp writes as well;
+ * `readOnly` alone already makes the index itself unwritable.
+ *
+ * Measured on a 617k-entry index when private transcripts DO exist: a full
+ * `COUNT(*) FROM entry` goes 343 ms -> 812 ms, and `COUNT(*) FROM chunk` goes
+ * 99 ms -> 191 ms, the join being cheap because it hits `entry.id`, the
+ * primary key. Not worth an index on `entry.first_file`: that would be a
+ * schema bump, hence a full rebuild for everyone, to speed up unfiltered
+ * aggregates for the subset of users who mark anything private.
+ */
+function hidePrivate(db) {
+    const privateIds = db
+        .prepare('SELECT id FROM main.file WHERE private = 1')
+        .all().map((row) => Number(row.id));
+    if (privateIds.length === 0)
+        return;
+    const ids = privateIds.join(',');
+    db.exec(`
+    CREATE TEMP VIEW file AS
+      SELECT * FROM main.file WHERE id NOT IN (${ids});
+    CREATE TEMP VIEW entry AS
+      SELECT * FROM main.entry WHERE first_file IS NULL OR first_file NOT IN (${ids});
+    CREATE TEMP VIEW membership AS
+      SELECT * FROM main.membership WHERE file_id NOT IN (${ids});
+    CREATE TEMP VIEW chunk AS
+      SELECT c.* FROM main.chunk c JOIN main.entry e ON e.id = c.entry_id
+      WHERE e.first_file IS NULL OR e.first_file NOT IN (${ids});
+  `);
+}
 export function runSql(sql, opts = {}) {
-    const { config, maxChars } = options(opts);
-    let db;
-    try {
-        db = openDb(config.dbPath, { readOnly: true });
-    }
-    catch {
-        return missingIndex(config);
-    }
+    const { config, maxChars, syncTtlMs, autoBuild } = options(opts);
+    const refusal = sqlRefusal(sql);
+    if (refusal)
+        return { isError: true, text: refusal };
+    const state = ready(config, syncTtlMs, autoBuild);
+    if (isOutcome(state))
+        return state;
+    const opened = openIndex(config, { writableTemp: true });
+    if (isOutcome(opened))
+        return opened;
+    const db = opened;
     try {
+        hidePrivate(db);
         const rows = db.prepare(sql).all();
         if (rows.length === 0)
-            return { text: '(no rows)', details: { rows: 0 } };
+            return {
+                text: withNote('(no rows)', state.note),
+                details: { rows: 0, ...state.details },
+            };
         const lines = rows.slice(0, 200).map((row) => JSON.stringify(row));
         return {
-            text: truncate([`${rows.length} row(s):`, ...lines], maxChars, 'Add a LIMIT or aggregate instead.'),
-            details: { rows: rows.length },
+            text: withNote(truncate([`${rows.length} row(s):`, ...lines], maxChars, 'Add a LIMIT or aggregate instead.'), state.note),
+            details: { rows: rows.length, ...state.details },
         };
     }
     catch (err) {
+        // A broken index is not a broken query, and handing back a schema lecture
+        // for "file is not a database" would send the agent rewriting valid SQL.
+        const message = safeMessage(err);
+        if (/not a database|malformed|disk image|corrupt/i.test(message))
+            return unusableIndex(config, message);
         return {
             isError: true,
-            text: `SQL failed: ${err.message}\n` +
+            text: `SQL failed: ${message}\n` +
                 'Tables: file(id, path, cwd, project, name, parent_id, lineage_id, private, started, last_activity, entry_count), ' +
                 'entry(id, lineage_id, entry_key, role, tool, ts), membership(entry_id, file_id, seq), chunk(entry_id, kind, text). ' +
-                'The connection is read-only.',
+                'The connection is read-only, private transcripts are filtered out, and chunk_fts is not queryable here.',
         };
     }
     finally {
-        db?.close();
+        db.close();
     }
 }
 //# sourceMappingURL=queries.js.map

package/dist/queries.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "memonaut-pi",
-  "version": "0.1.2",
+  "version": "0.2.0",
   "description": "pi tool + skill for memonaut: let the agent search past conversation transcripts",
   "license": "AGPL-3.0-only",
   "repository": {
@@ -48,7 +48,7 @@
     ]
   },
   "dependencies": {
-    "memonaut": "0.3.0"
+    "memonaut": "0.4.0"
   },
   "peerDependencies": {
     "@earendil-works/pi-coding-agent": "*",

package/skills/memonaut/SKILL.md

@@ -107,11 +107,13 @@ recall show 2585 --from 120
 recall sql "select project, count(*) n from file group by 1 order by n desc limit 10"
 ```
 
-Add `--json` for machine-readable output. If it reports no index, the user needs to run `recall index` once.
+Add `--json` for machine-readable output. `recall status` reports how fresh the index is; `recall status --json` gives `indexedAt`, `ageMs`, `changed`, `unseen`.
+
+You do not have to keep the index fresh. Every query runs an incremental catch-up first (~120 ms warm): all three tools, and `recall search` / `recall show` / `recall sql` on the CLI. If no index exists at all, the first query builds one (~35 s, once) and tells you it did. Pass that on to the user when it happens, and otherwise do not offer to run `recall index`: it is not what makes results current.
 
 ## What is not there
 
-- **Private conversations.** The user's config lists working directories that are indexed for them but never exposed to tools. If a thread comes back as private, do not try to route around it; tell the user.
+- **Private conversations.** The user's config lists working directories that are indexed for them but never exposed to tools. This holds for `recall_sql` too: the tables it queries are filtered, so a `COUNT(*)` is a count of what you may see, and `main.file`, `ATTACH` and `chunk_fts` are refused because they would go around that filter. If a thread comes back as private, do not try to route around it; tell the user.
 - **Full tool output.** Tool results are stored truncated or not at all (they are 42% of the bytes and rarely what anyone is looking for). The discussion is indexed; the command output usually is not. For full fidelity the original transcript is still on disk, and `recall search --regex` reads it.
 - **Anything the user chose to ignore.** Ignored directories were never read at all.
 

package/src/index.ts

@@ -4,7 +4,13 @@ import type {
 	ExtensionAPI,
 	ToolDefinition,
 } from '@earendil-works/pi-coding-agent';
-import {runSearch, runSql, runThread, type ToolOutcome} from './queries.js';
+import {
+	flushIndex,
+	runSearch,
+	runSql,
+	runThread,
+	type ToolOutcome,
+} from './queries.js';
 
 /**
  * memonaut as a pi extension: three read-only tools over the transcript index.
@@ -28,6 +34,19 @@ function result(outcome: ToolOutcome) {
 }
 
 export default function extension(pi: ExtensionAPI): void {
+	// Keep the index warm at the two moments a transcript stops growing, which is
+	// what a cron job would otherwise be for. A warm catch-up is ~120 ms, it is
+	// TTL-debounced, it never builds from scratch (that would hang a quit for
+	// ~35 s) and it never throws, because the next query syncs anyway.
+	pi.on('agent_settled', () => {
+		flushIndex();
+	});
+	pi.on('session_shutdown', () => {
+		// The session file is final now, so the TTL is not worth respecting: this
+		// is the last chance to fold this conversation in before the process dies.
+		flushIndex({force: true});
+	});
+
 	pi.registerTool({
 		name: 'recall_search',
 		label: 'Recall Search',
@@ -139,8 +158,11 @@ export default function extension(pi: ExtensionAPI): void {
 			'aggregates rather than searches ("which projects did I work on in July", "how many sessions ' +
 			'mention this tool", "when did this conversation start"). Tables: file(id, path, cwd, project, ' +
 			'name, parent_id, lineage_id, private, started, last_activity, entry_count), entry(id, lineage_id, ' +
-			'entry_key, role, tool, ts), membership(entry_id, file_id, seq), chunk(entry_id, kind, text), and ' +
-			'the FTS index chunk_fts. Prefer recall_search for anything that is really a text search.',
+			'entry_key, role, tool, ts), membership(entry_id, file_id, seq), chunk(entry_id, kind, text). ' +
+			'Transcripts the user marked private are filtered out of all four, so counts here are counts of ' +
+			'what you are allowed to see. Schema-qualified names (main.file) and ATTACH are refused because ' +
+			'they would bypass that filter. Prefer recall_search for anything that is really a text search; ' +
+			'the chunk_fts index is not queryable here.',
 		promptSnippet: 'Run a read-only SQL aggregate over the conversation index',
 		promptGuidelines: [
 			'Use recall_sql for counting and grouping questions about past sessions, and recall_search for finding what was said.',

package/src/queries.ts

@@ -1,7 +1,13 @@
+import fs from 'node:fs';
+import os from 'node:os';
 import {
+	getMeta,
+	index,
 	indexStats,
 	loadConfig,
+	MissingIndexError,
 	openDb,
+	type DB,
 	readThread,
 	relativeTime,
 	resolveThread,
@@ -32,15 +38,19 @@ export interface ToolOptions {
 	maxChars?: number;
 	/** Skip the incremental catch-up if the index was synced this recently. */
 	syncTtlMs?: number;
+	/** Build the index inline when there is none. Default true. */
+	autoBuild?: boolean;
 	config?: Config;
 	now?: number;
 }
 
 const DEFAULT_MAX_CHARS = 6000;
 
-function options(
-	opts: ToolOptions,
-): Required<Pick<ToolOptions, 'maxChars' | 'syncTtlMs'>> & {config: Config} {
+function options(opts: ToolOptions): Required<
+	Pick<ToolOptions, 'maxChars' | 'syncTtlMs' | 'autoBuild'>
+> & {
+	config: Config;
+} {
 	const config = opts.config ?? loadConfig();
 	return {
 		maxChars:
@@ -48,20 +58,231 @@ function options(
 			Number(process.env.MEMONAUT_TOOL_MAX_CHARS ?? DEFAULT_MAX_CHARS),
 		syncTtlMs:
 			opts.syncTtlMs ?? Number(process.env.MEMONAUT_TOOL_SYNC_TTL_MS ?? 15_000),
+		autoBuild: opts.autoBuild ?? process.env.MEMONAUT_NO_AUTO_BUILD !== '1',
 		config,
 	};
 }
 
-function missingIndex(config: Config): ToolOutcome {
+/**
+ * An error message, with anything that identifies a transcript removed.
+ *
+ * `fs` failures quote the path they failed on, and a transcript path contains
+ * the mangled cwd, so an EACCES inside a private conversation would otherwise
+ * disclose that conversation's existence and location through a tool result.
+ * Invariant 8 is absolute, and it covers existence, not just content.
+ */
+function safeMessage(err: unknown): string {
+	const raw = String((err as Error)?.message ?? err);
+	return raw
+		.replace(/\S*\.jsonl/g, '<transcript>')
+		.split(os.homedir())
+		.join('~');
+}
+
+function missingIndex(config: Config, why?: string): ToolOutcome {
 	return {
 		isError: true,
 		text:
-			`No transcript index exists yet at ${tildify(config.dbPath)}.\n` +
-			'Tell the user to run `recall index` once (it takes well under a minute), ' +
+			`No transcript index exists yet at ${tildify(config.dbPath)}` +
+			(why ? `, and building one failed: ${why}` : '.') +
+			'\nTell the user to run `recall index` once (it takes well under a minute), ' +
 			'or run it yourself with bash if they have already agreed to that.',
 	};
 }
 
+/** The index is there but unusable: a different problem, with a different fix. */
+function unusableIndex(config: Config, why: string): ToolOutcome {
+	return {
+		isError: true,
+		text:
+			`The transcript index at ${tildify(config.dbPath)} exists but could not be opened: ${why}\n` +
+			'The index is a derived cache, so nothing is lost by rebuilding it: tell the user to run ' +
+			'`recall index --full`. Do not report this as "no past conversations".',
+	};
+}
+
+/**
+ * Open the index for reading, or explain the failure as a tool result.
+ *
+ * `ready()` only proves the file existed a moment ago. It can still be gone,
+ * truncated, or written by a newer schema by the time we open it, and an
+ * exception thrown out of `execute()` is worse for an agent than an outcome
+ * carrying instructions.
+ */
+function openIndex(
+	config: Config,
+	opts: {writableTemp?: boolean} = {},
+): DB | ToolOutcome {
+	let db: DB | undefined;
+	try {
+		db = openDb(config.dbPath, {readOnly: true, ...opts});
+		// SQLite opens lazily, so a file that is not a database at all only fails
+		// on the first real statement, which would otherwise be somewhere deep in
+		// a query. One trivial read moves that failure to where it is handled.
+		db.prepare('SELECT 1 FROM meta LIMIT 1').get();
+		return db;
+	} catch (err) {
+		db?.close();
+		return fs.existsSync(config.dbPath)
+			? unusableIndex(config, safeMessage(err))
+			: missingIndex(config);
+	}
+}
+
+/** Epoch ms of the last COMPLETED catch-up, or null if one never finished. */
+function lastIndexedAt(config: Config): number | null {
+	try {
+		const db = openDb(config.dbPath, {readOnly: true});
+		try {
+			const value = Number(getMeta(db, 'indexed_at') ?? NaN);
+			return Number.isFinite(value) ? value : null;
+		} finally {
+			db.close();
+		}
+	} catch {
+		return null;
+	}
+}
+
+/**
+ * One cold build per process, at most.
+ *
+ * A first build is ~35 s for 4,831 transcripts. Paying that inside a tool call
+ * is far better than answering "no index" and hoping somebody runs the CLI,
+ * but paying it three times in one turn because the data directory is not
+ * writable is not, so that failure is remembered rather than retried.
+ *
+ * Narrow by construction: this memo is only consulted when the DB FILE is
+ * absent, and `openDb` creates the file early, so it covers the cannot-create
+ * case and not a build that died partway. That one is retried, which is the
+ * behaviour you want anyway, since it resumes from its watermarks.
+ */
+let coldBuildFailed: string | null = null;
+
+export interface ReadinessNote {
+	/** Prefixed to the tool output when the agent should know something. */
+	note?: string;
+	details: Record<string, unknown>;
+}
+
+/**
+ * Make sure there is an index and that it is caught up, or explain why not.
+ *
+ * Three outcomes, deliberately kept apart:
+ *   - no index at all -> build it once, inline, and say so;
+ *   - index present but the catch-up failed (locked by a concurrent writer,
+ *     disk full) -> answer from what IS indexed and flag the staleness, since
+ *     a slightly old answer beats no answer;
+ *   - build failed -> the only case that is a real error.
+ */
+function ready(
+	config: Config,
+	ttlMs: number,
+	autoBuild: boolean,
+): ReadinessNote | ToolOutcome {
+	try {
+		const result = syncIfStale(config, ttlMs);
+		return {
+			details: {
+				synced: result.ran,
+				...(result.stats ? {syncedFiles: result.stats.filesIndexed} : {}),
+			},
+		};
+	} catch (err) {
+		if (!(err instanceof MissingIndexError)) {
+			// The index exists; only the catch-up failed, most often because another
+			// process holds the write lock for longer than the busy timeout.
+			//
+			// How stale it is must be READ, never assumed: a cold build that was
+			// killed leaves a file that exists, has no `indexed_at`, and may hold
+			// almost nothing. Telling an agent "missing the last few minutes" there
+			// would turn a 95%-empty index into a confident "we never discussed it".
+			const why = safeMessage(err);
+			const at = lastIndexedAt(config);
+			const how =
+				at === null
+					? 'and it has never finished a build, so it is INCOMPLETE by an unknown amount. Treat "no matches" as "unknown", not as "no", and say so'
+					: `and it was last brought up to date ${relativeTime(new Date(at).toISOString())}, so anything since then is missing`;
+			return {
+				note: `(the index could not be updated just now: ${why}, ${how}.)`,
+				details: {
+					synced: false,
+					syncError: why,
+					indexedAt: at === null ? null : new Date(at).toISOString(),
+				},
+			};
+		}
+		if (!autoBuild) return missingIndex(config);
+		if (coldBuildFailed !== null) return missingIndex(config, coldBuildFailed);
+		try {
+			const stats = index({config});
+			return {
+				note: `(no index existed, so one was built just now: ${stats.filesIndexed} conversations in ${(stats.durationMs / 1000).toFixed(1)}s. Worth telling the user, since it happens once.)`,
+				details: {
+					built: true,
+					syncedFiles: stats.filesIndexed,
+					buildMs: stats.durationMs,
+				},
+			};
+		} catch (buildErr) {
+			coldBuildFailed = safeMessage(buildErr);
+			return missingIndex(config, coldBuildFailed);
+		}
+	}
+}
+
+function isOutcome(
+	value: ReadinessNote | ToolOutcome | DB,
+): value is ToolOutcome {
+	return typeof (value as ToolOutcome).text === 'string';
+}
+
+/**
+ * How long a lifecycle flush may spend before leaving the rest to the next one.
+ * A warm catch-up is ~120 ms, so this only bites after a long gap, which is
+ * precisely when a session must not stall on its way out.
+ */
+const FLUSH_BUDGET_MS = 2_000;
+
+/**
+ * A truncated flush deliberately leaves `indexed_at` alone, which also means
+ * the 15 s TTL can never short-circuit until one run completes. Without this,
+ * an agent that is far behind pays the full budget on EVERY turn. Queries are
+ * unaffected: they sync unbudgeted and will finish the job properly.
+ */
+const TRUNCATED_FLUSH_RETRY_MS = 60_000;
+let lastTruncatedFlush = 0;
+
+/**
+ * Catch the index up outside of any query, for a caller that knows a
+ * transcript just stopped growing (a session ending, an agent going idle).
+ *
+ * Never builds: a cold build at session shutdown would hang a quit for ~35 s.
+ * Never throws: a failed flush is not worth interrupting anything for, because
+ * the next query syncs anyway.
+ * Never overruns its budget by more than one lineage: a session that has been
+ * away for a month must not stall on the way out. Whatever is left stays
+ * pending, and `indexed_at` is not advanced, so the next query still syncs.
+ */
+export function flushIndex(
+	opts: ToolOptions & {force?: boolean} = {},
+): boolean {
+	try {
+		const {config, syncTtlMs} = options(opts);
+		const now = opts.now ?? Date.now();
+		if (now - lastTruncatedFlush < TRUNCATED_FLUSH_RETRY_MS) return false;
+		const result = syncIfStale(
+			config,
+			opts.force ? 0 : syncTtlMs,
+			FLUSH_BUDGET_MS,
+		);
+		if (result.stats?.budgetExhausted) lastTruncatedFlush = now;
+		return result.ran;
+	} catch {
+		return false;
+	}
+}
+
 /** Strip FTS5 highlight markers down to something readable in a tool result. */
 function cleanSnippet(snippet: string): string {
 	return snippet
@@ -71,6 +292,11 @@ function cleanSnippet(snippet: string): string {
 		.trim();
 }
 
+/** Freshness notes go FIRST: an agent that stops reading early still sees them. */
+function withNote(text: string, note: string | undefined): string {
+	return note ? `${note}\n\n${text}` : text;
+}
+
 function truncate(lines: string[], maxChars: number, tail: string): string {
 	const out: string[] = [];
 	let used = 0;
@@ -133,15 +359,13 @@ export function runSearch(
 	params: SearchParams,
 	opts: ToolOptions = {},
 ): ToolOutcome {
-	const {config, maxChars, syncTtlMs} = options(opts);
+	const {config, maxChars, syncTtlMs, autoBuild} = options(opts);
 	const now = opts.now ?? Date.now();
-	try {
-		syncIfStale(config, syncTtlMs);
-	} catch {
-		return missingIndex(config);
-	}
-
-	const db = openDb(config.dbPath, {readOnly: true});
+	const state = ready(config, syncTtlMs, autoBuild);
+	if (isOutcome(state)) return state;
+	const opened = openIndex(config);
+	if (isOutcome(opened)) return opened;
+	const db = opened;
 	try {
 		const limit = Math.min(Math.max(params.limit ?? 8, 1), 50);
 		const outcome = search(
@@ -167,12 +391,18 @@ export function runSearch(
 
 		if (outcome.hits.length === 0) {
 			const stats = indexStats(db);
+			// The count must exclude private transcripts. They were not searched, so
+			// including them would both overstate the search AND disclose how many
+			// conversations the user is holding back.
+			const searched = Number(stats.files) - Number(stats.privateFiles ?? 0);
 			return {
-				text:
+				text: withNote(
 					`No matches for: ${outcome.usedQuery}\n` +
-					`Searched ${stats.files} conversations across ${stats.projects} projects.\n` +
-					'Try fewer words, a quoted phrase, OR between alternatives, or drop the filters.',
-				details: {hits: 0, usedQuery: outcome.usedQuery},
+						`Searched ${searched} conversations across ${stats.projects} projects.\n` +
+						'Try fewer words, a quoted phrase, OR between alternatives, or drop the filters.',
+					state.note,
+				),
+				details: {hits: 0, usedQuery: outcome.usedQuery, ...state.details},
 			};
 		}
 
@@ -188,12 +418,12 @@ export function runSearch(
 		lines.push('Use recall_thread with a thread number to read one in full.');
 
 		return {
-			text: truncate(
-				lines,
-				maxChars,
-				'Narrow with project/since or lower limit.',
+			text: withNote(
+				truncate(lines, maxChars, 'Narrow with project/since or lower limit.'),
+				state.note,
 			),
 			details: {
+				...state.details,
 				usedQuery: outcome.usedQuery,
 				quotedFallback: outcome.quotedFallback,
 				hits: outcome.hits.map((h) => ({
@@ -208,6 +438,10 @@ export function runSearch(
 				})),
 			},
 		};
+	} catch (err) {
+		// Nothing may escape `execute()`: an agent can act on an error outcome
+		// that carries instructions, and can do nothing at all with a stack trace.
+		return unusableIndex(config, safeMessage(err));
 	} finally {
 		db.close();
 	}
@@ -223,13 +457,12 @@ export function runThread(
 	params: ThreadParams,
 	opts: ToolOptions = {},
 ): ToolOutcome {
-	const {config, maxChars} = options(opts);
-	let db;
-	try {
-		db = openDb(config.dbPath, {readOnly: true});
-	} catch {
-		return missingIndex(config);
-	}
+	const {config, maxChars, syncTtlMs, autoBuild} = options(opts);
+	const state = ready(config, syncTtlMs, autoBuild);
+	if (isOutcome(state)) return state;
+	const opened = openIndex(config);
+	if (isOutcome(opened)) return opened;
+	const db = opened;
 	try {
 		const thread = resolveThread(db, String(params.ref));
 		if (!thread)
@@ -269,55 +502,150 @@ export function runThread(
 		}
 
 		return {
-			text: truncate(
-				lines,
-				maxChars,
-				`Call again with from=${from + Math.floor(limit / 2)} and a smaller limit.`,
+			text: withNote(
+				truncate(
+					lines,
+					maxChars,
+					`Call again with from=${from + Math.floor(limit / 2)} and a smaller limit.`,
+				),
+				state.note,
 			),
 			details: {
+				...state.details,
 				threadId: thread.id,
 				from,
 				count: entries.length,
 				total: thread.entry_count,
 			},
 		};
+	} catch (err) {
+		return unusableIndex(config, safeMessage(err));
 	} finally {
-		db?.close();
+		db.close();
 	}
 }
 
+/**
+ * Reasons an arbitrary query is refused before it runs.
+ *
+ * The private filter below works by SHADOWING, so anything that can dodge name
+ * resolution has to be refused: a schema qualifier reaches the real table, and
+ * ATTACH introduces a schema whose names we never shadowed. `chunk_fts` is
+ * refused because an FTS index cannot be shadowed by a view that still
+ * supports MATCH, and full-text search is what recall_search is for anyway.
+ */
+function sqlRefusal(sql: string): string | null {
+	// Comments and string literals first: they can legally contain any of this.
+	const bare = sql
+		.replace(/--[^\n]*/g, ' ')
+		.replace(/\/\*[\s\S]*?\*\//g, ' ')
+		.replace(/'[^']*'/g, "''")
+		.replace(/"([^"]*)"/g, '$1')
+		.toLowerCase();
+	if (/\battach\b/.test(bare))
+		return 'ATTACH is not allowed: only the transcript index is queryable.';
+	if (/\b(main|temp|sqlite_temp_master|sqlite_master)\s*\./.test(bare))
+		return (
+			'Schema-qualified names (main.file, temp.file) are not allowed, because they bypass ' +
+			'the filter that hides transcripts the user marked private. Use the bare table name.'
+		);
+	if (/\bchunk_fts\b/.test(bare))
+		return 'chunk_fts is not queryable here. Use recall_search for full-text search.';
+	return null;
+}
+
+/**
+ * Hide private transcripts from arbitrary SQL, by shadowing.
+ *
+ * SQLite resolves an unqualified name in the TEMP schema first, so a temp view
+ * called `file` is what `SELECT ... FROM file` finds, while the real table
+ * stays reachable only as `main.file`, which `sqlRefusal` blocks. That keeps
+ * the documented schema exactly as it was: no `_public` suffixes to teach, no
+ * query rewriting, and no cost at all when nothing is private, which is the
+ * common case.
+ *
+ * Visibility follows `visibleSets()` in core: it is decided per FILE, and an
+ * entry belongs to whoever owns it (`first_file`). An entry owned by a private
+ * transcript stays hidden even where a public fork inherited it, which errs
+ * towards hiding.
+ *
+ * Needs a connection WITHOUT `query_only`, which refuses temp writes as well;
+ * `readOnly` alone already makes the index itself unwritable.
+ *
+ * Measured on a 617k-entry index when private transcripts DO exist: a full
+ * `COUNT(*) FROM entry` goes 343 ms -> 812 ms, and `COUNT(*) FROM chunk` goes
+ * 99 ms -> 191 ms, the join being cheap because it hits `entry.id`, the
+ * primary key. Not worth an index on `entry.first_file`: that would be a
+ * schema bump, hence a full rebuild for everyone, to speed up unfiltered
+ * aggregates for the subset of users who mark anything private.
+ */
+function hidePrivate(db: DB): void {
+	const privateIds = (
+		db
+			.prepare('SELECT id FROM main.file WHERE private = 1')
+			.all() as unknown as Array<{id: number}>
+	).map((row) => Number(row.id));
+	if (privateIds.length === 0) return;
+	const ids = privateIds.join(',');
+	db.exec(`
+    CREATE TEMP VIEW file AS
+      SELECT * FROM main.file WHERE id NOT IN (${ids});
+    CREATE TEMP VIEW entry AS
+      SELECT * FROM main.entry WHERE first_file IS NULL OR first_file NOT IN (${ids});
+    CREATE TEMP VIEW membership AS
+      SELECT * FROM main.membership WHERE file_id NOT IN (${ids});
+    CREATE TEMP VIEW chunk AS
+      SELECT c.* FROM main.chunk c JOIN main.entry e ON e.id = c.entry_id
+      WHERE e.first_file IS NULL OR e.first_file NOT IN (${ids});
+  `);
+}
+
 export function runSql(sql: string, opts: ToolOptions = {}): ToolOutcome {
-	const {config, maxChars} = options(opts);
-	let db;
-	try {
-		db = openDb(config.dbPath, {readOnly: true});
-	} catch {
-		return missingIndex(config);
-	}
+	const {config, maxChars, syncTtlMs, autoBuild} = options(opts);
+	const refusal = sqlRefusal(sql);
+	if (refusal) return {isError: true, text: refusal};
+	const state = ready(config, syncTtlMs, autoBuild);
+	if (isOutcome(state)) return state;
+	const opened = openIndex(config, {writableTemp: true});
+	if (isOutcome(opened)) return opened;
+	const db = opened;
 	try {
+		hidePrivate(db);
 		const rows = db.prepare(sql).all() as unknown as Array<
 			Record<string, unknown>
 		>;
-		if (rows.length === 0) return {text: '(no rows)', details: {rows: 0}};
+		if (rows.length === 0)
+			return {
+				text: withNote('(no rows)', state.note),
+				details: {rows: 0, ...state.details},
+			};
 		const lines = rows.slice(0, 200).map((row) => JSON.stringify(row));
 		return {
-			text: truncate(
-				[`${rows.length} row(s):`, ...lines],
-				maxChars,
-				'Add a LIMIT or aggregate instead.',
+			text: withNote(
+				truncate(
+					[`${rows.length} row(s):`, ...lines],
+					maxChars,
+					'Add a LIMIT or aggregate instead.',
+				),
+				state.note,
 			),
-			details: {rows: rows.length},
+			details: {rows: rows.length, ...state.details},
 		};
 	} catch (err) {
+		// A broken index is not a broken query, and handing back a schema lecture
+		// for "file is not a database" would send the agent rewriting valid SQL.
+		const message = safeMessage(err);
+		if (/not a database|malformed|disk image|corrupt/i.test(message))
+			return unusableIndex(config, message);
 		return {
 			isError: true,
 			text:
-				`SQL failed: ${(err as Error).message}\n` +
+				`SQL failed: ${message}\n` +
 				'Tables: file(id, path, cwd, project, name, parent_id, lineage_id, private, started, last_activity, entry_count), ' +
 				'entry(id, lineage_id, entry_key, role, tool, ts), membership(entry_id, file_id, seq), chunk(entry_id, kind, text). ' +
-				'The connection is read-only.',
+				'The connection is read-only, private transcripts are filtered out, and chunk_fts is not queryable here.',
 		};
 	} finally {
-		db?.close();
+		db.close();
 	}
 }