mcp-codebase-intelligence 0.1.0 → 0.3.0

package/dist/project-manager.js

@@ -0,0 +1,479 @@
+import { existsSync, readFileSync, statSync, mkdirSync, writeFileSync } from "fs";
+import path from "path";
+import { initializeDatabase } from "./graph/schema.js";
+import { CodeGraph } from "./graph/code-graph.js";
+import { FileWatcher } from "./indexer/file-watcher.js";
+import { LspManager } from "./lsp/lsp-manager.js";
+import { logger } from "./utils/logger.js";
+const CODEGRAPH_DIR = path.join(process.env.HOME || process.env.USERPROFILE || "/tmp", ".codegraph");
+/**
+ * Detect git root by walking up from cwd
+ */
+function detectGitRoot(startDir) {
+    let dir = path.resolve(startDir);
+    while (true) {
+        if (existsSync(path.join(dir, ".git")))
+            return dir;
+        const parent = path.dirname(dir);
+        if (parent === dir)
+            return null;
+        dir = parent;
+    }
+}
+/**
+ * Detect monorepo workspace packages and return include paths
+ */
+function detectMonorepoIncludes(root) {
+    // pnpm-workspace.yaml
+    const pnpmPath = path.join(root, "pnpm-workspace.yaml");
+    if (existsSync(pnpmPath)) {
+        try {
+            const content = readFileSync(pnpmPath, "utf-8");
+            const packages = [];
+            // Simple YAML parsing — extract packages array entries
+            let inPackages = false;
+            for (const line of content.split("\n")) {
+                if (line.match(/^packages\s*:/)) {
+                    inPackages = true;
+                    continue;
+                }
+                if (inPackages) {
+                    const match = line.match(/^\s+-\s+['"]?([^'"]+)['"]?\s*$/);
+                    if (match) {
+                        packages.push(match[1].replace(/\/\*$/, ""));
+                    }
+                    else if (line.match(/^\S/)) {
+                        break; // next top-level key
+                    }
+                }
+            }
+            if (packages.length > 0) {
+                logger.info(`Detected pnpm workspace: ${packages.length} package patterns`);
+                return packages;
+            }
+        }
+        catch { /* ignore parse errors */ }
+    }
+    // lerna.json
+    const lernaPath = path.join(root, "lerna.json");
+    if (existsSync(lernaPath)) {
+        try {
+            const config = JSON.parse(readFileSync(lernaPath, "utf-8"));
+            const packages = (config.packages || ["packages/*"]).map((p) => p.replace(/\/\*$/, ""));
+            logger.info(`Detected lerna workspace: ${packages.length} package patterns`);
+            return packages;
+        }
+        catch { /* ignore */ }
+    }
+    // nx.json (check for workspace layout)
+    if (existsSync(path.join(root, "nx.json"))) {
+        const pkgJson = path.join(root, "package.json");
+        if (existsSync(pkgJson)) {
+            try {
+                const pkg = JSON.parse(readFileSync(pkgJson, "utf-8"));
+                if (pkg.workspaces) {
+                    const ws = Array.isArray(pkg.workspaces) ? pkg.workspaces : pkg.workspaces.packages || [];
+                    const packages = ws.map((p) => p.replace(/\/\*$/, ""));
+                    logger.info(`Detected nx workspace: ${packages.length} package patterns`);
+                    return packages;
+                }
+            }
+            catch { /* ignore */ }
+        }
+    }
+    // go.work
+    const goWorkPath = path.join(root, "go.work");
+    if (existsSync(goWorkPath)) {
+        try {
+            const content = readFileSync(goWorkPath, "utf-8");
+            const dirs = [];
+            let inUse = false;
+            for (const line of content.split("\n")) {
+                if (line.match(/^use\s*\(/)) {
+                    inUse = true;
+                    continue;
+                }
+                if (inUse && line.match(/^\)/)) {
+                    inUse = false;
+                    continue;
+                }
+                if (inUse) {
+                    const dir = line.trim();
+                    if (dir && !dir.startsWith("//"))
+                        dirs.push(dir);
+                }
+                // single-line: use ./foo
+                const single = line.match(/^use\s+(\S+)/);
+                if (single && !line.includes("("))
+                    dirs.push(single[1]);
+            }
+            if (dirs.length > 0) {
+                logger.info(`Detected Go workspace: ${dirs.length} modules`);
+                return dirs;
+            }
+        }
+        catch { /* ignore */ }
+    }
+    // Cargo.toml with [workspace]
+    const cargoPath = path.join(root, "Cargo.toml");
+    if (existsSync(cargoPath)) {
+        try {
+            const content = readFileSync(cargoPath, "utf-8");
+            if (content.includes("[workspace]")) {
+                const members = [];
+                let inMembers = false;
+                for (const line of content.split("\n")) {
+                    if (line.match(/^members\s*=/)) {
+                        inMembers = true;
+                        // Check for inline array: members = ["foo", "bar"]
+                        const inline = line.match(/\[([^\]]+)\]/);
+                        if (inline) {
+                            inline[1].split(",").forEach(m => {
+                                const trimmed = m.trim().replace(/['"]/g, "").replace(/\/\*$/, "");
+                                if (trimmed)
+                                    members.push(trimmed);
+                            });
+                            inMembers = false;
+                        }
+                        continue;
+                    }
+                    if (inMembers) {
+                        if (line.match(/^\s*\]/)) {
+                            inMembers = false;
+                            continue;
+                        }
+                        const m = line.match(/['"]([^'"]+)['"]/);
+                        if (m)
+                            members.push(m[1].replace(/\/\*$/, ""));
+                    }
+                }
+                if (members.length > 0) {
+                    logger.info(`Detected Cargo workspace: ${members.length} members`);
+                    return members;
+                }
+            }
+        }
+        catch { /* ignore */ }
+    }
+    // npm/yarn workspaces (package.json)
+    const pkgJsonPath = path.join(root, "package.json");
+    if (existsSync(pkgJsonPath)) {
+        try {
+            const pkg = JSON.parse(readFileSync(pkgJsonPath, "utf-8"));
+            if (pkg.workspaces) {
+                const ws = Array.isArray(pkg.workspaces) ? pkg.workspaces : pkg.workspaces.packages || [];
+                if (ws.length > 0) {
+                    const packages = ws.map((p) => p.replace(/\/\*$/, ""));
+                    logger.info(`Detected npm/yarn workspace: ${packages.length} package patterns`);
+                    return packages;
+                }
+            }
+        }
+        catch { /* ignore */ }
+    }
+    return null;
+}
+/**
+ * Find .codegraph.json walking up from startDir to git root
+ */
+function findLocalConfig(startDir) {
+    let dir = path.resolve(startDir);
+    const gitRoot = detectGitRoot(startDir);
+    const stopAt = gitRoot ? path.dirname(gitRoot) : path.parse(dir).root;
+    while (true) {
+        const configPath = path.join(dir, ".codegraph.json");
+        if (existsSync(configPath)) {
+            try {
+                const config = JSON.parse(readFileSync(configPath, "utf-8"));
+                logger.info(`Loaded config from ${configPath}`);
+                return { config, dir };
+            }
+            catch (err) {
+                logger.warn(`Invalid .codegraph.json at ${configPath}`, err);
+            }
+        }
+        if (dir === stopAt || dir === path.parse(dir).root)
+            break;
+        dir = path.dirname(dir);
+    }
+    return null;
+}
+/**
+ * Load user-level config from ~/.codegraph/config.json
+ */
+function loadUserConfig() {
+    const configPath = path.join(CODEGRAPH_DIR, "config.json");
+    if (existsSync(configPath)) {
+        try {
+            const config = JSON.parse(readFileSync(configPath, "utf-8"));
+            logger.info(`Loaded user config from ${configPath}`);
+            return config;
+        }
+        catch (err) {
+            logger.warn(`Invalid config at ${configPath}`, err);
+        }
+    }
+    return null;
+}
+/**
+ * Resolve a ProjectConfig into absolute root paths
+ */
+function resolveRoots(config, baseDir) {
+    const roots = [];
+    if (config.root) {
+        const absRoot = path.resolve(config.root);
+        if (config.include && config.include.length > 0) {
+            // Monorepo scoped — each include becomes a root
+            for (const inc of config.include) {
+                const absInc = path.resolve(absRoot, inc);
+                if (existsSync(absInc))
+                    roots.push(absInc);
+                else
+                    logger.warn(`Include path not found: ${absInc}`);
+            }
+        }
+        else {
+            roots.push(absRoot);
+        }
+    }
+    if (config.roots) {
+        for (const r of config.roots) {
+            const absRoot = path.resolve(r);
+            if (existsSync(absRoot))
+                roots.push(absRoot);
+            else
+                logger.warn(`Root not found: ${absRoot}`);
+        }
+    }
+    return [...new Set(roots)]; // deduplicate
+}
+/**
+ * Get DB path for a project
+ */
+function getDbPath(projectName) {
+    const graphsDir = path.join(CODEGRAPH_DIR, "graphs");
+    mkdirSync(graphsDir, { recursive: true });
+    return path.join(graphsDir, `${projectName}.db`);
+}
+/**
+ * Initialize a resolved project (DB, graph, watcher, LSP)
+ */
+function initProject(name, roots) {
+    const dbPath = getDbPath(name);
+    const db = initializeDatabase(dbPath);
+    const graph = new CodeGraph(db);
+    const watcher = new FileWatcher(roots, graph);
+    // LSP uses the first root as the workspace root
+    const lspManager = new LspManager(roots[0]);
+    return { name, roots, graph, watcher, lspManager, db };
+}
+export class ProjectManager {
+    projects = new Map();
+    _activeProject = null;
+    /**
+     * Resolve configuration and initialize all projects
+     */
+    async initialize() {
+        const cwd = process.cwd();
+        let projectConfigs = {};
+        // 1. Check for local .codegraph.json
+        const localConfig = findLocalConfig(cwd);
+        if (localConfig) {
+            for (const [name, config] of Object.entries(localConfig.config.projects || {})) {
+                // If root is relative or not set, resolve relative to config file location
+                if (config.root && !path.isAbsolute(config.root)) {
+                    config.root = path.resolve(localConfig.dir, config.root);
+                }
+                if (!config.root && !config.roots) {
+                    config.root = localConfig.dir;
+                }
+                projectConfigs[name] = config;
+            }
+        }
+        // 2. Check user-level config (merge, local takes precedence)
+        const userConfig = loadUserConfig();
+        if (userConfig) {
+            for (const [name, config] of Object.entries(userConfig.projects || {})) {
+                if (!projectConfigs[name]) {
+                    projectConfigs[name] = config;
+                }
+            }
+        }
+        // 3. Check PROJECT_ROOTS env
+        if (Object.keys(projectConfigs).length === 0 && process.env.PROJECT_ROOTS) {
+            const roots = process.env.PROJECT_ROOTS.split(",").map(r => r.trim()).filter(Boolean);
+            projectConfigs["default"] = { roots };
+        }
+        // 4. Check PROJECT_ROOT env (backwards compat)
+        if (Object.keys(projectConfigs).length === 0 && process.env.PROJECT_ROOT) {
+            projectConfigs["default"] = { root: process.env.PROJECT_ROOT };
+        }
+        // 5. Auto-detect from cwd
+        if (Object.keys(projectConfigs).length === 0) {
+            const gitRoot = detectGitRoot(cwd);
+            const root = gitRoot || cwd;
+            // Check for monorepo markers
+            const includes = detectMonorepoIncludes(root);
+            if (includes) {
+                projectConfigs["default"] = { root, include: includes };
+            }
+            else {
+                projectConfigs["default"] = { root };
+            }
+        }
+        // Resolve and initialize all projects
+        for (const [name, config] of Object.entries(projectConfigs)) {
+            const roots = resolveRoots(config);
+            if (roots.length === 0) {
+                logger.warn(`Project "${name}" has no valid roots, skipping`);
+                continue;
+            }
+            // Validate all roots exist and are directories
+            for (const root of roots) {
+                if (!existsSync(root) || !statSync(root).isDirectory()) {
+                    logger.warn(`Project "${name}": root is not a valid directory: ${root}`);
+                }
+            }
+            const project = initProject(name, roots.filter(r => existsSync(r) && statSync(r).isDirectory()));
+            this.projects.set(name, project);
+            logger.info(`Project "${name}": ${project.roots.length} root(s) — ${project.roots.join(", ")}`);
+        }
+        // Auto-select active project
+        if (this.projects.size === 1) {
+            this._activeProject = this.projects.keys().next().value;
+        }
+        else if (this.projects.size > 1) {
+            // Match cwd against project roots
+            const cwdResolved = path.resolve(cwd);
+            let bestMatch = null;
+            let bestLen = 0;
+            for (const [name, project] of this.projects) {
+                for (const root of project.roots) {
+                    if (cwdResolved.startsWith(root) && root.length > bestLen) {
+                        bestMatch = name;
+                        bestLen = root.length;
+                    }
+                }
+            }
+            this._activeProject = bestMatch || this.projects.keys().next().value;
+        }
+        if (this._activeProject) {
+            logger.info(`Active project: "${this._activeProject}"`);
+        }
+    }
+    /**
+     * Index and start watching all projects
+     */
+    async startAll() {
+        for (const [name, project] of this.projects) {
+            logger.info(`Indexing project "${name}"...`);
+            await project.watcher.initialIndex();
+            project.watcher.startWatching();
+            // Start LSP in background
+            project.lspManager.start().then(() => {
+                const servers = project.lspManager.getActiveServers();
+                if (servers.length > 0) {
+                    logger.info(`Project "${name}" LSP: ${servers.join(", ")}`);
+                }
+            }).catch((err) => {
+                logger.warn(`Project "${name}" LSP startup failed (non-fatal)`, err);
+            });
+        }
+    }
+    /**
+     * Get the active project
+     */
+    get active() {
+        if (!this._activeProject)
+            return null;
+        return this.projects.get(this._activeProject) || null;
+    }
+    get activeProjectName() {
+        return this._activeProject;
+    }
+    /**
+     * Switch active project
+     */
+    switchProject(name) {
+        if (this.projects.has(name)) {
+            this._activeProject = name;
+            logger.info(`Switched to project "${name}"`);
+            return true;
+        }
+        return false;
+    }
+    /**
+     * List all projects with stats
+     */
+    listProjects() {
+        const result = [];
+        for (const [name, project] of this.projects) {
+            result.push({
+                name,
+                active: name === this._activeProject,
+                roots: project.roots,
+                stats: project.graph.getStats(),
+            });
+        }
+        return result;
+    }
+    /**
+     * Add a project at runtime and persist to user config
+     */
+    async addProject(name, config) {
+        if (this.projects.has(name)) {
+            return `Project "${name}" already exists. Use switch_project to activate it.`;
+        }
+        const roots = resolveRoots(config);
+        if (roots.length === 0) {
+            return `No valid roots found for project "${name}".`;
+        }
+        const project = initProject(name, roots);
+        this.projects.set(name, project);
+        // Index it
+        await project.watcher.initialIndex();
+        project.watcher.startWatching();
+        project.lspManager.start().catch(() => { });
+        // Persist to user config
+        const userConfigPath = path.join(CODEGRAPH_DIR, "config.json");
+        let userConfig = { projects: {} };
+        if (existsSync(userConfigPath)) {
+            try {
+                userConfig = JSON.parse(readFileSync(userConfigPath, "utf-8"));
+            }
+            catch { /* start fresh */ }
+        }
+        userConfig.projects[name] = config;
+        mkdirSync(CODEGRAPH_DIR, { recursive: true });
+        writeFileSync(userConfigPath, JSON.stringify(userConfig, null, 2) + "\n");
+        // Auto-switch to new project
+        this._activeProject = name;
+        const stats = project.graph.getStats();
+        return `Project "${name}" added and activated. ${stats.files} files, ${stats.symbols} symbols indexed.`;
+    }
+    /**
+     * Get all root paths for the active project (for descriptions, etc.)
+     */
+    getActiveRoots() {
+        return this.active?.roots || [];
+    }
+    /**
+     * Get the primary root (first root) of the active project
+     */
+    getPrimaryRoot() {
+        const roots = this.getActiveRoots();
+        return roots.length > 0 ? roots[0] : null;
+    }
+    /**
+     * Shut down all projects
+     */
+    async shutdown() {
+        for (const [name, project] of this.projects) {
+            logger.info(`Shutting down project "${name}"...`);
+            await project.watcher.stop();
+            await project.lspManager.stop();
+            project.db.close();
+        }
+    }
+}
+//# sourceMappingURL=project-manager.js.map

package/dist/project-manager.js.map

@@ -0,0 +1 @@
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package/dist/tools/find-symbol.js

@@ -38,7 +38,8 @@ export function handleFindSymbol(graph, args) {
     const formatted = results.map((s) => {
         const exported = s.isExported ? " [exported]" : "";
         const sig = s.signature ? `\n  Signature: ${s.signature}` : "";
-        return `${s.kind} ${s.name}${exported}\n  Location: ${s.filePath}:${s.lineStart}-${s.lineEnd}${sig}`;
+        const doc = s.docstring ? `\n  Docstring: ${s.docstring}` : "";
+        return `${s.kind} ${s.name}${exported}\n  Location: ${s.filePath}:${s.lineStart}-${s.lineEnd}${sig}${doc}`;
     });
     return {
         content: [

package/dist/tools/find-symbol.js.map

@@ -1 +1 @@
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package/dist/tools/project-tools.d.ts

@@ -0,0 +1,38 @@
+import { ProjectManager } from "../project-manager.js";
+export declare const listProjectsTool: {
+    name: string;
+    description: string;
+};
+export declare function handleListProjects(pm: ProjectManager): {
+    content: {
+        type: "text";
+        text: string;
+    }[];
+};
+export declare const switchProjectTool: {
+    name: string;
+    description: string;
+};
+export declare function handleSwitchProject(pm: ProjectManager, args: {
+    project_name: string;
+}): {
+    content: {
+        type: "text";
+        text: string;
+    }[];
+};
+export declare const addProjectTool: {
+    name: string;
+    description: string;
+};
+export declare function handleAddProject(pm: ProjectManager, args: {
+    project_name: string;
+    roots?: string;
+    root?: string;
+    include?: string;
+}): Promise<{
+    content: {
+        type: "text";
+        text: string;
+    }[];
+}>;

package/dist/tools/project-tools.js

@@ -0,0 +1,72 @@
+export const listProjectsTool = {
+    name: "list_projects",
+    description: "List all configured projects, their roots, and index stats. Shows which project is currently active.",
+};
+export function handleListProjects(pm) {
+    const projects = pm.listProjects();
+    if (projects.length === 0) {
+        return {
+            content: [{ type: "text", text: "No projects configured." }],
+        };
+    }
+    const lines = [];
+    for (const p of projects) {
+        const marker = p.active ? " (active)" : "";
+        lines.push(`## ${p.name}${marker}`);
+        lines.push(`Roots: ${p.roots.join(", ")}`);
+        lines.push(`Files: ${p.stats.files}, Symbols: ${p.stats.symbols}, References: ${p.stats.references}, Imports: ${p.stats.imports}`);
+        lines.push("");
+    }
+    return {
+        content: [{ type: "text", text: lines.join("\n") }],
+    };
+}
+export const switchProjectTool = {
+    name: "switch_project",
+    description: "Switch the active project context. All subsequent tool calls will operate against the selected project's code graph.",
+};
+export function handleSwitchProject(pm, args) {
+    const success = pm.switchProject(args.project_name);
+    if (success) {
+        const active = pm.active;
+        const stats = active.graph.getStats();
+        return {
+            content: [{
+                    type: "text",
+                    text: `Switched to project "${args.project_name}".\nRoots: ${active.roots.join(", ")}\nFiles: ${stats.files}, Symbols: ${stats.symbols}, References: ${stats.references}`,
+                }],
+        };
+    }
+    const available = pm.listProjects().map(p => p.name).join(", ");
+    return {
+        content: [{
+                type: "text",
+                text: `Project "${args.project_name}" not found. Available projects: ${available}`,
+            }],
+    };
+}
+export const addProjectTool = {
+    name: "add_project",
+    description: "Add a new project at runtime. Provide a name and one or more root paths. The project is indexed immediately and persisted to ~/.codegraph/config.json.",
+};
+export async function handleAddProject(pm, args) {
+    const roots = args.roots ? args.roots.split(",").map(r => r.trim()).filter(Boolean) : undefined;
+    const include = args.include ? args.include.split(",").map(r => r.trim()).filter(Boolean) : undefined;
+    const config = {};
+    if (args.root)
+        config.root = args.root;
+    if (roots && roots.length > 0)
+        config.roots = roots;
+    if (include && include.length > 0)
+        config.include = include;
+    if (!config.root && (!config.roots || config.roots.length === 0)) {
+        return {
+            content: [{ type: "text", text: "Please provide at least one root path (via 'root' or 'roots' parameter)." }],
+        };
+    }
+    const result = await pm.addProject(args.project_name, config);
+    return {
+        content: [{ type: "text", text: result }],
+    };
+}
+//# sourceMappingURL=project-tools.js.map

package/dist/tools/project-tools.js.map

@@ -0,0 +1 @@
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