mcp-rag-memory 2.3.0 → 2.4.0

package/README.md

@@ -24,7 +24,7 @@ context **across sessions**.
 
 ```bash
 npm install
-npm test                 # 103 checks: unit + MCP round-trip via SDK client
+npm test                 # 114 checks: unit + MCP round-trip via SDK client
 npm run lint             # oxlint
 npm run build            # compile to dist/
 npm run cli -- stats     # CLI playground
@@ -278,6 +278,7 @@ npm run cli -- remember "deploys every Friday" --type task --importance 0.7
 npm run cli -- recall "deployment schedule"
 npm run cli -- ingest-dir ./src/rag
 npm run cli -- search "vector similarity"
+npm run cli -- search "auth bug" --source opencode-db   # filter by source or doc-id
 npm run cli -- mem-context "database"
 npm run cli -- sessions              # list recent opencode sessions
 npm run cli -- sync-session ses_123  # ingest one session's inputs
@@ -285,27 +286,41 @@ npm run cli -- sync-latest           # ingest the most recent session
 npm run clean-db -- --force          # wipe ALL documents + memories (destructive)
 ```
 
+`mcp-rag-memory` is also a global CLI. Install once (`npm i -g mcp-rag-memory`)
+and run `mcp-rag-memory-cli search "..."` anywhere; the CLI reads `<cwd>/.env`
+or `RAG_ENV_FILE` to locate its store, so one store per project is enough.
+
 Semua akses juga tersedia sebagai custom commands (`/remember`, `/recall`,
 `/search`, ...) dan sebagai MCP tools.
 
 ## Auto-save session inputs
 
-Every user input you type in opencode becomes searchable in the RAG store —
-new, untouched, friendly to your existing long-term memories. Three layers:
-
-1. **Plugin (real-time, debounced).** `.opencode/plugin/session-logger.ts`
-   watches message events and, at most once a minute, runs
-   `sync-latest` so the session you are typing in lands in the store.
-   Disable with `RAG_AUTOSYNC=0`.
+Every user **message** typed in opencode can be mirrored into the RAG store as
+small searchable documents (metadata `source: "opencode-db"`), kept separate
+from your curated long-term memories. Three layers:
+
+1. **Plugin (real-time, debounced, cross-workspace).**
+   `.opencode/plugin/session-logger.ts` watches message events and, at most
+   once a minute, runs the portable CLI — `npx -y mcp-rag-memory-cli
+   sync-latest --dir <workspace>` — so the session you are typing in lands in
+   the store. Because it invokes the published bin (not this repo's scripts),
+   it works in **any** project that adds the plugin and a `.env` pointing at
+   its store. Disable with `RAG_AUTOSYNC=0`.
 2. **CLI on demand.**
    ```bash
-   npm run sync-latest -- --dir "D:/Project/my-app"   # latest session in a workspace
-   npm run sync-session -- ses_abc123                  # a specific session
-   npm run sync-logs                                    # .session-logs/*.jsonl (custom logs)
+   npx -y mcp-rag-memory-cli sync-latest --dir "D:/Project/my-app"  # latest session in a workspace
+   npx -y mcp-rag-memory-cli sync-session ses_abc123                # a specific session
+   npx -y mcp-rag-memory-cli sync-logs                              # .session-logs/*.jsonl
    ```
 3. **MCP tool.** `rag_sync_session` exposes the same logic over MCP:
    `{ "session_id": "..." }` or `{ "directory": "..." }` for the latest.
 
+> Honest scope note: the **plugin** only ships with this repo out of the box,
+> but it is a plain node script — copy it into any workspace (and give that
+> project an `.env`) and auto-save just works, since it shells out to the
+> published `mcp-rag-memory-cli` via npx. Without a plugin, auto-save is
+> "manual": run layer 2 or call layer 3 whenever you want a session ingested.
+
 How it works: sessions are read from opencode's own DB
 (`~/.local/share/opencode/opencode.db` + `opencode-local.db`, override with
 `OPENCODE_DB` / `OPENCODE_DB_LOCAL`), each user message becomes one small
@@ -314,10 +329,24 @@ inputs are **condensed to key points** before storage (extractive, no LLM) so
 the store stays lean; short inputs are saved whole. Raw transcripts stay in
 opencode's DB; long-term **memories** are never mixed in. Re-runs are
 idempotent thanks to SHA-256 content-hash dedup (`metadata.condensed` marks
-reduced docs), so plugging this into any scheduler is safe.
+reduced docs), so plugging this into any scheduler is safe. A schema guard
+raises a clear error (instead of mysterious SQL failures) if your opencode DB
+layout changes to an unsupported shape.
 
 The plugin needs an opencode restart to take effect.
 
+## Performance & limits
+
+- **Search is brute-force cosine / FTS5 over every chunk**: `O(N)` per query
+  (exact, deterministic — good for a personal store of thousands of chunks).
+  ANN / HNSW indexing is planned scope (v3) for 100k+ chunks.
+- Keyword leg uses the FTS5 **trigram** tokenizer, so CJK text and
+  Indonesian-style substring/inflection matching work without extra config.
+  Consequence: keyword terms of **≤ 2 characters are skipped** (trigram needs
+  3); the vector leg still covers them.
+- Vector embeddings are local hash-based (no external APIs, ~0 cost, offline).
+  They are tuned for short-phrase similarity, not full-document semantics.
+
 ## Architecture
 
 ```

package/dist/cli.js

@@ -0,0 +1,221 @@
+#!/usr/bin/env node
+/**
+ * CLI for the RAG + Context Management engine.
+ *
+ * Usage:  npm run cli -- <command> [args]
+ *         npx mcp-rag-memory-cli <command> [args]
+ *
+ * Commands:
+ *   ingest-text  <title> <file|->              Ingest text (from file or stdin)
+ *   ingest-file  <path>                        Ingest a single file
+ *   ingest-dir   <dir>                         Ingest a directory
+ *   search       <query>                       Semantic search over documents
+ *   retrieve     <query>                       Retrieve context block
+ *   docs                                      List documents
+ *   doc-stats                                 Document stats
+ *   rm-doc       <doc_id>                      Delete a document
+ *   remember     <content> [--type fact] [--importance 0.5] [--tag x]
+ *   recall       <query>
+ *   memory-list  [--type fact] [--tag x]
+ *   memory-get   <id>
+ *   memory-update <id> [--content ...] [--importance 0.8] [--type fact] [--tag x]
+ *   forget       <id>
+ *   consolidate
+ *   memory-stats
+ *   mem-context  <topic>
+ *   stats                                       Everything
+ *   sessions                                    List opencode sessions (recent first)
+ *   sync-session <sessionId> [--limit N]        Ingest a session's user inputs to RAG
+ *   sync-latest   [--limit N] [--dir PATH]      Ingest the most recent session (workspace-aware)
+ *   sync-logs    [dir]                          Ingest .session-logs/*.jsonl to RAG
+ *   ingest-jsonl <file>                         Ingest one jsonl log file
+ */
+import "./env.js";
+import { ingestText, ingestFile, ingestDirectory, searchDocs, retrieve, listDocuments, deleteDocument, documentStats } from "./rag/pipeline.js";
+import { remember, recall, listMemories, getMemory, updateMemory, forget, consolidate, memoryStats, contextPrompt, MEMORY_TYPES } from "./memory/memory.js";
+import { ingestSession, ingestJsonlFile, ingestLogDir, ingestLatest, listOpenCodeSessions } from "./session/transcript.js";
+import { closeDB, STORAGE_DIR } from "./db/database.js";
+import * as fs from "fs";
+async function main() {
+    const [, , cmd, ...rest] = process.argv;
+    if (!cmd) {
+        console.error("Usage: npm run cli -- <command> ...");
+        console.error(helpText());
+        process.exit(1);
+    }
+    await run(cmd, rest);
+    closeDB();
+}
+function helpText() {
+    return `Commands: ingest-text|ingest-file|ingest-dir|search|retrieve|docs|doc-stats|rm-doc|remember|recall|memory-list|memory-get|memory-update|forget|consolidate|memory-stats|mem-context|stats|sessions|sync-session|sync-latest|sync-logs|ingest-jsonl`;
+}
+function assertMemoryType(type) {
+    if (!MEMORY_TYPES.includes(type)) {
+        throw new Error(`Invalid memory type "${type}". Valid: ${MEMORY_TYPES.join(", ")}`);
+    }
+}
+async function run(cmd, args) {
+    let out;
+    try {
+        switch (cmd) {
+            case "ingest-text": {
+                const [title, fileOrDash] = args;
+                const content = fileOrDash === "-" ? fs.readFileSync(0, "utf-8") : fs.readFileSync(fileOrDash, "utf-8");
+                out = await ingestText(content, title ?? fileOrDash ?? "untitled");
+                break;
+            }
+            case "ingest-file":
+                out = await ingestFile(args[0]);
+                break;
+            case "ingest-dir":
+                out = await ingestDirectory(args[0], { recursive: true });
+                break;
+            case "search": {
+                const parsed = parseOpts(args);
+                out = await searchDocs(parsed.positional.join(" "), undefined, undefined, {
+                    docId: parsed.opts["doc-id"],
+                    source: parsed.opts.source,
+                });
+                break;
+            }
+            case "retrieve": {
+                const parsed = parseOpts(args);
+                out = await retrieve(parsed.positional.join(" "), undefined, undefined, {
+                    docId: parsed.opts["doc-id"],
+                    source: parsed.opts.source,
+                });
+                break;
+            }
+            case "docs":
+                out = listDocuments();
+                break;
+            case "doc-stats":
+                out = documentStats();
+                break;
+            case "rm-doc":
+                out = deleteDocument(args[0]);
+                break;
+            case "remember": {
+                const parsed = parseOpts(args);
+                const type = parsed.opts.type ?? "fact";
+                assertMemoryType(type);
+                out = await remember({
+                    content: parsed.positional.join(" "),
+                    type,
+                    importance: parsed.opts.importance !== undefined ? Number(parsed.opts.importance) : 0.5,
+                    tags: parsed.opts.tag ? [parsed.opts.tag] : undefined,
+                });
+                break;
+            }
+            case "recall":
+                out = await recall(args.join(" "));
+                break;
+            case "memory-list": {
+                const parsed = parseOpts(args);
+                out = listMemories({
+                    type: parsed.opts.type,
+                    tag: parsed.opts.tag,
+                    minImportance: parsed.opts["min-importance"] !== undefined ? Number(parsed.opts["min-importance"]) : undefined,
+                });
+                break;
+            }
+            case "memory-get":
+                out = getMemory(args[0]);
+                break;
+            case "memory-update": {
+                const [id, ...restArgs] = args;
+                const parsed = parseOpts(restArgs);
+                const type = parsed.opts.type ?? "fact";
+                assertMemoryType(type);
+                out = await updateMemory(id, {
+                    content: parsed.opts.content && parsed.opts.content !== "true"
+                        ? parsed.opts.content
+                        : parsed.positional.length
+                            ? parsed.positional.join(" ")
+                            : undefined,
+                    importance: parsed.opts.importance !== undefined ? Number(parsed.opts.importance) : undefined,
+                    type,
+                    tags: parsed.opts.tag ? [parsed.opts.tag] : undefined,
+                });
+                break;
+            }
+            case "forget":
+                out = forget(args[0]);
+                break;
+            case "consolidate":
+                out = await consolidate();
+                break;
+            case "memory-stats":
+                out = memoryStats();
+                break;
+            case "mem-context":
+                out = await contextPrompt(args.join(" "));
+                break;
+            case "stats":
+                out = { documents: documentStats(), memories: memoryStats(), dbDir: STORAGE_DIR };
+                break;
+            case "sessions": {
+                const parsed = parseOpts(args);
+                out = listOpenCodeSessions(parsed.opts.limit ? Number(parsed.opts.limit) : 15);
+                break;
+            }
+            case "sync-session": {
+                const [id, ...restArgs] = args;
+                const parsed = parseOpts(restArgs);
+                if (!id)
+                    throw new Error("sync-session <sessionId> — run 'cli sessions' to list ids");
+                out = await ingestSession(id, { limit: parsed.opts.limit ? Number(parsed.opts.limit) : 0 });
+                break;
+            }
+            case "sync-latest": {
+                const parsed = parseOpts(args);
+                out = await ingestLatest({ limit: parsed.opts.limit ? Number(parsed.opts.limit) : 0, directory: parsed.opts.dir });
+                break;
+            }
+            case "sync-logs": {
+                const parsed = parseOpts(args);
+                out = await ingestLogDir(parsed.positional[0] ?? ".session-logs");
+                break;
+            }
+            case "ingest-jsonl":
+                out = await ingestJsonlFile(args[0]);
+                break;
+            default:
+                console.error(`Unknown command: ${cmd}`);
+                console.error(helpText());
+                process.exit(1);
+        }
+    }
+    catch (e) {
+        console.error(`Error: ${e.message}`);
+        process.exit(1);
+    }
+    console.log(JSON.stringify(out, null, 2));
+}
+function parseOpts(args) {
+    const positional = [];
+    const opts = {};
+    for (let i = 0; i < args.length; i++) {
+        const a = args[i];
+        if (a.startsWith("--")) {
+            const key = a.slice(2);
+            const next = args[i + 1];
+            if (next && !next.startsWith("--")) {
+                opts[key] = next;
+                i++;
+            }
+            else {
+                opts[key] = "true";
+            }
+        }
+        else {
+            positional.push(a);
+        }
+    }
+    return { positional, opts };
+}
+main().catch((e) => {
+    console.error(`Error: ${e.message}`);
+    process.exit(1);
+});
+//# sourceMappingURL=cli.js.map

package/dist/db/database.d.ts.map

@@ -1 +1 @@
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package/dist/db/database.js

@@ -78,11 +78,21 @@ function migrate(db) {
     }
     db.exec("CREATE UNIQUE INDEX IF NOT EXISTS idx_documents_content_hash ON documents(content_hash) WHERE content_hash IS NOT NULL;");
     // FTS5 full-text index over chunks for hybrid (BM25 + vector) search.
-    const hasFts = db
-        .prepare("SELECT name FROM sqlite_master WHERE type = 'table' AND name = 'chunks_fts'")
+    // 'trigram' tokenizer: indexes every 3-char window → good CJK recall and
+    // substring matching (helps inflected languages like Indonesian too). Short
+    // terms (<=2 chars) won't match the keyword leg — the vector leg covers them.
+    const ftsRow = db
+        .prepare("SELECT sql FROM sqlite_master WHERE type = 'table' AND name = 'chunks_fts'")
         .get();
-    if (!hasFts) {
-        db.exec("CREATE VIRTUAL TABLE chunks_fts USING fts5(content, tokenize = 'unicode61');");
+    if (!ftsRow) {
+        db.exec("CREATE VIRTUAL TABLE chunks_fts USING fts5(content, tokenize = 'trigram');");
+    }
+    else if (!ftsRow.sql.includes("trigram")) {
+        // Existing store built with 'unicode61' — recreate with trigram and backfill.
+        db.exec("DROP TABLE chunks_fts;");
+        db.exec("CREATE VIRTUAL TABLE chunks_fts USING fts5(content, tokenize = 'trigram');");
+        db.exec(`INSERT INTO chunks_fts(rowid, content)
+         SELECT rowid, content FROM chunks`);
     }
 }
 /** SHA-256 hex of raw content — used for document dedup. */

package/dist/db/database.js.map

@@ -1 +1 @@
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+{"version":3,"file":"database.js","sourceRoot":"","sources":["../../src/db/database.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC3C,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAC7B,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAErD,MAAM,CAAC,MAAM,WAAW,GAAG,OAAO,CAAC,GAAG,CAAC,UAAU;IAC/C,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC;IACtC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,WAAW,CAAC,CAAC;AAE7C,MAAM,CAAC,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,YAAY,CAAC,CAAC;AAE5D,IAAI,GAAG,GAAwB,IAAI,CAAC;AAEpC,SAAS,SAAS;IAChB,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC,EAAE,CAAC;QAChC,EAAE,CAAC,SAAS,CAAC,WAAW,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IACjD,CAAC;AACH,CAAC;AAED,MAAM,UAAU,KAAK;IACnB,IAAI,GAAG;QAAE,OAAO,GAAG,CAAC;IACpB,SAAS,EAAE,CAAC;IACZ,MAAM,EAAE,GAAG,IAAI,YAAY,CAAC,OAAO,CAAC,CAAC;IACrC,EAAE,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAC;IACtC,EAAE,CAAC,IAAI,CAAC,8BAA8B,CAAC,CAAC;IACxC,EAAE,CAAC,IAAI,CAAC,2BAA2B,CAAC,CAAC;IACrC,GAAG,GAAG,EAAE,CAAC;IACT,OAAO,CAAC,EAAE,CAAC,CAAC;IACZ,OAAO,EAAE,CAAC;AACZ,CAAC;AAED,SAAS,YAAY,CAAC,EAAgB,EAAE,KAAa,EAAE,MAAc;IACnE,MAAM,IAAI,GAAG,EAAE,CAAC,OAAO,CAAC,qBAAqB,KAAK,GAAG,CAAC,CAAC,GAAG,EAA6B,CAAC;IACxF,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,MAAM,CAAC,CAAC;AAC7C,CAAC;AAED,SAAS,OAAO,CAAC,EAAgB;IAC/B,EAAE,CAAC,IAAI,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA0CP,CAAC,CAAC;IAEH,2EAA2E;IAC3E,IAAI,CAAC,YAAY,CAAC,EAAE,EAAE,WAAW,EAAE,cAAc,CAAC,EAAE,CAAC;QACnD,EAAE,CAAC,IAAI,CAAC,qDAAqD,CAAC,CAAC;IACjE,CAAC;IACD,EAAE,CAAC,IAAI,CACL,yHAAyH,CAC1H,CAAC;IAEF,sEAAsE;IACtE,yEAAyE;IACzE,4EAA4E;IAC5E,8EAA8E;IAC9E,MAAM,MAAM,GAAG,EAAE;SACd,OAAO,CAAC,4EAA4E,CAAC;SACrF,GAAG,EAAkC,CAAC;IACzC,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,EAAE,CAAC,IAAI,CAAC,4EAA4E,CAAC,CAAC;IACxF,CAAC;SAAM,IAAI,CAAC,MAAM,CAAC,GAAI,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;QAC5C,8EAA8E;QAC9E,EAAE,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAC;QAClC,EAAE,CAAC,IAAI,CAAC,4EAA4E,CAAC,CAAC;QACtF,EAAE,CAAC,IAAI,CACL;2CACqC,CACtC,CAAC;IACJ,CAAC;AACH,CAAC;AAED,4DAA4D;AAC5D,MAAM,UAAU,WAAW,CAAC,OAAe;IACzC,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AACpE,CAAC;AAED,MAAM,UAAU,KAAK;IACnB,OAAO,UAAU,EAAE,CAAC;AACtB,CAAC;AAED,2DAA2D;AAC3D,MAAM,UAAU,UAAU,CAAC,CAAe;IACxC,OAAO,IAAI,UAAU,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;AAC3C,CAAC;AAED,mDAAmD;AACnD,MAAM,UAAU,YAAY,CAAC,IAAuB;IAClD,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,UAAU,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC;IAChD,OAAO,IAAI,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,UAAU,EAAE,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC;AACjG,CAAC;AAED,MAAM,UAAU,KAAK;IACnB,OAAO,IAAI,CAAC,GAAG,EAAE,CAAC;AACpB,CAAC;AAED,MAAM,UAAU,OAAO;IACrB,GAAG,EAAE,KAAK,EAAE,CAAC;IACb,GAAG,GAAG,IAAI,CAAC;AACb,CAAC;AAED,wEAAwE;AACxE,yEAAyE;AACzE,wEAAwE;AAExE,MAAM,UAAU,WAAW;IACzB,MAAM,CAAC,GAAG,KAAK,EAAE,CAAC,OAAO,CAAC,gDAAgD,CAAC,CAAC,GAAG,EAElE,CAAC;IACd,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AACjC,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,GAAW,EAAE,KAAa;IACrD,MAAM,EAAE,GAAG,KAAK,EAAE,CAAC;IACnB,EAAE,CAAC,OAAO,CACR,4GAA4G,CAC7G,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC;IACnB,EAAE,CAAC,OAAO,CACR,8GAA8G,CAC/G,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;AACf,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,SAAS,CAAC,GAAiB,EAAE,KAAa;IACxD,MAAM,OAAO,GAAG,WAAW,EAAE,CAAC;IAC9B,IAAI,OAAO,KAAK,CAAC,EAAE,CAAC;QAClB,YAAY,CAAC,GAAG,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;QAChC,OAAO;IACT,CAAC;IACD,IAAI,OAAO,KAAK,GAAG,CAAC,MAAM,EAAE,CAAC;QAC3B,MAAM,IAAI,KAAK,CACb,2CAA2C,OAAO,YAAY,aAAa,EAAE,KAAK;YAChF,mBAAmB,GAAG,CAAC,MAAM,YAAY,KAAK,KAAK;YACnD,+CAA+C,WAAW,GAAG,CAChE,CAAC;IACJ,CAAC;AACH,CAAC;AAED,MAAM,UAAU,aAAa;IAC3B,MAAM,CAAC,GAAG,KAAK,EAAE,CAAC,OAAO,CAAC,kDAAkD,CAAC,CAAC,GAAG,EAEpE,CAAC;IACd,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;AAC1B,CAAC"}

package/dist/env.js

@@ -9,7 +9,7 @@
  */
 import * as fs from "fs";
 import * as path from "path";
-function loadDotenv(file) {
+export function loadDotenv(file) {
     let raw;
     try {
         raw = fs.readFileSync(file, "utf8");

package/dist/mcp/rag-server.js

@@ -81,9 +81,14 @@ server.registerTool("rag_search", {
         query: z.string().min(1),
         top_k: z.number().int().min(1).max(50).optional().default(10),
         min_score: z.number().min(0).max(1).optional().default(0.08),
+        doc_id: z.string().optional().describe("Only search within this document"),
+        source: z.string().optional().describe("Only search documents with this source (e.g. 'opencode-db', 'session-log')"),
     },
 }, async (args) => {
-    const hits = await searchDocs(args.query, args.top_k ?? 10, args.min_score ?? 0.08);
+    const hits = await searchDocs(args.query, args.top_k ?? 10, args.min_score ?? 0.08, {
+        docId: args.doc_id,
+        source: args.source,
+    });
     return {
         content: [{ type: "text", text: JSON.stringify(hits, null, 2) }],
     };
@@ -94,9 +99,14 @@ server.registerTool("rag_retrieve", {
         query: z.string().min(1),
         top_k: z.number().int().min(1).max(20).optional().default(6),
         min_score: z.number().min(0).max(1).optional().default(0.08),
+        doc_id: z.string().optional().describe("Only retrieve within this document"),
+        source: z.string().optional().describe("Only retrieve documents with this source"),
     },
 }, async (args) => {
-    const res = await retrieve(args.query, args.top_k ?? 6, args.min_score ?? 0.08);
+    const res = await retrieve(args.query, args.top_k ?? 6, args.min_score ?? 0.08, {
+        docId: args.doc_id,
+        source: args.source,
+    });
     if (res.chunks.length === 0) {
         return { content: [{ type: "text", text: "No relevant context found." }] };
     }

package/dist/mcp/rag-server.js.map

@@ -1 +1 @@
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package/dist/memory/memory.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"memory.d.ts","sourceRoot":"","sources":["../../src/memory/memory.ts"],"names":[],"mappings":"AAMA,eAAO,MAAM,YAAY,+FAQf,CAAC;AAEX,MAAM,MAAM,UAAU,GAAG,CAAC,OAAO,YAAY,CAAC,CAAC,MAAM,CAAC,CAAC;AAKvD,MAAM,WAAW,WAAW;IAC1B,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,UAAU,CAAC;IAClB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;CACjB;AAED,MAAM,WAAW,YAAY;IAC3B,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,UAAU,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;IACnB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,GAAG,IAAI,CAAC;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,eAAgB,SAAQ,YAAY;IACnD,KAAK,EAAE,MAAM,CAAC;IACd,yFAAyF;IACzF,KAAK,EAAE,MAAM,CAAC;CACf;AAED,wBAAsB,QAAQ,CAAC,KAAK,EAAE,WAAW,GAAG,OAAO,CAAC,YAAY,CAAC,CAgBxE;AAED,wBAAsB,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,SAAI,EAAE,QAAQ,SAAM,GAAG,OAAO,CAAC,eAAe,EAAE,CAAC,CAwBhG;AAED,wBAAgB,YAAY,CAAC,IAAI,GAAE;IAAE,IAAI,CAAC,EAAE,UAAU,CAAC;IAAC,GAAG,CAAC,EAAE,MAAM,CAAC;IAAC,aAAa,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAO,GAAG,YAAY,EAAE,CAyBnI;AAED,wBAAgB,SAAS,CAAC,EAAE,EAAE,MAAM,GAAG,YAAY,GAAG,IAAI,CA6BzD;AAED,wBAAsB,YAAY,CAChC,EAAE,EAAE,MAAM,EACV,KAAK,EAAE;IAAE,OAAO,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,UAAU,CAAC;IAAC,UAAU,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,EAAE,CAAA;CAAE,GACnF,OAAO,CAAC,YAAY,GAAG,IAAI,CAAC,CAkB9B;AAED,wBAAgB,MAAM,CAAC,EAAE,EAAE,MAAM,GAAG;IAAE,OAAO,EAAE,OAAO,CAAA;CAAE,CAKvD;AAED,MAAM,WAAW,mBAAmB;IAClC,iBAAiB,EAAE,MAAM,CAAC;IAC1B,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;CAC9C;AAED;;;;;GAKG;AACH,wBAAsB,WAAW,IAAI,OAAO,CAAC,mBAAmB,CAAC,CA4EhE;AAED,wBAAgB,WAAW,IAAI;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,aAAa,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;CAAE,CAczH;AAED,wBAAsB,aAAa,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,SAAI,GAAG,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,eAAe,EAAE,CAAA;CAAE,CAAC,CAKrH"}

package/dist/memory/memory.js

@@ -127,9 +127,12 @@ export async function consolidate() {
     const records = rows
         .map((r) => ({ id: r.id, rec: getMemory(r.id) }))
         .filter((r) => r.rec !== null && r.rec !== undefined);
+    const recordsById = new Map(records.map((r) => [r.id, r.rec]));
     const vectors = [];
-    for (const r of records) {
-        const vec = unpackVector(rows.find((row) => row.id === r.id)?.embedding ?? null);
+    for (const r of rows) {
+        if (!recordsById.has(r.id))
+            continue;
+        const vec = unpackVector(r.embedding);
         if (vec)
             vectors.push({ id: r.id, vec });
     }
@@ -143,8 +146,8 @@ export async function consolidate() {
                 continue;
             const sim = dotProduct(vectors[i].vec, vectors[j].vec);
             if (sim >= 0.92) {
-                const a = records.find((r) => r.id === vectors[i].id).rec;
-                const b = records.find((r) => r.id === vectors[j].id).rec;
+                const a = recordsById.get(vectors[i].id);
+                const b = recordsById.get(vectors[j].id);
                 if (a.importance >= b.importance) {
                     toDelete.add(vectors[j].id);
                 }

package/dist/memory/memory.js.map

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package/dist/rag/pipeline.d.ts

@@ -1,5 +1,10 @@
 import { vectorSearch, invalidateVectorCache } from "./vector-search.js";
-import type { SearchHit } from "./vector-search.js";
+import type { SearchHit, SearchChunkFilters } from "./vector-search.js";
+export interface SearchOptions {
+    topK?: number;
+    minScore?: number;
+    filters?: SearchChunkFilters;
+}
 export interface IngestResult {
     docId: string;
     title: string;
@@ -33,8 +38,8 @@ export declare function ingestDirectory(dirPath: string, opts?: IngestDirectoryO
     ingested: IngestResult[];
     skipped: string[];
 }>;
-export declare function searchDocs(query: string, topK?: number, minScore?: number): Promise<SearchHit[]>;
-export declare function retrieve(query: string, topK?: number, minScore?: number): Promise<RetrievedContext>;
+export declare function searchDocs(query: string, topK?: number, minScore?: number, filters?: SearchChunkFilters): Promise<SearchHit[]>;
+export declare function retrieve(query: string, topK?: number, minScore?: number, filters?: SearchChunkFilters): Promise<RetrievedContext>;
 export declare function listDocuments(): Array<Record<string, unknown>>;
 export declare function deleteDocument(docId: string): {
     deleted: boolean;

package/dist/rag/pipeline.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pipeline.d.ts","sourceRoot":"","sources":["../../src/rag/pipeline.ts"],"names":[],"mappings":"AAKA,OAAO,EAAgB,YAAY,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC;AACvF,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAEpD,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,MAAM,CAAC;IACf,YAAY,EAAE,OAAO,CAAC;CACvB;AAED,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,KAAK,CAAC;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAC5G,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,iBAAiB;IAChC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACpC;AAED,MAAM,WAAW,sBAAsB;IACrC,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACpC;AAWD,wBAAsB,UAAU,CAC9B,OAAO,EAAE,MAAM,EACf,KAAK,EAAE,MAAM,EACb,IAAI,GAAE,iBAAsB,GAC3B,OAAO,CAAC,YAAY,CAAC,CAsDvB;AAgBD,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,GAAE,iBAAsB,GAAG,OAAO,CAAC,YAAY,CAAC,CAsBtG;AAOD,wBAAsB,eAAe,CACnC,OAAO,EAAE,MAAM,EACf,IAAI,GAAE,sBAA2B,GAChC,OAAO,CAAC;IAAE,QAAQ,EAAE,YAAY,EAAE,CAAC;IAAC,OAAO,EAAE,MAAM,EAAE,CAAA;CAAE,CAAC,CAoC1D;AAED,wBAAsB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,SAAK,EAAE,QAAQ,SAAO,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CAGhG;AAED,wBAAsB,QAAQ,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,SAAI,EAAE,QAAQ,SAAO,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAalG;AAED,wBAAgB,aAAa,IAAI,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAQ9D;AAED,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG;IAAE,OAAO,EAAE,OAAO,CAAA;CAAE,CAMlE;AAED,wBAAgB,aAAa,IAAI;IAAE,SAAS,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAMrF;AAYD,6DAA6D;AAC7D,OAAO,EAAE,YAAY,EAAE,qBAAqB,EAAE,CAAC"}
+{"version":3,"file":"pipeline.d.ts","sourceRoot":"","sources":["../../src/rag/pipeline.ts"],"names":[],"mappings":"AAKA,OAAO,EAAgB,YAAY,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC;AACvF,OAAO,KAAK,EAAE,SAAS,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAExE,MAAM,WAAW,aAAa;IAC5B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,kBAAkB,CAAC;CAC9B;AAED,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,MAAM,CAAC;IACf,YAAY,EAAE,OAAO,CAAC;CACvB;AAED,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,KAAK,CAAC;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAC5G,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,iBAAiB;IAChC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACpC;AAED,MAAM,WAAW,sBAAsB;IACrC,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACpC;AAWD,wBAAsB,UAAU,CAC9B,OAAO,EAAE,MAAM,EACf,KAAK,EAAE,MAAM,EACb,IAAI,GAAE,iBAAsB,GAC3B,OAAO,CAAC,YAAY,CAAC,CAsDvB;AAgBD,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,GAAE,iBAAsB,GAAG,OAAO,CAAC,YAAY,CAAC,CAsBtG;AAOD,wBAAsB,eAAe,CACnC,OAAO,EAAE,MAAM,EACf,IAAI,GAAE,sBAA2B,GAChC,OAAO,CAAC;IAAE,QAAQ,EAAE,YAAY,EAAE,CAAC;IAAC,OAAO,EAAE,MAAM,EAAE,CAAA;CAAE,CAAC,CAoC1D;AAED,wBAAsB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,SAAK,EAAE,QAAQ,SAAO,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,OAAO,CAAC,SAAS,EAAE,CAAC,CAG9H;AAED,wBAAsB,QAAQ,CAC5B,KAAK,EAAE,MAAM,EACb,IAAI,SAAI,EACR,QAAQ,SAAO,EACf,OAAO,CAAC,EAAE,kBAAkB,GAC3B,OAAO,CAAC,gBAAgB,CAAC,CAa3B;AAED,wBAAgB,aAAa,IAAI,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAQ9D;AAED,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG;IAAE,OAAO,EAAE,OAAO,CAAA;CAAE,CAMlE;AAED,wBAAgB,aAAa,IAAI;IAAE,SAAS,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAMrF;AAYD,6DAA6D;AAC7D,OAAO,EAAE,YAAY,EAAE,qBAAqB,EAAE,CAAC"}

package/dist/rag/pipeline.js

@@ -128,12 +128,12 @@ export async function ingestDirectory(dirPath, opts = {}) {
     }
     return { ingested, skipped };
 }
-export async function searchDocs(query, topK = 10, minScore = 0.08) {
+export async function searchDocs(query, topK = 10, minScore = 0.08, filters) {
     const q = await embedText(query);
-    return searchChunks(q, { queryText: query, topK, minScore });
+    return searchChunks(q, { queryText: query, topK, minScore, filters });
 }
-export async function retrieve(query, topK = 6, minScore = 0.08) {
-    const hits = await searchDocs(query, topK, minScore);
+export async function retrieve(query, topK = 6, minScore = 0.08, filters) {
+    const hits = await searchDocs(query, topK, minScore, filters);
     const withTokens = hits.map((h) => ({
         docTitle: h.docTitle,
         chunkIndex: h.chunkIndex,

package/dist/rag/pipeline.js.map

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package/dist/rag/vector-search.d.ts

@@ -26,10 +26,15 @@ export declare function vectorSearch(queryVec: Float64Array, options?: SearchOpt
     key: string;
     score: number;
 }>;
+export interface SearchChunkFilters {
+    docId?: string;
+    source?: string;
+}
 export interface SearchChunkOptions {
     queryText?: string;
     topK: number;
     minScore: number;
+    filters?: SearchChunkFilters;
 }
 /**
  * Hybrid search: FTS5 BM25 keyword + vector, fused with RRF.

package/dist/rag/vector-search.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"vector-search.d.ts","sourceRoot":"","sources":["../../src/rag/vector-search.ts"],"names":[],"mappings":"AAGA,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;IACZ,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,UAAU,GAAG,IAAI,CAAC;IAC7B,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,aAAa;IAC5B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,UAAU,CAAC,EAAE,QAAQ,GAAG,UAAU,CAAC;CACpC;AAeD,wBAAgB,qBAAqB,IAAI,IAAI,CAG5C;AAuCD,gFAAgF;AAChF,wBAAgB,YAAY,CAC1B,QAAQ,EAAE,YAAY,EACtB,OAAO,GAAE,aAAkB,GAC1B,KAAK,CAAC;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAcvC;AA0CD,MAAM,WAAW,kBAAkB;IACjC,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED;;;GAGG;AACH,wBAAgB,YAAY,CAAC,QAAQ,EAAE,YAAY,EAAE,IAAI,EAAE,kBAAkB,GAAG,SAAS,EAAE,CA8D1F"}
+{"version":3,"file":"vector-search.d.ts","sourceRoot":"","sources":["../../src/rag/vector-search.ts"],"names":[],"mappings":"AAGA,MAAM,WAAW,QAAQ;IACvB,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;IACZ,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,UAAU,GAAG,IAAI,CAAC;IAC7B,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,aAAa;IAC5B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,UAAU,CAAC,EAAE,QAAQ,GAAG,UAAU,CAAC;CACpC;AAeD,wBAAgB,qBAAqB,IAAI,IAAI,CAG5C;AAuCD,gFAAgF;AAChF,wBAAgB,YAAY,CAC1B,QAAQ,EAAE,YAAY,EACtB,OAAO,GAAE,aAAkB,GAC1B,KAAK,CAAC;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAcvC;AA0CD,MAAM,WAAW,kBAAkB;IACjC,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,kBAAkB;IACjC,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,CAAC,EAAE,kBAAkB,CAAC;CAC9B;AAED;;;GAGG;AACH,wBAAgB,YAAY,CAAC,QAAQ,EAAE,YAAY,EAAE,IAAI,EAAE,kBAAkB,GAAG,SAAS,EAAE,CAkF1F"}

package/dist/rag/vector-search.js

@@ -108,7 +108,7 @@ function rrfMerge(lists) {
  * Controlled by SEARCH_MODE=hybrid|vector|keyword (default hybrid).
  */
 export function searchChunks(queryVec, opts) {
-    const { queryText = "", topK, minScore } = opts;
+    const { queryText = "", topK, minScore, filters } = opts;
     const db = getDB();
     const cap = Math.max(topK * 2, LIST_CAP);
     let vectorHits = [];
@@ -133,6 +133,25 @@ export function searchChunks(queryVec, opts) {
             .sort((a, b) => b.score - a.score)
             .slice(0, topK);
     }
+    // Narrow ranked results to matching documents (docId and/or source).
+    if (filters && (filters.docId || filters.source)) {
+        const idPlaceholders = finalIds.map(() => "?").join(", ");
+        const clauses = [`c.id IN (${idPlaceholders})`];
+        const params = finalIds.map((f) => f.key);
+        if (filters.docId) {
+            clauses.push("c.doc_id = ?");
+            params.push(filters.docId);
+        }
+        if (filters.source) {
+            clauses.push("d.source = ?");
+            params.push(filters.source);
+        }
+        const allowed = db
+            .prepare(`SELECT c.id FROM chunks c JOIN documents d ON d.id = c.doc_id WHERE ${clauses.join(" AND ")}`)
+            .all(...params);
+        const allowedSet = new Set(allowed.map((r) => r.id));
+        finalIds = finalIds.filter((f) => allowedSet.has(f.key));
+    }
     if (finalIds.length === 0)
         return [];
     const ids = finalIds.map((f) => f.key);

package/dist/rag/vector-search.js.map

@@ -1 +1 @@
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@@ -1 +1 @@
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+{"version":3,"file":"transcript.d.ts","sourceRoot":"","sources":["../../src/session/transcript.ts"],"names":[],"mappings":"AAkBA,MAAM,WAAW,YAAY;IAC3B,SAAS,EAAE,MAAM,CAAC;IAClB,EAAE,EAAE,MAAM,CAAC;IACX,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,UAAU;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,YAAY,EAAE,MAAM,CAAC;IACrB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,MAAM,aAAa,GAAG,aAAa,GAAG,aAAa,CAAC;AAE1D,kFAAkF;AAClF,eAAO,MAAM,WAAW,EAAE,MACwE,CAAC;AAEnG,8EAA8E;AAC9E,eAAO,MAAM,iBAAiB,EAAE,MAC8E,CAAC;AAE/G,wBAAgB,WAAW,IAAI,MAAM,EAAE,CAEtC;AAkED,mFAAmF;AACnF,wBAAgB,oBAAoB,CAClC,KAAK,SAAK,EACV,IAAI,GAAE;IAAE,SAAS,CAAC,EAAE,MAAM,CAAA;CAAO,GAChC,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAC;IAAC,WAAW,EAAE,MAAM,CAAA;CAAE,CAAC,CAiB9E;AAED,qFAAqF;AACrF,wBAAgB,aAAa,CAAC,IAAI,GAAE;IAAE,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAA;CAAO,GAAG;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAA;CAAE,GAAG,IAAI,CAM3I;AAED,wFAAwF;AACxF,wBAAsB,YAAY,CAChC,IAAI,GAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GACxE,OAAO,CAAC;IAAE,KAAK,EAAE,OAAO,CAAC;IAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAK/E;AAED,8DAA8D;AAC9D,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,SAAI,GAAG,YAAY,EAAE,CAkCjF;AAED,sDAAsD;AACtD,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,YAAY,EAAE,CAsBtD;AA+CD;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAyBlD;AAED,qFAAqF;AACrF,wBAAsB,aAAa,CAAC,OAAO,EAAE,YAAY,EAAE,EAAE,MAAM,EAAE,aAAa,GAAG,OAAO,CAAC,UAAU,CAAC,CAoBvG;AAED,wBAAsB,aAAa,CACjC,SAAS,EAAE,MAAM,EACjB,IAAI,GAAE;IAAE,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GACpD,OAAO,CAAC;IAAE,SAAS,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAI9D;AAED,wBAAsB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GAAG,OAAO,CAAC;IAAE,IAAI,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAIjI;AAED,wBAAsB,YAAY,CAChC,GAAG,SAAkB,EACrB,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,aAAa,CAAA;CAAO,GACpC,OAAO,CAAC;IAAE,KAAK,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAAC,CAsBzC"}

package/dist/session/transcript.js

@@ -29,12 +29,39 @@ function dbMatches(directory) {
     const dir = directory ? normalizeDir(directory) : null;
     return (r) => !dir || (!!r.directory && normalizeDir(r.directory) === dir);
 }
+/** Column names present on a table (PRAGMA table_info), as a Set. */
+function tableColumns(db, table) {
+    try {
+        const rows = db.prepare(`PRAGMA table_info(${table})`).all();
+        return new Set(rows.map((r) => r.name));
+    }
+    catch {
+        return new Set();
+    }
+}
+function assertOpencodeSchema(db, table, required) {
+    const cols = tableColumns(db, table);
+    if (cols.size === 0) {
+        throw new Error(`opencode DB schema changed: table "${table}" not found. ` +
+            "This version of mcp-rag-memory expects the opencode schema; " +
+            "update the package or pin OPENCODE_DB to a compatible opencode version.");
+    }
+    const missing = required.filter((c) => !cols.has(c));
+    if (missing.length > 0) {
+        throw new Error(`opencode DB schema changed: table "${table}" is missing columns ${missing.join(", ")}. ` +
+            "Update mcp-rag-memory to a version matching your opencode.");
+    }
+}
 function querySessions(dbPath, limit) {
     const db = new DatabaseSync(dbPath, { readOnly: true });
     try {
+        assertOpencodeSchema(db, "session", ["id", "directory", "time_updated"]);
+        const cols = tableColumns(db, "session");
+        const archiveClause = cols.has("time_archived") ? "time_archived IS NULL AND" : "";
+        const parentClause = cols.has("parent_id") ? "parent_id IS NULL AND" : "";
         const rows = db
             .prepare(`SELECT id, title, directory, time_updated FROM session
-          WHERE time_archived IS NULL AND parent_id IS NULL
+          WHERE ${archiveClause} ${parentClause} title IS NOT NULL
           ORDER BY time_updated DESC LIMIT ?`)
             .all(limit);
         return rows.map((r) => ({ ...r, title: r.title ?? "", directory: r.directory ?? "" }));
@@ -86,6 +113,8 @@ export function getSessionTranscript(sessionId, limit = 0) {
     const db = new DatabaseSync(OPENCODE_DB, { readOnly: true });
     const entries = [];
     try {
+        assertOpencodeSchema(db, "message", ["id", "session_id", "time_created", "data"]);
+        assertOpencodeSchema(db, "part", ["message_id", "data"]);
         const msgs = db
             .prepare(`SELECT id, time_created, data FROM message
           WHERE session_id = ? AND json_extract(data, '$.role') = 'user'

package/dist/session/transcript.js.map

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package/package.json

@@ -1,16 +1,18 @@
 {
   "name": "mcp-rag-memory",
-  "version": "2.3.0",
+  "version": "2.4.0",
   "description": "RAG + Context Management MCP server: long-term memory, vector storage, knowledge retrieval. Run with npx, zero external APIs.",
   "type": "module",
   "engines": {
     "node": ">=22.5.0"
   },
   "bin": {
-    "mcp-rag-memory": "dist/index.js"
+    "mcp-rag-memory": "dist/index.js",
+    "mcp-rag-memory-cli": "dist/cli.js"
   },
   "files": [
     "dist/index.js",
+    "dist/cli.js",
     "dist/env.js",
     "dist/mcp",
     "dist/db",
@@ -42,6 +44,14 @@
     "context-management",
     "node"
   ],
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/adyoi/mcp-rag-memory.git"
+  },
+  "bugs": {
+    "url": "https://github.com/adyoi/mcp-rag-memory/issues"
+  },
+  "homepage": "https://github.com/adyoi/mcp-rag-memory#readme",
   "license": "MIT",
   "dependencies": {
     "@modelcontextprotocol/sdk": "^1.0.0",