npm - mcp-rag-memory - Versions diffs - 2.5.0 → 2.6.0 - Mend

mcp-rag-memory 2.5.0 → 2.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (24) hide show

package/dist/db/database.d.ts.map +1 -1
package/dist/db/database.js +43 -11
package/dist/db/database.js.map +1 -1
package/dist/memory/memory.d.ts.map +1 -1
package/dist/memory/memory.js +130 -62
package/dist/memory/memory.js.map +1 -1
package/dist/rag/chunker.d.ts +7 -0
package/dist/rag/chunker.d.ts.map +1 -1
package/dist/rag/chunker.js +24 -0
package/dist/rag/chunker.js.map +1 -1
package/dist/rag/embeddings.d.ts.map +1 -1
package/dist/rag/embeddings.js +9 -0
package/dist/rag/embeddings.js.map +1 -1
package/dist/rag/pipeline.d.ts +2 -0
package/dist/rag/pipeline.d.ts.map +1 -1
package/dist/rag/pipeline.js +94 -12
package/dist/rag/pipeline.js.map +1 -1
package/dist/rag/vector-search.d.ts.map +1 -1
package/dist/rag/vector-search.js +10 -6
package/dist/rag/vector-search.js.map +1 -1
package/dist/session/transcript.d.ts.map +1 -1
package/dist/session/transcript.js +23 -3
package/dist/session/transcript.js.map +1 -1
package/package.json +1 -1

package/dist/db/database.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"database.d.ts","sourceRoot":"","sources":["../../src/db/database.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAK3C,eAAO,MAAM,WAAW,QAEoB,CAAC;AAE7C,eAAO,MAAM,OAAO,QAAuC,CAAC;AAU5D,wBAAgB,KAAK,IAAI,YAAY,CA0BpC;AA+GD,4DAA4D;AAC5D,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAEnD;AAED,wBAAgB,KAAK,IAAI,MAAM,CAE9B;AAED,uEAAuE;AACvE,wBAAgB,UAAU,CAAC,CAAC,EAAE,YAAY,GAAG,UAAU,CAEtD;AAED,wFAAwF;AACxF,wBAAgB,YAAY,CAAC,IAAI,EAAE,UAAU,GAAG,IAAI,GAAG,YAAY,GAAG,IAAI,CAGzE;AAED,wBAAgB,KAAK,IAAI,MAAM,CAE9B;AAED,wBAAgB,OAAO,SAItB;AASD,wBAAgB,WAAW,IAAI,MAAM,CAWpC;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,QAStD;AAED;;;GAGG;AACH,wBAAgB,SAAS,CAAC,GAAG,EAAE,YAAY,EAAE,KAAK,EAAE,MAAM,GAAG,IAAI,CAwBhE;AAED,wBAAgB,aAAa,IAAI,MAAM,CAKtC"}

package/dist/db/database.js CHANGED Viewed

@@ -17,19 +17,36 @@ export function getDB() {
         return _db;
     ensureDir();
     const db = new DatabaseSync(DB_PATH);
-    db.exec("PRAGMA journal_mode = WAL;");
-    db.exec("PRAGMA synchronous = NORMAL;");
-    db.exec("PRAGMA foreign_keys = ON;");
-    // Wait up to 5s for a concurrent writer (CLI + MCP server + auto-save plugin
-    // all share the same store) instead of failing with SQLITE_BUSY immediately.
-    db.exec("PRAGMA busy_timeout = 5000;");
-    // Migrate BEFORE caching the handle: a failed migration must surface and be
-    // retried on the next call, never leave a half-migrated connection cached.
-    migrate(db);
+    try {
+        // busy_timeout first: every later statement should inherit it.
+        db.exec("PRAGMA busy_timeout = 5000;");
+        db.exec("PRAGMA journal_mode = WAL;");
+        db.exec("PRAGMA synchronous = NORMAL;");
+        db.exec("PRAGMA foreign_keys = ON;");
+        // Migrate BEFORE caching the handle: a failed migration must surface and be
+        // retried on the next call, never leave a half-migrated connection cached.
+        migrate(db);
+    }
+    catch (e) {
+        // The handle is NOT cached on failure, so without this close every failed
+        // init leaked a file handle — reachable whenever a concurrent writer holds
+        // the lock, and it blocked later cleanup of the store directory on Windows.
+        try {
+            db.close();
+        }
+        catch {
+            /* already closed */
+        }
+        throw e;
+    }
     _db = db;
     return db;
 }
 function columnExists(db, table, column) {
+    // PRAGMA cannot take a bound parameter, so the identifier is interpolated.
+    // Only ever called with literals; assert it so a future caller cannot inject.
+    if (!/^[A-Za-z_][A-Za-z0-9_]*$/.test(table))
+        throw new Error(`Unsafe table name: ${table}`);
     const cols = db.prepare(`PRAGMA table_info(${table})`).all();
     return cols.some((c) => c.name === column);
 }
@@ -76,6 +93,9 @@ function createSchema(db) {
     );
     CREATE INDEX IF NOT EXISTS idx_chunks_doc_id ON chunks(doc_id);
     CREATE INDEX IF NOT EXISTS idx_documents_updated ON documents(updated_at DESC);
+    -- Filtered searches resolve doc ids via source/doc_id first; without this
+    -- every rag_search(source=...) scanned the whole documents table.
+    CREATE INDEX IF NOT EXISTS idx_documents_source ON documents(source);
     CREATE TABLE IF NOT EXISTS memories (
       id           TEXT PRIMARY KEY,
@@ -112,7 +132,7 @@ function createSchema(db) {
         .get();
     if (ftsRow) {
         // Existing store built with 'unicode61' — recreate with trigram and backfill.
-        if (!ftsRow.sql.includes("trigram"))
+        if (!(ftsRow.sql ?? "").includes("trigram"))
             rebuildFts(db);
     }
     else {
@@ -161,7 +181,10 @@ let cachedDim = null;
 export function getEmbedDim() {
     if (cachedDim === null) {
         const r = getDB().prepare("SELECT value FROM meta WHERE key = 'embed_dim'").get();
-        cachedDim = r ? Number(r.value) : 0;
+        const n = Number(r?.value);
+        // A corrupt row must not cache NaN: it would wedge this process with a
+        // misleading "dimension mismatch" until restart.
+        cachedDim = Number.isInteger(n) && n > 0 ? n : 0;
     }
     return cachedDim;
 }
@@ -186,6 +209,15 @@ export function ensureDim(vec, model) {
             `new vectors are ${vec.length} (model: ${model}). ` +
             `Use a consistent EMBEDDING_PROVIDER or wipe ${STORAGE_DIR}.`);
     }
+    // Same-dimension model swaps are the dangerous case: blending two vector
+    // spaces degrades search to noise with no error anywhere, and the only clue
+    // was a stale model name inside a dimension-mismatch message that never fired.
+    const currentModel = getEmbedModel();
+    if (currentModel && currentModel !== model) {
+        throw new Error(`Embedding model mismatch: DB stores ${currentModel}, requested ${model} (both ${current}-dim). ` +
+            `Point RAG_DB_DIR at a fresh store or re-ingest with a consistent EMBEDDING_MODEL. ` +
+            `Current store: ${STORAGE_DIR}.`);
+    }
 }
 export function getEmbedModel() {
     const r = getDB().prepare("SELECT value FROM meta WHERE key = 'embed_model'").get();

package/dist/db/database.js.map CHANGED Viewed

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1	+ 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package/dist/memory/memory.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/memory/memory.js CHANGED Viewed

@@ -1,6 +1,6 @@
 import { getDB, newId, nowMs, packVector, unpackVector } from "../db/database.js";
 import { dotProduct } from "../rag/embedder.js";
-import { estimateTokens } from "../rag/chunker.js";
+import { estimateTokensFromChars } from "../rag/chunker.js";
 import { embedText } from "../rag/embeddings.js";
 import { vectorSearch, invalidateVectorCache } from "../rag/vector-search.js";
 export const MEMORY_TYPES = [
@@ -22,13 +22,15 @@ function numEnv(name, fallback, valid) {
     return Number.isFinite(n) && valid(n) ? n : fallback;
 }
 export async function remember(input) {
-    const db = getDB();
     const id = newId();
     const ts = nowMs();
     const type = input.type ?? "fact";
     const importance = clampImportance(input.importance ?? 0.5);
     const tags = JSON.stringify(input.tags ?? []);
     const vec = await embedText(input.content);
+    // Re-acquire after the await: nothing below should use a handle captured
+    // before a yield point, where closeDB() could have invalidated it.
+    const db = getDB();
     db.prepare(`INSERT INTO memories (id, type, content, importance, embedding, tags, recall_count, last_recalled, created_at, updated_at)
      VALUES (?, ?, ?, ?, ?, ?, 0, NULL, ?, ?)`).run(id, type, input.content, importance, packVector(vec), tags, ts, ts);
     invalidateVectorCache();
@@ -37,11 +39,12 @@ export async function remember(input) {
         throw new Error("Memory insert failed: row disappeared immediately after write");
     return rec;
 }
+const MEMORY_TYPE_SET = new Set(MEMORY_TYPES);
 /** One query for the whole page — getMemory() per row used to be an N+1. */
 function toRecords(rows) {
     return rows.map((row) => ({
         id: row.id,
-        type: row.type,
+        type: MEMORY_TYPE_SET.has(row.type) ? row.type : "fact",
         content: row.content,
         importance: typeof row.importance === "number" && Number.isFinite(row.importance) ? row.importance : 0.5,
         tags: parseTags(row.tags),
@@ -80,7 +83,13 @@ export async function recall(query, topK = 8, minScore = 0.1) {
             continue;
         const ageMs = ts - (rec.lastRecalled ?? rec.createdAt);
         const decay = Math.pow(0.5, ageMs / (DECAY_HALF_LIFE_DAYS * 86_400_000));
-        scored.push({ ...rec, score: h.score * decay, decay });
+        // min_score gates the raw cosine inside vectorSearch; decay shrinks the
+        // score afterwards, so a stale-but-perfect match could come back at ~0.
+        // Re-apply the floor to the score the caller actually receives.
+        const score = h.score * decay;
+        if (score < minScore)
+            continue;
+        scored.push({ ...rec, score, decay });
     }
     scored.sort((a, b) => b.score - a.score);
     const results = scored.slice(0, topK);
@@ -110,9 +119,14 @@ export function listMemories(opts = {}) {
         params.push(opts.minImportance);
     }
     const where = clauses.length ? ` WHERE ${clauses.join(" AND ")}` : "";
-    const limit = Math.min(Math.max(Math.trunc(opts.limit ?? 100), 1), 500);
+    const rawLimit = opts.limit;
+    const limit = rawLimit === undefined || !Number.isFinite(rawLimit)
+        ? 100
+        : Math.min(Math.max(Math.trunc(rawLimit), 1), 500);
+    // id as tiebreaker: updated_at is millisecond-resolution, so a bulk write
+    // leaves large tie groups and LIMIT would pick an arbitrary subset.
     const rows = db
-        .prepare(`SELECT ${MEMORY_COLUMNS} FROM memories${where} ORDER BY updated_at DESC LIMIT ${limit}`)
+        .prepare(`SELECT ${MEMORY_COLUMNS} FROM memories${where} ORDER BY updated_at DESC, id DESC LIMIT ${limit}`)
         .all(...params);
     return toRecords(rows);
 }
@@ -126,35 +140,60 @@ export function getMemory(id) {
     return toRecords([row])[0];
 }
 export async function updateMemory(id, patch) {
-    const db = getDB();
     const existing = getMemory(id);
     if (!existing)
         return null;
-    const content = patch.content ?? existing.content;
-    const type = patch.type ?? existing.type;
-    const importance = patch.importance !== undefined ? clampImportance(patch.importance) : existing.importance;
-    const tags = patch.tags ?? existing.tags;
-    const ts = nowMs();
-    // Only re-embed when the text actually changed: the vector is the only column
-    // that needs the model, and an importance-only patch must stay cheap.
-    if (content !== existing.content) {
-        const vec = await embedText(content);
-        db.prepare("UPDATE memories SET content = ?, type = ?, importance = ?, tags = ?, embedding = ?, updated_at = ? WHERE id = ?").run(content, type, importance, JSON.stringify(tags), packVector(vec), ts, id);
-        invalidateVectorCache();
+    // Build the SET list from the patch only. Rewriting every column from a
+    // pre-read snapshot made this a lost-update: two concurrent patches (CLI +
+    // server, or two sessions) each wrote back the other's stale values.
+    const sets = [];
+    const params = [];
+    if (patch.content !== undefined) {
+        sets.push("content = ?");
+        params.push(patch.content);
+    }
+    if (patch.type !== undefined) {
+        sets.push("type = ?");
+        params.push(patch.type);
+    }
+    if (patch.importance !== undefined) {
+        sets.push("importance = ?");
+        params.push(clampImportance(patch.importance));
+    }
+    if (patch.tags !== undefined) {
+        sets.push("tags = ?");
+        params.push(JSON.stringify(patch.tags));
     }
-    else {
-        db.prepare("UPDATE memories SET content = ?, type = ?, importance = ?, tags = ?, updated_at = ? WHERE id = ?").run(content, type, importance, JSON.stringify(tags), ts, id);
+    // An all-undefined patch must not touch the row (or re-embed) at all.
+    if (sets.length === 0)
+        return existing;
+    // Only a real text edit needs the model; metadata-only patches stay cheap.
+    if (patch.content !== undefined && patch.content !== existing.content) {
+        const vec = await embedText(patch.content);
+        sets.push("embedding = ?");
+        params.push(packVector(vec));
+        invalidateVectorCache();
     }
-    return getMemory(id);
+    sets.push("updated_at = ?");
+    params.push(nowMs());
+    // Re-acquire after the await above: the handle could have been closed.
+    const db = getDB();
+    const res = db
+        .prepare(`UPDATE memories SET ${sets.join(", ")} WHERE id = ?`)
+        .run(...params, id);
+    return Number(res.changes) > 0 ? getMemory(id) : null;
 }
 export function forget(id) {
     const db = getDB();
     const res = db.prepare("DELETE FROM memories WHERE id = ?").run(id);
-    invalidateVectorCache();
-    return { deleted: Number(res.changes) > 0 };
+    const deleted = Number(res.changes) > 0;
+    // A mistyped id used to force a full vector re-read on the next search.
+    if (deleted)
+        invalidateVectorCache();
+    return { deleted };
 }
 /** Above this many vectors the O(n^2) dedup pass is skipped (event-loop budget). */
-const DEDUP_MAX_VECTORS = 2000;
+const DEDUP_MAX_VECTORS = 500;
 const DEDUP_SIMILARITY = 0.92;
 const DEDUP_TOKEN_OVERLAP = 0.8;
 function tokenSet(text) {
@@ -183,8 +222,10 @@ function tokenOverlap(a, b) {
  */
 export async function consolidate() {
     const db = getDB();
+    // ORDER BY so the dedup anchor (and therefore the survivor) is deterministic:
+    // scan order can change with the query plan and flip which memory survives.
     const rows = db
-        .prepare(`SELECT ${MEMORY_COLUMNS}, embedding FROM memories`)
+        .prepare(`SELECT ${MEMORY_COLUMNS}, embedding FROM memories ORDER BY importance DESC, created_at, id`)
         .all();
     const vectors = [];
     for (const r of rows) {
@@ -214,48 +255,72 @@ export async function consolidate() {
                 }
                 else {
                     toDelete.add(a.id);
-                    const tmpId = vectors[i].id;
-                    vectors[i].id = vectors[j].id;
-                    vectors[j].id = tmpId;
+                    // Swap the WHOLE entry, not just the id: swapping ids alone leaves
+                    // vectors[i] holding the survivor's id with the *deleted* memory's
+                    // embedding, so a later comparison gates one memory's cosine on
+                    // another's vector and deletes distinct memories.
+                    const tmp = vectors[i];
+                    vectors[i] = vectors[j];
+                    vectors[j] = tmp;
                 }
                 removedDuplicates++;
             }
         }
     }
     const delStmt = db.prepare("DELETE FROM memories WHERE id = ?");
-    for (const id of toDelete)
-        delStmt.run(id);
-    // One UPDATE for the whole store: the old per-row updateMemory() re-embedded
-    // every candidate (a full model inference each) and only saw the newest 100.
-    const promoted = Number(db
-        .prepare("UPDATE memories SET importance = min(1, importance + 0.1) WHERE recall_count >= 5 AND importance < 1")
-        .run().changes);
-    let pruned = 0;
-    const pruneEnabled = process.env.RAG_PRUNE === "1" || process.env.RAG_PRUNE === "true";
-    if (pruneEnabled) {
-        const minImp = numEnv("RAG_PRUNE_IMPORTANCE", 0.2, (n) => n >= 0 && n <= 1);
-        const maxAgeDays = numEnv("RAG_PRUNE_AGE_DAYS", 90, (n) => n >= 0);
-        const cutoff = nowMs() - maxAgeDays * 86_400_000;
-        const stale = db
-            // <= so RAG_PRUNE_AGE_DAYS=0 means "everything is stale"; a strict <
-            // skipped rows created in the same millisecond as the cutoff, which made
-            // the prune silently no-op on a fast machine.
-            .prepare("SELECT id FROM memories WHERE importance < ? AND recall_count = 0 AND created_at <= ?")
-            .all(minImp, cutoff);
-        for (const s of stale) {
-            delStmt.run(s.id);
-            pruned++;
+    // One transaction for the whole destructive pass. In autocommit each delete
+    // committed on its own, so a SQLITE_BUSY or crash midway left duplicates
+    // deleted but promotion (or the prune half) unapplied — unrecoverable and
+    // unreported, because the throw propagated instead of the counts.
+    db.exec("BEGIN IMMEDIATE;");
+    try {
+        for (const id of toDelete)
+            delStmt.run(id);
+        // One UPDATE for the whole store: the old per-row updateMemory() re-embedded
+        // every candidate (a full model inference each) and only saw the newest 100.
+        const promoted = Number(db
+            .prepare("UPDATE memories SET importance = min(1, importance + 0.1) WHERE recall_count >= 5 AND importance < 1")
+            .run().changes);
+        let pruned = 0;
+        const pruneEnabled = process.env.RAG_PRUNE === "1" || process.env.RAG_PRUNE === "true";
+        if (pruneEnabled) {
+            const minImp = numEnv("RAG_PRUNE_IMPORTANCE", 0.2, (n) => n >= 0 && n <= 1);
+            const maxAgeDays = numEnv("RAG_PRUNE_AGE_DAYS", 90, (n) => n >= 0);
+            const cutoff = nowMs() - maxAgeDays * 86_400_000;
+            const stale = db
+                // <= so RAG_PRUNE_AGE_DAYS=0 means "everything is stale"; a strict <
+                // skipped rows created in the same millisecond as the cutoff, which made
+                // the prune silently no-op on a fast machine.
+                .prepare("SELECT id FROM memories WHERE importance < ? AND recall_count = 0 AND created_at <= ?")
+                .all(minImp, cutoff);
+            for (const s of stale) {
+                delStmt.run(s.id);
+                pruned++;
+            }
         }
+        db.exec("COMMIT;");
+        // Deleted rows must leave the vector cache, or the next search still scores
+        // them and can return a memory that no longer exists.
+        if (removedDuplicates > 0 || pruned > 0)
+            invalidateVectorCache();
+        const stats = memoryStats();
+        return {
+            removedDuplicates,
+            promoted,
+            pruned,
+            skippedDedup,
+            totals: { memories: stats.memories, tokens: stats.tokens },
+        };
+    }
+    catch (e) {
+        try {
+            db.exec("ROLLBACK;");
+        }
+        catch {
+            /* transaction already closed */
+        }
+        throw e;
     }
-    invalidateVectorCache();
-    const stats = memoryStats();
-    return {
-        removedDuplicates,
-        promoted,
-        pruned,
-        skippedDedup,
-        totals: { memories: stats.memories, tokens: stats.tokens },
-    };
 }
 export function memoryStats() {
     const db = getDB();
@@ -266,11 +331,14 @@ export function memoryStats() {
     for (const r of byTypeRows)
         byType[r.type] = r.c;
     // LENGTH() in SQL: loading every content blob just to count tokens was a full
-    // table pull on each system_stats / memory_stats call.
-    let totalTokens = 0;
+    // table pull on each system_stats / memory_stats call. Keep the char count in
+    // SQL and estimate here — materialising "x".repeat(n) per row re-allocated the
+    // very blobs this was meant to avoid.
+    let chars = 0;
     for (const r of db.prepare("SELECT LENGTH(content) AS n FROM memories").all()) {
-        totalTokens += estimateTokens("x".repeat(Math.max(0, r.n ?? 0)));
+        chars += Math.max(0, r.n ?? 0);
     }
+    const totalTokens = estimateTokensFromChars(chars);
     return { memories: count.c, tokens: totalTokens, avgImportance: avg.a, byType };
 }
 export async function contextPrompt(query, topK = 6) {

package/dist/memory/memory.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/rag/chunker.d.ts CHANGED Viewed

@@ -13,4 +13,11 @@ export interface ChunkOptions {
 export declare function chunkText(text: string, options?: ChunkOptions): Chunk[];
 /** Rough token estimate: ~4 chars per token for latin, ~1.5 for CJK. */
 export declare function estimateTokens(text: string): number;
+/**
+ * Same estimate for an already-known character count. Lets a caller total
+ * LENGTH() across many rows in SQL instead of materialising each content
+ * blob just to re-count its characters. Assumes no CJK in the total, which
+ * under-counts CJK-heavy stores — the same tradeoff the SQL path already made.
+ */
+export declare function estimateTokensFromChars(chars: number): number;
 //# sourceMappingURL=chunker.d.ts.map

package/dist/rag/chunker.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"chunker.d.ts","sourceRoot":"","sources":["../../src/rag/chunker.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,MAAM,WAAW,KAAK;IACpB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,YAAY;IAC3B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAwHD,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,GAAE,YAAiB,GAAG,KAAK,EAAE,~~CAqE3E~~;AAED,wEAAwE;AACxE,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAInD"}
1	+ {"version":3,"file":"chunker.d.ts","sourceRoot":"","sources":["../../src/rag/chunker.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,MAAM,WAAW,KAAK;IACpB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,YAAY;IAC3B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAwHD,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,GAAE,YAAiB,GAAG,KAAK,EAAE,CAiF3E;AAED,wEAAwE;AACxE,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAInD;AAED;;;;;GAKG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAG7D"}

package/dist/rag/chunker.js CHANGED Viewed

@@ -129,6 +129,19 @@ export function chunkText(text, options = {}) {
         const trimmed = content.trim();
         if (!trimmed)
             return;
+        // Backstop for maxChars. The window is normally kept under budget, but
+        // carry() (up to maxChars/2) plus a full-size piece could still land at
+        // ~1.5x, and an over-budget chunk blows the embedder's context for no
+        // benefit. Split rather than silently shipping an oversized chunk.
+        if (trimmed.length > maxChars) {
+            for (const part of splitLongText(trimmed, maxChars)) {
+                const t = part.trim();
+                if (!t)
+                    continue;
+                chunks.push({ text: t, index: cursor++, tokenCount: estimateTokens(t) });
+            }
+            return;
+        }
         chunks.push({
             text: trimmed,
             index: cursor++,
@@ -190,4 +203,15 @@ export function estimateTokens(text) {
     const rest = text.length - cjk;
     return Math.ceil(cjk * 1.5) + Math.ceil(rest / 4);
 }
+/**
+ * Same estimate for an already-known character count. Lets a caller total
+ * LENGTH() across many rows in SQL instead of materialising each content
+ * blob just to re-count its characters. Assumes no CJK in the total, which
+ * under-counts CJK-heavy stores — the same tradeoff the SQL path already made.
+ */
+export function estimateTokensFromChars(chars) {
+    if (!Number.isFinite(chars) || chars <= 0)
+        return 0;
+    return Math.ceil(chars / 4);
+}
 //# sourceMappingURL=chunker.js.map

package/dist/rag/chunker.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/rag/embeddings.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"embeddings.d.ts","sourceRoot":"","sources":["../../src/rag/embeddings.ts"],"names":[],"mappings":"AAaA,eAAO,MAAM,eAAe,OAAO,CAAC;AAEpC,MAAM,MAAM,iBAAiB,GAAG,OAAO,GAAG,cAAc,CAAC;AAEzD,eAAO,MAAM,kBAAkB,EAAE,iBAC6C,CAAC;AAE/E,eAAO,MAAM,eAAe,QAA2D,CAAC;AAYxF,wBAAgB,WAAW,IAAI,MAAM,CAEpC;AAED,wBAAgB,SAAS,IAAI,MAAM,CAElC;AAED,wBAAgB,aAAa,IAAI;IAAE,QAAQ,EAAE,iBAAiB,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAM3F;AAyBD,4EAA4E;AAC5E,wBAAsB,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC,~~CAenE~~"}
1	+ {"version":3,"file":"embeddings.d.ts","sourceRoot":"","sources":["../../src/rag/embeddings.ts"],"names":[],"mappings":"AAaA,eAAO,MAAM,eAAe,OAAO,CAAC;AAEpC,MAAM,MAAM,iBAAiB,GAAG,OAAO,GAAG,cAAc,CAAC;AAEzD,eAAO,MAAM,kBAAkB,EAAE,iBAC6C,CAAC;AAE/E,eAAO,MAAM,eAAe,QAA2D,CAAC;AAYxF,wBAAgB,WAAW,IAAI,MAAM,CAEpC;AAED,wBAAgB,SAAS,IAAI,MAAM,CAElC;AAED,wBAAgB,aAAa,IAAI;IAAE,QAAQ,EAAE,iBAAiB,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAM3F;AAyBD,4EAA4E;AAC5E,wBAAsB,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC,CA0BnE"}

package/dist/rag/embeddings.js CHANGED Viewed

@@ -70,6 +70,15 @@ export async function embedText(text) {
         throw new Error("transformers embed returned an unexpected shape");
     }
     const vec = Float64Array.from(data);
+    // A NaN/Inf from the model poisons every score it touches: dot products become
+    // NaN, comparisons go false, and the row silently stops matching anything —
+    // an invisible, permanent retrieval hole. Reject it at the boundary instead.
+    for (let i = 0; i < vec.length; i++) {
+        if (!Number.isFinite(vec[i])) {
+            throw new Error(`Embedding for this input contains a non-finite value at index ${i}. ` +
+                `The input is likely empty or degenerate; retry with more text or set EMBEDDING_PROVIDER=local.`);
+        }
+    }
     ensureDim(vec, modelName());
     return vec;
 }

package/dist/rag/embeddings.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/rag/pipeline.d.ts CHANGED Viewed

@@ -34,6 +34,8 @@ export interface IngestDirectoryOptions {
     recursive?: boolean;
     metadata?: Record<string, unknown>;
 }
+/** Max content accepted from a tool call or CLI, so one payload cannot stall the server for a minute. */
+export declare const MAX_INGEST_CHARS = 1000000;
 export declare function ingestText(content: string, title: string, opts?: IngestFileOptions): Promise<IngestResult>;
 export declare function ingestFile(filePath: string, opts?: IngestFileOptions): Promise<IngestResult>;
 export declare function ingestDirectory(dirPath: string, opts?: IngestDirectoryOptions): Promise<{

package/dist/rag/pipeline.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/rag/pipeline.js CHANGED Viewed

@@ -4,21 +4,49 @@ import { contentHash, getDB, newId, nowMs, packVector } from "../db/database.js"
 import { chunkText } from "./chunker.js";
 import { embedText } from "./embeddings.js";
 import { searchChunks, vectorSearch, invalidateVectorCache } from "./vector-search.js";
-/** Insert a FTS row, tolerating an unavailable FTS5 backend. */
+let ftsWarned = false;
+/** Insert a FTS row. Only a genuinely missing FTS5 backend degrades silently —
+ * any other failure (disk full, corruption, SQLITE_BUSY) must surface, because
+ * swallowing it left every chunk permanently invisible to the keyword leg with
+ * no diagnostic and no rebuild path. */
 function insertFtsRow(rowid, text) {
     try {
         getDB().prepare("INSERT INTO chunks_fts(rowid, content) VALUES (?, ?)").run(rowid, text);
     }
-    catch {
-        // FTS missing — hybrid degrades to vector-only.
+    catch (e) {
+        const msg = e.message;
+        // Match only "the FTS table is not there". A looser /chunks_fts/ test also
+        // swallowed UNIQUE and corruption errors, which are exactly the failures
+        // this change exists to surface.
+        if (!/no such table: chunks_fts|no such module: fts5/i.test(msg))
+            throw e;
+        if (!ftsWarned) {
+            ftsWarned = true;
+            process.stderr.write("rag: chunks_fts unavailable — hybrid search degraded to vector-only\n");
+        }
     }
 }
+/** SQLite UNIQUE violation, which node:sqlite surfaces as errcode 2067. */
+function isUniqueViolation(e, column) {
+    const err = e;
+    const msg = err?.message ?? "";
+    // "." must be escaped or it matches any character.
+    return err?.errcode === 2067 || msg.includes(`UNIQUE constraint failed: ${column}`);
+}
+/** Max content accepted from a tool call or CLI, so one payload cannot stall the server for a minute. */
+export const MAX_INGEST_CHARS = 1_000_000;
 export async function ingestText(content, title, opts = {}) {
     const db = getDB();
     const ts = nowMs();
-    if (typeof content !== "string" || content.length === 0) {
+    // trim(): whitespace-only content produced a permanent 0-chunk document that
+    // could never be searched yet still occupied the content_hash unique index.
+    if (typeof content !== "string" || content.trim().length === 0) {
         throw new Error("Ingest content must be a non-empty string");
     }
+    if (content.length > MAX_INGEST_CHARS) {
+        throw new Error(`Ingest content too large (${content.length} chars > limit ${MAX_INGEST_CHARS}). ` +
+            `Split it, or use ingest_file / ingest_dir for large sources.`);
+    }
     // Content-hash dedup: identical documents are never re-embedded. `dedupScope`
     // keeps sources that legitimately repeat the same text apart (e.g. "ok" typed
     // in two different sessions).
@@ -40,13 +68,21 @@ export async function ingestText(content, title, opts = {}) {
     }
     const docId = newId();
     const chunks = chunkText(content);
+    if (chunks.length === 0) {
+        throw new Error("Ingest produced no indexable content (no non-whitespace text)");
+    }
     let tokens = 0;
     // Embed BEFORE opening the transaction. The MCP SDK does not serialize tool
     // calls, so awaiting inside a transaction let a concurrent request's writes
     // join this one — and a failure here rolled back that other request's work.
+    // The yield keeps the event loop responsive: a 10 MB file is ~11k chunks and
+    // the local embedder is synchronous, so without it the stdio server could not
+    // answer any other tool call for the whole ingest.
     const vectors = [];
-    for (const chunk of chunks) {
-        vectors.push(await embedText(chunk.text));
+    for (let i = 0; i < chunks.length; i++) {
+        vectors.push(await embedText(chunks[i].text));
+        if ((i & 15) === 15)
+            await new Promise((resolve) => setImmediate(resolve));
     }
     // All writes for one document are atomic, and the block below is fully
     // synchronous, so no other request can interleave inside it.
@@ -70,6 +106,24 @@ export async function ingestText(content, title, opts = {}) {
         catch {
             /* transaction already closed */
         }
+        // Two identical ingests can both pass the dedup SELECT above: the check and
+        // this INSERT are separated by chunking + embedding, and MCP tool calls are
+        // not serialized. Let the unique index arbitrate and report a dedup hit
+        // rather than failing the caller with a raw driver error.
+        if (isUniqueViolation(e, "documents.content_hash")) {
+            const again = getDB()
+                .prepare("SELECT id, title, chunk_count FROM documents WHERE content_hash = ?")
+                .get(hash);
+            if (again) {
+                return {
+                    docId: again.id,
+                    title: again.title,
+                    chunks: again.chunk_count,
+                    tokens: 0,
+                    deduplicated: true,
+                };
+            }
+        }
         throw e;
     }
     invalidateVectorCache();
@@ -131,18 +185,33 @@ export async function ingestFile(filePath, opts = {}) {
     assertAllowedPath(abs);
     const content = fs.readFileSync(abs, "utf-8");
     const title = path.basename(abs);
-    return ingestText(content, title, {
+    return ingestText(stripBom(content), title, {
         source: abs,
         contentType: opts.contentType ?? guessContentType(abs),
         metadata: opts.metadata ?? { path: abs },
     });
 }
+/**
+ * Drop a UTF-8 BOM. It survives readFileSync as U+FEFF, so a Windows-authored
+ * .md file's first heading indexed as "\ufeff# Title" — the FTS trigram tokenizer
+ * keyed on it and the title never matched a plain "Title" query.
+ */
+function stripBom(text) {
+    return text.charCodeAt(0) === 0xfeff ? text.slice(1) : text;
+}
 /** Let the event loop breathe every N files during large directory ingests. */
 function yieldLoop() {
     return new Promise((resolve) => setImmediate(resolve));
 }
 /** Cap the payload: a big directory must not return one line per file. */
 const DIR_REPORT_LIMIT = 50;
+/**
+ * Hard ceiling on files actually ingested. DIR_REPORT_LIMIT only truncated the
+ * response, so pointing this at a large tree still embedded every file and held
+ * the server hostage; the cap is reported explicitly instead of silently
+ * dropping the remainder.
+ */
+const DIR_MAX_FILES = 500;
 export async function ingestDirectory(dirPath, opts = {}) {
     const root = path.resolve(dirPath);
     if (!fs.existsSync(root) || !fs.statSync(root).isDirectory()) {
@@ -157,9 +226,12 @@ export async function ingestDirectory(dirPath, opts = {}) {
                 throw new Error(`Invalid extension: ${JSON.stringify(e)}`);
         }
     }
-    const exts = opts.extensions?.map((e) => (e.startsWith(".") ? e : `.${e}`)) ?? [
+    // Lowercase once: `full.endsWith(e)` is case-sensitive, so an explicit
+    // extensions: [".TS"] silently matched nothing on a Windows-authored tree
+    // (or a request for ".Md" against README.MD).
+    const exts = (opts.extensions?.map((e) => (e.startsWith(".") ? e : `.${e}`)) ?? [
         ".ts", ".tsx", ".js", ".jsx", ".json", ".md", ".txt", ".py", ".go", ".rs", ".java", ".c", ".h", ".cpp", ".html", ".css",
-    ];
+    ]).map((e) => e.toLowerCase());
     const skipDirs = new Set([".git", "dist", "node_modules", ".rag-data", ".test-data", ".venv"]);
     const files = [];
     const walk = (dir) => {
@@ -169,19 +241,23 @@ export async function ingestDirectory(dirPath, opts = {}) {
                 if (opts.recursive && !skipDirs.has(entry.name) && !entry.name.startsWith("."))
                     walk(full);
             }
-            else if (entry.isFile() && exts.some((e) => full.endsWith(e))) {
+            else if (entry.isFile() && exts.some((e) => full.toLowerCase().endsWith(e))) {
                 files.push(full);
             }
         }
     };
     walk(root);
+    // Deterministic slice before any work: walk() order is filesystem-dependent,
+    // so capping after sorting keeps "which 500" reproducible across machines.
     const sorted = files.sort();
+    const truncated = Math.max(0, sorted.length - DIR_MAX_FILES);
+    const targets = truncated > 0 ? sorted.slice(0, DIR_MAX_FILES) : sorted;
     const ingested = [];
     const skipped = [];
     let ingestedCount = 0;
     let skippedCount = 0;
-    for (let i = 0; i < sorted.length; i++) {
-        const f = sorted[i];
+    for (let i = 0; i < targets.length; i++) {
+        const f = targets[i];
         try {
             const res = await ingestFile(f, { metadata: opts.metadata ?? { ingestDir: root } });
             ingestedCount++;
@@ -196,6 +272,12 @@ export async function ingestDirectory(dirPath, opts = {}) {
         if (i % 10 === 9)
             await yieldLoop();
     }
+    if (truncated > 0) {
+        skippedCount += truncated;
+        if (skipped.length < DIR_REPORT_LIMIT) {
+            skipped.push(`${truncated} more file(s) matched but were not ingested: directory ingest is capped at ${DIR_MAX_FILES} per call`);
+        }
+    }
     return { ingested, skipped, ingestedCount, skippedCount };
 }
 export async function searchDocs(query, topK = 10, minScore = 0.08, filters) {

package/dist/rag/pipeline.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/rag/vector-search.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"vector-search.d.ts","sourceRoot":"","sources":["../../src/rag/vector-search.ts"],"names":[],"mappings":"AAGA,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;IACZ,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,UAAU,GAAG,IAAI,CAAC;IAC7B,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,aAAa;IAC5B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,UAAU,CAAC,EAAE,QAAQ,GAAG,UAAU,CAAC;IACnC,QAAQ,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACvB,6EAA6E;IAC7E,UAAU,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;CAC1B;AAmBD,wBAAgB,qBAAqB,IAAI,IAAI,CAM5C;~~AAsDD~~,gFAAgF;AAChF,wBAAgB,YAAY,CAC1B,QAAQ,EAAE,YAAY,EACtB,OAAO,GAAE,aAAkB,GAC1B,KAAK,CAAC;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAuBvC;AAoED,MAAM,WAAW,kBAAkB;IACjC,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,kBAAkB;IACjC,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,CAAC,EAAE,kBAAkB,CAAC;CAC9B;AAED;;;;;;;GAOG;AACH,wBAAgB,YAAY,CAAC,QAAQ,EAAE,YAAY,EAAE,IAAI,EAAE,kBAAkB,GAAG,SAAS,EAAE,CAgG1F"}
1	+ {"version":3,"file":"vector-search.d.ts","sourceRoot":"","sources":["../../src/rag/vector-search.ts"],"names":[],"mappings":"AAGA,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;IACZ,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,UAAU,GAAG,IAAI,CAAC;IAC7B,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,aAAa;IAC5B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,UAAU,CAAC,EAAE,QAAQ,GAAG,UAAU,CAAC;IACnC,QAAQ,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACvB,6EAA6E;IAC7E,UAAU,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;CAC1B;AAmBD,wBAAgB,qBAAqB,IAAI,IAAI,CAM5C;AA+DD,gFAAgF;AAChF,wBAAgB,YAAY,CAC1B,QAAQ,EAAE,YAAY,EACtB,OAAO,GAAE,aAAkB,GAC1B,KAAK,CAAC;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAuBvC;AAoED,MAAM,WAAW,kBAAkB;IACjC,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,kBAAkB;IACjC,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,CAAC,EAAE,kBAAkB,CAAC;CAC9B;AAED;;;;;;;GAOG;AACH,wBAAgB,YAAY,CAAC,QAAQ,EAAE,YAAY,EAAE,IAAI,EAAE,kBAAkB,GAAG,SAAS,EAAE,CAgG1F"}

package/dist/rag/vector-search.js CHANGED Viewed

@@ -37,9 +37,14 @@ function loadVectors(table) {
     if (table === "memories") {
         if (cacheMemories)
             return cacheMemories;
-        const rows = db.prepare("SELECT id, embedding FROM memories").all();
         const out = [];
-        for (const r of rows) {
+        // iterate(), not all(): .all() materialised every embedding blob as a
+        // Uint8Array first, so peak memory held the packed store AND the unpacked
+        // Float64Array copies at once. Streaming keeps one blob alive at a time.
+        // Nothing inside the loop touches the DB, so the open statement is safe.
+        for (const r of db
+            .prepare("SELECT id, embedding FROM memories")
+            .iterate()) {
             const vec = unpackVector(r.embedding);
             if (vec)
                 out.push({ id: r.id, vec });
@@ -51,11 +56,10 @@ function loadVectors(table) {
     // chunks keep their implicit rowid too, for FTS bookkeeping.
     if (cacheChunks)
         return cacheChunks;
-    const rows = db
-        .prepare("SELECT id, doc_id, rowid AS rid, embedding FROM chunks")
-        .all();
     const out = [];
-    for (const r of rows) {
+    for (const r of db
+        .prepare("SELECT id, doc_id, rowid AS rid, embedding FROM chunks")
+        .iterate()) {
         const vec = unpackVector(r.embedding);
         if (vec)
             out.push({ id: r.id, id2: String(r.rid), docId: r.doc_id, vec });

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	@@ -1 +1 @@
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1	+ {"version":3,"file":"transcript.d.ts","sourceRoot":"","sources":["../../src/session/transcript.ts"],"names":[],"mappings":"AAkBA,MAAM,WAAW,YAAY;IAC3B,SAAS,EAAE,MAAM,CAAC;IAClB,EAAE,EAAE,MAAM,CAAC;IACX,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,UAAU;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,YAAY,EAAE,MAAM,CAAC;IACrB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,MAAM,aAAa,GAAG,aAAa,GAAG,aAAa,CAAC;AAE1D;;;;;GAKG;AACH,wBAAgB,WAAW,IAAI,MAAM,EAAE,CAwBtC;AA0ED,mFAAmF;AACnF,wBAAgB,oBAAoB,CAClC,KAAK,SAAK,EACV,IAAI,GAAE;IAAE,SAAS,CAAC,EAAE,MAAM,CAAA;CAAO,GAChC,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAC;IAAC,WAAW,EAAE,MAAM,CAAA;CAAE,CAAC,CAiB9E;AAED,qFAAqF;AACrF,wBAAgB,aAAa,CAAC,IAAI,GAAE;IAAE,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAA;CAAO,GAAG;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAA;CAAE,GAAG,IAAI,CAM3I;AAED,wFAAwF;AACxF,wBAAsB,YAAY,CAChC,IAAI,GAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GACxE,OAAO,CAAC;IAAE,KAAK,EAAE,OAAO,CAAC;IAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAK/E;AAkBD;+EAC+E;AAC/E,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,SAAI,GAAG,YAAY,EAAE,CAmBjF;AAyDD,sDAAsD;AACtD,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,YAAY,EAAE,CA+BtD;AA+CD;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAyBlD;AAED,qFAAqF;AACrF,wBAAsB,aAAa,CAAC,OAAO,EAAE,YAAY,EAAE,EAAE,MAAM,EAAE,aAAa,GAAG,OAAO,CAAC,UAAU,CAAC,CAwBvG;AAED,wBAAsB,aAAa,CACjC,SAAS,EAAE,MAAM,EACjB,IAAI,GAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GACpD,OAAO,CAAC;IAAE,SAAS,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAI9D;AAED,wBAAsB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GAAG,OAAO,CAAC;IAAE,IAAI,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAIjI;AAED,wBAAsB,YAAY,CAChC,GAAG,SAAkB,EACrB,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GACpC,OAAO,CAAC;IAAE,KAAK,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAsBzC"}

package/dist/session/transcript.js CHANGED Viewed

@@ -142,10 +142,17 @@ export async function ingestLatest(opts = {}) {
 }
 /** Hard cap on user messages read from one session (a whole session can be huge). */
 const DEFAULT_MAX_MESSAGES = 500;
+/** 64 MB: far above any real session log, far below what would exhaust the heap. */
+const DEFAULT_MAX_LOG_BYTES = 64 * 1024 * 1024;
 function maxMessages() {
     const raw = Number(process.env.RAG_SESSION_MAX_MSGS);
     return Number.isFinite(raw) && raw > 0 ? Math.trunc(raw) : DEFAULT_MAX_MESSAGES;
 }
+/** Upper bound on a plugin-written .jsonl log before we refuse to read it. */
+function maxJsonlBytes() {
+    const raw = Number(process.env.RAG_SESSION_MAX_LOG_BYTES);
+    return Number.isFinite(raw) && raw > 0 ? Math.trunc(raw) : DEFAULT_MAX_LOG_BYTES;
+}
 /** Extract user-typed text from one session, oldest first. Searches the global
  * and local opencode DBs (a session may live in either, depending on mode). */
 export function getSessionTranscript(sessionId, limit = 0) {
@@ -188,15 +195,21 @@ function transcriptFromDb(dbPath, sessionId, limit) {
         assertOpencodeSchema(db, "part", ["message_id", "data"]);
         const cap = limit > 0 ? limit : maxMessages();
         const msgs = db
-            .prepare(`SELECT id, time_created, data FROM message
-          WHERE session_id = ? AND json_extract(data, '$.role') = 'user'
+            .prepare(
+        // json_valid() guards both sides: json_extract on a malformed blob raises
+        // "malformed JSON" and killed the whole read, so one corrupt part lost
+        // every other message in the session.
+        `SELECT id, time_created, data FROM message
+          WHERE session_id = ? AND json_valid(data)
+            AND json_extract(data, '$.role') = 'user'
           ORDER BY time_created ASC
           LIMIT ?`)
             .all(sessionId, cap);
         // Pull only text parts in SQL — a session holds multi-MB image/tool blobs and
         // parsing every one of them just to throw it away was the memory spike.
         const partsStatement = db.prepare(`SELECT json_extract(data, '$.text') AS text FROM part
-        WHERE message_id = ? AND json_extract(data, '$.type') = 'text'`);
+        WHERE message_id = ? AND json_valid(data)
+          AND json_extract(data, '$.type') = 'text'`);
         for (const m of msgs) {
             if (limit > 0 && entries.length >= limit)
                 break;
@@ -218,6 +231,13 @@ function transcriptFromDb(dbPath, sessionId, limit) {
 export function readJsonl(file) {
     if (!fs.existsSync(file))
         throw new Error(`Not found: ${file}`);
+    // Bound the read: the plugin appends for the life of a session, so a long-running
+    // .jsonl grows without limit and readFileSync would pull all of it into memory.
+    const size = fs.statSync(file).size;
+    if (size > maxJsonlBytes()) {
+        throw new Error(`Session log too large (${size} bytes > limit ${maxJsonlBytes()}): ${file}. ` +
+            `Rotate or truncate the log, or raise RAG_SESSION_MAX_LOG_BYTES.`);
+    }
     const raw = fs.readFileSync(file, "utf8");
     const base = path.basename(file).replace(/\.jsonl$/, "");
     const entries = [];

package/dist/session/transcript.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "mcp-rag-memory",
-  "version": "2.5.0",
+  "version": "2.6.0",
   "description": "RAG + Context Management MCP server: long-term memory, vector storage, knowledge retrieval. Run with npx, zero external APIs.",
   "type": "module",
   "engines": {