mcp-code-context 3.9.0 → 3.9.2

package/dist/src/utils/fileWatcher.js

@@ -1,5 +1,5 @@
 /**
- * File Watcher - v3.9.0
+ * File Watcher - v3.9.2
  * Auto-invalidate cache on file changes with chokidar
  */
 import chokidar from 'chokidar';

package/dist/src/utils/fuzzySearch.d.ts

@@ -1,5 +1,5 @@
 /**
- * Fuzzy Search - v3.9.0
+ * Fuzzy Search - v3.9.2
  * Typo-tolerant search with fuse.js
  */
 export interface FuzzySearchOptions {

package/dist/src/utils/fuzzySearch.js

@@ -1,5 +1,5 @@
 /**
- * Fuzzy Search - v3.9.0
+ * Fuzzy Search - v3.9.2
  * Typo-tolerant search with fuse.js
  */
 import Fuse from 'fuse.js';

package/dist/src/utils/gemfileParser.d.ts

@@ -1,5 +1,5 @@
 /**
- * Gemfile Parser - v3.9.0
+ * Gemfile Parser - v3.9.2
  * Parses Ruby Gemfile to extract gem dependencies and infer implicit behavior.
  * Uses a JSON data file for gem descriptions so they can be updated without recompile.
  */

package/dist/src/utils/gemfileParser.js

@@ -1,5 +1,5 @@
 /**
- * Gemfile Parser - v3.9.0
+ * Gemfile Parser - v3.9.2
  * Parses Ruby Gemfile to extract gem dependencies and infer implicit behavior.
  * Uses a JSON data file for gem descriptions so they can be updated without recompile.
  */

package/dist/src/utils/logger.d.ts

@@ -1,5 +1,5 @@
 /**
- * Logger - v3.9.0
+ * Logger - v3.9.2
  * Structured logging with pino (JSON to stderr, MCP-safe)
  */
 import pino from 'pino';

package/dist/src/utils/logger.js

@@ -1,5 +1,5 @@
 /**
- * Logger - v3.9.0
+ * Logger - v3.9.2
  * Structured logging with pino (JSON to stderr, MCP-safe)
  */
 import pino from 'pino';

package/dist/src/utils/metaprogramming.d.ts

@@ -1,5 +1,5 @@
 /**
- * Metaprogramming Entry Point Scanner - v3.9.0
+ * Metaprogramming Entry Point Scanner - v3.9.2
  * Identifies where Ruby's "magic" methods are generated in a codebase.
  * Does not resolve what methods are created — it surfaces WHERE to look.
  */

package/dist/src/utils/metaprogramming.js

@@ -1,5 +1,5 @@
 /**
- * Metaprogramming Entry Point Scanner - v3.9.0
+ * Metaprogramming Entry Point Scanner - v3.9.2
  * Identifies where Ruby's "magic" methods are generated in a codebase.
  * Does not resolve what methods are created — it surfaces WHERE to look.
  */

package/dist/src/utils/projectRoot.d.ts

@@ -0,0 +1,9 @@
+/**
+ * Searches upward from startPath to find the nearest project root directory marked by common indicators.
+ */
+export declare function findProjectRoot(startPath: string): string;
+/**
+ * Resolves the effective projectRoot from tool arguments, candidate paths, or process.cwd().
+ * Eliminates the bug where undefined projectRoot was stringified as literal "undefined".
+ */
+export declare function resolveProjectRoot(args?: Record<string, unknown>, fallbackPath?: string): string;

package/dist/src/utils/projectRoot.js

@@ -0,0 +1,94 @@
+import * as path from "node:path";
+import * as fs from "node:fs";
+const ROOT_MARKERS = [
+    ".git",
+    "package.json",
+    "composer.json",
+    "pyproject.toml",
+    "requirements.txt",
+    "Cargo.toml",
+    "go.mod",
+    "Gemfile",
+    "pom.xml",
+    "build.gradle",
+];
+/**
+ * Searches upward from startPath to find the nearest project root directory marked by common indicators.
+ */
+export function findProjectRoot(startPath) {
+    try {
+        let current = path.resolve(startPath);
+        if (fs.existsSync(current)) {
+            const stat = fs.statSync(current);
+            if (stat.isFile()) {
+                current = path.dirname(current);
+            }
+        }
+        else {
+            // If path does not exist yet, start from dirname
+            current = path.dirname(current);
+        }
+        while (true) {
+            for (const marker of ROOT_MARKERS) {
+                if (fs.existsSync(path.join(current, marker))) {
+                    return current;
+                }
+            }
+            const parent = path.dirname(current);
+            if (parent === current) {
+                break;
+            }
+            current = parent;
+        }
+    }
+    catch {
+        // Fallback if filesystem access fails
+    }
+    return path.resolve(startPath);
+}
+/**
+ * Resolves the effective projectRoot from tool arguments, candidate paths, or process.cwd().
+ * Eliminates the bug where undefined projectRoot was stringified as literal "undefined".
+ */
+export function resolveProjectRoot(args, fallbackPath) {
+    if (args) {
+        if (typeof args.projectRoot === "string" &&
+            args.projectRoot.trim().length > 0 &&
+            args.projectRoot !== "undefined" &&
+            args.projectRoot !== "null") {
+            return path.resolve(args.projectRoot.trim());
+        }
+        if (typeof args.rootDir === "string" &&
+            args.rootDir.trim().length > 0 &&
+            args.rootDir !== "undefined" &&
+            args.rootDir !== "null") {
+            return findProjectRoot(args.rootDir.trim());
+        }
+        if (typeof args.directoryPath === "string" &&
+            args.directoryPath.trim().length > 0 &&
+            args.directoryPath !== "undefined" &&
+            args.directoryPath !== "null") {
+            return findProjectRoot(args.directoryPath.trim());
+        }
+        if (typeof args.filePath === "string" &&
+            args.filePath.trim().length > 0 &&
+            args.filePath !== "undefined" &&
+            args.filePath !== "null") {
+            return findProjectRoot(args.filePath.trim());
+        }
+        if (Array.isArray(args.reads) && args.reads.length > 0) {
+            const first = args.reads[0];
+            if (first && typeof first === "object" && typeof first.filePath === "string") {
+                return findProjectRoot(first.filePath);
+            }
+        }
+    }
+    if (typeof fallbackPath === "string" &&
+        fallbackPath.trim().length > 0 &&
+        fallbackPath !== "undefined" &&
+        fallbackPath !== "null") {
+        return findProjectRoot(fallbackPath.trim());
+    }
+    return process.cwd();
+}
+//# sourceMappingURL=projectRoot.js.map

package/dist/src/utils/projectRoot.js.map

@@ -0,0 +1 @@
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package/dist/src/utils/railsRoutes.d.ts

@@ -1,8 +1,9 @@
 /**
- * Rails Routes Parser - v3.9.0
+ * Rails Routes Parser - v3.9.2
  * Parses config/routes.rb to map HTTP routes to controller actions.
- * v1: handles resources, resource, explicit get/post/patch/put/delete/root.
- * v1 limitation: only:/except:/shallow:/nested resources — emits warnings, does not generate false routes.
+ * Uses indentation-based namespace tracking (immune to do/end counting errors).
+ * Supports: resources, resource, explicit HTTP verbs, namespace/scope, root.
+ * v1 limitations: only:/except:/shallow:/nested resources — emits warnings, no false routes.
  */
 export interface RouteEntry {
     method: string;

package/dist/src/utils/railsRoutes.js

@@ -1,8 +1,9 @@
 /**
- * Rails Routes Parser - v3.9.0
+ * Rails Routes Parser - v3.9.2
  * Parses config/routes.rb to map HTTP routes to controller actions.
- * v1: handles resources, resource, explicit get/post/patch/put/delete/root.
- * v1 limitation: only:/except:/shallow:/nested resources — emits warnings, does not generate false routes.
+ * Uses indentation-based namespace tracking (immune to do/end counting errors).
+ * Supports: resources, resource, explicit HTTP verbs, namespace/scope, root.
+ * v1 limitations: only:/except:/shallow:/nested resources — emits warnings, no false routes.
  */
 import * as fs from "node:fs/promises";
 import * as path from "node:path";
@@ -10,22 +11,22 @@ import * as path from "node:path";
 const routesCache = new Map();
 /** Standard 7 REST actions for `resources` */
 const RESOURCES_ACTIONS = [
-    { method: "GET", path: "", action: "index", controller: "" },
-    { method: "GET", path: "/new", action: "new", controller: "" },
-    { method: "POST", path: "", action: "create", controller: "" },
-    { method: "GET", path: "/:id", action: "show", controller: "" },
-    { method: "GET", path: "/:id/edit", action: "edit", controller: "" },
-    { method: "PATCH", path: "/:id", action: "update", controller: "" },
-    { method: "DELETE", path: "/:id", action: "destroy", controller: "" },
+    { method: "GET", path: "", action: "index" },
+    { method: "GET", path: "/new", action: "new" },
+    { method: "POST", path: "", action: "create" },
+    { method: "GET", path: "/:id", action: "show" },
+    { method: "GET", path: "/:id/edit", action: "edit" },
+    { method: "PATCH", path: "/:id", action: "update" },
+    { method: "DELETE", path: "/:id", action: "destroy" },
 ];
 /** Standard 6 singular REST actions for `resource` */
 const RESOURCE_ACTIONS = [
-    { method: "GET", path: "/new", action: "new", controller: "" },
-    { method: "POST", path: "", action: "create", controller: "" },
-    { method: "GET", path: "", action: "show", controller: "" },
-    { method: "GET", path: "/edit", action: "edit", controller: "" },
-    { method: "PATCH", path: "", action: "update", controller: "" },
-    { method: "DELETE", path: "", action: "destroy", controller: "" },
+    { method: "GET", path: "/new", action: "new" },
+    { method: "POST", path: "", action: "create" },
+    { method: "GET", path: "", action: "show" },
+    { method: "GET", path: "/edit", action: "edit" },
+    { method: "PATCH", path: "", action: "update" },
+    { method: "DELETE", path: "", action: "destroy" },
 ];
 export async function parseRailsRoutes(projectRoot) {
     const routesPath = path.join(projectRoot, "config", "routes.rb");
@@ -47,52 +48,57 @@ export async function parseRailsRoutes(projectRoot) {
 export function parseRoutesContent(content) {
     const routes = [];
     const warnings = [];
-    // Stack for namespace/scope prefix accumulation
-    const prefixStack = [];
+    const nsStack = [];
+    // Helper: get current url prefix and controller namespace from stack
+    const getPrefix = () => nsStack.length > 0 ? "/" + nsStack.map(e => e.prefix).join("/") : "";
+    const getNsPrefix = () => nsStack.length > 0 ? nsStack.map(e => e.nsPrefix).join("/") + "/" : "";
+    // Helper: measure leading spaces
+    const indentOf = (raw) => raw.match(/^(\s*)/)?.[1].length ?? 0;
     const lines = content.split("\n");
     for (const rawLine of lines) {
+        const indent = indentOf(rawLine);
         const line = rawLine.trim();
-        // Skip comments and blank lines
-        if (line.startsWith("#") || line === "")
-            continue;
-        // Namespace/scope push
-        const nsMatch = line.match(/^(?:namespace|scope)\s+[:'"]([^'"]+)['"]/);
-        if (nsMatch) {
-            prefixStack.push(nsMatch[1].replace(/^:/, ""));
+        // Skip blank lines and comments
+        if (line === "" || line.startsWith("#"))
             continue;
+        // Pop namespace stack entries whose indent is >= current indent
+        // (meaning we've dedented past them — their `end` was processed)
+        while (nsStack.length > 0 && indent <= nsStack[nsStack.length - 1].indent) {
+            nsStack.pop();
         }
-        // Closing end — pop prefix stack
-        if (line === "end" && prefixStack.length > 0) {
-            prefixStack.pop();
+        // namespace :admin do  /  namespace 'admin' do  /  scope :admin do
+        // Handles both symbol (:admin) and string ('admin'/"admin") syntax
+        const nsSymbolMatch = line.match(/^(?:namespace|scope)\s+:(\w+)/);
+        const nsStringMatch = line.match(/^(?:namespace|scope)\s+['"]([^'"]+)['"]/);
+        const nsMatch = nsSymbolMatch ?? nsStringMatch;
+        if (nsMatch) {
+            const seg = nsMatch[1];
+            // scope doesn't add controller namespace, namespace does
+            const isNamespace = line.startsWith("namespace");
+            nsStack.push({ indent, prefix: seg, nsPrefix: isNamespace ? seg : "" });
             continue;
         }
-        const prefix = prefixStack.length > 0 ? "/" + prefixStack.join("/") : "";
-        // Detect unsupported options — warn instead of generating wrong output
+        const urlPrefix = getPrefix();
+        const ctrlPrefix = getNsPrefix();
+        // Detect option flags
         const hasOnlyExcept = /\bonly:\s*\[/.test(line) || /\bexcept:\s*\[/.test(line);
         const hasShallow = /\bshallow:\s*true\b/.test(line);
-        const hasNested = line.includes("do") && (line.startsWith("resources") || line.startsWith("resource"));
-        // resources :name
+        // Nested resources: line ends with `do` (opens a block we won't parse deeply)
+        const hasNestedDo = /\bdo\s*$/.test(line) && (line.startsWith("resources") || line.startsWith("resource"));
+        // resources :name  /  resources :name, only: [...]  /  resources :name do
         const resourcesMatch = line.match(/^resources\s+:(\w+)/);
         if (resourcesMatch) {
             const name = resourcesMatch[1];
-            const controller = nameToController(name, prefixStack);
-            const basePath = `${prefix}/${name}`;
-            if (hasOnlyExcept) {
+            const controller = `${ctrlPrefix}${name}`;
+            const basePath = `${urlPrefix}/${name}`;
+            if (hasOnlyExcept)
                 warnings.push(`resources :${name} uses only:/except: — route list may be incomplete. Full support planned for v2.`);
-            }
-            if (hasShallow) {
+            if (hasShallow)
                 warnings.push(`resources :${name} uses shallow: — nested shallow routes not fully parsed.`);
-            }
-            if (hasNested) {
+            if (hasNestedDo)
                 warnings.push(`resources :${name} has nested resources (do block) — only top-level routes parsed.`);
-            }
-            for (const action of RESOURCES_ACTIONS) {
-                routes.push({
-                    method: action.method,
-                    path: basePath + action.path,
-                    controller,
-                    action: action.action,
-                });
+            for (const a of RESOURCES_ACTIONS) {
+                routes.push({ method: a.method, path: basePath + a.path, controller, action: a.action });
             }
             continue;
         }
@@ -100,38 +106,32 @@ export function parseRoutesContent(content) {
         const resourceMatch = line.match(/^resource\s+:(\w+)/);
         if (resourceMatch) {
             const name = resourceMatch[1];
-            const controller = nameToController(name + "s", prefixStack); // pluralize for controller
-            const basePath = `${prefix}/${name}`;
-            if (hasOnlyExcept) {
+            const controller = `${ctrlPrefix}${name}s`; // pluralize for controller
+            const basePath = `${urlPrefix}/${name}`;
+            if (hasOnlyExcept)
                 warnings.push(`resource :${name} uses only:/except: — route list may be incomplete.`);
-            }
-            for (const action of RESOURCE_ACTIONS) {
-                routes.push({
-                    method: action.method,
-                    path: basePath + action.path,
-                    controller,
-                    action: action.action,
-                });
+            for (const a of RESOURCE_ACTIONS) {
+                routes.push({ method: a.method, path: basePath + a.path, controller, action: a.action });
             }
             continue;
         }
-        // Explicit HTTP verb routes: get '/path', to: 'controller#action'
+        // Explicit HTTP verb: get '/path', to: 'controller#action'
         const verbMatch = line.match(/^(get|post|patch|put|delete|head|options)\s+['"]([^'"]+)['"]\s*,\s*to:\s*['"]([^#'"]+)#([^'"]+)['"]/i);
         if (verbMatch) {
             routes.push({
                 method: verbMatch[1].toUpperCase(),
-                path: prefix + verbMatch[2],
+                path: urlPrefix + verbMatch[2],
                 controller: verbMatch[3].trim(),
                 action: verbMatch[4].trim(),
             });
             continue;
         }
-        // root to: 'controller#action'
+        // root to: 'controller#action'  /  root 'controller#action'
         const rootMatch = line.match(/^root\s+(?:to:\s*)?['"]([^#'"]+)#([^'"]+)['"]/);
         if (rootMatch) {
             routes.push({
                 method: "GET",
-                path: prefix + "/",
+                path: urlPrefix + "/",
                 controller: rootMatch[1].trim(),
                 action: rootMatch[2].trim(),
             });
@@ -140,9 +140,4 @@ export function parseRoutesContent(content) {
     }
     return { routes, warnings };
 }
-/** Convert resource name + namespace stack to controller name */
-function nameToController(name, prefixStack) {
-    const ns = prefixStack.length > 0 ? prefixStack.join("/") + "/" : "";
-    return `${ns}${name}`;
-}
 //# sourceMappingURL=railsRoutes.js.map

package/dist/src/utils/railsRoutes.js.map

@@ -1 +1 @@
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package/dist/src/utils/rateLimiter.d.ts

@@ -1,5 +1,5 @@
 /**
- * Rate Limiter - v3.9.0
+ * Rate Limiter - v3.9.2
  * Token bucket algorithm for DoS protection
  */
 interface RateLimitConfig {

package/dist/src/utils/rateLimiter.js

@@ -1,5 +1,5 @@
 /**
- * Rate Limiter - v3.9.0
+ * Rate Limiter - v3.9.2
  * Token bucket algorithm for DoS protection
  */
 export class RateLimiter {

package/dist/src/utils/streaming.d.ts

@@ -1,5 +1,5 @@
 /**
- * File Streaming - v3.9.0
+ * File Streaming - v3.9.2
  * Stream large files in chunks to avoid memory exhaustion
  */
 import type { BaseParser, SymbolInfo } from "../parsers/base.js";

package/dist/src/utils/streaming.js

@@ -1,5 +1,5 @@
 /**
- * File Streaming - v3.9.0
+ * File Streaming - v3.9.2
  * Stream large files in chunks to avoid memory exhaustion
  */
 import * as fs from "node:fs";

package/dist/src/utils/telemetry.d.ts

@@ -1,5 +1,5 @@
 /**
- * Telemetry - v3.9.0
+ * Telemetry - v3.9.2
  * Metrics collection and monitoring
  */
 export interface Metric {

package/dist/src/utils/telemetry.js

@@ -1,5 +1,5 @@
 /**
- * Telemetry - v3.9.0
+ * Telemetry - v3.9.2
  * Metrics collection and monitoring
  */
 export class TelemetryCollector {

package/llms.txt

@@ -1,21 +1,39 @@
-# mcp-code-context v3.9.0
+# mcp-code-context v3.9.2
 
 > A Model Context Protocol (MCP) server with **Tree-sitter WASM parsers** for 100% AST accuracy. Zero native dependencies. Production-ready with middleware pipeline, session-scoped state, and crash recovery.
 
-## What's New in v3.9.0
+## What's New in v3.9.2
+
+🛡️ **Project Root Fallback & Schema Freedom Release**:
+- ✅ **Smart Project Root Discovery**: `resolveProjectRoot` & `findProjectRoot` walk up directory trees detecting `.git`, `package.json`, `composer.json`, `pyproject.toml`, etc. Eliminates false-positive `outside project boundary ".../undefined"` security errors.
+- ✅ **Optional Schema Requirements**: `projectRoot` is now optional across all tools in `CORE_TOOLS` and `ADMIN_TOOLS`. LLM agents can perform surgical operations with just `filePath` or `rootDir`.
+- ✅ **SecurityValidator Guard**: `SecurityValidator` safely defaults `undefined`/`null` roots to `process.cwd()`.
+- ✅ **Startup Diagnostics Signature**: Emits `[mcp-code-context] v3.9.2 running on stdio` on startup.
+
+## Previously Added in v3.9.1
+
+🐛 **Bug Fix Release**:
+- ✅ **`get_rails_routes` namespace fix**: Routes inside `namespace :admin do` now produce `/admin/users` (was `/users`). Controllers correctly namespaced as `admin/users`. Fixed regex that captured `admin do` instead of `admin` with symbol syntax.
+- ✅ **`get_rails_routes` indentation parser**: Replaced fragile `do/end` depth counter with indentation-based stack. Handles nested namespaces (`api/v1`), `member do` blocks, and `scope` correctly.
+- ✅ **Repo map Gems + Concerns**: `get_semantic_repo_map` appends `<gem>` behavior blocks and `<concern>` entries when Gemfile and concerns directories are present.
+
+## Previously Added in v3.9.0
+
+- ✅ **`get_gemfile_context`**: Parse Gemfile, return implicit behaviors for known gems (devise, sidekiq, pundit, kaminari, paper_trail, geocoder, etc.)
+- ✅ **`find_metaprogramming`**: Scan Ruby for `define_method`, `method_missing`, `class_eval`, `ActiveSupport::Concern`, `delegate`, `has_many :through` etc.
+- ✅ **`get_rails_routes`**: Parse `config/routes.rb` into structured route map
+- ✅ **Concern resolution in `analyze_impact`**: Checks `app/models/concerns` and `app/controllers/concerns` before file scan
+
+## Previously Added in v3.8.x
 
-🚀 **CRITICAL FIXES - Production Readiness Release**:
 - ✅ **Session-scoped state**: Each MCP client gets isolated locks, confirmation store, rate limiter (no state leakage)
 - ✅ **Crash recovery**: SQLite-backed pending operations store - survive restarts
 - ✅ **Expanded ReDoS protection**: 15+ patterns (was 6) - better security
 - ✅ **Auto-persist before eviction**: CacheManager now persists before LRU eviction
 - ✅ **Higher file limits**: MAX_FILES_REPO_MAP = 2000 (was 500)
-- ✅ **Multi-client tests**: New integration tests for concurrent MCP clients
 - ✅ **Ruby full support**: Complete `RubyParser` with `search()` for `search_code_pattern` compatibility
 - ✅ **ActiveRecord Virtual Schema**: Parses `db/schema.rb` and injects column annotations on AR model reads
 
-## Previously Added in v3.7.x
-
 - ✅ 4 new tools: `search_symbols`, `explain_symbol`, `batch_read`, `get_rate_limit_status`
 - ✅ `diffFormat` parameter on all write tools (`unified`, `compact`, `summary`, `none`)
 - ✅ Phase 2 no longer requires `newContent`/`code` — server stores content from Phase 1
@@ -149,13 +167,13 @@ This MCP server solves two problems:
 - `steps` (optional): Number of versions to go back (1-5, default: 1).
 **What it does:** Reverts the file to the state it was in before the last 1-5 modifications.
 
-### Write Tools (v3.9.0 Two-Phase Workflow)
+### Write Tools (Two-Phase Workflow)
 
 All write tools follow a **Two-Phase Workflow**:
 1. **Phase 1 (Preview)**: Call without a token to get a unified `diff` and a `confirmationToken`.
 2. **Phase 2 (Apply)**: Call with `confirmationToken` and `confirm: true` to apply the changes.
 
-**Important Notes (v3.9.0):**
+**Important Safety Features:**
 - ✅ **Windows CRLF Support**: Fully resolved. All operations work correctly on Windows files with CRLF line endings.
 - ✅ **Parameter Brace Handling**: Methods with braces in parameters (e.g., `{int? cart}`) are now handled correctly.
 - ✅ **Session-scoped state**: Each MCP client gets isolated state (locks, confirmation store, rate limiter).
@@ -236,9 +254,36 @@ All write tools follow a **Two-Phase Workflow**:
 
 **Best used when:** Cleaning up deprecated functions or unused code.
 
-## New Tools (v3.9.0)
+## New Tools (v3.9.x)
+
+#### 11. `get_gemfile_context`
+**Purpose:** Parse the Gemfile and return known gem behaviors with their implicit Rails conventions.
+
+**Input:** `projectRoot` (required).
+
+**Returns:** List of all gems, known gems with their implicit behavior descriptions, and an XML annotation block.
+
+**Best used when:** Starting work on a Rails project to understand what auth/authorization/pagination/etc. gems are active without reading docs.
 
-#### 11. `get_session_stats`
+#### 12. `find_metaprogramming`
+**Purpose:** Scan Ruby files for dynamic method generation entry points.
+
+**Input:** `projectRoot` (required), `filePath` (optional — scan single file), `rootDir` (optional — scan subdirectory).
+
+**Returns:** All matches grouped by file, with line number, pattern name, description, and code snippet.
+
+**Best used when:** Investigating where "magic methods" are defined in a Rails project (before using `analyze_impact`).
+
+#### 13. `get_rails_routes`
+**Purpose:** Parse `config/routes.rb` and return a structured route map.
+
+**Input:** `projectRoot` (required).
+
+**Returns:** Array of routes with `method`, `path`, `controller`, `action`. Includes warnings for `only:/except:` and nested resources.
+
+**Best used when:** Understanding API surface of a Rails app, finding what controller handles a given route.
+
+#### 14. `get_session_stats`
 **Purpose:** Get statistics for the current MCP client session.
 
 **Input:** None.
@@ -248,27 +293,21 @@ All write tools follow a **Two-Phase Workflow**:
 - `locksHeld`: Number of file locks currently held
 - `rateLimiterTokens`: Current token balance for this session
 
-**Best used when:** Diagnosing session-specific issues or understanding your client's resource usage.
-
-#### 12. `clear_session_cache`
+#### 15. `clear_session_cache`
 **Purpose:** Clear the cache for the current MCP client session only.
 
 **Input:** None.
 
 **Returns:** `cacheEntriesCleared` - Number of cache entries removed.
 
-**Best used when:** You want to reset your client's cache without affecting other MCP clients.
-
-#### 13. `list_pending_operations`
+#### 16. `list_pending_operations`
 **Purpose:** List all pending operations (for recovery after crash).
 
 **Input:** None.
 
 **Returns:** Array of pending operations with tokens, file paths, and timestamps.
 
-**Best used when:** Recovering work after a server crash.
-
-## Previously Added Tools (v3.9.0)
+## Previously Added Tools (v3.9.x)
 
 #### 14. `parse_file`
 **Purpose:** Parse a file using Tree-sitter and extract all symbols.
@@ -313,7 +352,7 @@ All write tools follow a **Two-Phase Workflow**:
 5. **Phase 2: Apply Edit** → Verify the diff, then call with the token and `confirm: true`.
 6. **Recovery** → Use `rollback_file` if needed.
 
-## Session State Configuration (v3.9.0+)
+## Session State Configuration (v3.8.0+)
 
 ### Critical: Session-Scoped State
 
@@ -429,6 +468,6 @@ No additional configuration is needed beyond adding the MCP server definition. S
 
 ---
 
-**Version**: 3.9.0  
+**Version**: 3.9.2  
 **Last Updated**: June 8, 2026  
 **Status**: Production-ready with session-scoped state and crash recovery