mcp-code-context 3.6.3 → 3.7.0

package/dist/src/core/cacheManager.js

@@ -1,20 +1,19 @@
-/**
- * Cache Manager - v3.6.3
- * WASM SQLite cache with debounced persistence
- */
+/** Cache Manager - WASM SQLite cache with debounced persistence */
 import initSqlJs from 'sql.js';
 import * as fs from 'node:fs/promises';
-import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';
+import { existsSync, mkdirSync, readFileSync, writeFileSync, copyFileSync, rmSync, renameSync } from 'fs';
 import * as path from 'path';
 import * as crypto from 'node:crypto';
 import { tmpdir } from 'os';
 import { logger } from '../utils/logger.js';
 import { FileWatcher } from '../utils/fileWatcher.js';
+import { getAppDir } from '../utils/appDir.js';
 export class CacheManager {
     db = null;
     dbPath;
     cacheDir;
     isDirty = false;
+    isPersisting = false;
     persistTimer = null;
     initPromise;
     watcher = null;
@@ -23,20 +22,32 @@ export class CacheManager {
     misses = 0;
     constructor(projectRoot) {
         this.projectRoot = projectRoot;
-        const projectHash = crypto.createHash('md5')
+        const projectHash = crypto.createHash('sha256')
             .update(projectRoot)
             .digest('hex')
             .substring(0, 8);
-        this.cacheDir = path.join(tmpdir(), 'mcp-cache', projectHash);
+        this.cacheDir = getAppDir(`cache/${projectHash}`);
         this.dbPath = path.join(this.cacheDir, 'cache.db');
+        // Silent migration: move existing os.tmpdir() cache to new location
+        const legacyDb = path.join(tmpdir(), 'mcp-cache', projectHash, 'cache.db');
+        if (existsSync(legacyDb) && !existsSync(this.dbPath)) {
+            try {
+                copyFileSync(legacyDb, this.dbPath);
+                rmSync(path.dirname(legacyDb), { recursive: true, force: true });
+            }
+            catch (err) {
+                // Migration is best-effort — never block normal operation
+                logger.debug({ err }, 'Legacy cache migration failed (non-blocking)');
+            }
+        }
         // Initialize on construction
         this.initPromise = this.init();
     }
     async init() {
         try {
-            // Ensure cache directory exists (OS cleanup recovery)
+            // Ensure cache directory exists (recovery if manually deleted)
             if (!existsSync(this.cacheDir)) {
-                logger.warn({ cacheDir: this.cacheDir }, 'Cache directory deleted by OS, recreating');
+                logger.warn({ cacheDir: this.cacheDir }, 'Cache directory missing, recreating');
                 mkdirSync(this.cacheDir, { recursive: true });
             }
             const SQL = await initSqlJs();
@@ -155,12 +166,12 @@ export class CacheManager {
             return { totalEntries: 0, totalSize: 0, hits: 0, misses: 0, hitRate: '0%', oldestEntry: null, newestEntry: null };
         }
         try {
-            const stmt = this.db.prepare(`
-        SELECT
-          COUNT(*) as count,
-          MIN(cached_at) as oldest,
-          MAX(cached_at) as newest
-        FROM file_cache
+            const stmt = this.db.prepare(`
+        SELECT
+          COUNT(*) as count,
+          MIN(cached_at) as oldest,
+          MAX(cached_at) as newest
+        FROM file_cache
       `);
             stmt.step();
             const row = stmt.getAsObject();
@@ -191,17 +202,23 @@ export class CacheManager {
         this.persistTimer = setTimeout(() => this.persist(), 5000);
     }
     async persist() {
-        if (!this.isDirty || !this.db)
+        if (!this.isDirty || !this.db || this.isPersisting)
             return;
+        this.isPersisting = true;
         try {
             const data = this.db.export();
             const buffer = Buffer.from(data);
-            await fs.writeFile(this.dbPath, buffer);
+            const tmpPath = `${this.dbPath}.tmp`;
+            await fs.writeFile(tmpPath, buffer);
+            await fs.rename(tmpPath, this.dbPath);
             this.isDirty = false;
-            logger.debug({ dbPath: this.dbPath, size: buffer.length }, 'Cache persisted');
+            logger.debug({ dbPath: this.dbPath, size: buffer.length }, "Cache persisted");
         }
         catch (error) {
-            logger.error({ error }, 'Failed to persist cache');
+            logger.error({ error }, "Failed to persist cache");
+        }
+        finally {
+            this.isPersisting = false;
         }
     }
     async close() {
@@ -224,38 +241,37 @@ export class CacheManager {
      * CRITICAL: Only call from global shutdown hooks
      */
     persistOnExit() {
-        if (!this.isDirty || !this.db)
+        if (!this.isDirty || !this.db || this.isPersisting)
             return;
+        this.isPersisting = true;
         try {
             const data = this.db.export();
             const buffer = Buffer.from(data);
-            writeFileSync(this.dbPath, buffer);
+            const tmpPath = `${this.dbPath}.tmp`;
+            writeFileSync(tmpPath, buffer);
+            renameSync(tmpPath, this.dbPath);
             this.isDirty = false;
         }
         catch (error) {
-            console.error('Failed to persist cache on exit:', error);
+            console.error("Failed to persist cache on exit:", error);
+        }
+        finally {
+            this.isPersisting = false;
         }
     }
     startWatcher(debounceMs = 500) {
-        if (this.watcher) {
-            logger.warn({ projectRoot: this.projectRoot }, 'Watcher already started');
+        if (this.watcher)
             return;
-        }
         this.watcher = new FileWatcher({
             debounceMs,
             ignored: [],
-            onFileChange: async (filePath) => {
-                await this.invalidate(filePath);
-                logger.debug({ filePath }, 'Cache invalidated by file watcher');
-            },
+            onFileChange: (filePath) => { void this.invalidate(filePath); },
         });
         this.watcher.start(this.projectRoot);
     }
     stopWatcher() {
-        if (this.watcher) {
-            this.watcher.stop();
-            this.watcher = null;
-        }
+        this.watcher?.stop();
+        this.watcher = null;
     }
     getWatcherStatus() {
         return this.watcher ? this.watcher.getStatus() : { isWatching: false, watchedFiles: 0 };

package/dist/src/core/cacheManager.js.map

@@ -1 +1 @@
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package/dist/src/core/engine.d.ts

@@ -1,5 +1,5 @@
 /**
- * Core Engine - v3.6.3
+ * Core Engine - v3.7.0
  * ASYNC I/O: Migrated to fs.promises
  */
 import { Parser, Language } from "web-tree-sitter";

package/dist/src/core/engine.js

@@ -1,5 +1,5 @@
 /**
- * Core Engine - v3.6.3
+ * Core Engine - v3.7.0
  * ASYNC I/O: Migrated to fs.promises
  */
 import { Parser, Language } from "web-tree-sitter";
@@ -47,7 +47,7 @@ export class CodeContextEngine {
             possiblePaths.unshift(path.join(path.dirname(pkgPath), "out", wasmFile));
         }
         catch {
-            // Ignore resolution errors, fallback to manual paths
+            // require.resolve probe failed — expected when running under npx or global install
         }
         let wasmPath = null;
         for (const p of possiblePaths) {
@@ -57,7 +57,7 @@ export class CodeContextEngine {
                 break;
             }
             catch {
-                continue;
+                continue; // WASM file not at this path — try next candidate
             }
         }
         if (!wasmPath) {

package/dist/src/core/engine.js.map

@@ -1 +1 @@
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package/dist/src/core/indexManager.d.ts

@@ -0,0 +1,58 @@
+/**
+ * Index Manager - v3.7.0
+ * Persistent symbol index and dependency graph in ~/.mcp-code-context/index/
+ * Enables O(1) search_symbols and analyze_impact queries.
+ */
+import type { SymbolInfo } from "../parsers/base.js";
+export interface IndexedSymbol {
+    filePath: string;
+    name: string;
+    type: string;
+    startLine: number;
+    endLine: number;
+    className?: string;
+}
+export interface IndexStats {
+    filesIndexed: number;
+    symbolsIndexed: number;
+    dependenciesIndexed: number;
+    dbSizeBytes: number;
+    lastIndexedAt: number | null;
+}
+export declare class IndexManager {
+    private db;
+    private dbPath;
+    private indexDir;
+    private isDirty;
+    private persistTimer;
+    private initPromise;
+    constructor(projectRoot: string);
+    private init;
+    private initSchema;
+    /**
+     * Check if a file needs re-indexing based on its hash.
+     */
+    isStale(filePath: string, currentHash: string): Promise<boolean>;
+    /**
+     * Index a single file: upsert symbols and dependencies atomically.
+     */
+    indexFile(filePath: string, fileHash: string, symbols: SymbolInfo[], dependencies: string[]): Promise<void>;
+    /**
+     * Remove a file from the index (called by file watcher on delete).
+     */
+    removeFile(filePath: string): Promise<void>;
+    searchSymbols(query: string, options?: {
+        fuzzy?: boolean;
+        types?: string[];
+        maxResults?: number;
+    }): Promise<IndexedSymbol[]>;
+    getDependents(filePath: string): Promise<string[]>;
+    getDependencies(filePath: string): Promise<string[]>;
+    hasIndex(): Promise<boolean>;
+    getStats(): Promise<IndexStats>;
+    clear(): Promise<void>;
+    private schedulePersist;
+    private persist;
+    persistOnExit(): void;
+    close(): Promise<void>;
+}

package/dist/src/core/indexManager.js

@@ -0,0 +1,252 @@
+/**
+ * Index Manager - v3.7.0
+ * Persistent symbol index and dependency graph in ~/.mcp-code-context/index/
+ * Enables O(1) search_symbols and analyze_impact queries.
+ */
+import initSqlJs from "sql.js";
+import * as fs from "node:fs/promises";
+import { existsSync, mkdirSync, readFileSync, writeFileSync, renameSync } from "fs";
+import * as path from "path";
+import * as crypto from "node:crypto";
+import { logger } from "../utils/logger.js";
+import { getAppDir } from "../utils/appDir.js";
+import { searchSymbolsInDb, getDependentsFromDb, getDependenciesFromDb, hasIndexInDb, getIndexStatsFromDb, } from "./indexManagerQueries.js";
+export class IndexManager {
+    db = null;
+    dbPath;
+    indexDir;
+    isDirty = false;
+    persistTimer = null;
+    initPromise;
+    constructor(projectRoot) {
+        const projectHash = crypto
+            .createHash("sha256")
+            .update(projectRoot)
+            .digest("hex")
+            .substring(0, 8);
+        this.indexDir = getAppDir(`index/${projectHash}`);
+        this.dbPath = path.join(this.indexDir, "index.db");
+        this.initPromise = this.init();
+    }
+    async init() {
+        try {
+            if (!existsSync(this.indexDir)) {
+                mkdirSync(this.indexDir, { recursive: true });
+            }
+            const SQL = await initSqlJs();
+            if (existsSync(this.dbPath)) {
+                const buffer = readFileSync(this.dbPath);
+                this.db = new SQL.Database(buffer);
+                logger.debug({ dbPath: this.dbPath }, "Loaded existing index database");
+            }
+            else {
+                this.db = new SQL.Database();
+                this.initSchema();
+                logger.info({ dbPath: this.dbPath }, "Created new index database");
+            }
+        }
+        catch (error) {
+            logger.error({ error }, "Failed to initialize index");
+            throw error;
+        }
+    }
+    initSchema() {
+        if (!this.db)
+            return;
+        this.db.run(`
+      CREATE TABLE IF NOT EXISTS files (
+        file_path   TEXT PRIMARY KEY,
+        file_hash   TEXT NOT NULL,
+        indexed_at  INTEGER NOT NULL
+      )
+    `);
+        this.db.run(`
+      CREATE TABLE IF NOT EXISTS symbols (
+        id          INTEGER PRIMARY KEY AUTOINCREMENT,
+        file_path   TEXT NOT NULL,
+        name        TEXT NOT NULL,
+        type        TEXT NOT NULL,
+        start_line  INTEGER NOT NULL DEFAULT 0,
+        end_line    INTEGER NOT NULL DEFAULT 0,
+        class_name  TEXT,
+        FOREIGN KEY (file_path) REFERENCES files(file_path) ON DELETE CASCADE
+      )
+    `);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_symbols_name      ON symbols(name)`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_symbols_file      ON symbols(file_path)`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_symbols_name_lower ON symbols(LOWER(name))`);
+        this.db.run(`
+      CREATE TABLE IF NOT EXISTS dependencies (
+        from_file   TEXT NOT NULL,
+        to_file     TEXT NOT NULL,
+        import_stmt TEXT,
+        PRIMARY KEY (from_file, to_file)
+      )
+    `);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_deps_from ON dependencies(from_file)`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_deps_to   ON dependencies(to_file)`);
+    }
+    // ── Public API ────────────────────────────────────────────────────────────
+    /**
+     * Check if a file needs re-indexing based on its hash.
+     */
+    async isStale(filePath, currentHash) {
+        await this.initPromise;
+        if (!this.db)
+            return true;
+        const stmt = this.db.prepare("SELECT file_hash FROM files WHERE file_path = ?");
+        stmt.bind([filePath]);
+        const exists = stmt.step();
+        const row = exists ? stmt.getAsObject() : null;
+        stmt.free();
+        return !row || row.file_hash !== currentHash;
+    }
+    /**
+     * Index a single file: upsert symbols and dependencies atomically.
+     */
+    async indexFile(filePath, fileHash, symbols, dependencies) {
+        await this.initPromise;
+        if (!this.db)
+            return;
+        try {
+            this.db.run("BEGIN");
+            // Upsert file record
+            this.db.run("INSERT OR REPLACE INTO files (file_path, file_hash, indexed_at) VALUES (?, ?, ?)", [filePath, fileHash, Date.now()]);
+            // Delete old symbols for this file
+            this.db.run("DELETE FROM symbols WHERE file_path = ?", [filePath]);
+            // Insert new symbols
+            const symStmt = this.db.prepare(`INSERT INTO symbols (file_path, name, type, start_line, end_line, class_name)
+         VALUES (?, ?, ?, ?, ?, ?)`);
+            for (const sym of symbols) {
+                symStmt.run([
+                    filePath,
+                    sym.name,
+                    sym.type,
+                    sym.startLine ?? 0,
+                    sym.endLine ?? 0,
+                    sym.className ?? null,
+                ]);
+            }
+            symStmt.free();
+            // Delete old dependencies from this file
+            this.db.run("DELETE FROM dependencies WHERE from_file = ?", [filePath]);
+            // Insert new dependencies
+            const depStmt = this.db.prepare("INSERT OR IGNORE INTO dependencies (from_file, to_file) VALUES (?, ?)");
+            for (const dep of dependencies) {
+                depStmt.run([filePath, dep]);
+            }
+            depStmt.free();
+            this.db.run("COMMIT");
+            this.isDirty = true;
+            this.schedulePersist();
+        }
+        catch (error) {
+            this.db.run("ROLLBACK");
+            logger.error({ error, filePath }, "Failed to index file");
+        }
+    }
+    /**
+     * Remove a file from the index (called by file watcher on delete).
+     */
+    async removeFile(filePath) {
+        await this.initPromise;
+        if (!this.db)
+            return;
+        this.db.run("DELETE FROM files WHERE file_path = ?", [filePath]);
+        this.db.run("DELETE FROM symbols WHERE file_path = ?", [filePath]);
+        this.db.run("DELETE FROM dependencies WHERE from_file = ? OR to_file = ?", [
+            filePath,
+            filePath,
+        ]);
+        this.isDirty = true;
+        this.schedulePersist();
+    }
+    async searchSymbols(query, options = {}) {
+        await this.initPromise;
+        if (!this.db)
+            return [];
+        return searchSymbolsInDb(this.db, query, options);
+    }
+    async getDependents(filePath) {
+        await this.initPromise;
+        if (!this.db)
+            return [];
+        return getDependentsFromDb(this.db, filePath);
+    }
+    async getDependencies(filePath) {
+        await this.initPromise;
+        if (!this.db)
+            return [];
+        return getDependenciesFromDb(this.db, filePath);
+    }
+    async hasIndex() {
+        await this.initPromise;
+        if (!this.db)
+            return false;
+        return hasIndexInDb(this.db);
+    }
+    async getStats() {
+        await this.initPromise;
+        if (!this.db) {
+            return { filesIndexed: 0, symbolsIndexed: 0, dependenciesIndexed: 0, dbSizeBytes: 0, lastIndexedAt: null };
+        }
+        return getIndexStatsFromDb(this.db, this.dbPath);
+    }
+    async clear() {
+        await this.initPromise;
+        if (!this.db)
+            return;
+        this.db.run("DELETE FROM dependencies");
+        this.db.run("DELETE FROM symbols");
+        this.db.run("DELETE FROM files");
+        this.isDirty = true;
+        await this.persist();
+    }
+    // ── Persistence ───────────────────────────────────────────────────────────
+    schedulePersist() {
+        if (this.persistTimer)
+            clearTimeout(this.persistTimer);
+        this.persistTimer = setTimeout(() => this.persist(), 5000);
+    }
+    async persist() {
+        if (!this.isDirty || !this.db)
+            return;
+        try {
+            const data = this.db.export();
+            const tmpPath = `${this.dbPath}.tmp`;
+            await fs.writeFile(tmpPath, Buffer.from(data));
+            await fs.rename(tmpPath, this.dbPath);
+            this.isDirty = false;
+            logger.debug({ dbPath: this.dbPath }, "Index persisted");
+        }
+        catch (error) {
+            logger.error({ error }, "Failed to persist index");
+        }
+    }
+    persistOnExit() {
+        if (!this.isDirty || !this.db)
+            return;
+        try {
+            const data = this.db.export();
+            const tmpPath = `${this.dbPath}.tmp`;
+            writeFileSync(tmpPath, Buffer.from(data));
+            renameSync(tmpPath, this.dbPath);
+            this.isDirty = false;
+        }
+        catch (error) {
+            console.error("Failed to persist index on exit:", error);
+        }
+    }
+    async close() {
+        if (this.persistTimer) {
+            clearTimeout(this.persistTimer);
+            this.persistTimer = null;
+        }
+        await this.persist();
+        if (this.db) {
+            this.db.close();
+            this.db = null;
+        }
+    }
+}
+//# sourceMappingURL=indexManager.js.map

package/dist/src/core/indexManager.js.map

@@ -0,0 +1 @@
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package/dist/src/core/indexManagerQueries.d.ts

@@ -0,0 +1,14 @@
+/**
+ * Index Manager query operations
+ */
+import type { Database } from "sql.js";
+import type { IndexedSymbol, IndexStats } from "./indexManager.js";
+export declare function searchSymbolsInDb(db: Database, query: string, options?: {
+    fuzzy?: boolean;
+    types?: string[];
+    maxResults?: number;
+}): IndexedSymbol[];
+export declare function getDependentsFromDb(db: Database, filePath: string): string[];
+export declare function getDependenciesFromDb(db: Database, filePath: string): string[];
+export declare function hasIndexInDb(db: Database): boolean;
+export declare function getIndexStatsFromDb(db: Database, dbPath: string): Promise<IndexStats>;