meetsoma 0.1.6 → 0.3.1

package/CHANGELOG.md

@@ -4,6 +4,52 @@ All notable changes to Soma (`meetsoma` on npm).
 
 Format follows [Keep a Changelog](https://keepachangelog.com/). Versioning follows [Semantic Versioning](https://semver.org/).
 
+## [0.3.1] — 2026-04-10
+
+Re-release of 0.3.0 (npm doesn't allow republish of unpublished versions).
+
+## [0.3.0] — 2026-04-10
+
+Corresponds to Soma agent v0.9.0+.
+
+### Added
+- **Script discovery**: `soma <name>` routes to `soma-<name>.sh` scripts via chain (bundled → project → global)
+- `soma code`, `soma verify`, `soma refactor` work from any project with scripts installed
+- `soma --help scripts` lists all discovered scripts with descriptions
+
+### Changed
+- Extracted `lib/` and `welcome/` modules from thin-cli.js (1650→902 lines)
+- Removed stale agent copies — CLI is a pure thin wrapper now
+
+### Fixed
+- **CORE_DIR respects `SOMA_CODING_AGENT_DIR`** — thin-cli.js and cli.js no longer hardcode `~/.soma/agent`. Sandbox testing and env overrides now work correctly.
+
+## [0.2.0] — 2026-04-02
+
+Corresponds to Soma agent v0.8.0.
+
+### New
+
+- **`soma doctor`** — check project health, auto-fix stale settings/body/protocols, run migrations.
+- **`soma status` / `soma health`** — quick project health check (renamed from old `soma doctor`).
+- **`soma --version`** — shows both agent and CLI versions.
+- **`soma --help`** — delegates to core agent for full help output.
+- **`--scan` / `--all` flags** — doctor multi-project support (delegates to core).
+
+### Changed
+
+- **CLI routing overhaul** — doctor/status/health/update/version all route through thin-cli properly.
+- **Stale protocol detection** — doctor identifies outdated bundled protocols and offers to update them.
+- **Version-aware pending file** — `_doctor-pending.md` injected on boot when migration is available.
+
+### Fixed
+
+- **Help header** — shows "CLI v0.2.0" instead of bare version number.
+- **Orphaned `showStatus()`** — removed dead code from thin-cli.
+- **Placeholder text** — replaced thin-cli stubs with real output.
+
+---
+
 ## [0.1.4] — 2026-03-28
 
 Corresponds to Soma agent v0.6.5.

package/README.md

@@ -25,36 +25,83 @@ An AI coding agent that grows with you. Identity, protocols, and muscle memory
 
 Most agents forget everything between sessions. Soma doesn't.
 
-## What Happens
-
-On first run, you'll meet the personality engine — no AI, just sentence templates. It introduces Soma and lets you ask questions before committing. Press Enter to install.
+## Install
 
+```bash
+npm install -g meetsoma
 ```
-  σ
 
-  Soma — the AI agent that remembers
+This installs the Soma CLI — a thin bootstrap layer. On first run, it downloads the full agent runtime (~50MB) from GitHub.
+
+### What Happens
+
+```
+npm install -g meetsoma     ← installs CLI only (~50KB)
+soma                        ← first run: downloads agent runtime
+soma                        ← every run after: starts a session
+```
 
-  ❝ No compaction. Ever.
+**Requirements:** Node.js ≥ 20, git, an API key (Anthropic, Google, OpenAI, or [OpenRouter free tier](https://openrouter.ai)).
 
-  ──────────────────────────────────────────────────────────
+## First Run
 
-  → Enter  Install Soma
-  → ?      Ask me something first
+```bash
+cd your-project
+soma
 ```
 
-After install, run `soma` in any project. It creates `.soma/`, reads your codebase, and writes its own identity. By session two, it remembers.
+Soma detects your project (language, framework, package manager, monorepo signals), creates `.soma/`, and writes its own identity. By session two, it remembers.
 
 ## Commands
 
+### CLI (from your shell)
+
+```bash
+soma                         # fresh session
+soma inhale                  # resume from last session's preload
+soma -c                      # continue last session (full history)
+soma -r                      # pick a session to resume
+soma focus <keyword>         # prime for a topic
+soma map <name>              # boot with a workflow MAP
+
+soma doctor                  # project health + migration check
+soma status                  # infrastructure health check
+soma --version               # show agent + CLI versions
+soma --help                  # full command reference
+soma --help scripts          # list installed scripts
+soma --help commands         # all CLI + TUI commands
+```
+
+### Session (inside the TUI)
+
+```
+/exhale          save state + write preload for next session
+/breathe         save + rotate into fresh session
+/inhale          check preload status
+/rest            disable keepalive + exhale
+/pin <name>      keep a muscle/protocol hot
+/kill <name>     drop to cold
+/hub install     install from the community hub
+/soma doctor     run migration analysis
+```
+
+## Two Versions
+
+Soma has two independently-versioned layers:
+
+```
+σ  Soma v0.9.0       ← agent version (the runtime — features, protocols, templates)
+   CLI v0.2.0        ← CLI version (this npm package — install flow, delegation)
+```
+
+The **agent version** is what matters for features. The **CLI version** is the bootstrap.
+
+### Updating
+
 ```bash
-soma                     # start a session
-soma focus <keyword>     # load relevant muscles + MAPs
-soma inhale              # resume from last session
-soma --map <name>        # load a workflow
-
-soma init                # install the runtime
-soma doctor              # check health
-soma update              # check for updates
+soma init                    # update the agent runtime
+npm install -g meetsoma      # update the CLI (rare)
+soma doctor                  # check if project .soma/ needs migration
 ```
 
 ## The Five Ideas
@@ -69,11 +116,16 @@ soma update              # check for updates
 
 **Heat** — attention management. Used things stay. Unused things cool.
 
-## Requirements
+## How It Works
+
+```
+~/.soma/agent/              ← global runtime (git clone, updated via soma init)
+your-project/.soma/         ← per-project memory (identity, protocols, sessions)
+```
+
+The CLI delegates to the runtime. The runtime loads your project's `.soma/`, resolves the identity chain (project → parent → global), and boots the agent with your accumulated context.
 
-- Node.js ≥ 20.6
-- git
-- API key (Anthropic, Google, or OpenAI)
+On boot, Soma silently adds any missing settings or protocols from newer versions (Tier 1 auto-fix). Bigger migrations are handled by `/soma doctor` inside the TUI.
 
 ---
 

package/dist/bun/cli.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=cli.d.ts.map

package/dist/bun/cli.d.ts.map

@@ -0,0 +1 @@
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package/dist/bun/cli.js

@@ -0,0 +1,7 @@
+#!/usr/bin/env node
+process.title = "pi";
+process.emitWarning = (() => { });
+await import("./register-bedrock.js");
+await import("../cli.js");
+export {};
+//# sourceMappingURL=cli.js.map

package/dist/bun/cli.js.map

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package/dist/bun/register-bedrock.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=register-bedrock.d.ts.map

package/dist/bun/register-bedrock.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"register-bedrock.d.ts","sourceRoot":"","sources":["../../src/bun/register-bedrock.ts"],"names":[],"mappings":"","sourcesContent":["import { setBedrockProviderModule } from \"@mariozechner/pi-ai\";\nimport { bedrockProviderModule } from \"@mariozechner/pi-ai/bedrock-provider\";\n\nsetBedrockProviderModule(bedrockProviderModule);\n"]}

package/dist/bun/register-bedrock.js

@@ -0,0 +1,4 @@
+import { setBedrockProviderModule } from "@mariozechner/pi-ai";
+import { bedrockProviderModule } from "@mariozechner/pi-ai/bedrock-provider";
+setBedrockProviderModule(bedrockProviderModule);
+//# sourceMappingURL=register-bedrock.js.map

package/dist/bun/register-bedrock.js.map

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package/dist/cli/args.d.ts

@@ -0,0 +1,49 @@
+/**
+ * CLI argument parsing and help display
+ */
+import type { ThinkingLevel } from "@mariozechner/pi-agent-core";
+import { type ToolName } from "../core/tools/index.js";
+export type Mode = "text" | "json" | "rpc";
+export interface Args {
+    provider?: string;
+    model?: string;
+    apiKey?: string;
+    systemPrompt?: string;
+    appendSystemPrompt?: string;
+    thinking?: ThinkingLevel;
+    continue?: boolean;
+    resume?: boolean;
+    help?: boolean;
+    version?: boolean;
+    mode?: Mode;
+    noSession?: boolean;
+    session?: string;
+    fork?: string;
+    sessionDir?: string;
+    models?: string[];
+    tools?: ToolName[];
+    noTools?: boolean;
+    extensions?: string[];
+    noExtensions?: boolean;
+    print?: boolean;
+    export?: string;
+    noSkills?: boolean;
+    skills?: string[];
+    promptTemplates?: string[];
+    noPromptTemplates?: boolean;
+    themes?: string[];
+    noThemes?: boolean;
+    listModels?: string | true;
+    offline?: boolean;
+    verbose?: boolean;
+    messages: string[];
+    fileArgs: string[];
+    /** Unknown flags (potentially extension flags) - map of flag name to value */
+    unknownFlags: Map<string, boolean | string>;
+}
+export declare function isValidThinkingLevel(level: string): level is ThinkingLevel;
+export declare function parseArgs(args: string[], extensionFlags?: Map<string, {
+    type: "boolean" | "string";
+}>): Args;
+export declare function printHelp(): void;
+//# sourceMappingURL=args.d.ts.map

package/dist/cli/args.d.ts.map

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i < args.length; i++) {\n\t\tconst arg = args[i];\n\n\t\tif (arg === \"--help\" || arg === \"-h\") {\n\t\t\tresult.help = true;\n\t\t} else if (arg === \"--version\" || arg === \"-v\") {\n\t\t\tresult.version = true;\n\t\t} else if (arg === \"--mode\" && i + 1 < args.length) {\n\t\t\tconst mode = args[++i];\n\t\t\tif (mode === \"text\" || mode === \"json\" || mode === \"rpc\") {\n\t\t\t\tresult.mode = mode;\n\t\t\t}\n\t\t} else if (arg === \"--continue\" || arg === \"-c\") {\n\t\t\tresult.continue = true;\n\t\t} else if (arg === \"--resume\" || arg === \"-r\") {\n\t\t\tresult.resume = true;\n\t\t} else if (arg === \"--provider\" && i + 1 < args.length) {\n\t\t\tresult.provider = args[++i];\n\t\t} else if (arg === \"--model\" && i + 1 < args.length) {\n\t\t\tresult.model = args[++i];\n\t\t} else if (arg === \"--api-key\" && i + 1 < args.length) {\n\t\t\tresult.apiKey = args[++i];\n\t\t} else if (arg === \"--system-prompt\" && i + 1 < args.length) {\n\t\t\tresult.systemPrompt = args[++i];\n\t\t} else if (arg === \"--append-system-prompt\" && i + 1 < args.length) {\n\t\t\tresult.appendSystemPrompt = args[++i];\n\t\t} else if (arg === \"--no-session\") {\n\t\t\tresult.noSession = true;\n\t\t} else if (arg === \"--session\" && i + 1 < args.length) {\n\t\t\tresult.session = args[++i];\n\t\t} else if (arg === \"--fork\" && i + 1 < args.length) {\n\t\t\tresult.fork = args[++i];\n\t\t} else if (arg === \"--session-dir\" && i + 1 < args.length) {\n\t\t\tresult.sessionDir = args[++i];\n\t\t} else if (arg === \"--models\" && i + 1 < args.length) {\n\t\t\tresult.models = args[++i].split(\",\").map((s) => s.trim());\n\t\t} else if (arg === \"--no-tools\") {\n\t\t\tresult.noTools = true;\n\t\t} else if (arg === \"--tools\" && i + 1 < args.length) {\n\t\t\tconst toolNames = args[++i].split(\",\").map((s) => s.trim());\n\t\t\tconst validTools: ToolName[] = [];\n\t\t\tfor (const name of toolNames) {\n\t\t\t\tif (name in allTools) {\n\t\t\t\t\tvalidTools.push(name as ToolName);\n\t\t\t\t} else {\n\t\t\t\t\tconsole.error(\n\t\t\t\t\t\tchalk.yellow(`Warning: Unknown tool \"${name}\". Valid tools: ${Object.keys(allTools).join(\", \")}`),\n\t\t\t\t\t);\n\t\t\t\t}\n\t\t\t}\n\t\t\tresult.tools = validTools;\n\t\t} else if (arg === \"--thinking\" && i + 1 < args.length) {\n\t\t\tconst level = args[++i];\n\t\t\tif (isValidThinkingLevel(level)) {\n\t\t\t\tresult.thinking = level;\n\t\t\t} else {\n\t\t\t\tconsole.error(\n\t\t\t\t\tchalk.yellow(\n\t\t\t\t\t\t`Warning: Invalid thinking level \"${level}\". Valid values: ${VALID_THINKING_LEVELS.join(\", \")}`,\n\t\t\t\t\t),\n\t\t\t\t);\n\t\t\t}\n\t\t} else if (arg === \"--print\" || arg === \"-p\") {\n\t\t\tresult.print = true;\n\t\t} else if (arg === \"--export\" && i + 1 < args.length) {\n\t\t\tresult.export = args[++i];\n\t\t} else if ((arg === \"--extension\" || arg === \"-e\") && i + 1 < args.length) {\n\t\t\tresult.extensions = result.extensions ?? [];\n\t\t\tresult.extensions.push(args[++i]);\n\t\t} else if (arg === \"--no-extensions\" || arg === \"-ne\") {\n\t\t\tresult.noExtensions = true;\n\t\t} else if (arg === \"--skill\" && i + 1 < args.length) {\n\t\t\tresult.skills = result.skills ?? [];\n\t\t\tresult.skills.push(args[++i]);\n\t\t} else if (arg === \"--prompt-template\" && i + 1 < args.length) {\n\t\t\tresult.promptTemplates = result.promptTemplates ?? [];\n\t\t\tresult.promptTemplates.push(args[++i]);\n\t\t} else if (arg === \"--theme\" && i + 1 < args.length) {\n\t\t\tresult.themes = result.themes ?? [];\n\t\t\tresult.themes.push(args[++i]);\n\t\t} else if (arg === \"--no-skills\" || arg === \"-ns\") {\n\t\t\tresult.noSkills = true;\n\t\t} else if (arg === \"--no-prompt-templates\" || arg === \"-np\") {\n\t\t\tresult.noPromptTemplates = true;\n\t\t} else if (arg === \"--no-themes\") {\n\t\t\tresult.noThemes = true;\n\t\t} else if (arg === \"--list-models\") {\n\t\t\t// Check if next arg is a search pattern (not a flag or file arg)\n\t\t\tif (i + 1 < args.length && !args[i + 1].startsWith(\"-\") && !args[i + 1].startsWith(\"@\")) {\n\t\t\t\tresult.listModels = args[++i];\n\t\t\t} else {\n\t\t\t\tresult.listModels = true;\n\t\t\t}\n\t\t} else if (arg === \"--verbose\") {\n\t\t\tresult.verbose = true;\n\t\t} else if (arg === \"--offline\") {\n\t\t\tresult.offline = true;\n\t\t} else if (arg.startsWith(\"@\")) {\n\t\t\tresult.fileArgs.push(arg.slice(1)); // Remove @ prefix\n\t\t} else if (arg.startsWith(\"--\") && extensionFlags) {\n\t\t\t// Check if it's an extension-registered flag\n\t\t\tconst flagName = arg.slice(2);\n\t\t\tconst extFlag = extensionFlags.get(flagName);\n\t\t\tif (extFlag) {\n\t\t\t\tif (extFlag.type === \"boolean\") {\n\t\t\t\t\tresult.unknownFlags.set(flagName, true);\n\t\t\t\t} else if (extFlag.type === \"string\" && i + 1 < args.length) {\n\t\t\t\t\tresult.unknownFlags.set(flagName, args[++i]);\n\t\t\t\t}\n\t\t\t}\n\t\t\t// Unknown flags without extensionFlags are silently ignored (first pass)\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tresult.messages.push(arg);\n\t\t}\n\t}\n\n\treturn result;\n}\n\nexport function printHelp(): void {\n\tconsole.log(`${chalk.bold(APP_NAME)} - AI coding assistant with read, bash, edit, write tools\n\n${chalk.bold(\"Usage:\")}\n  ${APP_NAME} [options] [@files...] [messages...]\n\n${chalk.bold(\"Commands:\")}\n  ${APP_NAME} install <source> [-l]     Install extension source and add to settings\n  ${APP_NAME} remove <source> [-l]      Remove extension source from settings\n  ${APP_NAME} uninstall <source> [-l]   Alias for remove\n  ${APP_NAME} update [source]           Update installed extensions (skips pinned sources)\n  ${APP_NAME} list                      List installed extensions from settings\n  ${APP_NAME} config                    Open TUI to enable/disable package resources\n  ${APP_NAME} <command> --help          Show help for install/remove/uninstall/update/list\n\n${chalk.bold(\"Options:\")}\n  --provider <name>              Provider name (default: google)\n  --model <pattern>              Model pattern or ID (supports \"provider/id\" and optional \":<thinking>\")\n  --api-key <key>                API key (defaults to env vars)\n  --system-prompt <text>         System prompt (default: coding assistant prompt)\n  --append-system-prompt <text>  Append text or file contents to the system prompt\n  --mode <mode>                  Output mode: text (default), json, or rpc\n  --print, -p                    Non-interactive mode: process prompt and exit\n  --continue, -c                 Continue previous session\n  --resume, -r                   Select a session to resume\n  --session <path>               Use specific session file\n  --fork <path>                  Fork specific session file or partial UUID into a new session\n  --session-dir <dir>            Directory for session storage and lookup\n  --no-session                   Don't save session (ephemeral)\n  --models <patterns>            Comma-separated model patterns for Ctrl+P cycling\n                                 Supports globs (anthropic/*, *sonnet*) and fuzzy matching\n  --no-tools                     Disable all built-in tools\n  --tools <tools>                Comma-separated list of tools to enable (default: read,bash,edit,write)\n                                 Available: read, bash, edit, write, grep, find, ls\n  --thinking <level>             Set thinking level: off, minimal, low, medium, high, xhigh\n  --extension, -e <path>         Load an extension file (can be used multiple times)\n  --no-extensions, -ne           Disable extension discovery (explicit -e paths still work)\n  --skill <path>                 Load a skill file or directory (can be used multiple times)\n  --no-skills, -ns               Disable skills discovery and loading\n  --prompt-template <path>       Load a prompt template file or directory (can be used multiple times)\n  --no-prompt-templates, -np     Disable prompt template discovery and loading\n  --theme <path>                 Load a theme file or directory (can be used multiple times)\n  --no-themes                    Disable theme discovery and loading\n  --export <file>                Export session file to HTML and exit\n  --list-models [search]         List available models (with optional fuzzy search)\n  --verbose                      Force verbose startup (overrides quietStartup setting)\n  --offline                      Disable startup network operations (same as PI_OFFLINE=1)\n  --help, -h                     Show this help\n  --version, -v                  Show version number\n\nExtensions can register additional flags (e.g., --plan from plan-mode extension).\n\n${chalk.bold(\"Examples:\")}\n  # Interactive mode\n  ${APP_NAME}\n\n  # Interactive mode with initial prompt\n  ${APP_NAME} \"List all .ts files in src/\"\n\n  # Include files in initial message\n  ${APP_NAME} @prompt.md @image.png \"What color is the sky?\"\n\n  # Non-interactive mode (process and exit)\n  ${APP_NAME} -p \"List all .ts files in src/\"\n\n  # Multiple messages (interactive)\n  ${APP_NAME} \"Read package.json\" \"What dependencies do we have?\"\n\n  # Continue previous session\n  ${APP_NAME} --continue \"What did we discuss?\"\n\n  # Use different model\n  ${APP_NAME} --provider openai --model gpt-4o-mini \"Help me refactor this code\"\n\n  # Use model with provider prefix (no --provider needed)\n  ${APP_NAME} --model openai/gpt-4o \"Help me refactor this code\"\n\n  # Use model with thinking level shorthand\n  ${APP_NAME} --model sonnet:high \"Solve this complex problem\"\n\n  # Limit model cycling to specific models\n  ${APP_NAME} --models claude-sonnet,claude-haiku,gpt-4o\n\n  # Limit to a specific provider with glob pattern\n  ${APP_NAME} --models \"github-copilot/*\"\n\n  # Cycle models with fixed thinking levels\n  ${APP_NAME} --models sonnet:high,haiku:low\n\n  # Start with a specific thinking level\n  ${APP_NAME} --thinking high \"Solve this complex problem\"\n\n  # Read-only mode (no file modifications possible)\n  ${APP_NAME} --tools read,grep,find,ls -p \"Review the code in src/\"\n\n  # Export a session file to HTML\n  ${APP_NAME} --export ~/${CONFIG_DIR_NAME}/agent/sessions/--path--/session.jsonl\n  ${APP_NAME} --export session.jsonl output.html\n\n${chalk.bold(\"Environment Variables:\")}\n  ANTHROPIC_API_KEY                - Anthropic Claude API key\n  ANTHROPIC_OAUTH_TOKEN            - Anthropic OAuth token (alternative to API key)\n  OPENAI_API_KEY                   - OpenAI GPT API key\n  AZURE_OPENAI_API_KEY             - Azure OpenAI API key\n  AZURE_OPENAI_BASE_URL            - Azure OpenAI base URL (https://{resource}.openai.azure.com/openai/v1)\n  AZURE_OPENAI_RESOURCE_NAME       - Azure OpenAI resource name (alternative to base URL)\n  AZURE_OPENAI_API_VERSION         - Azure OpenAI API version (default: v1)\n  AZURE_OPENAI_DEPLOYMENT_NAME_MAP - Azure OpenAI model=deployment map (comma-separated)\n  GEMINI_API_KEY                   - Google Gemini API key\n  GROQ_API_KEY                     - Groq API key\n  CEREBRAS_API_KEY                 - Cerebras API key\n  XAI_API_KEY                      - xAI Grok API key\n  OPENROUTER_API_KEY               - OpenRouter API key\n  AI_GATEWAY_API_KEY               - Vercel AI Gateway API key\n  ZAI_API_KEY                      - ZAI API key\n  MISTRAL_API_KEY                  - Mistral API key\n  MINIMAX_API_KEY                  - MiniMax API key\n  OPENCODE_API_KEY                 - OpenCode Zen/OpenCode Go API key\n  KIMI_API_KEY                     - Kimi For Coding API key\n  AWS_PROFILE                      - AWS profile for Amazon Bedrock\n  AWS_ACCESS_KEY_ID                - AWS access key for Amazon Bedrock\n  AWS_SECRET_ACCESS_KEY            - AWS secret key for Amazon Bedrock\n  AWS_BEARER_TOKEN_BEDROCK         - Bedrock API key (bearer token)\n  AWS_REGION                       - AWS region for Amazon Bedrock (e.g., us-east-1)\n  ${ENV_AGENT_DIR.padEnd(32)} - Session storage directory (default: ~/${CONFIG_DIR_NAME}/agent)\n  PI_PACKAGE_DIR                   - Override package directory (for Nix/Guix store paths)\n  PI_OFFLINE                       - Disable startup network operations when set to 1/true/yes\n  PI_SHARE_VIEWER_URL              - Base URL for /share command (default: https://pi.dev/session/)\n  PI_AI_ANTIGRAVITY_VERSION        - Override Antigravity User-Agent version (e.g., 1.23.0)\n\n${chalk.bold(\"Available Tools (default: read, bash, edit, write):\")}\n  read   - Read file contents\n  bash   - Execute bash commands\n  edit   - Edit files with find/replace\n  write  - Write files (creates/overwrites)\n  grep   - Search file contents (read-only, off by default)\n  find   - Find files by glob pattern (read-only, off by default)\n  ls     - List directory contents (read-only, off by default)\n`);\n}\n"]}

package/dist/cli/args.js

@@ -0,0 +1,304 @@
+/**
+ * CLI argument parsing and help display
+ */
+import chalk from "chalk";
+import { APP_NAME, CONFIG_DIR_NAME, ENV_AGENT_DIR } from "../config.js";
+import { allTools } from "../core/tools/index.js";
+const VALID_THINKING_LEVELS = ["off", "minimal", "low", "medium", "high", "xhigh"];
+export function isValidThinkingLevel(level) {
+    return VALID_THINKING_LEVELS.includes(level);
+}
+export function parseArgs(args, extensionFlags) {
+    const result = {
+        messages: [],
+        fileArgs: [],
+        unknownFlags: new Map(),
+    };
+    for (let i = 0; i < args.length; i++) {
+        const arg = args[i];
+        if (arg === "--help" || arg === "-h") {
+            result.help = true;
+        }
+        else if (arg === "--version" || arg === "-v") {
+            result.version = true;
+        }
+        else if (arg === "--mode" && i + 1 < args.length) {
+            const mode = args[++i];
+            if (mode === "text" || mode === "json" || mode === "rpc") {
+                result.mode = mode;
+            }
+        }
+        else if (arg === "--continue" || arg === "-c") {
+            result.continue = true;
+        }
+        else if (arg === "--resume" || arg === "-r") {
+            result.resume = true;
+        }
+        else if (arg === "--provider" && i + 1 < args.length) {
+            result.provider = args[++i];
+        }
+        else if (arg === "--model" && i + 1 < args.length) {
+            result.model = args[++i];
+        }
+        else if (arg === "--api-key" && i + 1 < args.length) {
+            result.apiKey = args[++i];
+        }
+        else if (arg === "--system-prompt" && i + 1 < args.length) {
+            result.systemPrompt = args[++i];
+        }
+        else if (arg === "--append-system-prompt" && i + 1 < args.length) {
+            result.appendSystemPrompt = args[++i];
+        }
+        else if (arg === "--no-session") {
+            result.noSession = true;
+        }
+        else if (arg === "--session" && i + 1 < args.length) {
+            result.session = args[++i];
+        }
+        else if (arg === "--fork" && i + 1 < args.length) {
+            result.fork = args[++i];
+        }
+        else if (arg === "--session-dir" && i + 1 < args.length) {
+            result.sessionDir = args[++i];
+        }
+        else if (arg === "--models" && i + 1 < args.length) {
+            result.models = args[++i].split(",").map((s) => s.trim());
+        }
+        else if (arg === "--no-tools") {
+            result.noTools = true;
+        }
+        else if (arg === "--tools" && i + 1 < args.length) {
+            const toolNames = args[++i].split(",").map((s) => s.trim());
+            const validTools = [];
+            for (const name of toolNames) {
+                if (name in allTools) {
+                    validTools.push(name);
+                }
+                else {
+                    console.error(chalk.yellow(`Warning: Unknown tool "${name}". Valid tools: ${Object.keys(allTools).join(", ")}`));
+                }
+            }
+            result.tools = validTools;
+        }
+        else if (arg === "--thinking" && i + 1 < args.length) {
+            const level = args[++i];
+            if (isValidThinkingLevel(level)) {
+                result.thinking = level;
+            }
+            else {
+                console.error(chalk.yellow(`Warning: Invalid thinking level "${level}". Valid values: ${VALID_THINKING_LEVELS.join(", ")}`));
+            }
+        }
+        else if (arg === "--print" || arg === "-p") {
+            result.print = true;
+        }
+        else if (arg === "--export" && i + 1 < args.length) {
+            result.export = args[++i];
+        }
+        else if ((arg === "--extension" || arg === "-e") && i + 1 < args.length) {
+            result.extensions = result.extensions ?? [];
+            result.extensions.push(args[++i]);
+        }
+        else if (arg === "--no-extensions" || arg === "-ne") {
+            result.noExtensions = true;
+        }
+        else if (arg === "--skill" && i + 1 < args.length) {
+            result.skills = result.skills ?? [];
+            result.skills.push(args[++i]);
+        }
+        else if (arg === "--prompt-template" && i + 1 < args.length) {
+            result.promptTemplates = result.promptTemplates ?? [];
+            result.promptTemplates.push(args[++i]);
+        }
+        else if (arg === "--theme" && i + 1 < args.length) {
+            result.themes = result.themes ?? [];
+            result.themes.push(args[++i]);
+        }
+        else if (arg === "--no-skills" || arg === "-ns") {
+            result.noSkills = true;
+        }
+        else if (arg === "--no-prompt-templates" || arg === "-np") {
+            result.noPromptTemplates = true;
+        }
+        else if (arg === "--no-themes") {
+            result.noThemes = true;
+        }
+        else if (arg === "--list-models") {
+            // Check if next arg is a search pattern (not a flag or file arg)
+            if (i + 1 < args.length && !args[i + 1].startsWith("-") && !args[i + 1].startsWith("@")) {
+                result.listModels = args[++i];
+            }
+            else {
+                result.listModels = true;
+            }
+        }
+        else if (arg === "--verbose") {
+            result.verbose = true;
+        }
+        else if (arg === "--offline") {
+            result.offline = true;
+        }
+        else if (arg.startsWith("@")) {
+            result.fileArgs.push(arg.slice(1)); // Remove @ prefix
+        }
+        else if (arg.startsWith("--") && extensionFlags) {
+            // Check if it's an extension-registered flag
+            const flagName = arg.slice(2);
+            const extFlag = extensionFlags.get(flagName);
+            if (extFlag) {
+                if (extFlag.type === "boolean") {
+                    result.unknownFlags.set(flagName, true);
+                }
+                else if (extFlag.type === "string" && i + 1 < args.length) {
+                    result.unknownFlags.set(flagName, args[++i]);
+                }
+            }
+            // Unknown flags without extensionFlags are silently ignored (first pass)
+        }
+        else if (!arg.startsWith("-")) {
+            result.messages.push(arg);
+        }
+    }
+    return result;
+}
+export function printHelp() {
+    console.log(`${chalk.bold(APP_NAME)} - AI coding assistant with read, bash, edit, write tools
+
+${chalk.bold("Usage:")}
+  ${APP_NAME} [options] [@files...] [messages...]
+
+${chalk.bold("Commands:")}
+  ${APP_NAME} install <source> [-l]     Install extension source and add to settings
+  ${APP_NAME} remove <source> [-l]      Remove extension source from settings
+  ${APP_NAME} uninstall <source> [-l]   Alias for remove
+  ${APP_NAME} update [source]           Update installed extensions (skips pinned sources)
+  ${APP_NAME} list                      List installed extensions from settings
+  ${APP_NAME} config                    Open TUI to enable/disable package resources
+  ${APP_NAME} <command> --help          Show help for install/remove/uninstall/update/list
+
+${chalk.bold("Options:")}
+  --provider <name>              Provider name (default: google)
+  --model <pattern>              Model pattern or ID (supports "provider/id" and optional ":<thinking>")
+  --api-key <key>                API key (defaults to env vars)
+  --system-prompt <text>         System prompt (default: coding assistant prompt)
+  --append-system-prompt <text>  Append text or file contents to the system prompt
+  --mode <mode>                  Output mode: text (default), json, or rpc
+  --print, -p                    Non-interactive mode: process prompt and exit
+  --continue, -c                 Continue previous session
+  --resume, -r                   Select a session to resume
+  --session <path>               Use specific session file
+  --fork <path>                  Fork specific session file or partial UUID into a new session
+  --session-dir <dir>            Directory for session storage and lookup
+  --no-session                   Don't save session (ephemeral)
+  --models <patterns>            Comma-separated model patterns for Ctrl+P cycling
+                                 Supports globs (anthropic/*, *sonnet*) and fuzzy matching
+  --no-tools                     Disable all built-in tools
+  --tools <tools>                Comma-separated list of tools to enable (default: read,bash,edit,write)
+                                 Available: read, bash, edit, write, grep, find, ls
+  --thinking <level>             Set thinking level: off, minimal, low, medium, high, xhigh
+  --extension, -e <path>         Load an extension file (can be used multiple times)
+  --no-extensions, -ne           Disable extension discovery (explicit -e paths still work)
+  --skill <path>                 Load a skill file or directory (can be used multiple times)
+  --no-skills, -ns               Disable skills discovery and loading
+  --prompt-template <path>       Load a prompt template file or directory (can be used multiple times)
+  --no-prompt-templates, -np     Disable prompt template discovery and loading
+  --theme <path>                 Load a theme file or directory (can be used multiple times)
+  --no-themes                    Disable theme discovery and loading
+  --export <file>                Export session file to HTML and exit
+  --list-models [search]         List available models (with optional fuzzy search)
+  --verbose                      Force verbose startup (overrides quietStartup setting)
+  --offline                      Disable startup network operations (same as PI_OFFLINE=1)
+  --help, -h                     Show this help
+  --version, -v                  Show version number
+
+Extensions can register additional flags (e.g., --plan from plan-mode extension).
+
+${chalk.bold("Examples:")}
+  # Interactive mode
+  ${APP_NAME}
+
+  # Interactive mode with initial prompt
+  ${APP_NAME} "List all .ts files in src/"
+
+  # Include files in initial message
+  ${APP_NAME} @prompt.md @image.png "What color is the sky?"
+
+  # Non-interactive mode (process and exit)
+  ${APP_NAME} -p "List all .ts files in src/"
+
+  # Multiple messages (interactive)
+  ${APP_NAME} "Read package.json" "What dependencies do we have?"
+
+  # Continue previous session
+  ${APP_NAME} --continue "What did we discuss?"
+
+  # Use different model
+  ${APP_NAME} --provider openai --model gpt-4o-mini "Help me refactor this code"
+
+  # Use model with provider prefix (no --provider needed)
+  ${APP_NAME} --model openai/gpt-4o "Help me refactor this code"
+
+  # Use model with thinking level shorthand
+  ${APP_NAME} --model sonnet:high "Solve this complex problem"
+
+  # Limit model cycling to specific models
+  ${APP_NAME} --models claude-sonnet,claude-haiku,gpt-4o
+
+  # Limit to a specific provider with glob pattern
+  ${APP_NAME} --models "github-copilot/*"
+
+  # Cycle models with fixed thinking levels
+  ${APP_NAME} --models sonnet:high,haiku:low
+
+  # Start with a specific thinking level
+  ${APP_NAME} --thinking high "Solve this complex problem"
+
+  # Read-only mode (no file modifications possible)
+  ${APP_NAME} --tools read,grep,find,ls -p "Review the code in src/"
+
+  # Export a session file to HTML
+  ${APP_NAME} --export ~/${CONFIG_DIR_NAME}/agent/sessions/--path--/session.jsonl
+  ${APP_NAME} --export session.jsonl output.html
+
+${chalk.bold("Environment Variables:")}
+  ANTHROPIC_API_KEY                - Anthropic Claude API key
+  ANTHROPIC_OAUTH_TOKEN            - Anthropic OAuth token (alternative to API key)
+  OPENAI_API_KEY                   - OpenAI GPT API key
+  AZURE_OPENAI_API_KEY             - Azure OpenAI API key
+  AZURE_OPENAI_BASE_URL            - Azure OpenAI base URL (https://{resource}.openai.azure.com/openai/v1)
+  AZURE_OPENAI_RESOURCE_NAME       - Azure OpenAI resource name (alternative to base URL)
+  AZURE_OPENAI_API_VERSION         - Azure OpenAI API version (default: v1)
+  AZURE_OPENAI_DEPLOYMENT_NAME_MAP - Azure OpenAI model=deployment map (comma-separated)
+  GEMINI_API_KEY                   - Google Gemini API key
+  GROQ_API_KEY                     - Groq API key
+  CEREBRAS_API_KEY                 - Cerebras API key
+  XAI_API_KEY                      - xAI Grok API key
+  OPENROUTER_API_KEY               - OpenRouter API key
+  AI_GATEWAY_API_KEY               - Vercel AI Gateway API key
+  ZAI_API_KEY                      - ZAI API key
+  MISTRAL_API_KEY                  - Mistral API key
+  MINIMAX_API_KEY                  - MiniMax API key
+  OPENCODE_API_KEY                 - OpenCode Zen/OpenCode Go API key
+  KIMI_API_KEY                     - Kimi For Coding API key
+  AWS_PROFILE                      - AWS profile for Amazon Bedrock
+  AWS_ACCESS_KEY_ID                - AWS access key for Amazon Bedrock
+  AWS_SECRET_ACCESS_KEY            - AWS secret key for Amazon Bedrock
+  AWS_BEARER_TOKEN_BEDROCK         - Bedrock API key (bearer token)
+  AWS_REGION                       - AWS region for Amazon Bedrock (e.g., us-east-1)
+  ${ENV_AGENT_DIR.padEnd(32)} - Session storage directory (default: ~/${CONFIG_DIR_NAME}/agent)
+  PI_PACKAGE_DIR                   - Override package directory (for Nix/Guix store paths)
+  PI_OFFLINE                       - Disable startup network operations when set to 1/true/yes
+  PI_SHARE_VIEWER_URL              - Base URL for /share command (default: https://pi.dev/session/)
+  PI_AI_ANTIGRAVITY_VERSION        - Override Antigravity User-Agent version (e.g., 1.23.0)
+
+${chalk.bold("Available Tools (default: read, bash, edit, write):")}
+  read   - Read file contents
+  bash   - Execute bash commands
+  edit   - Edit files with find/replace
+  write  - Write files (creates/overwrites)
+  grep   - Search file contents (read-only, off by default)
+  find   - Find files by glob pattern (read-only, off by default)
+  ls     - List directory contents (read-only, off by default)
+`);
+}
+//# sourceMappingURL=args.js.map