mcp-local-rag 0.8.1 → 0.9.0

package/README.md

@@ -119,6 +119,30 @@ HTML is automatically cleaned—you get the article content, not the boilerplate
 
 > **Note:** The RAG server itself doesn't fetch web content—your AI assistant retrieves it and passes the HTML to `ingest_data`. This keeps the server fully local while letting you index any content your assistant can access. Please respect website terms of service and copyright when ingesting external content.
 
+### Bulk Ingestion (CLI)
+
+For ingesting multiple files or an entire directory, use the CLI command instead of calling `ingest_file` repeatedly:
+
+```bash
+npx mcp-local-rag ingest --db-path ./lancedb --base-dir ./docs ./docs/
+```
+
+Supports PDF, DOCX, TXT, and Markdown (same as MCP tools). HTML is only supported via `ingest_data`, not CLI.
+
+Key options:
+
+| Option | Default | Description |
+|--------|---------|-------------|
+| `--db-path <path>` | `./lancedb/` | LanceDB database path |
+| `--base-dir <path>` | cwd | Base directory for documents |
+| `--model-name <name>` | `Xenova/all-MiniLM-L6-v2` | Embedding model |
+| `--cache-dir <path>` | `./models/` | Model cache directory |
+| `--max-file-size <n>` | `104857600` | Max file size in bytes |
+
+This processes all supported files recursively and runs optimization once at the end — much faster than per-file ingestion for large batches.
+
+> ⚠️ **CLI options must match your MCP server config.** Especially `--model-name` — using a different embedding model against an existing database produces incompatible vectors, silently degrading search quality.
+
 ### Searching Documents
 
 ```
@@ -407,6 +431,7 @@ pnpm run check:all     # Full quality check
 src/
   index.ts      # Entry point
   server/       # MCP tool handlers
+  cli/          # CLI subcommands (ingest)
   parser/       # PDF, DOCX, TXT, MD parsing
   chunker/      # Text splitting
   embedder/     # Transformers.js embeddings

package/dist/cli/ingest.d.ts

@@ -0,0 +1,24 @@
+interface CliOptions {
+    dbPath?: string | undefined;
+    baseDir?: string | undefined;
+    cacheDir?: string | undefined;
+    modelName?: string | undefined;
+    maxFileSize?: number | undefined;
+}
+interface ParsedArgs {
+    positional: string | undefined;
+    options: CliOptions;
+    help: boolean;
+}
+/**
+ * Parse CLI arguments into options and a positional path.
+ * Flags: --db-path, --base-dir, --cache-dir, --model-name, --max-file-size, -h/--help
+ */
+export declare function parseArgs(args: string[]): ParsedArgs;
+/**
+ * Run the ingest CLI subcommand.
+ * @param args - Arguments after "ingest" (e.g., option flags and file/directory path)
+ */
+export declare function runIngest(args: string[]): Promise<void>;
+export {};
+//# sourceMappingURL=ingest.d.ts.map

package/dist/cli/ingest.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/ingest.js

@@ -0,0 +1,295 @@
+// CLI ingest subcommand — bulk file ingestion with single optimize() at end
+import { randomUUID } from 'node:crypto';
+import { readdir, stat } from 'node:fs/promises';
+import { extname, join, resolve } from 'node:path';
+import { SemanticChunker } from '../chunker/index.js';
+import { Embedder } from '../embedder/index.js';
+import { DocumentParser, SUPPORTED_EXTENSIONS } from '../parser/index.js';
+import { VectorStore } from '../vectordb/index.js';
+// ============================================
+// Defaults
+// ============================================
+const DEFAULTS = {
+    dbPath: './lancedb/',
+    cacheDir: './models/',
+    modelName: 'Xenova/all-MiniLM-L6-v2',
+    maxFileSize: 104857600,
+};
+// ============================================
+// Help
+// ============================================
+const HELP_TEXT = `Usage: mcp-local-rag ingest [options] <path>
+
+Ingest a single file or all supported files under a directory.
+
+Options:
+  --db-path <path>       LanceDB database path (default: ${DEFAULTS.dbPath})
+  --base-dir <path>      Base directory for documents (default: cwd)
+  --cache-dir <path>     Model cache directory (default: ${DEFAULTS.cacheDir})
+  --model-name <name>    Embedding model (default: ${DEFAULTS.modelName})
+  --max-file-size <n>    Max file size in bytes (default: ${DEFAULTS.maxFileSize})
+  -h, --help             Show this help`;
+// ============================================
+// Arg Parsing
+// ============================================
+/**
+ * Parse CLI arguments into options and a positional path.
+ * Flags: --db-path, --base-dir, --cache-dir, --model-name, --max-file-size, -h/--help
+ */
+export function parseArgs(args) {
+    const options = {};
+    let positional;
+    let help = false;
+    let i = 0;
+    while (i < args.length) {
+        const arg = args[i];
+        switch (arg) {
+            case '-h':
+            case '--help':
+                help = true;
+                i++;
+                break;
+            case '--db-path':
+                options.dbPath = args[++i];
+                i++;
+                break;
+            case '--base-dir':
+                options.baseDir = args[++i];
+                i++;
+                break;
+            case '--cache-dir':
+                options.cacheDir = args[++i];
+                i++;
+                break;
+            case '--model-name':
+                options.modelName = args[++i];
+                i++;
+                break;
+            case '--max-file-size': {
+                const parsed = Number.parseInt(args[++i] ?? '', 10);
+                options.maxFileSize = Number.isNaN(parsed) ? undefined : parsed;
+                i++;
+                break;
+            }
+            default:
+                if (arg.startsWith('-')) {
+                    console.error(`Unknown option: ${arg}`);
+                    console.error(HELP_TEXT);
+                    process.exit(1);
+                }
+                positional = arg;
+                i++;
+                break;
+        }
+    }
+    return { positional, options, help };
+}
+// ============================================
+// NaN Defense
+// ============================================
+/**
+ * Ensure maxFileSize is a valid number, falling back to default if NaN.
+ */
+function sanitizeMaxFileSize(value) {
+    return Number.isNaN(value) ? DEFAULTS.maxFileSize : value;
+}
+// ============================================
+// Config Resolution
+// ============================================
+/**
+ * Resolve config with priority: CLI flags > environment variables > defaults.
+ */
+function resolveConfig(cliOptions = {}) {
+    return {
+        baseDir: cliOptions.baseDir ?? process.env['BASE_DIR'] ?? process.cwd(),
+        dbPath: cliOptions.dbPath ?? process.env['DB_PATH'] ?? DEFAULTS.dbPath,
+        cacheDir: cliOptions.cacheDir ?? process.env['CACHE_DIR'] ?? DEFAULTS.cacheDir,
+        modelName: cliOptions.modelName ?? process.env['MODEL_NAME'] ?? DEFAULTS.modelName,
+        maxFileSize: sanitizeMaxFileSize(cliOptions.maxFileSize ??
+            (process.env['MAX_FILE_SIZE']
+                ? Number.parseInt(process.env['MAX_FILE_SIZE'], 10)
+                : DEFAULTS.maxFileSize)),
+    };
+}
+// ============================================
+// File Collection
+// ============================================
+/**
+ * Collect files to ingest from a path.
+ * - If path is a file with supported extension, return [path].
+ * - If path is a directory, recursively scan for supported files.
+ * - Exclude dbPath and cacheDir directories.
+ */
+async function collectFiles(targetPath, excludePaths) {
+    const resolved = resolve(targetPath);
+    const info = await stat(resolved);
+    if (info.isFile()) {
+        const ext = extname(resolved).toLowerCase();
+        if (!SUPPORTED_EXTENSIONS.has(ext)) {
+            console.error(`Unsupported file extension: ${ext} (supported: ${[...SUPPORTED_EXTENSIONS].join(', ')})`);
+            return [];
+        }
+        return [resolved];
+    }
+    if (info.isDirectory()) {
+        const entries = await readdir(resolved, { recursive: true, withFileTypes: true });
+        return entries
+            .filter((e) => e.isFile() && SUPPORTED_EXTENSIONS.has(extname(e.name).toLowerCase()))
+            .map((e) => join(e.parentPath, e.name))
+            .filter((filePath) => !excludePaths.some((ep) => filePath.startsWith(ep)))
+            .sort();
+    }
+    return [];
+}
+// ============================================
+// Per-file Ingestion
+// ============================================
+/**
+ * Ingest a single file: parse, chunk, embed, delete old chunks, insert new chunks.
+ * Returns the number of chunks inserted.
+ */
+async function ingestSingleFile(filePath, parser, chunker, embedder, vectorStore) {
+    // Parse file
+    const isPdf = filePath.toLowerCase().endsWith('.pdf');
+    let text;
+    let title = null;
+    if (isPdf) {
+        const result = await parser.parsePdf(filePath, embedder);
+        text = result.content;
+        title = result.title || null;
+    }
+    else {
+        const result = await parser.parseFile(filePath);
+        text = result.content;
+        title = result.title || null;
+    }
+    // Chunk text
+    const chunks = await chunker.chunkText(text, embedder);
+    if (chunks.length === 0) {
+        console.error(`  Warning: 0 chunks generated (file may be empty or too short)`);
+        return 0;
+    }
+    // Generate embeddings
+    const embeddings = await embedder.embedBatch(chunks.map((c) => c.text));
+    // Delete existing chunks for this file
+    await vectorStore.deleteChunks(filePath);
+    // Build vector chunks
+    const timestamp = new Date().toISOString();
+    const vectorChunks = chunks.map((chunk, index) => {
+        const embedding = embeddings[index];
+        if (!embedding) {
+            throw new Error(`Missing embedding for chunk ${index}`);
+        }
+        return {
+            id: randomUUID(),
+            filePath,
+            chunkIndex: chunk.index,
+            text: chunk.text,
+            vector: embedding,
+            metadata: {
+                fileName: filePath.split('/').pop() || filePath,
+                fileSize: text.length,
+                fileType: filePath.split('.').pop() || '',
+            },
+            fileTitle: title,
+            timestamp,
+        };
+    });
+    // Insert chunks
+    await vectorStore.insertChunks(vectorChunks);
+    return vectorChunks.length;
+}
+// ============================================
+// Main Entry Point
+// ============================================
+/**
+ * Run the ingest CLI subcommand.
+ * @param args - Arguments after "ingest" (e.g., option flags and file/directory path)
+ */
+export async function runIngest(args) {
+    // Parse CLI options
+    const { positional, options, help } = parseArgs(args);
+    // Handle --help
+    if (help) {
+        console.error(HELP_TEXT);
+        process.exit(0);
+    }
+    // Validate positional argument
+    if (!positional) {
+        console.error('Usage: mcp-local-rag ingest [options] <path>');
+        console.error('  Ingest a single file or all supported files under a directory.');
+        console.error('  Run with --help for all options.');
+        process.exit(1);
+    }
+    const targetPath = positional;
+    // Validate path exists
+    try {
+        await stat(targetPath);
+    }
+    catch {
+        console.error(`Error: path does not exist: ${targetPath}`);
+        process.exit(1);
+    }
+    // Resolve config: CLI flags > env vars > defaults
+    const config = resolveConfig(options);
+    const excludePaths = [`${resolve(config.dbPath)}/`, `${resolve(config.cacheDir)}/`];
+    // Collect files
+    const files = await collectFiles(targetPath, excludePaths);
+    if (files.length === 0) {
+        console.error('No supported files found.');
+        process.exit(1);
+    }
+    console.error(`Found ${files.length} file(s) to ingest.`);
+    // Initialize components (single instances reused across all files)
+    const parser = new DocumentParser({
+        baseDir: config.baseDir,
+        maxFileSize: config.maxFileSize,
+    });
+    const chunker = new SemanticChunker();
+    const embedder = new Embedder({
+        modelPath: config.modelName,
+        batchSize: 16,
+        cacheDir: config.cacheDir,
+    });
+    const vectorStore = new VectorStore({
+        dbPath: config.dbPath,
+        tableName: 'chunks',
+    });
+    await vectorStore.initialize();
+    // Process each file
+    const summary = { succeeded: 0, failed: 0, totalChunks: 0 };
+    for (let i = 0; i < files.length; i++) {
+        const filePath = files[i];
+        const label = `[${i + 1}/${files.length}]`;
+        try {
+            const chunkCount = await ingestSingleFile(filePath, parser, chunker, embedder, vectorStore);
+            if (chunkCount === 0) {
+                // 0 chunks is a skip/warning, not a failure
+                console.error(`${label} ${filePath} ... SKIPPED (0 chunks)`);
+                summary.succeeded++;
+            }
+            else {
+                console.error(`${label} ${filePath} ... OK (${chunkCount} chunks)`);
+                summary.succeeded++;
+                summary.totalChunks += chunkCount;
+            }
+        }
+        catch (error) {
+            const reason = error instanceof Error ? error.message : String(error);
+            console.error(`${label} ${filePath} ... FAILED: ${reason}`);
+            summary.failed++;
+        }
+    }
+    // Optimize once at end (not per-file)
+    await vectorStore.optimize();
+    // Print summary
+    console.error('');
+    console.error('--- Ingest Summary ---');
+    console.error(`Succeeded: ${summary.succeeded}`);
+    console.error(`Failed:    ${summary.failed}`);
+    console.error(`Total chunks: ${summary.totalChunks}`);
+    if (summary.failed > 0) {
+        process.exitCode = 1;
+    }
+}
+//# sourceMappingURL=ingest.js.map

package/dist/cli/ingest.js.map

@@ -0,0 +1 @@
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package/dist/cli-main.d.ts

@@ -2,5 +2,5 @@
  * Handle CLI subcommands
  * @param args - Command line arguments (after the binary name)
  */
-export declare function handleCli(args: string[]): void;
+export declare function handleCli(args: string[]): Promise<void>;
 //# sourceMappingURL=cli-main.d.ts.map

package/dist/cli-main.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cli-main.d.ts","sourceRoot":"","sources":["../src/cli-main.ts"],"names":[],"mappings":"AAGA;;;GAGG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,IAAI,CAsB9C"}
+{"version":3,"file":"cli-main.d.ts","sourceRoot":"","sources":["../src/cli-main.ts"],"names":[],"mappings":"AAIA;;;GAGG;AACH,wBAAsB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CA0B7D"}

package/dist/cli-main.js

@@ -1,10 +1,11 @@
 // CLI entry point for subcommands (skills install, etc.)
 import { run as runSkillsInstall } from './bin/install-skills.js';
+import { runIngest } from './cli/ingest.js';
 /**
  * Handle CLI subcommands
  * @param args - Command line arguments (after the binary name)
  */
-export function handleCli(args) {
+export async function handleCli(args) {
     const subcommand = args[0];
     switch (subcommand) {
         case 'skills':
@@ -18,9 +19,12 @@ export function handleCli(args) {
                 process.exit(1);
             }
             break;
+        case 'ingest':
+            await runIngest(args.slice(1));
+            break;
         default:
             console.error(`Unknown command: ${subcommand}`);
-            console.error('Available commands: skills');
+            console.error('Available commands: skills, ingest');
             process.exit(1);
     }
 }

package/dist/cli-main.js.map

@@ -1 +1 @@
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+{"version":3,"file":"cli-main.js","sourceRoot":"","sources":["../src/cli-main.ts"],"names":[],"mappings":"AAAA,yDAAyD;AACzD,OAAO,EAAE,GAAG,IAAI,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AACjE,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAE3C;;;GAGG;AACH,MAAM,CAAC,KAAK,UAAU,SAAS,CAAC,IAAc;IAC5C,MAAM,UAAU,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;IAE1B,QAAQ,UAAU,EAAE,CAAC;QACnB,KAAK,QAAQ;YACX,IAAI,IAAI,CAAC,CAAC,CAAC,KAAK,SAAS,EAAE,CAAC;gBAC1B,gBAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;gBAC/B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACjB,CAAC;iBAAM,CAAC;gBACN,OAAO,CAAC,KAAK,CACX,8EAA8E,CAC/E,CAAA;gBACD,OAAO,CAAC,KAAK,CAAC,qEAAqE,CAAC,CAAA;gBACpF,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACjB,CAAC;YACD,MAAK;QAEP,KAAK,QAAQ;YACX,MAAM,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAK;QAEP;YACE,OAAO,CAAC,KAAK,CAAC,oBAAoB,UAAU,EAAE,CAAC,CAAA;YAC/C,OAAO,CAAC,KAAK,CAAC,oCAAoC,CAAC,CAAA;YACnD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IACnB,CAAC;AACH,CAAC"}

package/dist/embedder/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/embedder/index.ts"],"names":[],"mappings":"AAQA;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,6BAA6B;IAC7B,SAAS,EAAE,MAAM,CAAA;IACjB,iBAAiB;IACjB,SAAS,EAAE,MAAM,CAAA;IACjB,4BAA4B;IAC5B,QAAQ,EAAE,MAAM,CAAA;CACjB;AAMD;;GAEG;AACH,qBAAa,cAAe,SAAQ,KAAK;aAGZ,KAAK,CAAC,EAAE,KAAK;gBADtC,OAAO,EAAE,MAAM,EACU,KAAK,CAAC,EAAE,KAAK,YAAA;CAKzC;AAMD;;;;;;;GAOG;AACH,qBAAa,QAAQ;IAEnB,OAAO,CAAC,KAAK,CAAgB;IAC7B,OAAO,CAAC,WAAW,CAA6B;IAChD,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAgB;gBAE3B,MAAM,EAAE,cAAc;IAIlC;;OAEG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAuBjC;;;OAGG;YACW,iBAAiB;IA+B/B;;;;;OAKG;IACG,KAAK,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAiC5C;;;;;OAKG;IACG,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC;CA0BvD"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/embedder/index.ts"],"names":[],"mappings":"AAQA;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,6BAA6B;IAC7B,SAAS,EAAE,MAAM,CAAA;IACjB,iBAAiB;IACjB,SAAS,EAAE,MAAM,CAAA;IACjB,4BAA4B;IAC5B,QAAQ,EAAE,MAAM,CAAA;CACjB;AAMD;;GAEG;AACH,qBAAa,cAAe,SAAQ,KAAK;aAGZ,KAAK,CAAC,EAAE,KAAK;gBADtC,OAAO,EAAE,MAAM,EACU,KAAK,CAAC,EAAE,KAAK,YAAA;CAKzC;AAMD;;;;;;;GAOG;AACH,qBAAa,QAAQ;IAEnB,OAAO,CAAC,KAAK,CAAgB;IAC7B,OAAO,CAAC,WAAW,CAA6B;IAChD,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAgB;gBAE3B,MAAM,EAAE,cAAc;IAIlC;;OAEG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAyBjC;;;OAGG;YACW,iBAAiB;IA+B/B;;;;;OAKG;IACG,KAAK,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAiC5C;;;;;OAKG;IACG,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC;CA0BvD"}

package/dist/embedder/index.js

@@ -45,7 +45,9 @@ export class Embedder {
             console.error(`Embedder: Setting cache directory to "${this.config.cacheDir}"`);
             console.error(`Embedder: Loading model "${this.config.modelPath}"...`);
             // Use type assertion to avoid TS2590 (union type too complex with @types/jsdom)
-            this.model = await pipeline('feature-extraction', this.config.modelPath);
+            this.model = await pipeline('feature-extraction', this.config.modelPath, {
+                dtype: 'fp32',
+            });
             console.error('Embedder: Model loaded successfully');
         }
         catch (error) {

package/dist/embedder/index.js.map

@@ -1 +1 @@
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package/dist/index.js

@@ -6,12 +6,15 @@ import { startServer } from './server-main.js';
 // ============================================
 // Routing
 // ============================================
-const SUBCOMMANDS = new Set(['skills']);
+const SUBCOMMANDS = new Set(['skills', 'ingest']);
 const args = process.argv.slice(2);
 const firstArg = args[0];
 if (firstArg && SUBCOMMANDS.has(firstArg)) {
     // CLI subcommand
-    handleCli(args);
+    handleCli(args).catch((error) => {
+        console.error(error);
+        process.exit(1);
+    });
 }
 else {
     // Default: start MCP server

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AACA,gCAAgC;AAChC,qDAAqD;AAErD,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AACzC,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAA;AAE9C,+CAA+C;AAC/C,UAAU;AACV,+CAA+C;AAE/C,MAAM,WAAW,GAAG,IAAI,GAAG,CAAC,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC,CAAA;AAEjD,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;AAClC,MAAM,QAAQ,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;AAExB,IAAI,QAAQ,IAAI,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC;IAC1C,iBAAiB;IACjB,SAAS,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,EAAE;QAC9B,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;QACpB,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IACjB,CAAC,CAAC,CAAA;AACJ,CAAC;KAAM,CAAC;IACN,4BAA4B;IAC5B,OAAO,CAAC,EAAE,CAAC,oBAAoB,EAAE,CAAC,MAAM,EAAE,OAAO,EAAE,EAAE;QACnD,OAAO,CAAC,KAAK,CAAC,yBAAyB,EAAE,OAAO,EAAE,SAAS,EAAE,MAAM,CAAC,CAAA;QACpE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IACjB,CAAC,CAAC,CAAA;IAEF,OAAO,CAAC,EAAE,CAAC,mBAAmB,EAAE,CAAC,KAAK,EAAE,EAAE;QACxC,OAAO,CAAC,KAAK,CAAC,qBAAqB,EAAE,KAAK,CAAC,CAAA;QAC3C,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IACjB,CAAC,CAAC,CAAA;IAEF,WAAW,EAAE,CAAA;AACf,CAAC"}

package/dist/server/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/server/index.ts"],"names":[],"mappings":"AAOA,OAAO,EACL,KAAK,WAAW,EAKjB,MAAM,oCAAoC,CAAA;AAmB3C,OAAO,KAAK,EACV,eAAe,EAEf,eAAe,EACf,eAAe,EAGf,mBAAmB,EAEnB,eAAe,EAEhB,MAAM,YAAY,CAAA;AAEnB,6CAA6C;AAC7C,qBAAa,SAAS;IACpB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAQ;IAC/B,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAa;IACzC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAU;IACnC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAiB;IACzC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAgB;IACvC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAQ;IAC/B,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAQ;IAEhC,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAU;IACvC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAU;IACzC,OAAO,CAAC,kBAAkB,CAAQ;gBAEtB,MAAM,EAAE,eAAe;IA2CnC;;;OAGG;IACH,OAAO,CAAC,yBAAyB;IAkBjC;;OAEG;IACH,OAAO,CAAC,aAAa;IAsCrB;;OAEG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAKjC;;OAEG;IACG,oBAAoB,CACxB,IAAI,EAAE,mBAAmB,GACxB,OAAO,CAAC;QAAE,OAAO,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAC;YAAC,WAAW,CAAC,EAAE,WAAW,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAiDzF;;OAEG;IACG,gBAAgB,CACpB,IAAI,EAAE,eAAe,GACpB,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAwJzD;;;;;;;;OAQG;IACG,gBAAgB,CACpB,IAAI,EAAE,eAAe,GACpB,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAyEzD;;;OAGG;IACG,eAAe,IAAI,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAmD/E;;OAEG;IACG,YAAY,IAAI,OAAO,CAAC;QAC5B,OAAO,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAC;YAAC,WAAW,CAAC,EAAE,WAAW,CAAA;SAAE,CAAC,CAAA;KAC1E,CAAC;IAoBF;;;;OAIG;IACG,gBAAgB,CACpB,IAAI,EAAE,eAAe,GACpB,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAgEzD;;OAEG;IACG,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC;CAK3B"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/server/index.ts"],"names":[],"mappings":"AAOA,OAAO,EACL,KAAK,WAAW,EAKjB,MAAM,oCAAoC,CAAA;AAmB3C,OAAO,KAAK,EACV,eAAe,EAEf,eAAe,EACf,eAAe,EAGf,mBAAmB,EAEnB,eAAe,EAEhB,MAAM,YAAY,CAAA;AAEnB,6CAA6C;AAC7C,qBAAa,SAAS;IACpB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAQ;IAC/B,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAa;IACzC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAU;IACnC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAiB;IACzC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAgB;IACvC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAQ;IAC/B,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAQ;IAEhC,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAU;IACvC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAU;IACzC,OAAO,CAAC,kBAAkB,CAAQ;gBAEtB,MAAM,EAAE,eAAe;IA2CnC;;;OAGG;IACH,OAAO,CAAC,yBAAyB;IAkBjC;;OAEG;IACH,OAAO,CAAC,aAAa;IAsCrB;;OAEG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAKjC;;OAEG;IACG,oBAAoB,CACxB,IAAI,EAAE,mBAAmB,GACxB,OAAO,CAAC;QAAE,OAAO,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAC;YAAC,WAAW,CAAC,EAAE,WAAW,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAiDzF;;OAEG;IACG,gBAAgB,CACpB,IAAI,EAAE,eAAe,GACpB,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IA4JzD;;;;;;;;OAQG;IACG,gBAAgB,CACpB,IAAI,EAAE,eAAe,GACpB,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAyEzD;;;OAGG;IACG,eAAe,IAAI,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAmD/E;;OAEG;IACG,YAAY,IAAI,OAAO,CAAC;QAC5B,OAAO,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAC;YAAC,WAAW,CAAC,EAAE,WAAW,CAAA;SAAE,CAAC,CAAA;KAC1E,CAAC;IAoBF;;;;OAIG;IACG,gBAAgB,CACpB,IAAI,EAAE,eAAe,GACpB,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAA;KAAE,CAAC;IAiEzD;;OAEG;IACG,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC;CAK3B"}

package/dist/server/index.js

@@ -248,6 +248,8 @@ export class RAGServer {
             try {
                 await this.vectorStore.insertChunks(vectorChunks);
                 console.error(`Inserted ${vectorChunks.length} chunks for: ${args.filePath}`);
+                // Optimize once after both delete + insert (not per-operation)
+                await this.vectorStore.optimize();
                 // Delete backup on success
                 backup = null;
             }
@@ -257,6 +259,7 @@ export class RAGServer {
                     console.error('Ingestion failed, rolling back...', insertError);
                     try {
                         await this.vectorStore.insertChunks(backup);
+                        await this.vectorStore.optimize();
                         console.error(`Rollback completed: ${backup.length} chunks restored`);
                     }
                     catch (rollbackError) {
@@ -459,6 +462,7 @@ export class RAGServer {
             }
             // Delete chunks from vector database
             await this.vectorStore.deleteChunks(targetPath);
+            await this.vectorStore.optimize();
             // Also delete physical raw-data file if applicable
             if (isRawDataPath(targetPath)) {
                 try {

package/dist/server/index.js.map

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package/dist/vectordb/index.d.ts

@@ -43,11 +43,14 @@ export declare class VectorStore {
      */
     private ensureSchemaVersion;
     /**
-     * Rebuild FTS index after data changes (insert/delete)
-     * LanceDB OSS requires explicit optimize() call to update FTS index
-     * Also cleans up old index versions to prevent storage bloat
+     * Optimize table: compact fragments, update FTS index, and clean up old versions.
+     * LanceDB OSS requires explicit optimize() call to update FTS index.
+     *
+     * Callers are responsible for deciding when to invoke this (e.g., once per
+     * ingest rather than after every insert/delete) to avoid O(n²) overhead
+     * during bulk operations.
      */
-    private rebuildFtsIndex;
+    optimize(): Promise<void>;
     /**
      * Execute vector search with quality filtering
      * Architecture: Semantic search → Filter (maxDistance, grouping) → Keyword boost → File filter (maxFiles)

package/dist/vectordb/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/vectordb/index.ts"],"names":[],"mappings":"AAIA,OAAO,EAKL,KAAK,YAAY,EAEjB,KAAK,WAAW,EAChB,KAAK,iBAAiB,EACvB,MAAM,YAAY,CAAA;AAGnB,YAAY,EAAE,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,YAAY,CAAA;AAMzE;;;;;;;GAOG;AACH,qBAAa,WAAW;IACtB,OAAO,CAAC,EAAE,CAA0B;IACpC,OAAO,CAAC,KAAK,CAAqB;IAClC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAmB;IAC1C,OAAO,CAAC,UAAU,CAAQ;gBAEd,MAAM,EAAE,iBAAiB;IAIrC;;OAEG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAkCjC;;;;OAIG;IACG,YAAY,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAoCnD;;;;OAIG;IACG,YAAY,CAAC,MAAM,EAAE,WAAW,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;IA2CxD;;;;OAIG;YACW,cAAc;IAyC5B;;;;OAIG;YACW,mBAAmB;IAcjC;;;;OAIG;YACW,eAAe;IAU7B;;;;;;;;;;;;OAYG;IACG,MAAM,CAAC,WAAW,EAAE,MAAM,EAAE,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,KAAK,SAAK,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IAuE5F;;;;OAIG;IACG,SAAS,IAAI,OAAO,CAAC;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;IAyCzF;;;;OAIG;IACG,SAAS,IAAI,OAAO,CAAC;QACzB,aAAa,EAAE,MAAM,CAAA;QACrB,UAAU,EAAE,MAAM,CAAA;QAClB,WAAW,EAAE,MAAM,CAAA;QACnB,MAAM,EAAE,MAAM,CAAA;QACd,eAAe,EAAE,OAAO,CAAA;QACxB,UAAU,EAAE,QAAQ,GAAG,aAAa,CAAA;KACrC,CAAC;CAwCH"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/vectordb/index.ts"],"names":[],"mappings":"AAIA,OAAO,EAKL,KAAK,YAAY,EAEjB,KAAK,WAAW,EAChB,KAAK,iBAAiB,EACvB,MAAM,YAAY,CAAA;AAGnB,YAAY,EAAE,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,YAAY,CAAA;AAMzE;;;;;;;GAOG;AACH,qBAAa,WAAW;IACtB,OAAO,CAAC,EAAE,CAA0B;IACpC,OAAO,CAAC,KAAK,CAAqB;IAClC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAmB;IAC1C,OAAO,CAAC,UAAU,CAAQ;gBAEd,MAAM,EAAE,iBAAiB;IAIrC;;OAEG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAkCjC;;;;OAIG;IACG,YAAY,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAiCnD;;;;OAIG;IACG,YAAY,CAAC,MAAM,EAAE,WAAW,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;IAwCxD;;;;OAIG;YACW,cAAc;IAyC5B;;;;OAIG;YACW,mBAAmB;IAcjC;;;;;;;OAOG;IACG,QAAQ,IAAI,OAAO,CAAC,IAAI,CAAC;IAS/B;;;;;;;;;;;;OAYG;IACG,MAAM,CAAC,WAAW,EAAE,MAAM,EAAE,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,KAAK,SAAK,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IAuE5F;;;;OAIG;IACG,SAAS,IAAI,OAAO,CAAC;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;IAyCzF;;;;OAIG;IACG,SAAS,IAAI,OAAO,CAAC;QACzB,aAAa,EAAE,MAAM,CAAA;QACrB,UAAU,EAAE,MAAM,CAAA;QAClB,WAAW,EAAE,MAAM,CAAA;QACnB,MAAM,EAAE,MAAM,CAAA;QACd,eAAe,EAAE,OAAO,CAAA;QACxB,UAAU,EAAE,QAAQ,GAAG,aAAa,CAAA;KACrC,CAAC;CAwCH"}

package/dist/vectordb/index.js

@@ -72,8 +72,6 @@ export class VectorStore {
             // Note: Field names are case-sensitive, use backticks for camelCase fields
             await this.table.delete(`\`filePath\` = '${escapedFilePath}'`);
             console.error(`VectorStore: Deleted chunks for file "${filePath}"`);
-            // Rebuild FTS index after deleting data
-            await this.rebuildFtsIndex();
         }
         catch (error) {
             // If error occurs, output warning log
@@ -124,8 +122,6 @@ export class VectorStore {
                 // Add data to existing table
                 const records = chunks.map((chunk) => chunk);
                 await this.table.add(records);
-                // Rebuild FTS index after adding new data
-                await this.rebuildFtsIndex();
             }
             console.error(`VectorStore: Inserted ${chunks.length} chunks`);
         }
@@ -191,15 +187,17 @@ export class VectorStore {
         }
     }
     /**
-     * Rebuild FTS index after data changes (insert/delete)
-     * LanceDB OSS requires explicit optimize() call to update FTS index
-     * Also cleans up old index versions to prevent storage bloat
+     * Optimize table: compact fragments, update FTS index, and clean up old versions.
+     * LanceDB OSS requires explicit optimize() call to update FTS index.
+     *
+     * Callers are responsible for deciding when to invoke this (e.g., once per
+     * ingest rather than after every insert/delete) to avoid O(n²) overhead
+     * during bulk operations.
      */
-    async rebuildFtsIndex() {
+    async optimize() {
         if (!this.table || !this.ftsEnabled) {
             return;
         }
-        // Optimize table and clean up old versions
         const cleanupThreshold = new Date(Date.now() - FTS_CLEANUP_THRESHOLD_MS);
         await this.table.optimize({ cleanupOlderThan: cleanupThreshold });
     }

package/dist/vectordb/index.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "mcp-local-rag",
-  "version": "0.8.1",
+  "version": "0.9.0",
   "description": "Local RAG MCP Server - Easy-to-setup document search with minimal configuration",
   "type": "module",
   "main": "dist/index.js",

package/skills/mcp-local-rag/SKILL.md

@@ -1,6 +1,6 @@
 ---
 name: mcp-local-rag
-description: Provides score interpretation (< 0.3 good, > 0.5 skip), query optimization, and source naming for query_documents, ingest_file, ingest_data tools. Use this skill when working with RAG, searching documents, ingesting files, saving web content, or handling PDF, HTML, DOCX, TXT, Markdown.
+description: Use this skill when ingesting or querying documents with MCP local RAG, including `query_documents`, `ingest_file`, `ingest_data`, and CLI bulk ingestion. Covers query refinement, result score interpretation, and source metadata conventions for PDF, HTML, DOCX, TXT, and Markdown. Not for general file operations or SQL/database queries.
 ---
 
 # MCP Local RAG Skills
@@ -13,6 +13,7 @@ description: Provides score interpretation (< 0.3 good, > 0.5 skip), query optim
 | `ingest_data` | Raw content (HTML, text) with source URL |
 | `query_documents` | Semantic + keyword hybrid search |
 | `delete_file` / `list_files` / `status` | Management |
+| `npx mcp-local-rag ingest` | Multiple files or directory (shell) |
 
 ## Search: Core Rules
 
@@ -112,9 +113,34 @@ ingest_data({
 
 Re-ingest same source to update. Use same source in `delete_file` to remove.
 
+### CLI ingest
+
+For multiple files or directory ingestion. Prefer over repeated `ingest_file` calls.
+
+| Scenario | Use |
+|----------|-----|
+| Single file from user request | `ingest_file` |
+| Multiple files or a directory | `npx mcp-local-rag ingest <path>` |
+| Raw HTML/text content | `ingest_data` (CLI does not support stdin) |
+
+```bash
+npx mcp-local-rag ingest [options] <path>
+```
+
+- `<path>`: file or directory (recursively scans supported formats)
+- Use `--help` for all options and defaults
+- Options must match MCP server config — see [cli-ingest.md](references/cli-ingest.md)
+
+**Output interpretation:**
+
+- Exit code 0: all files succeeded
+- Exit code 1: one or more files failed — report failed files to user
+- `SKIPPED (0 chunks)`: file was empty or too short, counted as success
+
 ## References
 
 For edge cases and examples:
 - [html-ingestion.md](references/html-ingestion.md) - URL normalization, SPA handling
 - [query-optimization.md](references/query-optimization.md) - Query patterns by intent
 - [result-refinement.md](references/result-refinement.md) - Contradiction resolution, chunking
+- [cli-ingest.md](references/cli-ingest.md) - CLI options, config matching

package/skills/mcp-local-rag/references/cli-ingest.md

@@ -0,0 +1,45 @@
+# CLI Ingest Reference
+
+## Command
+
+```bash
+npx mcp-local-rag ingest [options] <path>
+```
+
+## Options
+
+| Option | Env Var | Default | Description |
+|--------|---------|---------|-------------|
+| `--db-path <path>` | `DB_PATH` | `./lancedb/` | LanceDB database path |
+| `--base-dir <path>` | `BASE_DIR` | cwd | Base directory for documents |
+| `--cache-dir <path>` | `CACHE_DIR` | `./models/` | Model cache directory |
+| `--model-name <name>` | `MODEL_NAME` | `Xenova/all-MiniLM-L6-v2` | Embedding model |
+| `--max-file-size <n>` | `MAX_FILE_SIZE` | `104857600` | Max file size in bytes |
+| `-h, --help` | — | — | Show usage with defaults |
+
+Priority: CLI flags > environment variables > defaults.
+
+## Config Matching
+
+When ingesting into an existing database, options **must match** the MCP server config — especially `--model-name`. Using a different embedding model against an existing database produces vectors in a different space, silently degrading search quality.
+
+## Output
+
+Output goes to stderr. Summary block:
+
+```
+--- Ingest Summary ---
+Succeeded: 12
+Failed:    1
+Total chunks: 247
+```
+
+- Exit code 0: all succeeded
+- Exit code 1: one or more failed
+- `SKIPPED (0 chunks)`: empty or too-short file, counted as success
+
+## Supported Formats
+
+Same as MCP tools: `.pdf`, `.docx`, `.txt`, `.md`, `.html`
+
+Directory mode recursively scans for these extensions, excluding `dbPath` and `cacheDir` paths.