mcp-local-rag 0.9.0 → 0.10.0

package/README.md

@@ -119,27 +119,22 @@ HTML is automatically cleaned—you get the article content, not the boilerplate
 
 > **Note:** The RAG server itself doesn't fetch web content—your AI assistant retrieves it and passes the HTML to `ingest_data`. This keeps the server fully local while letting you index any content your assistant can access. Please respect website terms of service and copyright when ingesting external content.
 
-### Bulk Ingestion (CLI)
+### CLI Commands
 
-For ingesting multiple files or an entire directory, use the CLI command instead of calling `ingest_file` repeatedly:
+All MCP tools are also available as CLI commands — no MCP server needed:
 
 ```bash
-npx mcp-local-rag ingest --db-path ./lancedb --base-dir ./docs ./docs/
+npx mcp-local-rag ingest ./docs/               # Bulk ingest files
+npx mcp-local-rag query "authentication API"    # Search documents
+npx mcp-local-rag list                          # Show ingestion status
+npx mcp-local-rag status                        # Database stats
+npx mcp-local-rag delete ./docs/old.pdf         # Remove content
+npx mcp-local-rag delete --source "https://..."  # Remove by source URL
 ```
 
-Supports PDF, DOCX, TXT, and Markdown (same as MCP tools). HTML is only supported via `ingest_data`, not CLI.
+Global options (`--db-path`, `--cache-dir`, `--model-name`) go before the subcommand. Run `npx mcp-local-rag --help` for details.
 
-Key options:
-
-| Option | Default | Description |
-|--------|---------|-------------|
-| `--db-path <path>` | `./lancedb/` | LanceDB database path |
-| `--base-dir <path>` | cwd | Base directory for documents |
-| `--model-name <name>` | `Xenova/all-MiniLM-L6-v2` | Embedding model |
-| `--cache-dir <path>` | `./models/` | Model cache directory |
-| `--max-file-size <n>` | `104857600` | Max file size in bytes |
-
-This processes all supported files recursively and runs optimization once at the end — much faster than per-file ingestion for large batches.
+`query`, `list`, `status`, and `delete` output JSON to stdout for piping (e.g., `| jq`). `ingest` outputs progress to stderr.
 
 > ⚠️ **CLI options must match your MCP server config.** Especially `--model-name` — using a different embedding model against an existing database produces incompatible vectors, silently degrading search quality.
 

package/dist/cli/common.d.ts

@@ -0,0 +1,14 @@
+import { Embedder } from '../embedder/index.js';
+import { VectorStore } from '../vectordb/index.js';
+import type { ResolvedGlobalConfig } from './options.js';
+/**
+ * Create an uninitialized VectorStore from resolved global config.
+ * Callers are responsible for calling initialize() before use.
+ */
+export declare function createVectorStore(config: ResolvedGlobalConfig): VectorStore;
+/**
+ * Create an uninitialized Embedder from resolved global config.
+ * Callers are responsible for managing the Embedder lifecycle.
+ */
+export declare function createEmbedder(config: ResolvedGlobalConfig): Embedder;
+//# sourceMappingURL=common.d.ts.map

package/dist/cli/common.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/common.js

@@ -0,0 +1,25 @@
+// Shared CLI component helpers — factory functions for VectorStore and Embedder
+import { Embedder } from '../embedder/index.js';
+import { VectorStore } from '../vectordb/index.js';
+/**
+ * Create an uninitialized VectorStore from resolved global config.
+ * Callers are responsible for calling initialize() before use.
+ */
+export function createVectorStore(config) {
+    return new VectorStore({
+        dbPath: config.dbPath,
+        tableName: 'chunks',
+    });
+}
+/**
+ * Create an uninitialized Embedder from resolved global config.
+ * Callers are responsible for managing the Embedder lifecycle.
+ */
+export function createEmbedder(config) {
+    return new Embedder({
+        modelPath: config.modelName,
+        batchSize: 16,
+        cacheDir: config.cacheDir,
+    });
+}
+//# sourceMappingURL=common.js.map

package/dist/cli/common.js.map

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package/dist/cli/delete.d.ts

@@ -0,0 +1,8 @@
+import type { GlobalOptions } from './options.js';
+/**
+ * Run the delete CLI subcommand.
+ * @param args - Arguments after "delete"
+ * @param globalOptions - Global options parsed before the subcommand
+ */
+export declare function runDelete(args: string[], globalOptions?: GlobalOptions): Promise<void>;
+//# sourceMappingURL=delete.d.ts.map

package/dist/cli/delete.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/delete.js

@@ -0,0 +1,164 @@
+// CLI delete subcommand — delete ingested content by file path or source URL
+import { unlink } from 'node:fs/promises';
+import { resolve } from 'node:path';
+import { generateMetaJsonPath, generateRawDataPath, isRawDataPath, } from '../utils/raw-data-utils.js';
+import { createVectorStore } from './common.js';
+import { resolveGlobalConfig, validatePath } from './options.js';
+// ============================================
+// Help
+// ============================================
+const HELP_TEXT = `Usage: mcp-local-rag [global-options] delete [--source <url>] [<file-path>]
+
+Delete ingested content by file path or source URL.
+
+Either <file-path> or --source is required (not both).
+
+Arguments:
+  <file-path>            File path of ingested content to delete
+
+Options:
+  --source <url>         Delete by source URL (for content ingested via ingest_data)
+  -h, --help             Show this help
+
+Global options (must appear before "delete"):
+  --db-path <path>       LanceDB database path
+  --cache-dir <path>     Model cache directory
+  --model-name <name>    Embedding model`;
+/**
+ * Parse delete-specific CLI arguments.
+ * Accepts a positional <file-path>, --source <url>, and -h/--help.
+ * Unknown flags or conflicting args cause exit(1).
+ */
+function parseArgs(args) {
+    let help = false;
+    let source;
+    let filePath;
+    let i = 0;
+    while (i < args.length) {
+        const arg = args[i];
+        if (arg === '-h' || arg === '--help') {
+            help = true;
+            i++;
+        }
+        else if (arg === '--source') {
+            const value = args[++i];
+            if (value === undefined || value.startsWith('-')) {
+                console.error('Missing value for --source');
+                console.error(HELP_TEXT);
+                process.exit(1);
+            }
+            source = value;
+            i++;
+        }
+        else if (arg.startsWith('-')) {
+            console.error(`Unknown option: ${arg}`);
+            console.error(HELP_TEXT);
+            process.exit(1);
+        }
+        else {
+            // Positional argument: file-path
+            filePath = arg;
+            i++;
+        }
+    }
+    const result = { help };
+    if (source !== undefined)
+        result.source = source;
+    if (filePath !== undefined)
+        result.filePath = filePath;
+    return result;
+}
+// ============================================
+// Main Entry Point
+// ============================================
+/**
+ * Run the delete CLI subcommand.
+ * @param args - Arguments after "delete"
+ * @param globalOptions - Global options parsed before the subcommand
+ */
+export async function runDelete(args, globalOptions = {}) {
+    // Parse CLI options
+    const parsed = parseArgs(args);
+    // Handle --help
+    if (parsed.help) {
+        console.error(HELP_TEXT);
+        process.exit(0);
+    }
+    // Validate: either file-path or --source required, not both
+    if (!parsed.filePath && !parsed.source) {
+        console.error('Either <file-path> or --source is required');
+        console.error(HELP_TEXT);
+        process.exit(1);
+    }
+    if (parsed.filePath && parsed.source) {
+        console.error('Cannot specify both <file-path> and --source');
+        console.error(HELP_TEXT);
+        process.exit(1);
+    }
+    // Resolve global config
+    const globalConfig = resolveGlobalConfig(globalOptions);
+    try {
+        // Create and initialize VectorStore (no Embedder needed for delete)
+        const vectorStore = createVectorStore(globalConfig);
+        await vectorStore.initialize();
+        // Determine target file path
+        let targetPath;
+        if (parsed.source) {
+            // Generate raw-data path from source URL
+            targetPath = generateRawDataPath(globalConfig.dbPath, parsed.source, 'markdown');
+        }
+        else {
+            // Use provided file path, resolve to absolute
+            targetPath = resolve(parsed.filePath);
+            // Validate path (reject sensitive system directories)
+            const pathError = validatePath(targetPath, '<file-path>');
+            if (pathError) {
+                console.error(pathError);
+                process.exitCode = 1;
+                return;
+            }
+        }
+        // Delete chunks from VectorStore
+        await vectorStore.deleteChunks(targetPath);
+        // Clean up physical raw-data files if applicable
+        if (isRawDataPath(targetPath)) {
+            try {
+                await unlink(targetPath);
+            }
+            catch (error) {
+                // Ignore ENOENT (file already deleted / never existed)
+                if (!(error instanceof Error) ||
+                    !('code' in error) ||
+                    error.code !== 'ENOENT') {
+                    throw error;
+                }
+            }
+            try {
+                await unlink(generateMetaJsonPath(targetPath));
+            }
+            catch (error) {
+                // Ignore ENOENT
+                if (!(error instanceof Error) ||
+                    !('code' in error) ||
+                    error.code !== 'ENOENT') {
+                    throw error;
+                }
+            }
+        }
+        // Optimize VectorStore after deletion
+        await vectorStore.optimize();
+        // Output result JSON to stdout
+        const result = {
+            filePath: targetPath,
+            deleted: true,
+            timestamp: new Date().toISOString(),
+        };
+        process.stdout.write(JSON.stringify(result));
+    }
+    catch (error) {
+        const reason = error instanceof Error ? error.message : String(error);
+        console.error(`Error: ${reason}`);
+        process.exit(1);
+    }
+}
+//# sourceMappingURL=delete.js.map

package/dist/cli/delete.js.map

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package/dist/cli/ingest.d.ts

@@ -1,24 +1,37 @@
-interface CliOptions {
-    dbPath?: string | undefined;
+import type { GlobalOptions, ResolvedGlobalConfig } from './options.js';
+interface IngestConfig {
+    baseDir: string;
+    dbPath: string;
+    cacheDir: string;
+    modelName: string;
+    maxFileSize: number;
+}
+interface IngestCliOptions {
     baseDir?: string | undefined;
-    cacheDir?: string | undefined;
-    modelName?: string | undefined;
     maxFileSize?: number | undefined;
 }
 interface ParsedArgs {
     positional: string | undefined;
-    options: CliOptions;
+    options: IngestCliOptions;
     help: boolean;
 }
 /**
- * Parse CLI arguments into options and a positional path.
- * Flags: --db-path, --base-dir, --cache-dir, --model-name, --max-file-size, -h/--help
+ * Parse ingest-specific CLI arguments into options and a positional path.
+ * Flags: --base-dir, --max-file-size, -h/--help
+ * Unknown flags (including global flags passed after subcommand) cause an error.
  */
 export declare function parseArgs(args: string[]): ParsedArgs;
+/**
+ * Resolve ingest config by merging global config with ingest-specific options.
+ * Ingest-specific: baseDir, maxFileSize (CLI flags > env vars > defaults).
+ * Validates all resolved values before returning.
+ */
+export declare function resolveConfig(globalConfig: ResolvedGlobalConfig, ingestOptions?: IngestCliOptions): IngestConfig;
 /**
  * Run the ingest CLI subcommand.
  * @param args - Arguments after "ingest" (e.g., option flags and file/directory path)
+ * @param globalOptions - Global options parsed before the subcommand
  */
-export declare function runIngest(args: string[]): Promise<void>;
+export declare function runIngest(args: string[], globalOptions?: GlobalOptions): Promise<void>;
 export {};
 //# sourceMappingURL=ingest.d.ts.map

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+{"version":3,"file":"ingest.d.ts","sourceRoot":"","sources":["../../src/cli/ingest.ts"],"names":[],"mappings":"AAWA,OAAO,KAAK,EAAE,aAAa,EAAE,oBAAoB,EAAE,MAAM,cAAc,CAAA;AAavE,UAAU,YAAY;IACpB,OAAO,EAAE,MAAM,CAAA;IACf,MAAM,EAAE,MAAM,CAAA;IACd,QAAQ,EAAE,MAAM,CAAA;IAChB,SAAS,EAAE,MAAM,CAAA;IACjB,WAAW,EAAE,MAAM,CAAA;CACpB;AAQD,UAAU,gBAAgB;IACxB,OAAO,CAAC,EAAE,MAAM,GAAG,SAAS,CAAA;IAC5B,WAAW,CAAC,EAAE,MAAM,GAAG,SAAS,CAAA;CACjC;AAED,UAAU,UAAU;IAClB,UAAU,EAAE,MAAM,GAAG,SAAS,CAAA;IAC9B,OAAO,EAAE,gBAAgB,CAAA;IACzB,IAAI,EAAE,OAAO,CAAA;CACd;AAgCD;;;;GAIG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,UAAU,CAqDpD;AAiBD;;;;GAIG;AACH,wBAAgB,aAAa,CAC3B,YAAY,EAAE,oBAAoB,EAClC,aAAa,GAAE,gBAAqB,GACnC,YAAY,CA8Bd;AAuJD;;;;GAIG;AACH,wBAAsB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,aAAa,GAAE,aAAkB,GAAG,OAAO,CAAC,IAAI,CAAC,CA0FhG"}

package/dist/cli/ingest.js

@@ -1,40 +1,44 @@
 // CLI ingest subcommand — bulk file ingestion with single optimize() at end
 import { randomUUID } from 'node:crypto';
-import { readdir, stat } from 'node:fs/promises';
+import { opendir, stat } from 'node:fs/promises';
 import { extname, join, resolve } from 'node:path';
 import { SemanticChunker } from '../chunker/index.js';
-import { Embedder } from '../embedder/index.js';
 import { DocumentParser, SUPPORTED_EXTENSIONS } from '../parser/index.js';
-import { VectorStore } from '../vectordb/index.js';
+import { createEmbedder, createVectorStore } from './common.js';
+import { resolveGlobalConfig, validateMaxFileSize, validatePath } from './options.js';
+// ============================================
+// Constants
+// ============================================
+const MAX_DEPTH = 10;
 // ============================================
 // Defaults
 // ============================================
-const DEFAULTS = {
-    dbPath: './lancedb/',
-    cacheDir: './models/',
-    modelName: 'Xenova/all-MiniLM-L6-v2',
+const INGEST_DEFAULTS = {
     maxFileSize: 104857600,
 };
 // ============================================
 // Help
 // ============================================
-const HELP_TEXT = `Usage: mcp-local-rag ingest [options] <path>
+const HELP_TEXT = `Usage: mcp-local-rag [global-options] ingest [options] <path>
 
 Ingest a single file or all supported files under a directory.
 
 Options:
-  --db-path <path>       LanceDB database path (default: ${DEFAULTS.dbPath})
   --base-dir <path>      Base directory for documents (default: cwd)
-  --cache-dir <path>     Model cache directory (default: ${DEFAULTS.cacheDir})
-  --model-name <name>    Embedding model (default: ${DEFAULTS.modelName})
-  --max-file-size <n>    Max file size in bytes (default: ${DEFAULTS.maxFileSize})
-  -h, --help             Show this help`;
+  --max-file-size <n>    Max file size in bytes (default: ${INGEST_DEFAULTS.maxFileSize})
+  -h, --help             Show this help
+
+Global options (must appear before "ingest"):
+  --db-path <path>       LanceDB database path
+  --cache-dir <path>     Model cache directory
+  --model-name <name>    Embedding model`;
 // ============================================
 // Arg Parsing
 // ============================================
 /**
- * Parse CLI arguments into options and a positional path.
- * Flags: --db-path, --base-dir, --cache-dir, --model-name, --max-file-size, -h/--help
+ * Parse ingest-specific CLI arguments into options and a positional path.
+ * Flags: --base-dir, --max-file-size, -h/--help
+ * Unknown flags (including global flags passed after subcommand) cause an error.
  */
 export function parseArgs(args) {
     const options = {};
@@ -49,24 +53,23 @@ export function parseArgs(args) {
                 help = true;
                 i++;
                 break;
-            case '--db-path':
-                options.dbPath = args[++i];
-                i++;
-                break;
-            case '--base-dir':
-                options.baseDir = args[++i];
-                i++;
-                break;
-            case '--cache-dir':
-                options.cacheDir = args[++i];
-                i++;
-                break;
-            case '--model-name':
-                options.modelName = args[++i];
+            case '--base-dir': {
+                const value = args[++i];
+                if (value === undefined || value.startsWith('-')) {
+                    console.error('Missing value for --base-dir');
+                    process.exit(1);
+                }
+                options.baseDir = value;
                 i++;
                 break;
+            }
             case '--max-file-size': {
-                const parsed = Number.parseInt(args[++i] ?? '', 10);
+                const raw = args[++i];
+                if (raw === undefined || raw.startsWith('-')) {
+                    console.error('Missing value for --max-file-size');
+                    process.exit(1);
+                }
+                const parsed = Number.parseInt(raw, 10);
                 options.maxFileSize = Number.isNaN(parsed) ? undefined : parsed;
                 i++;
                 break;
@@ -77,6 +80,11 @@ export function parseArgs(args) {
                     console.error(HELP_TEXT);
                     process.exit(1);
                 }
+                if (positional !== undefined) {
+                    console.error(`Unexpected argument: ${arg}`);
+                    console.error('Only one path is accepted. Use a directory to ingest multiple files.');
+                    process.exit(1);
+                }
                 positional = arg;
                 i++;
                 break;
@@ -91,24 +99,40 @@ export function parseArgs(args) {
  * Ensure maxFileSize is a valid number, falling back to default if NaN.
  */
 function sanitizeMaxFileSize(value) {
-    return Number.isNaN(value) ? DEFAULTS.maxFileSize : value;
+    return Number.isNaN(value) ? INGEST_DEFAULTS.maxFileSize : value;
 }
 // ============================================
 // Config Resolution
 // ============================================
 /**
- * Resolve config with priority: CLI flags > environment variables > defaults.
+ * Resolve ingest config by merging global config with ingest-specific options.
+ * Ingest-specific: baseDir, maxFileSize (CLI flags > env vars > defaults).
+ * Validates all resolved values before returning.
  */
-function resolveConfig(cliOptions = {}) {
+export function resolveConfig(globalConfig, ingestOptions = {}) {
+    const baseDir = ingestOptions.baseDir ?? process.env['BASE_DIR'] ?? process.cwd();
+    const maxFileSize = sanitizeMaxFileSize(ingestOptions.maxFileSize ??
+        (process.env['MAX_FILE_SIZE']
+            ? Number.parseInt(process.env['MAX_FILE_SIZE'], 10)
+            : INGEST_DEFAULTS.maxFileSize));
+    // Validate baseDir path
+    const baseDirError = validatePath(baseDir, '--base-dir');
+    if (baseDirError) {
+        console.error(baseDirError);
+        process.exit(1);
+    }
+    // Validate maxFileSize range
+    const maxFileSizeError = validateMaxFileSize(maxFileSize);
+    if (maxFileSizeError) {
+        console.error(maxFileSizeError);
+        process.exit(1);
+    }
     return {
-        baseDir: cliOptions.baseDir ?? process.env['BASE_DIR'] ?? process.cwd(),
-        dbPath: cliOptions.dbPath ?? process.env['DB_PATH'] ?? DEFAULTS.dbPath,
-        cacheDir: cliOptions.cacheDir ?? process.env['CACHE_DIR'] ?? DEFAULTS.cacheDir,
-        modelName: cliOptions.modelName ?? process.env['MODEL_NAME'] ?? DEFAULTS.modelName,
-        maxFileSize: sanitizeMaxFileSize(cliOptions.maxFileSize ??
-            (process.env['MAX_FILE_SIZE']
-                ? Number.parseInt(process.env['MAX_FILE_SIZE'], 10)
-                : DEFAULTS.maxFileSize)),
+        dbPath: globalConfig.dbPath,
+        cacheDir: globalConfig.cacheDir,
+        modelName: globalConfig.modelName,
+        baseDir,
+        maxFileSize,
     };
 }
 // ============================================
@@ -117,8 +141,8 @@ function resolveConfig(cliOptions = {}) {
 /**
  * Collect files to ingest from a path.
  * - If path is a file with supported extension, return [path].
- * - If path is a directory, recursively scan for supported files.
- * - Exclude dbPath and cacheDir directories.
+ * - If path is a directory, walk with BFS up to MAX_DEPTH levels.
+ * - Skip symlinks, permission errors, and excluded directories.
  */
 async function collectFiles(targetPath, excludePaths) {
     const resolved = resolve(targetPath);
@@ -132,12 +156,43 @@ async function collectFiles(targetPath, excludePaths) {
         return [resolved];
     }
     if (info.isDirectory()) {
-        const entries = await readdir(resolved, { recursive: true, withFileTypes: true });
-        return entries
-            .filter((e) => e.isFile() && SUPPORTED_EXTENSIONS.has(extname(e.name).toLowerCase()))
-            .map((e) => join(e.parentPath, e.name))
-            .filter((filePath) => !excludePaths.some((ep) => filePath.startsWith(ep)))
-            .sort();
+        const files = [];
+        let depthLimited = false;
+        const queue = [{ dirPath: resolved, depth: 0 }];
+        while (queue.length > 0) {
+            const { dirPath, depth } = queue.shift();
+            if (depth >= MAX_DEPTH) {
+                depthLimited = true;
+                continue;
+            }
+            let dir;
+            try {
+                dir = await opendir(dirPath);
+            }
+            catch {
+                console.error(`Warning: cannot read directory: ${dirPath}`);
+                continue;
+            }
+            for await (const entry of dir) {
+                const fullPath = join(dirPath, entry.name);
+                if (!fullPath.startsWith(resolved))
+                    continue;
+                if (entry.isSymbolicLink())
+                    continue;
+                if (excludePaths.some((ep) => fullPath.startsWith(ep)))
+                    continue;
+                if (entry.isDirectory()) {
+                    queue.push({ dirPath: fullPath, depth: depth + 1 });
+                }
+                else if (entry.isFile() && SUPPORTED_EXTENSIONS.has(extname(entry.name).toLowerCase())) {
+                    files.push(fullPath);
+                }
+            }
+        }
+        if (depthLimited) {
+            console.error(`Warning: some directories were skipped because they exceed the maximum depth (${MAX_DEPTH})`);
+        }
+        return files.sort();
     }
     return [];
 }
@@ -205,8 +260,9 @@ async function ingestSingleFile(filePath, parser, chunker, embedder, vectorStore
 /**
  * Run the ingest CLI subcommand.
  * @param args - Arguments after "ingest" (e.g., option flags and file/directory path)
+ * @param globalOptions - Global options parsed before the subcommand
  */
-export async function runIngest(args) {
+export async function runIngest(args, globalOptions = {}) {
     // Parse CLI options
     const { positional, options, help } = parseArgs(args);
     // Handle --help
@@ -231,7 +287,8 @@ export async function runIngest(args) {
         process.exit(1);
     }
     // Resolve config: CLI flags > env vars > defaults
-    const config = resolveConfig(options);
+    const globalConfig = resolveGlobalConfig(globalOptions);
+    const config = resolveConfig(globalConfig, options);
     const excludePaths = [`${resolve(config.dbPath)}/`, `${resolve(config.cacheDir)}/`];
     // Collect files
     const files = await collectFiles(targetPath, excludePaths);
@@ -246,15 +303,8 @@ export async function runIngest(args) {
         maxFileSize: config.maxFileSize,
     });
     const chunker = new SemanticChunker();
-    const embedder = new Embedder({
-        modelPath: config.modelName,
-        batchSize: 16,
-        cacheDir: config.cacheDir,
-    });
-    const vectorStore = new VectorStore({
-        dbPath: config.dbPath,
-        tableName: 'chunks',
-    });
+    const embedder = createEmbedder(globalConfig);
+    const vectorStore = createVectorStore(globalConfig);
     await vectorStore.initialize();
     // Process each file
     const summary = { succeeded: 0, failed: 0, totalChunks: 0 };

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