mcp-mongo-server 1.1.2 → 1.3.0

package/build/index.js

@@ -1,1023 +1,18 @@
 #!/usr/bin/env node
-/**
- * This is an MCP server that implements a MongoDB interface.
- * It demonstrates core MCP concepts by allowing:
- * - Listing collections as resources
- * - Reading collection schemas and contents
- * - Executing MongoDB queries via tools
- * - Providing collection summaries via prompts
- */
-import { Server } from "@modelcontextprotocol/sdk/server/index.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
-import { CallToolRequestSchema, ListResourcesRequestSchema, ListToolsRequestSchema, ReadResourceRequestSchema, ListPromptsRequestSchema, GetPromptRequestSchema, ListResourceTemplatesRequestSchema, PingRequestSchema, } from "@modelcontextprotocol/sdk/types.js";
-import { MongoClient, ReadPreference } from "mongodb";
-/**
- * MongoDB connection client and database reference
- */
-let client = null;
-let db = null;
-/**
- * Flag indicating whether the connection is in read-only mode
- */
-let isReadOnlyMode = false;
-/**
- * Create an MCP server with capabilities for resources (to list/read collections),
- * tools (to query data), and prompts (to analyze collections).
- */
-const server = new Server({
-    name: "mongodb",
-    version: "1.1.2",
-}, {
-    capabilities: {
-        resources: {},
-        tools: {},
-        prompts: {},
-    },
-});
-/**
- * Initialize MongoDB connection
- */
-async function connectToMongoDB(url, readOnly = false) {
-    try {
-        const options = readOnly
-            ? { readPreference: ReadPreference.SECONDARY }
-            : {};
-        client = new MongoClient(url, options);
-        await client.connect();
-        db = client.db();
-        isReadOnlyMode = readOnly;
-        return true;
-    }
-    catch (error) {
-        console.error("Failed to connect to MongoDB:", error);
-        return false;
-    }
-}
-/**
- * Handler for ping requests to check server health
- */
-server.setRequestHandler(PingRequestSchema, async () => {
-    try {
-        // Check MongoDB connection
-        if (!client) {
-            throw new Error("MongoDB connection is not available");
-        }
-        // Ping MongoDB to verify connection
-        await db.command({ ping: 1 });
-        return {
-            readOnlyMode: isReadOnlyMode,
-        };
-    }
-    catch (error) {
-        if (error instanceof Error) {
-            throw new Error(`MongoDB ping failed: ${error.message}`);
-        }
-        throw new Error("MongoDB ping failed: Unknown error");
-    }
-});
-/**
- * Handler for listing available collections as resources.
- * Each collection is exposed as a resource with:
- * - A mongodb:// URI scheme
- * - JSON MIME type
- * - Collection name and description
- */
-server.setRequestHandler(ListResourcesRequestSchema, async () => {
-    try {
-        const collections = await db.listCollections().toArray();
-        return {
-            resources: collections.map((collection) => ({
-                uri: `mongodb:///${collection.name}`,
-                mimeType: "application/json",
-                name: collection.name,
-                description: `MongoDB collection: ${collection.name}`,
-            })),
-        };
-    }
-    catch (error) {
-        if (error instanceof Error) {
-            throw new Error(`Failed to list collections: ${error.message}`);
-        }
-        throw new Error("Failed to list collections: Unknown error");
-    }
-});
-/**
- * Handler for reading a collection's schema or contents.
- * Takes a mongodb:// URI and returns the collection info as JSON.
- */
-server.setRequestHandler(ReadResourceRequestSchema, async (request) => {
-    const url = new URL(request.params.uri);
-    const collectionName = url.pathname.replace(/^\//, "");
-    try {
-        const collection = db.collection(collectionName);
-        const sample = await collection.findOne({});
-        const indexes = await collection.indexes();
-        // Infer schema from sample document
-        const schema = sample
-            ? {
-                type: "collection",
-                name: collectionName,
-                fields: Object.entries(sample).map(([key, value]) => ({
-                    name: key,
-                    type: typeof value,
-                })),
-                indexes: indexes.map((idx) => ({
-                    name: idx.name,
-                    keys: idx.key,
-                })),
-            }
-            : {
-                type: "collection",
-                name: collectionName,
-                fields: [],
-                indexes: [],
-            };
-        return {
-            contents: [
-                {
-                    uri: request.params.uri,
-                    mimeType: "application/json",
-                    text: JSON.stringify(schema, null, 2),
-                },
-            ],
-        };
-    }
-    catch (error) {
-        if (error instanceof Error) {
-            throw new Error(`Failed to read collection ${collectionName}: ${error.message}`);
-        }
-        throw new Error(`Failed to read collection ${collectionName}: Unknown error`);
-    }
-});
-/**
- * Handler that lists available tools.
- * Exposes MongoDB query tools for interacting with collections.
- */
-server.setRequestHandler(ListToolsRequestSchema, async () => {
-    return {
-        tools: [
-            {
-                name: "query",
-                description: "Execute a MongoDB query with optional execution plan analysis",
-                inputSchema: {
-                    type: "object",
-                    properties: {
-                        collection: {
-                            type: "string",
-                            description: "Name of the collection to query",
-                        },
-                        filter: {
-                            type: "object",
-                            description: "MongoDB query filter",
-                        },
-                        projection: {
-                            type: "object",
-                            description: "Fields to include/exclude",
-                        },
-                        limit: {
-                            type: "number",
-                            description: "Maximum number of documents to return",
-                        },
-                        explain: {
-                            type: "string",
-                            description: "Optional: Get query execution information (queryPlanner, executionStats, or allPlansExecution)",
-                            enum: ["queryPlanner", "executionStats", "allPlansExecution"],
-                        },
-                    },
-                    required: ["collection"],
-                },
-            },
-            {
-                name: "aggregate",
-                description: "Execute a MongoDB aggregation pipeline with optional execution plan analysis",
-                inputSchema: {
-                    type: "object",
-                    properties: {
-                        collection: {
-                            type: "string",
-                            description: "Name of the collection to aggregate",
-                        },
-                        pipeline: {
-                            type: "array",
-                            description: "Aggregation pipeline stages",
-                        },
-                        explain: {
-                            type: "string",
-                            description: "Optional: Get aggregation execution information (queryPlanner, executionStats, or allPlansExecution)",
-                            enum: ["queryPlanner", "executionStats", "allPlansExecution"],
-                        },
-                    },
-                    required: ["collection", "pipeline"],
-                },
-            },
-            {
-                name: "update",
-                description: "Update documents in a MongoDB collection",
-                inputSchema: {
-                    type: "object",
-                    properties: {
-                        collection: {
-                            type: "string",
-                            description: "Name of the collection to update",
-                        },
-                        filter: {
-                            type: "object",
-                            description: "Filter to select documents to update",
-                        },
-                        update: {
-                            type: "object",
-                            description: "Update operations to apply ($set, $unset, $inc, etc.)",
-                        },
-                        upsert: {
-                            type: "boolean",
-                            description: "Create a new document if no documents match the filter",
-                        },
-                        multi: {
-                            type: "boolean",
-                            description: "Update multiple documents that match the filter",
-                        },
-                    },
-                    required: ["collection", "filter", "update"],
-                },
-            },
-            {
-                name: "serverInfo",
-                description: "Get MongoDB server information including version, storage engine, and other details",
-                inputSchema: {
-                    type: "object",
-                    properties: {
-                        includeDebugInfo: {
-                            type: "boolean",
-                            description: "Include additional debug information about the server",
-                        },
-                    },
-                },
-            },
-            {
-                name: "insert",
-                description: "Insert one or more documents into a MongoDB collection",
-                inputSchema: {
-                    type: "object",
-                    properties: {
-                        collection: {
-                            type: "string",
-                            description: "Name of the collection to insert into",
-                        },
-                        documents: {
-                            type: "array",
-                            description: "Array of documents to insert",
-                            items: {
-                                type: "object",
-                            },
-                        },
-                        ordered: {
-                            type: "boolean",
-                            description: "Optional: If true, perform an ordered insert of the documents. If false, perform an unordered insert",
-                        },
-                        writeConcern: {
-                            type: "object",
-                            description: "Optional: Write concern for the insert operation",
-                        },
-                        bypassDocumentValidation: {
-                            type: "boolean",
-                            description: "Optional: Allow insert to bypass schema validation",
-                        },
-                    },
-                    required: ["collection", "documents"],
-                },
-            },
-            {
-                name: "createIndex",
-                description: "Create one or more indexes on a MongoDB collection",
-                inputSchema: {
-                    type: "object",
-                    properties: {
-                        collection: {
-                            type: "string",
-                            description: "Name of the collection to create indexes on",
-                        },
-                        indexes: {
-                            type: "array",
-                            description: "Array of index specifications",
-                            items: {
-                                type: "object",
-                                properties: {
-                                    key: {
-                                        type: "object",
-                                        description: "Index key pattern, e.g. { field: 1 } for ascending, { field: -1 } for descending",
-                                    },
-                                    name: {
-                                        type: "string",
-                                        description: "Optional: Name of the index",
-                                    },
-                                    unique: {
-                                        type: "boolean",
-                                        description: "Optional: If true, creates a unique index",
-                                    },
-                                    sparse: {
-                                        type: "boolean",
-                                        description: "Optional: If true, creates a sparse index",
-                                    },
-                                    background: {
-                                        type: "boolean",
-                                        description: "Optional: If true, creates the index in the background",
-                                    },
-                                    expireAfterSeconds: {
-                                        type: "number",
-                                        description: "Optional: Specifies the TTL for documents (time to live)",
-                                    },
-                                    partialFilterExpression: {
-                                        type: "object",
-                                        description: "Optional: Filter expression for partial indexes",
-                                    },
-                                },
-                                required: ["key"],
-                            },
-                        },
-                        writeConcern: {
-                            type: "object",
-                            description: "Optional: Write concern for the index creation",
-                        },
-                        commitQuorum: {
-                            type: ["string", "number"],
-                            description: "Optional: Number of voting members required to create index",
-                        },
-                    },
-                    required: ["collection", "indexes"],
-                },
-            },
-            {
-                name: "count",
-                description: "Count the number of documents in a collection that match a query",
-                inputSchema: {
-                    type: "object",
-                    properties: {
-                        collection: {
-                            type: "string",
-                            description: "Name of the collection to count documents in",
-                        },
-                        query: {
-                            type: "object",
-                            description: "Optional: Query filter to select documents to count",
-                        },
-                        limit: {
-                            type: "integer",
-                            description: "Optional: Maximum number of documents to count",
-                        },
-                        skip: {
-                            type: "integer",
-                            description: "Optional: Number of documents to skip before counting",
-                        },
-                        hint: {
-                            type: "object",
-                            description: "Optional: Index hint to force query plan",
-                        },
-                        readConcern: {
-                            type: "object",
-                            description: "Optional: Read concern for the count operation",
-                        },
-                        maxTimeMS: {
-                            type: "integer",
-                            description: "Optional: Maximum time to allow the count to run",
-                        },
-                        collation: {
-                            type: "object",
-                            description: "Optional: Collation rules for string comparison",
-                        },
-                    },
-                    required: ["collection"],
-                },
-            },
-            {
-                name: "listCollections",
-                description: "List all collections in the MongoDB database",
-                inputSchema: {
-                    type: "object",
-                    properties: {
-                        nameOnly: {
-                            type: "boolean",
-                            description: "Optional: If true, returns only the collection names instead of full collection info",
-                        },
-                        filter: {
-                            type: "object",
-                            description: "Optional: Filter to apply to the collections",
-                        },
-                    },
-                },
-            },
-        ],
-    };
-});
-/**
- * Handler for MongoDB tools.
- * Executes queries and returns results.
- */
-server.setRequestHandler(CallToolRequestSchema, async (request) => {
-    const collection = db.collection(request.params.arguments?.collection);
-    // Define write operations that should be blocked in read-only mode
-    const writeOperations = ["update", "insert", "createIndex"];
-    // Check if the operation is a write operation and we're in read-only mode
-    if (isReadOnlyMode && writeOperations.includes(request.params.name)) {
-        throw new Error(`ReadonlyError: Operation '${request.params.name}' is not allowed in read-only mode`);
-    }
-    switch (request.params.name) {
-        case "query": {
-            const { filter, projection, limit, explain } = request.params.arguments || {};
-            // Validate collection name to prevent access to system collections
-            if (collection.collectionName.startsWith("system.")) {
-                throw new Error("Access to system collections is not allowed");
-            }
-            // Validate and parse filter
-            let queryFilter = {};
-            if (filter) {
-                if (typeof filter === "string") {
-                    try {
-                        queryFilter = JSON.parse(filter);
-                    }
-                    catch (e) {
-                        throw new Error("Invalid filter format: must be a valid JSON object");
-                    }
-                }
-                else if (typeof filter === "object" &&
-                    filter !== null &&
-                    !Array.isArray(filter)) {
-                    queryFilter = filter;
-                }
-                else {
-                    throw new Error("Query filter must be a plain object or ObjectId");
-                }
-            }
-            // Execute the find operation with error handling
-            try {
-                if (explain) {
-                    // Use explain for query analysis
-                    const explainResult = await collection
-                        .find(queryFilter, {
-                        projection,
-                        limit: limit || 100,
-                    })
-                        .explain(explain);
-                    return {
-                        content: [
-                            {
-                                type: "text",
-                                text: JSON.stringify(explainResult, null, 2),
-                            },
-                        ],
-                    };
-                }
-                else {
-                    // Regular query execution
-                    const cursor = collection.find(queryFilter, {
-                        projection,
-                        limit: limit || 100,
-                    });
-                    const results = await cursor.toArray();
-                    return {
-                        content: [
-                            {
-                                type: "text",
-                                text: JSON.stringify(results, null, 2),
-                            },
-                        ],
-                    };
-                }
-            }
-            catch (error) {
-                if (error instanceof Error) {
-                    throw new Error(`Failed to query collection ${collection.collectionName}: ${error.message}`);
-                }
-                throw new Error(`Failed to query collection ${collection.collectionName}: Unknown error`);
-            }
-        }
-        case "aggregate": {
-            const { pipeline, explain } = request.params.arguments || {};
-            if (!Array.isArray(pipeline)) {
-                throw new Error("Pipeline must be an array");
-            }
-            // Validate collection name to prevent access to system collections
-            if (collection.collectionName.startsWith("system.")) {
-                throw new Error("Access to system collections is not allowed");
-            }
-            // Execute the aggregation operation with error handling
-            try {
-                if (explain) {
-                    // Use explain for aggregation analysis
-                    const explainResult = await collection
-                        .aggregate(pipeline, {
-                        explain: {
-                            verbosity: explain,
-                        },
-                    })
-                        .toArray();
-                    return {
-                        content: [
-                            {
-                                type: "text",
-                                text: JSON.stringify(explainResult, null, 2),
-                            },
-                        ],
-                    };
-                }
-                else {
-                    // Regular aggregation execution
-                    const results = await collection.aggregate(pipeline).toArray();
-                    return {
-                        content: [
-                            {
-                                type: "text",
-                                text: JSON.stringify(results, null, 2),
-                            },
-                        ],
-                    };
-                }
-            }
-            catch (error) {
-                if (error instanceof Error) {
-                    throw new Error(`Failed to aggregate collection ${collection.collectionName}: ${error.message}`);
-                }
-                throw new Error(`Failed to aggregate collection ${collection.collectionName}: Unknown error`);
-            }
-        }
-        case "update": {
-            const { filter, update, upsert, multi } = request.params.arguments || {};
-            // Validate collection name to prevent access to system collections
-            if (collection.collectionName.startsWith("system.")) {
-                throw new Error("Access to system collections is not allowed");
-            }
-            // Validate and parse filter
-            let queryFilter = {};
-            if (filter) {
-                if (typeof filter === "string") {
-                    try {
-                        queryFilter = JSON.parse(filter);
-                    }
-                    catch (e) {
-                        throw new Error("Invalid filter format: must be a valid JSON object");
-                    }
-                }
-                else if (typeof filter === "object" &&
-                    filter !== null &&
-                    !Array.isArray(filter)) {
-                    queryFilter = filter;
-                }
-                else {
-                    throw new Error("Query filter must be a plain object or ObjectId");
-                }
-            }
-            // Validate update operations
-            if (!update || typeof update !== "object" || Array.isArray(update)) {
-                throw new Error("Update must be a valid MongoDB update document");
-            }
-            // Check if update operations use valid operators
-            const validUpdateOperators = [
-                "$set",
-                "$unset",
-                "$inc",
-                "$push",
-                "$pull",
-                "$addToSet",
-                "$pop",
-                "$rename",
-                "$mul",
-            ];
-            const hasValidOperator = Object.keys(update).some((key) => validUpdateOperators.includes(key));
-            if (!hasValidOperator) {
-                throw new Error("Update must include at least one valid update operator ($set, $unset, etc.)");
-            }
-            try {
-                const options = {
-                    upsert: !!upsert,
-                    multi: !!multi,
-                };
-                // Use updateOne or updateMany based on multi option
-                const updateMethod = options.multi ? "updateMany" : "updateOne";
-                const result = await collection[updateMethod](queryFilter, update, options);
-                return {
-                    content: [
-                        {
-                            type: "text",
-                            text: JSON.stringify({
-                                matchedCount: result.matchedCount,
-                                modifiedCount: result.modifiedCount,
-                                upsertedCount: result.upsertedCount,
-                                upsertedId: result.upsertedId,
-                            }, null, 2),
-                        },
-                    ],
-                };
-            }
-            catch (error) {
-                if (error instanceof Error) {
-                    throw new Error(`Failed to update collection ${collection.collectionName}: ${error.message}`);
-                }
-                throw new Error(`Failed to update collection ${collection.collectionName}: Unknown error`);
-            }
-        }
-        case "serverInfo": {
-            const { includeDebugInfo } = request.params.arguments || {};
-            try {
-                // Get basic server information using buildInfo command
-                const buildInfo = await db.command({ buildInfo: 1 });
-                // Get additional server status if debug info is requested
-                let serverStatus = null;
-                if (includeDebugInfo) {
-                    serverStatus = await db.command({ serverStatus: 1 });
-                }
-                // Construct the response
-                const serverInfo = {
-                    version: buildInfo.version,
-                    gitVersion: buildInfo.gitVersion,
-                    modules: buildInfo.modules,
-                    allocator: buildInfo.allocator,
-                    javascriptEngine: buildInfo.javascriptEngine,
-                    sysInfo: buildInfo.sysInfo,
-                    storageEngines: buildInfo.storageEngines,
-                    debug: buildInfo.debug,
-                    maxBsonObjectSize: buildInfo.maxBsonObjectSize,
-                    openssl: buildInfo.openssl,
-                    buildEnvironment: buildInfo.buildEnvironment,
-                    bits: buildInfo.bits,
-                    ok: buildInfo.ok,
-                    status: {},
-                    connectionInfo: {
-                        readOnlyMode: isReadOnlyMode,
-                        readPreference: isReadOnlyMode ? "secondary" : "primary",
-                    },
-                };
-                // Add server status information if requested
-                if (serverStatus) {
-                    serverInfo.status = {
-                        host: serverStatus.host,
-                        version: serverStatus.version,
-                        process: serverStatus.process,
-                        pid: serverStatus.pid,
-                        uptime: serverStatus.uptime,
-                        uptimeMillis: serverStatus.uptimeMillis,
-                        uptimeEstimate: serverStatus.uptimeEstimate,
-                        localTime: serverStatus.localTime,
-                        connections: serverStatus.connections,
-                        network: serverStatus.network,
-                        memory: serverStatus.mem,
-                        storageEngine: serverStatus.storageEngine,
-                        security: serverStatus.security,
-                    };
-                }
-                return {
-                    content: [
-                        {
-                            type: "text",
-                            text: JSON.stringify(serverInfo, null, 2),
-                        },
-                    ],
-                };
-            }
-            catch (error) {
-                if (error instanceof Error) {
-                    throw new Error(`Failed to get server information: ${error.message}`);
-                }
-                throw new Error("Failed to get server information: Unknown error");
-            }
-        }
-        case "insert": {
-            const { documents, ordered, writeConcern, bypassDocumentValidation } = request.params.arguments || {};
-            // Validate collection name to prevent access to system collections
-            if (collection.collectionName.startsWith("system.")) {
-                throw new Error("Access to system collections is not allowed");
-            }
-            // Validate documents array
-            if (!Array.isArray(documents)) {
-                throw new Error("Documents must be an array");
-            }
-            if (documents.length === 0) {
-                throw new Error("Documents array cannot be empty");
-            }
-            if (!documents.every((doc) => doc && typeof doc === "object" && !Array.isArray(doc))) {
-                throw new Error("Each document must be a valid MongoDB document object");
-            }
-            try {
-                // Prepare insert options
-                const options = {
-                    ordered: ordered !== false, // default to true if not specified
-                    writeConcern,
-                    bypassDocumentValidation,
-                };
-                // Use insertMany for consistency, it works for single documents too
-                const result = await collection.insertMany(documents, options);
-                return {
-                    content: [
-                        {
-                            type: "text",
-                            text: JSON.stringify({
-                                acknowledged: result.acknowledged,
-                                insertedCount: result.insertedCount,
-                                insertedIds: result.insertedIds,
-                            }, null, 2),
-                        },
-                    ],
-                };
-            }
-            catch (error) {
-                if (error instanceof Error) {
-                    // Handle bulk write errors specially to provide more detail
-                    if (error.name === "BulkWriteError") {
-                        const bulkError = error;
-                        return {
-                            content: [
-                                {
-                                    type: "text",
-                                    text: JSON.stringify({
-                                        error: "Bulk write error occurred",
-                                        writeErrors: bulkError.writeErrors,
-                                        insertedCount: bulkError.result?.nInserted || 0,
-                                        failedCount: bulkError.result?.nFailedInserts || 0,
-                                    }, null, 2),
-                                },
-                            ],
-                        };
-                    }
-                    throw new Error(`Failed to insert documents into collection ${collection.collectionName}: ${error.message}`);
-                }
-                throw new Error(`Failed to insert documents into collection ${collection.collectionName}: Unknown error`);
-            }
-        }
-        case "createIndex": {
-            const { indexes, writeConcern, commitQuorum } = request.params.arguments || {};
-            // Validate collection name to prevent access to system collections
-            if (collection.collectionName.startsWith("system.")) {
-                throw new Error("Access to system collections is not allowed");
-            }
-            // Validate indexes array
-            if (!Array.isArray(indexes) || indexes.length === 0) {
-                throw new Error("Indexes must be a non-empty array");
-            }
-            // Validate writeConcern
-            if (writeConcern &&
-                (typeof writeConcern !== "object" || Array.isArray(writeConcern))) {
-                throw new Error("Write concern must be a valid MongoDB write concern object");
-            }
-            // Validate commitQuorum
-            if (commitQuorum &&
-                typeof commitQuorum !== "string" &&
-                typeof commitQuorum !== "number") {
-                throw new Error("Commit quorum must be a string or number");
-            }
-            try {
-                const result = await collection.createIndexes(indexes, {
-                    writeConcern,
-                    commitQuorum: typeof commitQuorum === "number" ? commitQuorum : undefined,
-                });
-                return {
-                    content: [
-                        {
-                            type: "text",
-                            text: JSON.stringify({
-                                acknowledged: result.acknowledged,
-                                createdIndexes: result.createdIndexes,
-                                numIndexesBefore: result.numIndexesBefore,
-                                numIndexesAfter: result.numIndexesAfter,
-                            }, null, 2),
-                        },
-                    ],
-                };
-            }
-            catch (error) {
-                if (error instanceof Error) {
-                    throw new Error(`Failed to create indexes on collection ${collection.collectionName}: ${error.message}`);
-                }
-                throw new Error(`Failed to create indexes on collection ${collection.collectionName}: Unknown error`);
-            }
-        }
-        case "count": {
-            const args = request.params.arguments || {};
-            const { query } = args;
-            // Validate collection name to prevent access to system collections
-            if (collection.collectionName.startsWith("system.")) {
-                throw new Error("Access to system collections is not allowed");
-            }
-            // Validate and parse query
-            let countQuery = {};
-            if (query) {
-                if (typeof query === "string") {
-                    try {
-                        countQuery = JSON.parse(query);
-                    }
-                    catch (e) {
-                        throw new Error("Invalid query format: must be a valid JSON object");
-                    }
-                }
-                else if (typeof query === "object" &&
-                    query !== null &&
-                    !Array.isArray(query)) {
-                    countQuery = query;
-                }
-                else {
-                    throw new Error("Query must be a plain object");
-                }
-            }
-            try {
-                const options = {
-                    limit: typeof args.limit === "number" ? args.limit : undefined,
-                    skip: typeof args.skip === "number" ? args.skip : undefined,
-                    hint: typeof args.hint === "object" && args.hint !== null
-                        ? args.hint
-                        : undefined,
-                    readConcern: typeof args.readConcern === "object" && args.readConcern !== null
-                        ? args.readConcern
-                        : undefined,
-                    maxTimeMS: typeof args.maxTimeMS === "number" ? args.maxTimeMS : undefined,
-                    collation: typeof args.collation === "object" && args.collation !== null
-                        ? args.collation
-                        : undefined,
-                };
-                // Remove undefined options
-                Object.keys(options).forEach((key) => options[key] === undefined && delete options[key]);
-                // Execute count operation
-                const count = await collection.countDocuments(countQuery, options);
-                return {
-                    content: [
-                        {
-                            type: "text",
-                            text: JSON.stringify({
-                                count: count,
-                                ok: 1,
-                            }, null, 2),
-                        },
-                    ],
-                };
-            }
-            catch (error) {
-                if (error instanceof Error) {
-                    throw new Error(`Failed to count documents in collection ${collection.collectionName}: ${error.message}`);
-                }
-                throw new Error(`Failed to count documents in collection ${collection.collectionName}: Unknown error`);
-            }
-        }
-        case "listCollections": {
-            const { nameOnly, filter } = request.params.arguments || {};
-            try {
-                // Get the list of collections
-                const options = filter ? { filter } : {};
-                const collections = await db.listCollections(options).toArray();
-                // If nameOnly is true, return only the collection names
-                const result = nameOnly
-                    ? collections.map((collection) => collection.name)
-                    : collections;
-                return {
-                    content: [
-                        {
-                            type: "text",
-                            text: JSON.stringify(result, null, 2),
-                        },
-                    ],
-                };
-            }
-            catch (error) {
-                if (error instanceof Error) {
-                    throw new Error(`Failed to list collections: ${error.message}`);
-                }
-                throw new Error("Failed to list collections: Unknown error");
-            }
-        }
-        default:
-            throw new Error(`Unknown tool: ${request.params.name}`);
-    }
-});
-/**
- * Handler that lists available prompts.
- * Exposes prompts for analyzing collections.
- */
-server.setRequestHandler(ListPromptsRequestSchema, async () => {
-    return {
-        prompts: [
-            {
-                name: "analyze_collection",
-                description: "Analyze a MongoDB collection structure and contents",
-                arguments: [
-                    {
-                        name: "collection",
-                        description: "Name of the collection to analyze",
-                        required: true,
-                    },
-                ],
-            },
-        ],
-    };
-});
-/**
- * Handler for collection analysis prompt.
- * Returns a prompt that requests analysis of a collection's structure and data.
- */
-server.setRequestHandler(GetPromptRequestSchema, async (request) => {
-    if (request.params.name !== "analyze_collection") {
-        throw new Error("Unknown prompt");
-    }
-    const collectionName = request.params.arguments?.collection;
-    if (!collectionName) {
-        throw new Error("Collection name is required");
-    }
-    try {
-        const collection = db.collection(collectionName);
-        // Validate collection name to prevent access to system collections
-        if (collection.collectionName.startsWith("system.")) {
-            throw new Error("Access to system collections is not allowed");
-        }
-        const schema = await collection.findOne({});
-        // Get basic collection stats - just count in API v1
-        const stats = await collection
-            .aggregate([
-            {
-                $collStats: {
-                    count: {},
-                },
-            },
-        ])
-            .toArray();
-        // Also get a sample of documents to show data distribution
-        const sampleDocs = await collection.find({}).limit(5).toArray();
-        return {
-            messages: [
-                {
-                    role: "user",
-                    content: {
-                        type: "text",
-                        text: `Please analyze the following MongoDB collection:
-Collection: ${collectionName}
-
-Schema:
-${JSON.stringify(schema, null, 2)}
-
-Stats:
-Document count: ${stats[0]?.count || "unknown"}
-
-Sample documents:
-${JSON.stringify(sampleDocs, null, 2)}`,
-                    },
-                },
-                {
-                    role: "user",
-                    content: {
-                        type: "text",
-                        text: "Provide insights about the collection's structure, data types, and basic statistics.",
-                    },
-                },
-            ],
-        };
-    }
-    catch (error) {
-        if (error instanceof Error) {
-            throw new Error(`Failed to analyze collection ${collectionName}: ${error.message}`);
-        }
-        else {
-            throw new Error(`Failed to analyze collection ${collectionName}: Unknown error`);
-        }
-    }
-});
-/**
- * Handler for listing templates.
- * Exposes templates for constructing MongoDB queries.
- */
-server.setRequestHandler(ListResourceTemplatesRequestSchema, async () => {
-    return {
-        resourceTemplates: [
-            {
-                name: "mongodb_query",
-                description: "Template for constructing MongoDB queries",
-                uriTemplate: "mongodb:///{collection}",
-                text: `To query MongoDB collections, you can use these operators:
-
-Filter operators:
-- $eq: Matches values equal to a specified value
-- $gt/$gte: Matches values greater than (or equal to) a specified value
-- $lt/$lte: Matches values less than (or equal to) a specified value
-- $in: Matches any of the values in an array
-- $nin: Matches none of the values in an array
-- $ne: Matches values not equal to a specified value
-- $exists: Matches documents that have the specified field
-
-Example queries:
-1. Find documents where age > 21:
-{ "age": { "$gt": 21 } }
-
-2. Find documents with specific status:
-{ "status": { "$in": ["active", "pending"] } }
-
-3. Find documents with existing email:
-{ "email": { "$exists": true } }
-
-Use these patterns to construct MongoDB queries.`,
-            },
-        ],
-    };
-});
+import { connectToMongoDB } from "./mongo.js";
+import { createServer } from "./server.js";
+// Declare a client variable in the global scope for cleanup handlers
+let mongoClient = null; // TODO: Fix Typescript error
 /**
  * Start the server using stdio transport and initialize MongoDB connection.
  */
 async function main() {
     const args = process.argv.slice(2);
+    // Default to environment variables
     let connectionUrl = "";
-    let readOnlyMode = false;
-    // Parse command line arguments
+    let readOnlyMode = process.env.MCP_MONGODB_READONLY === "true" || false;
+    // Parse command line arguments (these take precedence)
     for (let i = 0; i < args.length; i++) {
         if (args[i] === "--read-only" || args[i] === "-r") {
             readOnlyMode = true;
@@ -1026,29 +21,54 @@ async function main() {
             connectionUrl = args[i];
         }
     }
+    // If no connection URL from command line, use environment variable
+    if (!connectionUrl) {
+        connectionUrl = process.env.MCP_MONGODB_URI || "";
+    }
     if (!connectionUrl) {
-        console.error("Please provide a MongoDB connection URL as a command-line argument");
+        console.error("Please provide a MongoDB connection URL via command-line argument or MCP_MONGODB_URI environment variable");
         console.error("Usage: command <mongodb-url> [--read-only|-r]");
+        console.error("   or: MCP_MONGODB_URI=<mongodb-url> [MCP_MONGODB_READONLY=true] command");
+        process.exit(1);
+    }
+    // Ensure connection URL has the correct prefix
+    if (!connectionUrl.startsWith("mongodb://") &&
+        !connectionUrl.startsWith("mongodb+srv://")) {
+        console.error("Invalid MongoDB connection URL. URL must start with 'mongodb://' or 'mongodb+srv://'");
         process.exit(1);
     }
-    const connected = await connectToMongoDB(connectionUrl, readOnlyMode);
-    if (!connected) {
-        console.error("Failed to connect to MongoDB");
+    try {
+        const { client, db, isConnected, isReadOnlyMode } = await connectToMongoDB(connectionUrl, readOnlyMode);
+        // Store client in global variable for cleanup
+        mongoClient = client;
+        if (!isConnected || !client || !db) {
+            console.error("Failed to connect to MongoDB");
+            process.exit(1);
+        }
+        // Pass db instead of client to createServer
+        const server = createServer(client, db, isReadOnlyMode);
+        const transport = new StdioServerTransport();
+        await server.connect(transport);
+        console.warn("Server connected successfully");
+    }
+    catch (error) {
+        console.error("Failed to connect to MongoDB:", error);
+        if (mongoClient) {
+            await mongoClient.close();
+        }
         process.exit(1);
     }
-    const transport = new StdioServerTransport();
-    await server.connect(transport);
 }
 // Handle cleanup
 process.on("SIGINT", async () => {
-    if (client) {
-        await client.close();
+    if (mongoClient) {
+        await mongoClient.close();
     }
     process.exit(0);
 });
 process.on("SIGTERM", async () => {
-    if (client) {
-        await client.close();
+    if (mongoClient) {
+        await mongoClient.close();
     }
     process.exit(0);
 });