mcp-rag-memory 2.4.1 → 2.7.0

package/dist/rag/vector-search.js

@@ -1,45 +1,102 @@
 import { getDB, unpackVector, getEmbedDim } from "../db/database.js";
 import { dotProduct } from "./embedder.js";
-const SEARCH_MODE = process.env.SEARCH_MODE === "vector" || process.env.SEARCH_MODE === "keyword"
-    ? process.env.SEARCH_MODE
-    : "hybrid";
+/** Read at call time (not frozen at import) so the mode can change per process/test. */
+function searchMode() {
+    const raw = process.env.SEARCH_MODE;
+    return raw === "vector" || raw === "keyword" ? raw : "hybrid";
+}
 const RRF_K = 60;
 const LIST_CAP = 60;
-/* In-memory vector cache — invalidated on every write. */
+/* In-memory vector cache — invalidated on local writes and whenever another
+ * process commits to the shared store (CLI, auto-save plugin, second server). */
 let cacheChunks = null;
 let cacheMemories = null;
+let cacheDataVersion = null;
 export function invalidateVectorCache() {
     cacheChunks = null;
     cacheMemories = null;
+    // Re-arm the watch: the version we recorded describes the store *before* the
+    // local write, so the next load must not treat our own commit as a foreign one.
+    cacheDataVersion = null;
+}
+/** PRAGMA data_version changes when another connection commits; ours never does. */
+function dataVersion() {
+    const row = getDB().prepare("PRAGMA data_version").get();
+    return row ? Number(row.data_version) : 0;
+}
+function dropStaleCache() {
+    if (cacheDataVersion === null)
+        return;
+    const current = dataVersion();
+    if (current !== cacheDataVersion)
+        invalidateVectorCache();
+}
+/**
+ * Warn once per cache build when the in-memory vector cache is large enough to
+ * threaten the host process.
+ *
+ * The cache is deliberately uncapped and complete: truncating it would silently
+ * change which documents are searchable, which is far worse than being slow. So
+ * the honest options are to say so, or to OOM. At 1024 dims the cache costs 8 KB
+ * per row, so 100k chunks is ~800 MB — the failure mode arrives suddenly, with
+ * no diagnostic until the process is already dying.
+ */
+const VECTOR_CACHE_WARN_MB_DEFAULT = 256;
+let cacheWarned = false;
+/** Read at call time so the threshold can be tuned without a rebuild. */
+function vectorCacheWarnMb() {
+    const raw = Number(process.env.RAG_VECTOR_CACHE_WARN_MB);
+    return Number.isFinite(raw) && raw > 0 ? raw : VECTOR_CACHE_WARN_MB_DEFAULT;
+}
+function warnIfLargeCache(table, rows, dim) {
+    if (cacheWarned || dim <= 0)
+        return;
+    const limitMb = vectorCacheWarnMb();
+    const mb = (rows * dim * 8) / (1024 * 1024);
+    if (mb < limitMb)
+        return;
+    cacheWarned = true;
+    process.stderr.write(`rag: vector cache for ${table} holds ${rows} rows (${dim}-dim) ≈ ${mb.toFixed(0)} MB in RAM ` +
+        `(threshold ${limitMb} MB). Search stays correct, but memory grows with the store; consider ` +
+        `pruning old documents, or set RAG_VECTOR_CACHE_WARN_MB to tune this warning.\n`);
 }
 function loadVectors(table) {
     const db = getDB();
+    dropStaleCache();
     if (table === "memories") {
         if (cacheMemories)
             return cacheMemories;
-        const rows = db.prepare("SELECT id, embedding FROM memories").all();
         const out = [];
-        for (const r of rows) {
+        // iterate(), not all(): .all() materialised every embedding blob as a
+        // Uint8Array first, so peak memory held the packed store AND the unpacked
+        // Float64Array copies at once. Streaming keeps one blob alive at a time.
+        // Nothing inside the loop touches the DB, so the open statement is safe.
+        for (const r of db
+            .prepare("SELECT id, embedding FROM memories")
+            .iterate()) {
             const vec = unpackVector(r.embedding);
             if (vec)
                 out.push({ id: r.id, vec });
         }
         cacheMemories = out;
+        warnIfLargeCache("memories", out.length, out[0]?.vec.length ?? 0);
+        cacheDataVersion = dataVersion();
         return out;
     }
     // chunks keep their implicit rowid too, for FTS bookkeeping.
     if (cacheChunks)
         return cacheChunks;
-    const rows = db
-        .prepare("SELECT id, rowid AS rid, embedding FROM chunks")
-        .all();
     const out = [];
-    for (const r of rows) {
+    for (const r of db
+        .prepare("SELECT id, doc_id, rowid AS rid, embedding FROM chunks")
+        .iterate()) {
         const vec = unpackVector(r.embedding);
         if (vec)
-            out.push({ id: r.id, id2: String(r.rid), vec });
+            out.push({ id: r.id, id2: String(r.rid), docId: r.doc_id, vec });
     }
     cacheChunks = out;
+    warnIfLargeCache("chunks", out.length, out[0]?.vec.length ?? 0);
+    cacheDataVersion = dataVersion();
     return out;
 }
 function dimGuard(queryVec) {
@@ -56,17 +113,37 @@ export function vectorSearch(queryVec, options = {}) {
     const table = options.collection === "memories" ? "memories" : "chunks";
     dimGuard(queryVec);
     const rows = loadVectors(table);
+    const only = options.onlyKeys;
+    const onlyDocs = options.onlyDocIds;
     const scored = [];
     for (const r of rows) {
-        const score = dotProduct(queryVec, r.vec);
+        if (only && !only.has(r.id))
+            continue;
+        if (onlyDocs) {
+            const docId = r.docId;
+            if (!docId || !onlyDocs.has(docId))
+                continue;
+        }
+        // Clamp to [-1, 1]: these vectors are L2-normalized, but a hand-written or
+        // future provider's blob must not leak scores > 1 past min_score clamps.
+        const score = Math.max(-1, Math.min(1, dotProduct(queryVec, r.vec)));
         if (score >= minScore)
             scored.push({ key: r.id, score });
     }
     scored.sort((a, b) => b.score - a.score);
     return scored.slice(0, topK);
 }
-/** BM25 keyword hits via FTS5, best-first. Returns empty when the query has no terms. */
-function ftsHits(queryText, limit) {
+/**
+ * BM25 keyword hits via FTS5, best-first. Returns empty when the query has no terms.
+ * Filters are pushed into SQL (no id materialization) and every token is quoted as
+ * an FTS5 string, so punctuation like "opencode-db" cannot void the keyword leg.
+ *
+ * The raw BM25 value is carried through. bm25() returns a negative number that
+ * becomes more negative as relevance rises, so it is negated into a positive
+ * relevance figure for reporting; without it the keyword leg had no observable
+ * strength at all, making it impossible to tell a bad ranking from a weak match.
+ */
+function ftsHits(queryText, limit, filters) {
     const tokens = queryText
         .toLowerCase()
         .replace(/[^\p{L}\p{N}_-]+/gu, " ")
@@ -77,22 +154,40 @@ function ftsHits(queryText, limit) {
     if (tokens.length === 0)
         return [];
     const db = getDB();
+    const clauses = [];
+    const params = [];
+    if (filters?.docId) {
+        clauses.push("c.doc_id = ?");
+        params.push(filters.docId);
+    }
+    if (filters?.source) {
+        clauses.push("d.source = ?");
+        params.push(filters.source);
+    }
+    const filterClause = clauses.length ? ` AND ${clauses.join(" AND ")}` : "";
     try {
         const rows = db
-            .prepare(`SELECT c.id
+            .prepare(`SELECT c.id, bm25(chunks_fts) AS bm25
            FROM chunks_fts
            JOIN chunks c ON c.rowid = chunks_fts.rowid
-          WHERE chunks_fts MATCH ?
+           JOIN documents d ON d.id = c.doc_id
+          WHERE chunks_fts MATCH ?${filterClause}
           ORDER BY bm25(chunks_fts)
           LIMIT ?`)
-            .all(tokens.join(" "), limit);
-        return rows.map((r) => ({ key: r.id }));
+            .all(quoteFtsQuery(tokens), ...params, limit);
+        return rows.map((r) => ({ key: r.id, bm25: Number(r.bm25) }));
     }
-    catch {
-        // FTS5 unavailable or unsupported query syntax — degrade to vector-only.
+    catch (e) {
+        // FTS5 unavailable or an unsupported query — degrade to the vector leg
+        // instead of failing the whole search, but say so on stderr.
+        process.stderr.write(`rag: FTS5 keyword leg unavailable (${e.message})\n`);
         return [];
     }
 }
+/** Quote each token as an FTS5 string literal so "-" and other syntax stay literal. */
+function quoteFtsQuery(tokens) {
+    return tokens.map((t) => `"${t.replace(/"/g, '""')}"`).join(" ");
+}
 /** Reciprocal-rank fusion over multiple ranked lists of {key}. */
 function rrfMerge(lists) {
     const scores = new Map();
@@ -104,54 +199,84 @@ function rrfMerge(lists) {
     return scores;
 }
 /**
- * Hybrid search: FTS5 BM25 keyword + vector, fused with RRF.
+ * Hybrid search: FTS5 BM25 keyword + vector, fused with RRF for ranking.
  * Controlled by SEARCH_MODE=hybrid|vector|keyword (default hybrid).
+ *
+ * The reported `score` is always on a 0..1 relevance scale — the vector cosine
+ * when the chunk has one, otherwise a rank-decayed keyword score — so `minScore`
+ * means the same thing in every mode (RRF only decides the order).
  */
 export function searchChunks(queryVec, opts) {
-    const { queryText = "", topK, minScore, filters } = opts;
+    const { queryText = "", topK, minScore, filters, explain = false } = opts;
     const db = getDB();
-    const cap = Math.max(topK * 2, LIST_CAP);
-    let vectorHits = [];
-    if (SEARCH_MODE !== "keyword") {
-        vectorHits = vectorSearch(queryVec, { topK: cap, minScore, collection: "chunks" });
-    }
-    let kwHits = [];
-    if (SEARCH_MODE !== "vector") {
-        kwHits = ftsHits(queryText, cap);
-    }
-    let finalIds;
-    if (SEARCH_MODE === "vector") {
-        finalIds = vectorHits.slice(0, topK);
-    }
-    else if (SEARCH_MODE === "keyword") {
-        finalIds = kwHits.slice(0, topK).map((h, i) => ({ key: h.key, score: 1 - i * 1e-6 }));
-    }
-    else {
-        const fused = rrfMerge([vectorHits, kwHits]);
-        finalIds = [...fused.entries()]
-            .map(([key, score]) => ({ key, score }))
-            .sort((a, b) => b.score - a.score)
-            .slice(0, topK);
-    }
-    // Narrow ranked results to matching documents (docId and/or source).
+    const mode = searchMode();
+    // Resolve the doc filter BEFORE ranking so unfiltered chunks can never
+    // out-rank a filtered one and squeeze it out of the top-K. Document ids, not
+    // chunk ids: one row per document instead of one per chunk.
+    let allowedDocIds;
     if (filters && (filters.docId || filters.source)) {
-        const idPlaceholders = finalIds.map(() => "?").join(", ");
-        const clauses = [`c.id IN (${idPlaceholders})`];
-        const params = finalIds.map((f) => f.key);
+        const clauses = [];
+        const params = [];
         if (filters.docId) {
-            clauses.push("c.doc_id = ?");
+            clauses.push("id = ?");
             params.push(filters.docId);
         }
         if (filters.source) {
-            clauses.push("d.source = ?");
+            clauses.push("source = ?");
             params.push(filters.source);
         }
         const allowed = db
-            .prepare(`SELECT c.id FROM chunks c JOIN documents d ON d.id = c.doc_id WHERE ${clauses.join(" AND ")}`)
+            .prepare(`SELECT id FROM documents WHERE ${clauses.join(" AND ")}`)
             .all(...params);
-        const allowedSet = new Set(allowed.map((r) => r.id));
-        finalIds = finalIds.filter((f) => allowedSet.has(f.key));
+        allowedDocIds = new Set(allowed.map((r) => r.id));
     }
+    const cap = Math.max(topK * 2, LIST_CAP);
+    let vectorHits = [];
+    if (mode !== "keyword") {
+        vectorHits = vectorSearch(queryVec, { topK: cap, minScore, collection: "chunks", onlyDocIds: allowedDocIds });
+    }
+    let kwHits = [];
+    if (mode !== "vector") {
+        kwHits = allowedDocIds && allowedDocIds.size === 0 ? [] : ftsHits(queryText, cap, filters);
+    }
+    // Rank-decayed keyword relevance in 0..1, so keyword-only hits still carry a
+    // comparable score instead of the old flat 1.0 / RRF value.
+    const kwScore = new Map();
+    kwHits.forEach((h, rank) => kwScore.set(h.key, 1 - rank / (kwHits.length + 1)));
+    const vectorScore = new Map();
+    for (const h of vectorHits)
+        vectorScore.set(h.key, h.score);
+    // Per-leg ranks and true BM25 strength, kept for `explain` and for `legs`.
+    const vectorRank = new Map();
+    vectorHits.forEach((h, rank) => vectorRank.set(h.key, rank));
+    const keywordRank = new Map();
+    kwHits.forEach((h, rank) => keywordRank.set(h.key, rank));
+    const bm25Raw = new Map();
+    for (const h of kwHits)
+        bm25Raw.set(h.key, -h.bm25);
+    // Strongest BM25 in this result set defines the top of the 0..1 keyword scale,
+    // so keyword relevance is comparable between queries instead of being an
+    // absolute number that drifts with corpus size and term frequency.
+    const bm25Max = bm25Raw.size === 0 ? 0 : Math.max(...bm25Raw.values());
+    const bm25Norm = new Map();
+    for (const [key, v] of bm25Raw)
+        bm25Norm.set(key, bm25Max > 0 ? v / bm25Max : 0);
+    let ordered;
+    let rrf = new Map();
+    if (mode === "vector") {
+        ordered = vectorHits.slice(0, topK).map((h) => h.key);
+    }
+    else if (mode === "keyword") {
+        ordered = kwHits.slice(0, topK).map((h) => h.key);
+    }
+    else {
+        rrf = rrfMerge([vectorHits, kwHits]);
+        ordered = [...rrf.entries()].sort((a, b) => b[1] - a[1]).map(([key]) => key).slice(0, topK);
+    }
+    // Threshold on the final score, in every mode — not just on the vector leg.
+    const finalIds = ordered
+        .map((key) => ({ key, score: Math.max(vectorScore.get(key) ?? 0, kwScore.get(key) ?? 0) }))
+        .filter((f) => f.score >= minScore);
     if (finalIds.length === 0)
         return [];
     const ids = finalIds.map((f) => f.key);
@@ -167,17 +292,34 @@ export function searchChunks(queryVec, opts) {
         const row = byId.get(f.key);
         if (!row)
             return [];
-        return [
-            {
-                id: row.id,
-                docId: row.doc_id,
-                docTitle: row.doc_title,
-                chunkIndex: row.idx,
-                content: row.content,
-                score: f.score,
-                tokenCount: row.token_count,
-            },
-        ];
+        const vRank = vectorRank.get(f.key);
+        const kRank = keywordRank.get(f.key);
+        const legs = [];
+        if (vRank !== undefined)
+            legs.push("vector");
+        if (kRank !== undefined)
+            legs.push("keyword");
+        const hit = {
+            id: row.id,
+            docId: row.doc_id,
+            docTitle: row.doc_title,
+            chunkIndex: row.idx,
+            content: row.content,
+            score: f.score,
+            tokenCount: row.token_count,
+            legs,
+        };
+        if (explain) {
+            hit.explain = {
+                rrfScore: Number((rrf.get(f.key) ?? 0).toFixed(6)),
+                // The raw per-leg values, never `f.score`: that is max(cosine, keyword),
+                // so reporting it as the vector score would overstate the vector leg
+                // precisely when the keyword leg carried the hit.
+                ...(vRank !== undefined ? { vectorScore: vectorScore.get(f.key), vectorRank: vRank } : {}),
+                ...(kRank !== undefined ? { keywordScore: bm25Norm.get(f.key) ?? 0, keywordRank: kRank } : {}),
+            };
+        }
+        return [hit];
     });
 }
 //# sourceMappingURL=vector-search.js.map

package/dist/rag/vector-search.js.map

@@ -1 +1 @@
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package/dist/session/transcript.d.ts

@@ -10,10 +10,12 @@ export interface SyncResult {
     skipped: number;
 }
 export type SessionSource = "opencode-db" | "session-log";
-/** Where opencode keeps its session/message history. Override via OPENCODE_DB. */
-export declare const OPENCODE_DB: string;
-/** Desktop/local-mode db (per-project sessions) used as a fallback source. */
-export declare const OPENCODE_DB_LOCAL: string;
+/**
+ * Where opencode keeps its session/message history, in probe order.
+ * Read on every call (not frozen at import) so OPENCODE_DB can be pointed at a
+ * different store — or a fixture — at any time. Opencode uses the POSIX XDG
+ * path on Linux/macOS and %LOCALAPPDATA% on Windows.
+ */
 export declare function opencodeDbs(): string[];
 /** Merge top-level sessions from the global + local opencode DBs, newest first. */
 export declare function listOpenCodeSessions(limit?: number, opts?: {
@@ -43,7 +45,15 @@ export declare function ingestLatest(opts?: {
     sessionId?: string;
     entries: number;
 } & SyncResult>;
-/** Extract user-typed text from one session, oldest first. */
+/** Extract user-typed text from one session, oldest first. Searches the global
+ * and local opencode DBs (a session may live in either, depending on mode).
+ *
+ * Each candidate DB is probed independently: `opencodeDbs()` returns both the
+ * global and local paths whether or not each one exists, so a stale or corrupt
+ * file must not abort the sync when a healthy DB is also present. Failures are
+ * collected and only reported when every candidate failed *and* none of them
+ * held the session, so a single bad path can no longer masquerade as
+ * "session not found". */
 export declare function getSessionTranscript(sessionId: string, limit?: number): SessionEntry[];
 /** Read entries from a plugin-written .jsonl file. */
 export declare function readJsonl(file: string): SessionEntry[];

package/dist/session/transcript.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"transcript.d.ts","sourceRoot":"","sources":["../../src/session/transcript.ts"],"names":[],"mappings":"AAkBA,MAAM,WAAW,YAAY;IAC3B,SAAS,EAAE,MAAM,CAAC;IAClB,EAAE,EAAE,MAAM,CAAC;IACX,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,UAAU;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,YAAY,EAAE,MAAM,CAAC;IACrB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,MAAM,aAAa,GAAG,aAAa,GAAG,aAAa,CAAC;AAE1D;;;;;GAKG;AACH,wBAAgB,WAAW,IAAI,MAAM,EAAE,CAwBtC;AA0ED,mFAAmF;AACnF,wBAAgB,oBAAoB,CAClC,KAAK,SAAK,EACV,IAAI,GAAE;IAAE,SAAS,CAAC,EAAE,MAAM,CAAA;CAAO,GAChC,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAC;IAAC,WAAW,EAAE,MAAM,CAAA;CAAE,CAAC,CAiB9E;AAED,qFAAqF;AACrF,wBAAgB,aAAa,CAAC,IAAI,GAAE;IAAE,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAA;CAAO,GAAG;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAA;CAAE,GAAG,IAAI,CAM3I;AAED,wFAAwF;AACxF,wBAAsB,YAAY,CAChC,IAAI,GAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GACxE,OAAO,CAAC;IAAE,KAAK,EAAE,OAAO,CAAC;IAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAK/E;AAkBD;;;;;;;;0BAQ0B;AAC1B,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,SAAI,GAAG,YAAY,EAAE,CA8CjF;AAyDD,sDAAsD;AACtD,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,YAAY,EAAE,CA+BtD;AA+CD;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAyBlD;AAED,qFAAqF;AACrF,wBAAsB,aAAa,CAAC,OAAO,EAAE,YAAY,EAAE,EAAE,MAAM,EAAE,aAAa,GAAG,OAAO,CAAC,UAAU,CAAC,CAwBvG;AAED,wBAAsB,aAAa,CACjC,SAAS,EAAE,MAAM,EACjB,IAAI,GAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GACpD,OAAO,CAAC;IAAE,SAAS,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAI9D;AAED,wBAAsB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GAAG,OAAO,CAAC;IAAE,IAAI,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAIjI;AAED,wBAAsB,YAAY,CAChC,GAAG,SAAkB,EACrB,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GACpC,OAAO,CAAC;IAAE,KAAK,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAsBzC"}