mcp-local-rag 0.15.4 → 0.16.0

package/README.md

@@ -213,6 +213,8 @@ Pass the `filePath` and `chunkIndex` from the search result. The response includ
 "Show RAG server status"           # Check system health
 ```
 
+Narrow the listing with `scope` on `list_files` — one path prefix or a list of them. Results are restricted to files reachable at a path equal to or under a prefix (exact-or-descendant); for example, `"/docs/api"` matches `/docs/api` and `/docs/api/auth.md` but not `/docs/apiv2`. Raw-data sources (from `ingest_data`) stay listed regardless of scope. On large volumes, scope also speeds up the listing by skipping out-of-scope directories during the scan.
+
 ### Using as CLI
 
 All MCP tools are also available as CLI commands — no MCP server needed:
@@ -223,6 +225,7 @@ npx mcp-local-rag query "authentication API"    # Search documents
 npx mcp-local-rag query "auth" --scope /docs/api --scope /docs/guide  # Restrict to path prefixes (repeatable)
 npx mcp-local-rag read-neighbors --file-path /abs/path.md --chunk-index 5  # Expand context
 npx mcp-local-rag list                          # Show ingestion status
+npx mcp-local-rag list --scope /docs/api --scope /docs/guide  # Restrict listing to path prefixes (repeatable)
 npx mcp-local-rag status                        # Database stats
 npx mcp-local-rag delete ./docs/old.pdf         # Remove content
 npx mcp-local-rag delete --source "https://..."  # Remove by source URL

package/dist/cli/list.d.ts

@@ -6,6 +6,13 @@ interface ListCliOptions {
      * provided.
      */
     baseDirs?: string[] | undefined;
+    /**
+     * Collected `--scope` path prefixes in CLI order. Repeatable: multiple flags
+     * union. Each value is trimmed and validated non-empty at parse time.
+     * `undefined` means no scope (list every file); trailing-separator
+     * equivalence is applied downstream by `scope-match.ts`.
+     */
+    scope?: string[] | undefined;
 }
 interface ParsedArgs {
     options: ListCliOptions;

package/dist/cli/list.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"list.d.ts","sourceRoot":"","sources":["../../src/cli/list.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AA4CjD,UAAU,cAAc;IACtB;;;;OAIG;IACH,QAAQ,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAA;CAChC;AAED,UAAU,UAAU;IAClB,OAAO,EAAE,cAAc,CAAA;IACvB,IAAI,EAAE,OAAO,CAAA;CACd;AA8DD;;;;;GAKG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,UAAU,CAsCpD;AAMD;;;;GAIG;AACH,wBAAsB,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,aAAa,GAAE,aAAkB,GAAG,OAAO,CAAC,IAAI,CAAC,CA0I9F"}
+{"version":3,"file":"list.d.ts","sourceRoot":"","sources":["../../src/cli/list.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AA4DjD,UAAU,cAAc;IACtB;;;;OAIG;IACH,QAAQ,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAA;IAC/B;;;;;OAKG;IACH,KAAK,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAA;CAC7B;AAED,UAAU,UAAU;IAClB,OAAO,EAAE,cAAc,CAAA;IACvB,IAAI,EAAE,OAAO,CAAA;CACd;AA+DD;;;;;GAKG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,UAAU,CAsDpD;AAMD;;;;GAIG;AACH,wBAAsB,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,aAAa,GAAE,aAAkB,GAAG,OAAO,CAAC,IAAI,CAAC,CAuJ9F"}

package/dist/cli/list.js

@@ -2,18 +2,21 @@
 import { resolve, sep } from 'node:path';
 import { displayPath } from '../utils/base-dirs.js';
 import { MAX_SCAN_DEPTH } from '../utils/limits.js';
-import { extractSourceFromPath, looksLikeRawDataPath } from '../utils/raw-data-utils.js';
+import { classifyIngestedSources } from '../utils/list-sources.js';
 import { bfsCollectSupportedFiles, realpathForMatch } from '../utils/scan.js';
+import { nonAbsolutePrefixes } from '../utils/scope-match.js';
 import { createVectorStore, formatCliError, resolveCliBaseDirsOrExit } from './common.js';
-import { consumeBaseDirArg, resolveGlobalConfig, validatePath } from './options.js';
+import { consumeBaseDirArg, requireFlagValue, resolveGlobalConfig, validatePath, } from './options.js';
 /**
  * Bounded BFS scan of a single root, up to `MAX_SCAN_DEPTH` levels deep.
  * Delegates the traversal to {@link bfsCollectSupportedFiles} and renders the
  * `list`-specific warnings: per-directory read failures and the depth-limit
  * warning, both annotated with `displayPath`.
  */
-async function scanRoot(root, excludePaths) {
-    const { files, unreadableDirs, depthLimited } = await bfsCollectSupportedFiles(root, excludePaths);
+async function scanRoot(root, excludePaths, scope) {
+    // `scope` threads into the walker as the 4th positional arg (after `maxDepth`);
+    // pass `undefined` for `maxDepth` to keep the default bound.
+    const { files, unreadableDirs, depthLimited } = await bfsCollectSupportedFiles(root, excludePaths, undefined, scope);
     const warnings = [];
     for (const { dirPath, code } of unreadableDirs) {
         warnings.push(`cannot read directory: ${displayPath(dirPath)} (${code})`);
@@ -32,6 +35,7 @@ List files and their ingestion status.
 
 Options:
   --base-dir <path>      Base directory to scan for files (repeatable: pass once per root; default: BASE_DIRS/BASE_DIR env or cwd)
+  --scope <prefix>       Restrict results to a path prefix (must be absolute; a relative prefix matches nothing; repeatable for multiple prefixes)
   -h, --help             Show this help
 
 Global options (must appear before "list"):
@@ -71,6 +75,22 @@ export function parseArgs(args) {
                 i = valueIndex + 1;
                 break;
             }
+            case '--scope': {
+                // Repeatable prefix filter (mirrors `query --scope`). Trim and reject
+                // empty/whitespace locally — the same non-empty check `normalizeScope`
+                // applies at the MCP boundary, kept module-private there. Trailing-
+                // separator equivalence is handled downstream in `scope-match.ts`.
+                const value = requireFlagValue(args, i, '--scope').trim();
+                if (value.length === 0) {
+                    console.error('--scope value must not be empty');
+                    process.exit(1);
+                }
+                const scope = options.scope ?? [];
+                scope.push(value);
+                options.scope = scope;
+                i += 2;
+                break;
+            }
             default:
                 if (arg.startsWith('-')) {
                     console.error(`Unknown option: ${arg}`);
@@ -123,6 +143,15 @@ export async function runList(args, globalOptions = {}) {
     for (const warning of baseDirsWarnings) {
         console.error(warning.message);
     }
+    // A non-absolute `--scope` prefix matches nothing (scan matching is
+    // absolute-path based) but silently yields an empty result for that prefix.
+    // Surface it as a non-fatal stderr warning without changing result semantics
+    // or the exit code — relative is unhelpful, not an error.
+    if (options.scope) {
+        for (const prefix of nonAbsolutePrefixes(options.scope)) {
+            console.error(`Warning [scope]: "${prefix}" is not an absolute path; it matches nothing.`);
+        }
+    }
     // Scan/display the normal-path roots (`rawBaseDirs`) so scanned paths match
     // the resolve()-stored DB keys; the realpath'd `baseDirs` are the security
     // boundary, not used here. `rawBaseDirs[0]` is the legacy `baseDir` field.
@@ -160,7 +189,7 @@ export async function runList(args, globalOptions = {}) {
         const keyToRoot = new Map();
         const keyToScanned = new Map();
         for (const root of rawBaseDirs) {
-            const { files: perRoot, warnings: rootWarnings } = await scanRoot(root, excludePaths);
+            const { files: perRoot, warnings: rootWarnings } = await scanRoot(root, excludePaths, options.scope);
             for (const warning of rootWarnings) {
                 console.error(`Warning [${root}]: ${warning}`);
             }
@@ -191,17 +220,11 @@ export async function runList(args, globalOptions = {}) {
         });
         files.sort((a, b) => (a.filePath < b.filePath ? -1 : a.filePath > b.filePath ? 1 : 0));
         // Content ingested via ingest_data plus orphaned DB entries: ingested
-        // entries whose identity key matched no scanned file.
-        const sources = ingestedKeyed
-            .filter(({ key }) => !matchedKeys.has(key))
-            .map(({ entry: f }) => {
-            if (looksLikeRawDataPath(f.filePath)) {
-                const source = extractSourceFromPath(f.filePath);
-                if (source)
-                    return { source, chunkCount: f.chunkCount, timestamp: f.timestamp };
-            }
-            return { filePath: f.filePath, chunkCount: f.chunkCount, timestamp: f.timestamp };
-        });
+        // entries whose identity key matched no scanned file. With `scope` present,
+        // raw-data sources are always kept while real-file entries are scope-filtered
+        // (see `classifyIngestedSources`); scope-absent behavior is unchanged. The
+        // same helper backs the MCP `list_files` surface, so both stay identical.
+        const sources = classifyIngestedSources(ingestedKeyed, matchedKeys, options.scope);
         const result = {
             baseDirs: [...rawBaseDirs],
             baseDir,

package/dist/cli/list.js.map

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package/dist/server/index.d.ts

@@ -1,5 +1,5 @@
 import { type RagContentBlock } from './error-utils.js';
-import type { DeleteFileInput, IngestDataInput, IngestFileInput, QueryDocumentsInput, RAGServerConfig, ReadChunkNeighborsInput } from './types.js';
+import type { DeleteFileInput, IngestDataInput, IngestFileInput, ListFilesInput, QueryDocumentsInput, RAGServerConfig, ReadChunkNeighborsInput } from './types.js';
 /** RAG server compliant with MCP Protocol */
 export declare class RAGServer {
     private readonly server;
@@ -112,7 +112,7 @@ export declare class RAGServer {
      *   producing-root annotation.
      * - Excludes `dbPath` and `cacheDir` uniformly across every root.
      */
-    handleListFiles(): Promise<{
+    handleListFiles(input?: ListFilesInput): Promise<{
         content: RagContentBlock[];
     }>;
     /**

package/dist/server/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/server/index.ts"],"names":[],"mappings":"AAuCA,OAAO,EAIL,KAAK,eAAe,EAGrB,MAAM,kBAAkB,CAAA;AAQzB,OAAO,KAAK,EACV,eAAe,EAGf,eAAe,EACf,eAAe,EAEf,cAAc,EAEd,mBAAmB,EAEnB,eAAe,EACf,uBAAuB,EAGxB,MAAM,YAAY,CAAA;AAuBnB,6CAA6C;AAC7C,qBAAa,SAAS;IACpB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAQ;IAC/B,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAa;IACzC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAU;IACnC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAiB;IACzC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAgB;IACvC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAQ;IAC/B;;;;;;;OAOG;IACH,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAmB;IAC5C;;;;OAIG;IACH,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAmB;IAC/C,oFAAoF;IACpF,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAQ;IACnC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAQ;IAEjC,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAU;IACvC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAU;IACzC;;;;;;OAMG;IACH,OAAO,CAAC,QAAQ,CAAC,WAAW,CAA4B;IACxD,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAQ;IACvC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAoB;gBAE/B,MAAM,EAAE,eAAe;IAqEnC;;;;;;;;;;;;;OAaG;IACH,OAAO,CAAC,cAAc;IAMtB;;;;;OAKG;IACH,OAAO,CAAC,YAAY;IAIpB;;OAEG;IACH,OAAO,CAAC,aAAa;IAqDrB;;OAEG;IACG,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IAKjC;;OAEG;IACG,oBAAoB,CAAC,IAAI,EAAE,mBAAmB,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAA;KAAE,CAAC;IAqD9F;;OAEG;IACG,gBAAgB,CAAC,IAAI,EAAE,eAAe,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAA;KAAE,CAAC;IAyLtF;;;;;;;;OAQG;IACG,gBAAgB,CAAC,IAAI,EAAE,eAAe,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAA;KAAE,CAAC;IA2EtF;;;;;;;;;;;;;;;;;;OAkBG;IACG,eAAe,CAAC,KAAK,GAAE,cAAmB,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAA;KAAE,CAAC;IAoG1F;;OAEG;IACG,YAAY,IAAI,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAA;KAAE,CAAC;IAyB7D;;;;OAIG;IACG,gBAAgB,CAAC,IAAI,EAAE,eAAe,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAA;KAAE,CAAC;IAwFtF;;;;;OAKG;IACG,wBAAwB,CAC5B,IAAI,EAAE,uBAAuB,GAC5B,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAA;KAAE,CAAC;IA2F1C;;OAEG;IACG,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC;IAM1B;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;CAM7B"}

package/dist/server/index.js

@@ -11,14 +11,16 @@ import { prepareVisualPdfChunks } from '../ingest/visual.js';
 import { parseHtml } from '../parser/html-parser.js';
 import { DocumentParser } from '../parser/index.js';
 import { extractMarkdownTitle, extractTxtTitle } from '../parser/title-extractor.js';
+import { classifyIngestedSources } from '../utils/list-sources.js';
 import { checkRawDataArtifacts, extractSourceFromPath, generateMetaJsonPath, generateRawDataPath, isEnoent, isPathInRawDataDir, isPathInRawDataDirLexical, loadMetaJson, looksLikeRawDataPath, saveMetaJson, saveRawData, } from '../utils/raw-data-utils.js';
 import { realpathForMatch } from '../utils/scan.js';
+import { nonAbsolutePrefixes } from '../utils/scope-match.js';
 import { VectorStore } from '../vectordb/index.js';
 import { DatabaseError } from '../vectordb/types.js';
 import { appendConfigWarnings, buildConfigErrorBlock, logError, toMcpError, } from './error-utils.js';
 import { normalizeBaseDirs, scanBaseDir } from './list-scanner.js';
 import { toolDefinitions } from './tool-definitions.js';
-import { parseIngestDataInput, parseQueryDocumentsInput } from './tool-input.js';
+import { parseIngestDataInput, parseListFilesInput, parseQueryDocumentsInput, } from './tool-input.js';
 /**
  * Per-tool client-message policy consumed by the central dispatcher mapper
  * (`toMcpError(error, context)`). The `prefix`, when present, is prepended to
@@ -197,7 +199,7 @@ export class RAGServer {
                     case 'read_chunk_neighbors':
                         return await this.handleReadChunkNeighbors(request.params.arguments);
                     case 'list_files':
-                        return await this.handleListFiles();
+                        return await this.handleListFiles(parseListFilesInput(request.params.arguments));
                     case 'status':
                         return await this.handleStatus();
                     default:
@@ -506,11 +508,20 @@ export class RAGServer {
      *   producing-root annotation.
      * - Excludes `dbPath` and `cacheDir` uniformly across every root.
      */
-    async handleListFiles() {
+    async handleListFiles(input = {}) {
         // Root-dependent tool: fail fast on configError BEFORE any DB / FS access.
         // `assertConfigOk` throws `BaseDirsConfigError` (mapped to InvalidParams by
         // the central dispatcher); no local error-mapping catch here.
         this.assertConfigOk();
+        // `input.scope` is parser-normalized to `string[]`, but the shared input
+        // type admits `string | string[]`; array-wrap once (mirrors query_documents)
+        // so scope threads uniformly into the walker and the sources classifier.
+        // Undefined scope leaves both the scan and the sources split unchanged.
+        const scope = input.scope === undefined
+            ? undefined
+            : Array.isArray(input.scope)
+                ? input.scope
+                : [input.scope];
         // Get all ingested entries and index them by file IDENTITY (realpath), so
         // a file ingested via a different spelling (symlinked prefix or alias)
         // still matches the scan. Storage/display stay normal-path; realpath is
@@ -527,7 +538,7 @@ export class RAGServer {
         const matchedKeys = new Set();
         const scanWarnings = [];
         for (const baseDir of this.rawBaseDirs) {
-            const { files: scanned, warnings: rootWarnings } = await scanBaseDir(baseDir, this.excludePaths);
+            const { files: scanned, warnings: rootWarnings } = await scanBaseDir(baseDir, this.excludePaths, scope);
             for (const w of rootWarnings) {
                 scanWarnings.push(`[${baseDir}] ${w}`);
             }
@@ -553,17 +564,10 @@ export class RAGServer {
             }
         }
         // Content ingested via ingest_data plus orphaned DB entries: ingested
-        // entries whose identity key matched no scanned file.
-        const sources = ingestedKeyed
-            .filter(({ key }) => !matchedKeys.has(key))
-            .map(({ entry: f }) => {
-            if (looksLikeRawDataPath(f.filePath)) {
-                const source = extractSourceFromPath(f.filePath);
-                if (source)
-                    return { source, chunkCount: f.chunkCount, timestamp: f.timestamp };
-            }
-            return { filePath: f.filePath, chunkCount: f.chunkCount, timestamp: f.timestamp };
-        });
+        // entries whose identity key matched no scanned file. With `scope` present,
+        // raw-data sources are always kept while real-file entries are scope-filtered
+        // (see `classifyIngestedSources`); scope-absent behavior is unchanged.
+        const sources = classifyIngestedSources(ingestedKeyed, matchedKeys, scope);
         const result = {
             baseDir: this.rawBaseDir,
             baseDirs: [...this.rawBaseDirs],
@@ -579,6 +583,18 @@ export class RAGServer {
         for (const w of scanWarnings) {
             content.push({ type: 'text', text: `Warning: ${w}` });
         }
+        // A non-absolute scope prefix matches nothing (the scan is absolute-path
+        // based) but yields no result-level signal, so surface it as a non-fatal
+        // warning block. Result semantics are unchanged — the prefix still matches
+        // nothing; this only makes the silent miss visible to the client.
+        if (scope !== undefined) {
+            for (const prefix of nonAbsolutePrefixes(scope)) {
+                content.push({
+                    type: 'text',
+                    text: `Warning: scope prefix "${prefix}" is not absolute; it matches nothing.`,
+                });
+            }
+        }
         return { content: this.withWarnings(content) };
     }
     /**

package/dist/server/index.js.map

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package/dist/server/list-scanner.d.ts

@@ -13,8 +13,13 @@ import type { RAGServerConfig } from './types.js';
  *    hide files under the other roots, so the multi-root contract makes this
  *    asymmetry user-visible, so the policy is now best-effort per root.
  *  - Symlinks are skipped (mirrors the CLI ingest walker).
+ *  - When `scope` is provided (non-empty), the predicate is pushed into the
+ *    traversal: a directory is visited only if it is in-scope or an ancestor of
+ *    some scope prefix, and a file is collected only if it is in-scope. A
+ *    baseDir intersecting no prefix is skipped without any `readdir`. An
+ *    absent/empty `scope` leaves traversal and collection unchanged.
  */
-export declare function scanBaseDir(baseDir: string, excludePaths: readonly string[]): Promise<{
+export declare function scanBaseDir(baseDir: string, excludePaths: readonly string[], scope?: string[]): Promise<{
     files: string[];
     warnings: string[];
 }>;

package/dist/server/list-scanner.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"list-scanner.d.ts","sourceRoot":"","sources":["../../src/server/list-scanner.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAA;AAEjD;;;;;;;;;;;;;;GAcG;AACH,wBAAsB,WAAW,CAC/B,OAAO,EAAE,MAAM,EACf,YAAY,EAAE,SAAS,MAAM,EAAE,GAC9B,OAAO,CAAC;IAAE,KAAK,EAAE,MAAM,EAAE,CAAC;IAAC,QAAQ,EAAE,MAAM,EAAE,CAAA;CAAE,CAAC,CAqDlD;AAED;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,eAAe,GAAG;IAC1D,QAAQ,EAAE,MAAM,EAAE,CAAA;IAClB,OAAO,EAAE,MAAM,CAAA;CAChB,CASA"}
+{"version":3,"file":"list-scanner.d.ts","sourceRoot":"","sources":["../../src/server/list-scanner.ts"],"names":[],"mappings":"AAWA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAA;AAEjD;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAsB,WAAW,CAC/B,OAAO,EAAE,MAAM,EACf,YAAY,EAAE,SAAS,MAAM,EAAE,EAC/B,KAAK,CAAC,EAAE,MAAM,EAAE,GACf,OAAO,CAAC;IAAE,KAAK,EAAE,MAAM,EAAE,CAAC;IAAC,QAAQ,EAAE,MAAM,EAAE,CAAA;CAAE,CAAC,CAgElD;AAED;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,eAAe,GAAG;IAC1D,QAAQ,EAAE,MAAM,EAAE,CAAA;IAClB,OAAO,EAAE,MAAM,CAAA;CAChB,CASA"}

package/dist/server/list-scanner.js

@@ -7,6 +7,7 @@ import { extname, join } from 'node:path';
 import { SUPPORTED_EXTENSIONS } from '../parser/index.js';
 import { displayPath } from '../utils/base-dirs.js';
 import { MAX_SCAN_DEPTH } from '../utils/limits.js';
+import { isInScope, shouldVisitDir } from '../utils/scope-match.js';
 /**
  * Bounded BFS scan of a single base directory for supported files,
  * excluding system-managed paths (dbPath, cacheDir). Returns sorted
@@ -21,12 +22,24 @@ import { MAX_SCAN_DEPTH } from '../utils/limits.js';
  *    hide files under the other roots, so the multi-root contract makes this
  *    asymmetry user-visible, so the policy is now best-effort per root.
  *  - Symlinks are skipped (mirrors the CLI ingest walker).
+ *  - When `scope` is provided (non-empty), the predicate is pushed into the
+ *    traversal: a directory is visited only if it is in-scope or an ancestor of
+ *    some scope prefix, and a file is collected only if it is in-scope. A
+ *    baseDir intersecting no prefix is skipped without any `readdir`. An
+ *    absent/empty `scope` leaves traversal and collection unchanged.
  */
-export async function scanBaseDir(baseDir, excludePaths) {
+export async function scanBaseDir(baseDir, excludePaths, scope) {
     const files = [];
     const warnings = [];
     let depthLimited = false;
-    const queue = [{ dirPath: baseDir, depth: 0 }];
+    // Scope pushdown (shared with bfsCollectSupportedFiles via scope-match): visit
+    // a directory only if it is in-scope or an ancestor of the scoped subtree, and
+    // collect a file only if it is in-scope. A baseDir intersecting no prefix is
+    // skipped without any `readdir`; absent scope leaves traversal/collection
+    // unchanged.
+    const queue = shouldVisitDir(baseDir, scope)
+        ? [{ dirPath: baseDir, depth: 0 }]
+        : [];
     while (queue.length > 0) {
         const { dirPath, depth } = queue.shift();
         if (depth >= MAX_SCAN_DEPTH) {
@@ -57,10 +70,14 @@ export async function scanBaseDir(baseDir, excludePaths) {
             if (excludePaths.some((ep) => fullPath.startsWith(ep)))
                 continue;
             if (entry.isDirectory()) {
-                queue.push({ dirPath: fullPath, depth: depth + 1 });
+                if (shouldVisitDir(fullPath, scope)) {
+                    queue.push({ dirPath: fullPath, depth: depth + 1 });
+                }
             }
             else if (entry.isFile() && SUPPORTED_EXTENSIONS.has(extname(entry.name).toLowerCase())) {
-                files.push(fullPath);
+                if (isInScope(fullPath, scope)) {
+                    files.push(fullPath);
+                }
             }
         }
     }

package/dist/server/list-scanner.js.map

@@ -1 +1 @@
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package/dist/server/tool-definitions.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"tool-definitions.d.ts","sourceRoot":"","sources":["../../src/server/tool-definitions.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,oCAAoC,CAAA;AAE9D;;;;GAIG;AACH,eAAO,MAAM,eAAe,EAAE,IAAI,EAyJjC,CAAA"}
+{"version":3,"file":"tool-definitions.d.ts","sourceRoot":"","sources":["../../src/server/tool-definitions.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,oCAAoC,CAAA;AAE9D;;;;GAIG;AACH,eAAO,MAAM,eAAe,EAAE,IAAI,EAkKjC,CAAA"}

package/dist/server/tool-definitions.js

@@ -101,8 +101,16 @@ export const toolDefinitions = [
     },
     {
         name: 'list_files',
-        description: 'List supported files (PDF, DOCX, TXT, MD) under the configured base directories and whether each is ingested. Returns { baseDirs, files, sources }; sources holds ingested items outside the base dirs (web pages, clipboard, etc.).',
-        inputSchema: { type: 'object', properties: {} },
+        description: 'List supported files (PDF, DOCX, TXT, MD) under the configured base directories and whether each is ingested. Returns { baseDirs, files, sources }; sources lists ingested items reported apart from the file scan, chiefly ingest_data content (web pages, clipboard, etc.).',
+        inputSchema: {
+            type: 'object',
+            properties: {
+                scope: {
+                    oneOf: [{ type: 'string' }, { type: 'array', items: { type: 'string' } }],
+                    description: 'Optional absolute path prefix(es) — one string or a list (unioned) — restricting the listing to files reachable at a path equal to or under a prefix within the base directories. "/docs/api" matches "/docs/api/x.md" but not "/docs/apiv2". Must be absolute (server OS style); a relative prefix matches nothing. Scope filters files by their scan path; ingest_data sources, which have no base-directory path, are always listed.',
+                },
+            },
+        },
     },
     {
         name: 'status',

package/dist/server/tool-definitions.js.map

@@ -1 +1 @@
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package/dist/server/tool-input.d.ts

@@ -1,10 +1,16 @@
-import type { IngestDataInput, QueryDocumentsInput } from './types.js';
+import type { IngestDataInput, ListFilesInput, QueryDocumentsInput } from './types.js';
 /**
  * Validate `query_documents` arguments. `query` must be a non-empty string;
  * `limit`, when provided, must be a positive integer (the handler defaults it
  * to 10 when absent).
  */
 export declare function parseQueryDocumentsInput(raw: unknown): QueryDocumentsInput;
+/**
+ * Validate `list_files` arguments. The tool historically takes no arguments, so
+ * an omitted `arguments` (`undefined`) or `{}` is accepted as "no scope". When
+ * `scope` is present, it is normalized the same way as `query_documents`.
+ */
+export declare function parseListFilesInput(raw: unknown): ListFilesInput;
 /**
  * Validate `ingest_data` arguments. `content` must be a non-empty string;
  * `metadata` must be an object with a non-empty `source` string and a `format`

package/dist/server/tool-input.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"tool-input.d.ts","sourceRoot":"","sources":["../../src/server/tool-input.ts"],"names":[],"mappings":"AAYA,OAAO,KAAK,EAAE,eAAe,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AAiCtE;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,GAAG,EAAE,OAAO,GAAG,mBAAmB,CA0B1E;AAED;;;;GAIG;AACH,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,OAAO,GAAG,eAAe,CAuBlE"}
+{"version":3,"file":"tool-input.d.ts","sourceRoot":"","sources":["../../src/server/tool-input.ts"],"names":[],"mappings":"AAYA,OAAO,KAAK,EAAE,eAAe,EAAE,cAAc,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AAiCtF;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,GAAG,EAAE,OAAO,GAAG,mBAAmB,CA0B1E;AAED;;;;GAIG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,OAAO,GAAG,cAAc,CAchE;AAED;;;;GAIG;AACH,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,OAAO,GAAG,eAAe,CAuBlE"}

package/dist/server/tool-input.js

@@ -58,6 +58,23 @@ export function parseQueryDocumentsInput(raw) {
     }
     return input;
 }
+/**
+ * Validate `list_files` arguments. The tool historically takes no arguments, so
+ * an omitted `arguments` (`undefined`) or `{}` is accepted as "no scope". When
+ * `scope` is present, it is normalized the same way as `query_documents`.
+ */
+export function parseListFilesInput(raw) {
+    // Preserve the no-argument contract: `asRecord` rejects `undefined`, so
+    // short-circuit before it to avoid a spurious McpError on no-arg calls.
+    if (raw === undefined) {
+        return {};
+    }
+    const { scope } = asRecord(raw, 'list_files');
+    if (scope === undefined) {
+        return {};
+    }
+    return { scope: normalizeScope(scope) };
+}
 /**
  * Validate `ingest_data` arguments. `content` must be a non-empty string;
  * `metadata` must be an object with a non-empty `source` string and a `format`

package/dist/server/tool-input.js.map

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package/dist/server/types.d.ts

@@ -78,6 +78,13 @@ export interface QueryDocumentsInput {
     /** Path prefix scope (one or a list); the parser normalizes to `string[]`. */
     scope?: string | string[];
 }
+/**
+ * list_files tool input
+ */
+export interface ListFilesInput {
+    /** Path prefix scope (one or a list); the parser normalizes to `string[]`. */
+    scope?: string | string[];
+}
 /**
  * ingest_file tool input
  */

package/dist/server/types.d.ts.map

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package/dist/utils/list-sources.d.ts

@@ -0,0 +1,47 @@
+/**
+ * An ingested entry paired with its identity key (`realpathForMatch` of the
+ * stored `filePath`). Only the fields the classifier reads are required, so the
+ * caller's richer row type is consumed structurally.
+ */
+export interface KeyedIngestedEntry {
+    entry: {
+        filePath: string;
+        chunkCount: number;
+        timestamp: string;
+    };
+    key: string;
+}
+/**
+ * A classified source: a raw-data entry restored to its original `source`, or a
+ * real-file / orphaned entry keyed by `filePath`. Structurally compatible with
+ * the `SourceEntry` union both surfaces already return (no type-move refactor).
+ */
+export type ClassifiedSource = {
+    source: string;
+    chunkCount: number;
+    timestamp: string;
+} | {
+    filePath: string;
+    chunkCount: number;
+    timestamp: string;
+};
+/**
+ * Classify the ingested entries that matched no scanned file into `sources`.
+ *
+ * Base filter (always): keep only entries whose `key` is absent from
+ * `matchedKeys`.
+ *
+ * When `scope` is present (non-empty): raw-data entries
+ * (`looksLikeRawDataPath`) have no filesystem path under a base directory, so
+ * they are always emitted regardless of scope; real-file entries are kept only
+ * when their stored `filePath` is under scope (`matchesAnyScope`) — a real-file
+ * entry outside scope is dropped so it appears in neither `files[]` (already
+ * pruned from the scan) nor `sources[]` (no orphan misclassification), while an
+ * unmatched real-file entry under scope remains an orphan source.
+ *
+ * When `scope` is absent (or empty): behavior is unchanged from the pre-extraction
+ * inline block — every unmatched entry is emitted, raw-data as `{ source }` when
+ * `extractSourceFromPath` yields one, else as `{ filePath }`.
+ */
+export declare function classifyIngestedSources(ingestedKeyed: readonly KeyedIngestedEntry[], matchedKeys: ReadonlySet<string>, scope?: string[]): ClassifiedSource[];
+//# sourceMappingURL=list-sources.d.ts.map

package/dist/utils/list-sources.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"list-sources.d.ts","sourceRoot":"","sources":["../../src/utils/list-sources.ts"],"names":[],"mappings":"AAaA;;;;GAIG;AACH,MAAM,WAAW,kBAAkB;IACjC,KAAK,EAAE;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,CAAA;IAClE,GAAG,EAAE,MAAM,CAAA;CACZ;AAED;;;;GAIG;AACH,MAAM,MAAM,gBAAgB,GACxB;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,UAAU,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAA;CAAE,GACzD;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,UAAU,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAA;CAAE,CAAA;AAE/D;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,uBAAuB,CACrC,aAAa,EAAE,SAAS,kBAAkB,EAAE,EAC5C,WAAW,EAAE,WAAW,CAAC,MAAM,CAAC,EAChC,KAAK,CAAC,EAAE,MAAM,EAAE,GACf,gBAAgB,EAAE,CAiBpB"}

package/dist/utils/list-sources.js

@@ -0,0 +1,49 @@
+// Pure `sources` classifier shared by the MCP `list_files` handler
+// (`src/server/index.ts`) and the `list` CLI (`src/cli/list.ts`). Extracted
+// from the byte-for-byte-identical inline blocks in both surfaces so the
+// raw-data / real-file scope branch lives in one place, mirroring the
+// drift-avoidance rationale behind the shared `scope-match.ts` matcher.
+//
+// `sources` are ingested entries whose identity key matched no scanned file:
+// content ingested via `ingest_data` (raw-data paths) plus orphaned DB entries
+// for real files not currently on disk under a scanned root.
+import { extractSourceFromPath, looksLikeRawDataPath } from './raw-data-utils.js';
+import { matchesAnyScope } from './scope-match.js';
+/**
+ * Classify the ingested entries that matched no scanned file into `sources`.
+ *
+ * Base filter (always): keep only entries whose `key` is absent from
+ * `matchedKeys`.
+ *
+ * When `scope` is present (non-empty): raw-data entries
+ * (`looksLikeRawDataPath`) have no filesystem path under a base directory, so
+ * they are always emitted regardless of scope; real-file entries are kept only
+ * when their stored `filePath` is under scope (`matchesAnyScope`) — a real-file
+ * entry outside scope is dropped so it appears in neither `files[]` (already
+ * pruned from the scan) nor `sources[]` (no orphan misclassification), while an
+ * unmatched real-file entry under scope remains an orphan source.
+ *
+ * When `scope` is absent (or empty): behavior is unchanged from the pre-extraction
+ * inline block — every unmatched entry is emitted, raw-data as `{ source }` when
+ * `extractSourceFromPath` yields one, else as `{ filePath }`.
+ */
+export function classifyIngestedSources(ingestedKeyed, matchedKeys, scope) {
+    const scopePrefixes = scope && scope.length > 0 ? scope : undefined;
+    return ingestedKeyed
+        .filter(({ key }) => !matchedKeys.has(key))
+        .filter(({ entry }) => {
+        if (!scopePrefixes)
+            return true;
+        // Raw-data sources are exempt from scope; real-file entries respect it.
+        return looksLikeRawDataPath(entry.filePath) || matchesAnyScope(entry.filePath, scopePrefixes);
+    })
+        .map(({ entry }) => {
+        if (looksLikeRawDataPath(entry.filePath)) {
+            const source = extractSourceFromPath(entry.filePath);
+            if (source)
+                return { source, chunkCount: entry.chunkCount, timestamp: entry.timestamp };
+        }
+        return { filePath: entry.filePath, chunkCount: entry.chunkCount, timestamp: entry.timestamp };
+    });
+}
+//# sourceMappingURL=list-sources.js.map

package/dist/utils/list-sources.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"list-sources.js","sourceRoot":"","sources":["../../src/utils/list-sources.ts"],"names":[],"mappings":"AAAA,mEAAmE;AACnE,4EAA4E;AAC5E,yEAAyE;AACzE,sEAAsE;AACtE,wEAAwE;AACxE,EAAE;AACF,6EAA6E;AAC7E,+EAA+E;AAC/E,6DAA6D;AAE7D,OAAO,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAA;AACjF,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAqBlD;;;;;;;;;;;;;;;;;GAiBG;AACH,MAAM,UAAU,uBAAuB,CACrC,aAA4C,EAC5C,WAAgC,EAChC,KAAgB;IAEhB,MAAM,aAAa,GAAG,KAAK,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAA;IAEnE,OAAO,aAAa;SACjB,MAAM,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;SAC1C,MAAM,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE;QACpB,IAAI,CAAC,aAAa;YAAE,OAAO,IAAI,CAAA;QAC/B,wEAAwE;QACxE,OAAO,oBAAoB,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,eAAe,CAAC,KAAK,CAAC,QAAQ,EAAE,aAAa,CAAC,CAAA;IAC/F,CAAC,CAAC;SACD,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE;QACjB,IAAI,oBAAoB,CAAC,KAAK,CAAC,QAAQ,CAAC,EAAE,CAAC;YACzC,MAAM,MAAM,GAAG,qBAAqB,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAA;YACpD,IAAI,MAAM;gBAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,KAAK,CAAC,UAAU,EAAE,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,CAAA;QACzF,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,UAAU,EAAE,KAAK,CAAC,UAAU,EAAE,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,CAAA;IAC/F,CAAC,CAAC,CAAA;AACN,CAAC"}

package/dist/utils/scan.d.ts

@@ -28,8 +28,14 @@ export interface DirScanResult {
  * prefix are filtered out. A per-directory `readdir` failure is captured into
  * `unreadableDirs` and does not abort the scan (best-effort per directory).
  *
+ * When `scope` is provided (non-empty), the predicate is pushed into the
+ * traversal: a directory is visited only if it is in-scope or an ancestor of
+ * some scope prefix, and a file is collected only if it is in-scope. A root that
+ * intersects no prefix is skipped without any `readdir`. An absent/empty `scope`
+ * leaves traversal and collection byte-for-byte unchanged.
+ *
  * Does not sort, dedupe, or emit warnings — callers handle those so their
  * existing output contracts are preserved.
  */
-export declare function bfsCollectSupportedFiles(rootPath: string, excludePaths: readonly string[], maxDepth?: number): Promise<DirScanResult>;
+export declare function bfsCollectSupportedFiles(rootPath: string, excludePaths: readonly string[], maxDepth?: number, scope?: string[]): Promise<DirScanResult>;
 //# sourceMappingURL=scan.d.ts.map

package/dist/utils/scan.d.ts.map

@@ -1 +1 @@
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package/dist/utils/scan.js

@@ -12,6 +12,7 @@ import { readdir, realpath } from 'node:fs/promises';
 import { extname, join } from 'node:path';
 import { SUPPORTED_EXTENSIONS } from '../parser/index.js';
 import { MAX_SCAN_DEPTH } from './limits.js';
+import { isInScope, shouldVisitDir } from './scope-match.js';
 /**
  * Canonical identity key for the `list`/`list_files` cross-reference: a file's
  * realpath, falling back to the input path when realpath fails (orphaned or
@@ -34,14 +35,26 @@ export async function realpathForMatch(filePath) {
  * prefix are filtered out. A per-directory `readdir` failure is captured into
  * `unreadableDirs` and does not abort the scan (best-effort per directory).
  *
+ * When `scope` is provided (non-empty), the predicate is pushed into the
+ * traversal: a directory is visited only if it is in-scope or an ancestor of
+ * some scope prefix, and a file is collected only if it is in-scope. A root that
+ * intersects no prefix is skipped without any `readdir`. An absent/empty `scope`
+ * leaves traversal and collection byte-for-byte unchanged.
+ *
  * Does not sort, dedupe, or emit warnings — callers handle those so their
  * existing output contracts are preserved.
  */
-export async function bfsCollectSupportedFiles(rootPath, excludePaths, maxDepth = MAX_SCAN_DEPTH) {
+export async function bfsCollectSupportedFiles(rootPath, excludePaths, maxDepth = MAX_SCAN_DEPTH, scope) {
     const files = [];
     const unreadableDirs = [];
     let depthLimited = false;
-    const queue = [{ dirPath: rootPath, depth: 0 }];
+    // Scope pushdown (shared with scanBaseDir via scope-match): visit a directory
+    // only if it is in-scope or an ancestor of the scoped subtree, and collect a
+    // file only if it is in-scope. A root intersecting no prefix is skipped
+    // without any `readdir`; absent scope leaves traversal/collection unchanged.
+    const queue = shouldVisitDir(rootPath, scope)
+        ? [{ dirPath: rootPath, depth: 0 }]
+        : [];
     while (queue.length > 0) {
         const { dirPath, depth } = queue.shift();
         if (depth >= maxDepth) {
@@ -72,10 +85,14 @@ export async function bfsCollectSupportedFiles(rootPath, excludePaths, maxDepth
             if (excludePaths.some((ep) => fullPath.startsWith(ep)))
                 continue;
             if (entry.isDirectory()) {
-                queue.push({ dirPath: fullPath, depth: depth + 1 });
+                if (shouldVisitDir(fullPath, scope)) {
+                    queue.push({ dirPath: fullPath, depth: depth + 1 });
+                }
             }
             else if (entry.isFile() && SUPPORTED_EXTENSIONS.has(extname(entry.name).toLowerCase())) {
-                files.push(fullPath);
+                if (isInScope(fullPath, scope)) {
+                    files.push(fullPath);
+                }
             }
         }
     }

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package/dist/utils/scope-match.d.ts

@@ -0,0 +1,37 @@
+/**
+ * True when `path` equals `prefix` or is a descendant of it, using a separator
+ * boundary so `/foo/bar` does not match `/foo/barista`. The separator is derived
+ * from `prefix`; trailing separators on `prefix` are normalized so `/a/b`,
+ * `/a/b/`, and `/a/b//` are equivalent. `path` is compared verbatim, matching
+ * the SQL contract in `buildPrefixPredicate`.
+ */
+export declare function isUnderOrEqual(path: string, prefix: string): boolean;
+/**
+ * True when `path` is under-or-equal any prefix in `prefixes` (union). Empty or
+ * undefined `prefixes` semantics are the caller's concern; an empty list yields
+ * false (membership against no prefixes).
+ */
+export declare function matchesAnyScope(path: string, prefixes: string[]): boolean;
+/**
+ * Return the prefixes in `scope` that are NOT absolute paths (server-OS path
+ * style, via `node:path` `isAbsolute` — the same path style scope matching
+ * uses). A non-absolute prefix matches nothing under the exact-or-descendant
+ * contract, so both list surfaces surface these as non-fatal warnings while
+ * preserving the "matches nothing" result semantics. Input order is preserved.
+ */
+export declare function nonAbsolutePrefixes(scope: string[]): string[];
+/**
+ * Directory-visit predicate for the scoped BFS walk, shared by both walkers so
+ * the boundary semantics live in one place. Visit `dir` when there is no scope,
+ * when `dir` is in-scope (under-or-equal a prefix), or when `dir` is an ancestor
+ * of some prefix (must be descended to reach the scoped subtree). An absent or
+ * empty `scope` visits every directory (traversal unchanged).
+ */
+export declare function shouldVisitDir(dir: string, scope?: string[]): boolean;
+/**
+ * File-collect predicate for the scoped BFS walk, shared by both walkers.
+ * Collect `path` when there is no scope, or when `path` is in-scope. An absent
+ * or empty `scope` collects every supported file (collection unchanged).
+ */
+export declare function isInScope(path: string, scope?: string[]): boolean;
+//# sourceMappingURL=scope-match.d.ts.map

package/dist/utils/scope-match.d.ts.map

@@ -0,0 +1 @@
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package/dist/utils/scope-match.js

@@ -0,0 +1,82 @@
+// Boundary-safe, exact-or-descendant path prefix matcher shared by both BFS
+// walkers and both list surfaces (MCP `list_files` and the `list` CLI).
+//
+// This is the JS counterpart of `vectordb`'s SQL `buildPrefixPredicate`
+// (`src/vectordb/index.ts`): both implement the same exact-or-descendant
+// contract (`path = prefix OR path startsWith prefix + separator`) with the
+// same separator-boundary and trailing-separator normalization, so `/foo/bar`
+// matches `/foo/bar` and `/foo/bar/x.md` but not `/foo/barista`. Both reference
+// #146's boundary rules — a change to one must be mirrored in the other.
+import { isAbsolute, sep as PATH_SEP } from 'node:path';
+// Derive the boundary separator from the prefix, mirroring `buildPrefixPredicate`:
+// a `\`-style prefix uses `\`, a `/`-style prefix uses `/`, otherwise the
+// platform separator. (Caveat inherited from the SQL side: on posix, `\` is a
+// legal filename char, so a `/`-path containing `\` mis-derives the separator.)
+function deriveSeparator(prefix) {
+    return prefix.includes('\\') ? '\\' : prefix.includes('/') ? '/' : PATH_SEP;
+}
+// Strip trailing separators so `/a/b`, `/a/b/`, `/a/b//` normalize alike. A
+// prefix of only separators (e.g. a lone posix root `/`) is kept as a single
+// separator so its descendant boundary is `/<sep>` rather than empty.
+function stripTrailingSeparators(prefix, separator) {
+    let end = prefix.length;
+    while (end > 0 && prefix[end - 1] === separator) {
+        end--;
+    }
+    if (end === 0) {
+        return separator;
+    }
+    return prefix.slice(0, end);
+}
+/**
+ * True when `path` equals `prefix` or is a descendant of it, using a separator
+ * boundary so `/foo/bar` does not match `/foo/barista`. The separator is derived
+ * from `prefix`; trailing separators on `prefix` are normalized so `/a/b`,
+ * `/a/b/`, and `/a/b//` are equivalent. `path` is compared verbatim, matching
+ * the SQL contract in `buildPrefixPredicate`.
+ */
+export function isUnderOrEqual(path, prefix) {
+    const separator = deriveSeparator(prefix);
+    const normalized = stripTrailingSeparators(prefix, separator);
+    const descendant = normalized.endsWith(separator) ? normalized : normalized + separator;
+    return path === normalized || path.startsWith(descendant);
+}
+/**
+ * True when `path` is under-or-equal any prefix in `prefixes` (union). Empty or
+ * undefined `prefixes` semantics are the caller's concern; an empty list yields
+ * false (membership against no prefixes).
+ */
+export function matchesAnyScope(path, prefixes) {
+    return prefixes.some((prefix) => isUnderOrEqual(path, prefix));
+}
+/**
+ * Return the prefixes in `scope` that are NOT absolute paths (server-OS path
+ * style, via `node:path` `isAbsolute` — the same path style scope matching
+ * uses). A non-absolute prefix matches nothing under the exact-or-descendant
+ * contract, so both list surfaces surface these as non-fatal warnings while
+ * preserving the "matches nothing" result semantics. Input order is preserved.
+ */
+export function nonAbsolutePrefixes(scope) {
+    return scope.filter((prefix) => !isAbsolute(prefix));
+}
+/**
+ * Directory-visit predicate for the scoped BFS walk, shared by both walkers so
+ * the boundary semantics live in one place. Visit `dir` when there is no scope,
+ * when `dir` is in-scope (under-or-equal a prefix), or when `dir` is an ancestor
+ * of some prefix (must be descended to reach the scoped subtree). An absent or
+ * empty `scope` visits every directory (traversal unchanged).
+ */
+export function shouldVisitDir(dir, scope) {
+    if (!scope || scope.length === 0)
+        return true;
+    return matchesAnyScope(dir, scope) || scope.some((prefix) => isUnderOrEqual(prefix, dir));
+}
+/**
+ * File-collect predicate for the scoped BFS walk, shared by both walkers.
+ * Collect `path` when there is no scope, or when `path` is in-scope. An absent
+ * or empty `scope` collects every supported file (collection unchanged).
+ */
+export function isInScope(path, scope) {
+    return !scope || scope.length === 0 || matchesAnyScope(path, scope);
+}
+//# sourceMappingURL=scope-match.js.map

package/dist/utils/scope-match.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "mcp-local-rag",
-  "version": "0.15.4",
+  "version": "0.16.0",
   "description": "Local RAG MCP Server - Easy-to-setup document search with minimal configuration",
   "type": "module",
   "main": "dist/index.js",

package/skills/mcp-local-rag/SKILL.md

@@ -13,7 +13,7 @@ description: Search, ingest, expand chunk context, or manage local documents via
 | `ingest_data` | — | Raw content (HTML, text) with source URL |
 | `query_documents` | `npx mcp-local-rag query <text>` | Semantic + keyword hybrid search; optional `scope` to limit to a path prefix |
 | `delete_file` | `npx mcp-local-rag delete <path>` | Remove ingested content |
-| `list_files` | `npx mcp-local-rag list` | File ingestion status |
+| `list_files` | `npx mcp-local-rag list [--scope <prefix>]` | File ingestion status; optional `scope` to limit to a path prefix (reachable scan path) |
 | `status` | `npx mcp-local-rag status` | Database stats |
 | `read_chunk_neighbors` | `npx mcp-local-rag read-neighbors` | Read N chunks adjacent to a known chunkIndex (context expansion; call after `query_documents` or grep) |
 

package/skills/mcp-local-rag/references/cli-reference.md

@@ -73,12 +73,13 @@ Output: JSON array to stdout.
 ### list
 
 ```bash
-npx mcp-local-rag [global-options] list [--base-dir <path>]...
+npx mcp-local-rag [global-options] list [--base-dir <path>]... [--scope <prefix>]...
 ```
 
 | Option | Env Var | Default | Description |
 |--------|---------|---------|-------------|
 | `--base-dir <path>` | `BASE_DIR` / `BASE_DIRS` | cwd | Base directory to scan. Repeatable; CLI roots replace env roots. |
+| `--scope <prefix>` | — | — | Restrict the listing to files whose scan path is equal to or under an absolute prefix. Repeat for multiple prefixes (unioned). Relative prefixes match nothing. `ingest_data` `sources` are always listed regardless of scope. |
 
 Output: JSON to stdout. The result includes `baseDirs: string[]` (all effective roots) plus a legacy `baseDir: string` (first effective root after normalization and nested-root pruning). Each file entry is annotated with the `baseDir` that produced it. Raw-data/orphaned entries remain under `sources` without a root annotation.