mcp-local-rag 0.14.0 → 0.14.1

package/README.md

@@ -121,7 +121,7 @@ Re-ingesting the same file replaces the old version automatically.
 
 ##### Ingesting PDFs with figures (visual mode)
 
-PDFs with charts, tables, or diagrams can optionally add local VLM-generated captions to the related text chunks, giving visual content some searchable representation in the same vector + FTS pipeline.
+PDFs with charts, tables, or diagrams can optionally add local VLM-generated captions to the document index, giving visual content some searchable representation in the same vector + FTS pipeline. Captions are auxiliary text — not image search, not OCR, and not a faithful transcription of the figure.
 
 **Via MCP**:
 ```
@@ -133,9 +133,34 @@ PDFs with charts, tables, or diagrams can optionally add local VLM-generated cap
 npx mcp-local-rag ingest ./docs/spec.pdf --visual
 ```
 
-Captions are inlined into the corresponding page's chunks as `[Visual content on page N: …]`. They flow through the existing chunker and embedder unchanged — no schema differences, no separate index.
+Each caption is emitted as its own chunk with the envelope `[Visual content on page N: …]`, alongside the page-body chunks. It flows through the existing embedder and FTS index — no schema differences, no separate index.
 
-Visual mode is opt-in; normal ingest does not load the VLM. When visual mode is enabled, the VLM (`HuggingFaceTB/SmolVLM-256M-Instruct`) is cached under `CACHE_DIR` (default: `./models/`). The first download is hundreds of MB. The model identifier and quantization variant are fixed in this release; per-page VLM failures are tolerated — that page proceeds with text only.
+Visual mode is opt-in; normal ingest does not load the VLM. Per-page VLM failures are tolerated — that page proceeds with text only.
+
+###### Choosing a visual-quality profile
+
+Visual mode offers two profiles, selected per ingest call:
+
+| Profile | Model | Disk (cache) | Per-page inference | Suited for |
+|---|---|---|---|---|
+| `fast` (default) | `HuggingFaceTB/SmolVLM-256M-Instruct` | ~250 MB | baseline | Light visual indexing, quick first-run setup. |
+| `quality` | `onnx-community/Qwen2.5-VL-3B-Instruct-ONNX` | ~2.9 GB | ~2× `fast` | Figures with in-image text (axis labels, panel sub-labels, annotations) where caption fidelity matters more than inference time. |
+
+The numbers above are measured on CPU during development on the project's probe PDFs; they may shift with model updates or differ on your hardware.
+
+**Via MCP** — `ingest_file` accepts an optional `visualQuality` parameter (enum: `'fast' | 'quality'`, default `'fast'`; ignored when `visual` is false):
+```
+"Ingest /Users/me/docs/research-paper.pdf with visual: true and visualQuality: 'quality'"
+```
+
+**Via CLI** — `--visual-quality fast|quality` (default `fast`; silently ignored when `--visual` is absent):
+```bash
+npx mcp-local-rag ingest ./docs/research-paper.pdf --visual --visual-quality quality
+```
+
+Profile model identifiers and quantization variants are fixed per release. Both profiles share the same `CACHE_DIR` (default: `./models/`); the first run on each profile downloads its model.
+
+> **Behavior change from v0.14.0**: Captions are now emitted as dedicated chunks rather than appended to the page text before chunking. As a side effect, `metadata.fileSize` for visual ingests no longer includes the caption character count — it measures the post-extraction body length only. The underlying PDF is unchanged; only the reported `fileSize` for visual-ingested PDFs may shrink across the release boundary.
 
 > **Security note**: Visual captions are derived from PDF contents and may inherit attacker-controlled text. Downstream LLM consumers should treat retrieved chunks as untrusted data, not as instructions. The `[Visual content on page N: …]` envelope helps consumers distinguish caption text from prose.
 
@@ -394,7 +419,11 @@ The embedding model (~90MB) downloads on first use. Takes 1-2 minutes, then work
 
 - **Path restriction**: Only files within `BASE_DIR` are accessible
 - **Local only**: No network requests after model download
-- **Model source**: Official HuggingFace repository ([verify here](https://huggingface.co/Xenova/all-MiniLM-L6-v2))
+- **Model sources** (all official HuggingFace repositories):
+  - Embedder: [`Xenova/all-MiniLM-L6-v2`](https://huggingface.co/Xenova/all-MiniLM-L6-v2)
+  - Visual `fast` profile: [`HuggingFaceTB/SmolVLM-256M-Instruct`](https://huggingface.co/HuggingFaceTB/SmolVLM-256M-Instruct)
+  - Visual `quality` profile: [`onnx-community/Qwen2.5-VL-3B-Instruct-ONNX`](https://huggingface.co/onnx-community/Qwen2.5-VL-3B-Instruct-ONNX)
+- **Visual caption fidelity**: The `quality` profile reproduces in-image text more faithfully than `fast`. Both profiles output captions wrapped as `[Visual content on page N: …]`, but a faithful reproduction means attacker-controlled in-image text — including characters like `]` that visually close the envelope — can appear verbatim in retrieved chunks. Downstream LLM consumers should treat retrieved chunks as untrusted data, not as instructions, regardless of envelope shape.
 
 <details>
 <summary><strong>Performance</strong></summary>
@@ -453,7 +482,7 @@ Ensure file paths are within `BASE_DIR`. Use absolute paths.
 Yes. After model download, nothing leaves your machine. Verify with network monitoring.
 
 **Can I use this offline?**
-Yes, after the required models are cached locally. Text ingest/search needs the embedding model. PDF visual mode is opt-in and also needs the VLM model on first use; the download is hundreds of MB for the default `q4` variant and is cached under `CACHE_DIR` (default: `./models/`).
+Yes, after the required models are cached locally. Text ingest/search needs the embedding model. PDF visual mode is opt-in and also needs the VLM model on first use; the download is ~250 MB for the default `fast` profile (SmolVLM-256M) or ~2.9 GB for the `quality` profile (Qwen2.5-VL-3B), cached under `CACHE_DIR` (default: `./models/`).
 
 **How does this compare to cloud RAG?**
 Cloud services offer better accuracy at scale but require sending data externally. This trades some accuracy for complete privacy and zero runtime cost.

package/dist/cli/ingest.d.ts

@@ -1,6 +1,7 @@
 import { SemanticChunker } from '../chunker/index.js';
 import type { Embedder } from '../embedder/index.js';
 import { DocumentParser } from '../parser/index.js';
+import type { QualityProfile } from '../pdf-visual/types.js';
 import type { VectorStore } from '../vectordb/index.js';
 import type { GlobalOptions, ResolvedGlobalConfig } from './options.js';
 interface IngestConfig {
@@ -16,6 +17,12 @@ interface IngestCliOptions {
     maxFileSize?: number | undefined;
     chunkMinLength?: number | undefined;
     visual?: boolean | undefined;
+    /**
+     * Visual-quality profile selector. Only meaningful when `visual` is true;
+     * silently ignored otherwise (mirrors the existing `--visual` precedent
+     * of silently coercing for non-PDF files). Defaults to `'fast'`.
+     */
+    visualQuality?: QualityProfile | undefined;
 }
 interface ParsedArgs {
     positional: string | undefined;
@@ -35,22 +42,22 @@ export declare function parseArgs(args: string[]): ParsedArgs;
  */
 export declare function resolveConfig(globalConfig: ResolvedGlobalConfig, ingestOptions?: IngestCliOptions): IngestConfig;
 /**
- * Options for `ingestSingleFile`. Discriminated on `visual` so the visual path
- * is type-only callable with the VLM config it actually needs:
+ * Options for `ingestSingleFile`. Discriminated on `visual` so the visual
+ * path is type-only callable with the VLM config it actually needs:
  *  - `visual` absent or `false` → no VLM fields required (and not accepted).
- *  - `visual: true` → `vlmModelName` and `cacheDir` required; `device` optional.
+ *  - `visual: true` → `profile` and `cacheDir` required; `device` optional.
  *
- * Why a union rather than always-required fields: making `vlmModelName` /
- * `cacheDir` unconditionally required forces non-visual callers (default-mode
- * tests, future direct-import callers that only ingest non-PDF files) to
- * fabricate VLM config they will never use. The visual-true variant still
- * catches accidental misuse at compile time, which was the original goal.
+ * Why a union rather than always-required fields: making the VLM fields
+ * unconditionally required forces non-visual callers (default-mode tests,
+ * future direct-import callers that only ingest non-PDF files) to fabricate
+ * VLM config they will never use. The visual-true variant still catches
+ * accidental misuse at compile time, which was the original goal.
  */
 export type IngestSingleFileOptions = {
     visual?: false | undefined;
 } | {
     visual: true;
-    vlmModelName: string;
+    profile: QualityProfile;
     cacheDir: string;
     device?: string | undefined;
 };

package/dist/cli/ingest.d.ts.map

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package/dist/cli/ingest.js

@@ -26,11 +26,12 @@ const HELP_TEXT = `Usage: mcp-local-rag [global-options] ingest [options] <path>
 Ingest a single file or all supported files under a directory.
 
 Options:
-  --base-dir <path>        Base directory for documents (default: cwd)
-  --max-file-size <n>      Max file size in bytes (default: ${INGEST_DEFAULTS.maxFileSize})
-  --chunk-min-length <n>   Minimum chunk length in characters (default: 50, range: 1-10000)
-  --visual                 Enable VLM captioning for PDF figure pages (PDFs only; no effect on other types)
-  -h, --help               Show this help
+  --base-dir <path>          Base directory for documents (default: cwd)
+  --max-file-size <n>        Max file size in bytes (default: ${INGEST_DEFAULTS.maxFileSize})
+  --chunk-min-length <n>     Minimum chunk length in characters (default: 50, range: 1-10000)
+  --visual                   Enable VLM captioning for PDF figure pages (PDFs only; no effect on other types)
+  --visual-quality <profile> VLM profile when --visual is set: fast (default, lightweight) or quality (Qwen2.5-VL-3B, ~10x cache, ~2x inference)
+  -h, --help                 Show this help
 
 Global options (must appear before "ingest"):
   --db-path <path>         LanceDB database path
@@ -100,6 +101,20 @@ export function parseArgs(args) {
                 options.visual = true;
                 i++;
                 break;
+            case '--visual-quality': {
+                const value = args[++i];
+                if (value === undefined || value.startsWith('-')) {
+                    console.error('Missing value for --visual-quality');
+                    process.exit(1);
+                }
+                if (value !== 'fast' && value !== 'quality') {
+                    console.error(`Invalid value for --visual-quality: "${value.slice(0, 100)}". Expected "fast" or "quality".`);
+                    process.exit(1);
+                }
+                options.visualQuality = value;
+                i++;
+                break;
+            }
             default:
                 if (arg.startsWith('-')) {
                     console.error(`Unknown option: ${arg}`);
@@ -255,11 +270,12 @@ export async function ingestSingleFile(filePath, parser, chunker, embedder, vect
         // inside that helper, not here). This branch keeps the CLI persistence
         // model (delete + insert; bulk-loop optimize at the end of `runIngest`).
         //
-        // `vlmModelName` and `cacheDir` are required by `prepareVisualPdfChunks`;
-        // the CLI bulk-loop always supplies them via the resolved `globalConfig`
-        // (see `resolveGlobalConfig` in `cli/options.ts`).
+        // `profile` and `cacheDir` are required by `prepareVisualPdfChunks`;
+        // the CLI bulk-loop always supplies them from the resolved CLI options
+        // (`runIngest` defaults `visualQuality` to `'fast'` when `--visual` is
+        // set without `--visual-quality`).
         const visualResult = await prepareVisualPdfChunks(filePath, parser, chunker, embedder, {
-            modelName: options.vlmModelName,
+            profile: options.profile,
             cacheDir: options.cacheDir,
             device: options.device,
         });
@@ -412,7 +428,11 @@ export async function runIngest(args, globalOptions = {}) {
                 const ingestOptions = options.visual
                     ? {
                         visual: true,
-                        vlmModelName: globalConfig.vlmModelName,
+                        // Default the profile to `'fast'` when `--visual-quality` was
+                        // not provided. The flag is silently ignored when `--visual`
+                        // itself is absent (mirrors the existing `--visual` precedent
+                        // of silently coercing for non-PDF files).
+                        profile: options.visualQuality ?? 'fast',
                         cacheDir: globalConfig.cacheDir,
                         device: resolveDevice(process.env['RAG_DEVICE']),
                     }

package/dist/cli/ingest.js.map

@@ -1 +1 @@
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package/dist/cli/options.d.ts

@@ -22,7 +22,6 @@ export interface GlobalOptions {
     dbPath?: string | undefined;
     cacheDir?: string | undefined;
     modelName?: string | undefined;
-    vlmModelName?: string | undefined;
 }
 export interface ParsedGlobalResult {
     globalOptions: GlobalOptions;
@@ -32,13 +31,11 @@ export interface ResolvedGlobalConfig {
     dbPath: string;
     cacheDir: string;
     modelName: string;
-    vlmModelName: string;
 }
 export declare const GLOBAL_DEFAULTS: {
     readonly dbPath: "./lancedb/";
     readonly cacheDir: "./models/";
     readonly modelName: "Xenova/all-MiniLM-L6-v2";
-    readonly vlmModelName: "HuggingFaceTB/SmolVLM-256M-Instruct";
 };
 export declare const ROOT_HELP_TEXT: string;
 /**

package/dist/cli/options.d.ts.map

@@ -1 +1 @@
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package/dist/cli/options.js

@@ -74,7 +74,6 @@ export const GLOBAL_DEFAULTS = {
     dbPath: './lancedb/',
     cacheDir: './models/',
     modelName: 'Xenova/all-MiniLM-L6-v2',
-    vlmModelName: 'HuggingFaceTB/SmolVLM-256M-Instruct',
 };
 // ============================================
 // Help
@@ -183,11 +182,6 @@ export function resolveGlobalConfig(options) {
     const dbPath = options.dbPath ?? process.env['DB_PATH'] ?? GLOBAL_DEFAULTS.dbPath;
     const cacheDir = options.cacheDir ?? process.env['CACHE_DIR'] ?? GLOBAL_DEFAULTS.cacheDir;
     const modelName = options.modelName ?? process.env['MODEL_NAME'] ?? GLOBAL_DEFAULTS.modelName;
-    // VLM model identifier and ONNX quantization variant are fixed for v1 — see
-    // server-main.ts for the rationale. `vlmModelName` is retained in the
-    // resolved config for the future model-family adapter; it is not
-    // user-tunable on the CLI surface yet.
-    const vlmModelName = GLOBAL_DEFAULTS.vlmModelName;
     // Validate paths
     const dbPathError = validatePath(dbPath, '--db-path');
     if (dbPathError) {
@@ -205,7 +199,7 @@ export function resolveGlobalConfig(options) {
         console.error(modelNameError);
         process.exit(1);
     }
-    return { dbPath, cacheDir, modelName, vlmModelName };
+    return { dbPath, cacheDir, modelName };
 }
 /**
  * Resolve RAG_DEVICE. The value is passed through to transformers.js — no

package/dist/cli/options.js.map

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package/dist/ingest/visual.d.ts

@@ -1,6 +1,7 @@
 import type { SemanticChunker, TextChunk } from '../chunker/index.js';
 import type { EmbedderInterface } from '../chunker/semantic-chunker.js';
 import type { DocumentParser } from '../parser/index.js';
+import type { QualityProfile } from '../pdf-visual/types.js';
 /**
  * Minimal parser surface consumed by `prepareVisualPdfChunks`. Only the
  * `parsePdfPages` method is required; we reuse `DocumentParser`'s type so the
@@ -13,12 +14,13 @@ export interface VisualPdfParser {
     parsePdfPages: DocumentParser['parsePdfPages'];
 }
 /**
- * Captioner configuration forwarded verbatim to `pdf-visual.createCaptioner`.
- * Mirrors `CaptionerConfig` from `src/pdf-visual/types.ts` without taking a
- * direct dependency on the dynamically-imported module (NFR-1).
+ * Captioner configuration forwarded to `pdf-visual.createCaptioner`. The
+ * `profile` selects the underlying VLM family (`fast` = SmolVLM-256M,
+ * `quality` = Qwen2.5-VL-3B); the actual model identifier lives inside the
+ * profile module.
  */
 export interface CaptionerConfig {
-    modelName: string;
+    profile: QualityProfile;
     cacheDir: string;
     /** Execution device passed through to the captioner model. */
     device?: string | undefined;

package/dist/ingest/visual.d.ts.map

@@ -1 +1 @@
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package/dist/ingest/visual.js

@@ -58,7 +58,7 @@ export async function prepareVisualPdfChunks(filePath, parser, chunker, embedder
     const { doc, metadataTitle, pages } = await parser.parsePdfPages(filePath, embedder);
     try {
         const candidates = pdfVisual.detectVisualCandidates(pages.map((p) => ({ pageNum: p.pageNum, stextJson: p.stextJson })), doc);
-        const enrichedPages = await pdfVisual.enrichPagesWithCaptions(pages, candidates, 
+        const { pages: enrichedPages, captions } = await pdfVisual.enrichPagesWithCaptions(pages, candidates, 
         // The dynamic import widens the doc type at the boundary; the parser
         // returned a real mupdf `Document` (caller-typed) so this is safe.
         doc, captioner);
@@ -66,11 +66,26 @@ export async function prepareVisualPdfChunks(filePath, parser, chunker, embedder
             .map((p) => p.text)
             .filter((t) => t.length > 0)
             .join('\n\n');
-        // Chunk + embed once on the joined visual+text content. Title is derived
-        // AFTER chunking from `chunks[0]?.text` (DD §Title resolution).
+        // Chunk + embed the page text WITHOUT captions inline. Captions are
+        // emitted as dedicated chunks below so the semantic chunker cannot split
+        // their internal Summary / Keywords structure on sentence-boundary
+        // vocabulary shifts.
         const { chunks, embeddings } = await buildChunksAndEmbeddings(text, null, chunker, embedder);
         const titleResult = extractPdfTitle(metadataTitle, chunks[0]?.text, basename(filePath), pages[0]?.page1FontHint);
         const title = titleResult.title || null;
+        // Append one dedicated chunk per caption. The `[Visual content on page N:
+        // …]` wrapper is applied here (previously applied in the orchestrator)
+        // so the caption chunk text matches the historical marker format used by
+        // downstream search.
+        if (captions.length > 0) {
+            const captionChunks = captions.map((c, i) => ({
+                text: `[Visual content on page ${c.pageNum}: ${c.text}]`,
+                index: chunks.length + i,
+            }));
+            const captionEmbeddings = await embedder.embedBatch(captionChunks.map((c) => c.text));
+            chunks.push(...captionChunks);
+            embeddings.push(...captionEmbeddings);
+        }
         return { chunks, embeddings, title, text };
     }
     finally {

package/dist/ingest/visual.js.map

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package/dist/pdf-visual/captioner.d.ts

@@ -1,21 +1,21 @@
 import type { Captioner, CaptionerConfig } from './types.js';
 /**
- * ONNX quantization variant. Pinned to the smallest viable variant for the v1
- * captioner. Exposed for tests only — production has no user-facing knob.
+ * ONNX quantization variant. Pinned to the smallest viable variant for both
+ * profiles. Exposed for tests only — production has no user-facing knob.
  */
 export declare const VLM_DTYPE = "q4";
 /**
- * Create a captioner backed by the configured VLM. Sets `env.cacheDir`
- * immediately so the global is correct even if the captioner is constructed
- * before any embedder initializes.
+ * Create a captioner for the requested visual-quality profile. Sets
+ * `env.cacheDir` immediately so the global is correct even if the captioner
+ * is constructed before any embedder initializes.
  *
  * Concurrency assumption: `env.cacheDir` is a process-global from
  * `@huggingface/transformers`. Setting it here at construction time is safe
  * for the current single-instance usage (one captioner per ingest run). If
- * the codebase ever constructs multiple captioners with DIFFERENT
- * `cacheDir` values in parallel, the last writer wins and the first
- * captioner's `from_pretrained` may resolve against the wrong cache. Avoid
- * concurrent construction with differing cacheDirs.
+ * the codebase ever constructs multiple captioners with DIFFERENT `cacheDir`
+ * values in parallel, the last writer wins and the first captioner's
+ * `from_pretrained` may resolve against the wrong cache. Avoid concurrent
+ * construction with differing cacheDirs.
  */
 export declare function createCaptioner(config: CaptionerConfig): Captioner;
 //# sourceMappingURL=captioner.d.ts.map

package/dist/pdf-visual/captioner.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"captioner.d.ts","sourceRoot":"","sources":["../../src/pdf-visual/captioner.ts"],"names":[],"mappings":"AA0BA,OAAO,KAAK,EAAE,SAAS,EAAE,eAAe,EAAE,MAAM,YAAY,CAAA;AAE5D;;;GAGG;AACH,eAAO,MAAM,SAAS,OAAO,CAAA;AAE7B;;;;;;;;;;;;GAYG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,eAAe,GAAG,SAAS,CA6BlE"}