mcp-code-context 3.5.0 → 3.5.1

package/CHANGELOG.md

@@ -1,6 +1,6 @@
 # Changelog
 
-## [3.5.0] - 2026-04-24
+## [3.5.1] - 2026-04-24
 
 ### 🔒 PRODUCTION HARDENING - Security & Infrastructure Complete
 
@@ -30,7 +30,7 @@
 - **Security**: SecurityValidator enforced on all 13 handlers
 - **Architecture**: Middleware pipeline (RateLimiter → FileLock → Execute → AuditLog → Telemetry)
 - **Parsers**: Removed 300+ lines of duplicated replaceSymbol code
-- **Version**: Synchronized all version strings to 3.5.0
+- **Version**: Synchronized all version strings to 3.5.1
 
 ### Performance
 - Streaming I/O for files >5MB (prevents memory exhaustion)
@@ -49,7 +49,7 @@
 - ✅ All security tests passing
 - ✅ All rate limiter tests passing
 - ✅ All file lock tests passing
-- ✅ All v3.5.0 feature tests passing
+- ✅ All v3.5.1 feature tests passing
 - ✅ TypeScript: 0 compilation errors
 - ✅ Build: Clean production dist
 

package/CHANGELOG_v3.3.0.md

@@ -251,7 +251,7 @@ try {
 
 ---
 
-## 🚀 Next Steps (v3.5.0)
+## 🚀 Next Steps (v3.5.1)
 
 - [ ] Streaming for files >10MB
 - [ ] Telemetry and observability

package/SECURITY.md

@@ -1,6 +1,6 @@
-# Security Policy - mcp-code-context v3.5.0
+# Security Policy - mcp-code-context v3.5.1
 
-## 🔒 Security Improvements in v3.5.0
+## 🔒 Security Improvements in v3.5.1
 
 This release addresses **all critical security vulnerabilities** from comprehensive adversarial audit, implements full middleware pipeline, and hardens all 13 tool handlers.
 
@@ -10,11 +10,11 @@ This release addresses **all critical security vulnerabilities** from comprehens
 
 ### 1. Path Traversal (HIGH)
 **CVSS Score**: 8.1 (High)
-**Status**: ✅ FIXED in v3.2.0, **hardened in v3.5.0**
+**Status**: ✅ FIXED in v3.2.0, **hardened in v3.5.1**
 
 **Description**: Path traversal check occurred BEFORE path normalization, allowing bypass with absolute paths.
 
-**Fix**: Check boundary AFTER `path.resolve()` normalization. In v3.5.0, **all 13 handlers** now require `projectRoot` and validate via `SecurityValidator`.
+**Fix**: Check boundary AFTER `path.resolve()` normalization. In v3.5.1, **all 13 handlers** now require `projectRoot` and validate via `SecurityValidator`.
 
 ---
 
@@ -40,7 +40,7 @@ This release addresses **all critical security vulnerabilities** from comprehens
 
 ### 4. ReDoS in searchPattern and readLines (MEDIUM)
 **CVSS Score**: 5.3 (Medium)
-**Status**: ✅ FIXED in v3.5.0
+**Status**: ✅ FIXED in v3.5.1
 
 **Description**: User-provided regex patterns could cause catastrophic backtracking.
 
@@ -58,7 +58,7 @@ This release addresses **all critical security vulnerabilities** from comprehens
 
 ### 6. extractSymbol API Mismatch (CRITICAL)
 **CVSS Score**: 9.0 (Critical)
-**Status**: ✅ FIXED in v3.5.0
+**Status**: ✅ FIXED in v3.5.1
 
 **Description**: `read.ts` passed `content` as `symbolName` and real `symbolName` as `className`. Symbol extraction was 100% broken.
 
@@ -68,7 +68,7 @@ This release addresses **all critical security vulnerabilities** from comprehens
 
 ### 7. Handlers Without Path Validation (HIGH)
 **CVSS Score**: 8.5 (High)
-**Status**: ✅ FIXED in v3.5.0
+**Status**: ✅ FIXED in v3.5.1
 
 **Description**: `readLines`, `searchPattern`, `analyzeImpact`, `getSemanticRepoMap` had no path boundary check.
 
@@ -78,7 +78,7 @@ This release addresses **all critical security vulnerabilities** from comprehens
 
 ### 8. renameSymbol Arbitrary Write (HIGH)
 **CVSS Score**: 8.0 (High)
-**Status**: ✅ FIXED in v3.5.0
+**Status**: ✅ FIXED in v3.5.1
 
 **Description**: `renameSymbol` wrote dependent files without SecurityValidator check, using non-atomic writes.
 
@@ -88,7 +88,7 @@ This release addresses **all critical security vulnerabilities** from comprehens
 
 ### 9. LCS Diff OOM (MEDIUM)
 **CVSS Score**: 5.0 (Medium)
-**Status**: ✅ FIXED in v3.5.0
+**Status**: ✅ FIXED in v3.5.1
 
 **Description**: LCS diff algorithm is O(n²) memory — 10K-line files cause OOM.
 
@@ -101,16 +101,16 @@ This release addresses **all critical security vulnerabilities** from comprehens
 ### Defense in Depth
 
 1. **Input Validation**
-   - Path boundary enforcement on ALL handlers (v3.5.0)
+   - Path boundary enforcement on ALL handlers (v3.5.1)
    - File size limits (10MB per file, 50MB total)
    - Regex sanitization + timeout (1s limit)
 
-2. **Two-Phase Write Workflow** (v3.5.0)
+2. **Two-Phase Write Workflow** (v3.5.1)
    - Phase 1: Dry-run returns diff + confirmation token
    - Phase 2: Apply with token (5-minute expiry)
    - Max 50 pending operations
 
-3. **Middleware Pipeline** (v3.5.0)
+3. **Middleware Pipeline** (v3.5.1)
    - Rate limiting (token bucket per operation)
    - File locking (prevents concurrent writes)
    - Audit logging (persistent `.mcp-audit-logs/`)
@@ -160,7 +160,7 @@ node dist-tests/tests/test-security.js
 - [x] Syntax validation
 - [x] Bounded memory in compress
 
-### v3.5.0 ✅
+### v3.5.1 ✅
 - [x] Regex timeout enforcement (safeRegexTest)
 - [x] Rate limiting (token bucket)
 - [x] File locking (concurrent write prevention)
@@ -174,4 +174,4 @@ node dist-tests/tests/test-security.js
 ---
 
 **Last Updated**: 2026-04-24
-**Version**: 3.5.0
+**Version**: 3.5.1

package/dist/src/core/engine.d.ts

@@ -1,5 +1,5 @@
 /**
- * Core Engine - v3.5.0
+ * Core Engine - v3.5.1
  * ASYNC I/O: Migrated to fs.promises
  */
 import { Parser, Language } from "web-tree-sitter";

package/dist/src/core/engine.js

@@ -1,5 +1,5 @@
 /**
- * Core Engine - v3.5.0
+ * Core Engine - v3.5.1
  * ASYNC I/O: Migrated to fs.promises
  */
 import { Parser, Language } from "web-tree-sitter";

package/dist/src/core/validator.d.ts

@@ -1,5 +1,5 @@
 /**
- * Security Validator - v3.5.0
+ * Security Validator - v3.5.1
  * CRITICAL FIX: Path traversal check AFTER normalization
  */
 export interface ValidationResult {

package/dist/src/core/validator.js

@@ -1,5 +1,5 @@
 /**
- * Security Validator - v3.5.0
+ * Security Validator - v3.5.1
  * CRITICAL FIX: Path traversal check AFTER normalization
  */
 import * as path from "node:path";

package/dist/src/index.d.ts

@@ -1,6 +1,6 @@
 #!/usr/bin/env node
 /**
- * mcp-code-context v3.5.0 - Tree-sitter WASM Edition
+ * mcp-code-context v3.5.1 - Tree-sitter WASM Edition
  *
  * Production-ready with:
  * - Tree-sitter WASM for 100% AST accuracy (TypeScript, Python, PHP, Dart)

package/dist/src/index.js

@@ -1,6 +1,6 @@
 #!/usr/bin/env node
 /**
- * mcp-code-context v3.5.0 - Tree-sitter WASM Edition
+ * mcp-code-context v3.5.1 - Tree-sitter WASM Edition
  *
  * Production-ready with:
  * - Tree-sitter WASM for 100% AST accuracy (TypeScript, Python, PHP, Dart)
@@ -28,7 +28,7 @@ import { streamFile } from "./utils/streaming.js";
 import { BackupManager } from "./utils/backupManager.js";
 import * as fs from "node:fs/promises";
 const SERVER_NAME = "mcp-code-context";
-const SERVER_VERSION = "3.5.0";
+const SERVER_VERSION = "3.5.1";
 // Global instances
 let engine;
 let registry;

package/dist/src/operations/compress.d.ts

@@ -1,5 +1,5 @@
 /**
- * Semantic Compression - v3.5.0
+ * Semantic Compression - v3.5.1
  * IMPROVEMENTS: Centralized constants + size limits + timeout
  */
 import { ParserRegistry } from "../parsers/registry.js";

package/dist/src/operations/compress.js

@@ -1,5 +1,5 @@
 /**
- * Semantic Compression - v3.5.0
+ * Semantic Compression - v3.5.1
  * IMPROVEMENTS: Centralized constants + size limits + timeout
  */
 import * as fs from "node:fs/promises";

package/dist/src/operations/confirmationStore.d.ts

@@ -1,5 +1,5 @@
 /**
- * Confirmation Store - v3.5.0
+ * Confirmation Store - v3.5.1
  * Two-phase write: dry-run preview → confirm with token
  * Stores pending write operations with auto-expiry
  */

package/dist/src/operations/confirmationStore.js

@@ -1,5 +1,5 @@
 /**
- * Confirmation Store - v3.5.0
+ * Confirmation Store - v3.5.1
  * Two-phase write: dry-run preview → confirm with token
  * Stores pending write operations with auto-expiry
  */

package/dist/src/operations/read.d.ts

@@ -1,5 +1,5 @@
 /**
- * Read Operations - v3.5.0
+ * Read Operations - v3.5.1
  * FIXES: extractSymbol args, batch regex (worker_threads) in readLines/searchPattern
  */
 import { BaseParser } from "../parsers/base.js";

package/dist/src/operations/read.js

@@ -1,5 +1,5 @@
 /**
- * Read Operations - v3.5.0
+ * Read Operations - v3.5.1
  * FIXES: extractSymbol args, batch regex (worker_threads) in readLines/searchPattern
  */
 import * as fs from "node:fs/promises";

package/dist/src/operations/write.d.ts

@@ -1,5 +1,5 @@
 /**
- * Write Operations - v3.5.0
+ * Write Operations - v3.5.1
  * FIXES: SecurityValidator in renameSymbol, atomic writes, AST-based positioning
  * CRITICAL: renameSymbol Phase 1 is now pure-functional (no disk writes)
  */
@@ -53,7 +53,7 @@ export declare function insertCode(options: InsertOptions): Promise<WriteResult>
 export declare function removeSymbol(options: RemoveOptions): Promise<WriteResult>;
 /**
  * Rename symbol using AST-aware replacement
- * v3.5.0 - CRITICAL FIX: Pure-functional Phase 1 (no writes to disk)
+ * v3.5.1 - CRITICAL FIX: Pure-functional Phase 1 (no writes to disk)
  * All changes are accumulated in pendingWrites for Phase 2 confirmation.
  */
 export declare function renameSymbol(params: {

package/dist/src/operations/write.js

@@ -1,5 +1,5 @@
 /**
- * Write Operations - v3.5.0
+ * Write Operations - v3.5.1
  * FIXES: SecurityValidator in renameSymbol, atomic writes, AST-based positioning
  * CRITICAL: renameSymbol Phase 1 is now pure-functional (no disk writes)
  */
@@ -39,8 +39,17 @@ export async function replaceSymbol(options) {
         const content = await fs.readFile(validation.resolvedPath, "utf-8");
         const tree = parser.parse(content);
         // Use AST-based replacement
-        const result = parser.replaceSymbol(content, tree, symbolName, newContent, className);
-        // Validate syntax of generated code
+        let result;
+        try {
+            result = parser.replaceSymbol(content, tree, symbolName, newContent, className);
+        }
+        catch (replaceError) {
+            return {
+                success: false,
+                error: replaceError instanceof Error ? replaceError.message : String(replaceError),
+            };
+        }
+        // Validate syntax of the resulting file
         const syntaxCheck = validateSyntax(result, parser);
         if (!syntaxCheck.valid) {
             return { success: false, error: syntaxCheck.error };
@@ -164,7 +173,7 @@ export async function removeSymbol(options) {
 }
 /**
  * Rename symbol using AST-aware replacement
- * v3.5.0 - CRITICAL FIX: Pure-functional Phase 1 (no writes to disk)
+ * v3.5.1 - CRITICAL FIX: Pure-functional Phase 1 (no writes to disk)
  * All changes are accumulated in pendingWrites for Phase 2 confirmation.
  */
 export async function renameSymbol(params) {

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package/dist/src/parsers/base.d.ts

@@ -1,5 +1,5 @@
 /**
- * Base Parser - v3.5.0
+ * Base Parser - v3.5.1
  * Abstract base for all language parsers
  * IMPROVEMENT: replaceSymbol moved here using AST indices (eliminates indexOf fragility)
  */

package/dist/src/parsers/base.js

@@ -1,5 +1,5 @@
 /**
- * Base Parser - v3.5.0
+ * Base Parser - v3.5.1
  * Abstract base for all language parsers
  * IMPROVEMENT: replaceSymbol moved here using AST indices (eliminates indexOf fragility)
  */

package/dist/src/parsers/dartTreeSitter.d.ts

@@ -1,5 +1,5 @@
 /**
- * Dart Tree-sitter Parser - v3.5.0
+ * Dart Tree-sitter Parser - v3.5.1
  * 100% AST accuracy via WASM
  * CLEANUP: replaceSymbol removed (inherited from BaseParser)
  */

package/dist/src/parsers/dartTreeSitter.js

@@ -1,5 +1,5 @@
 /**
- * Dart Tree-sitter Parser - v3.5.0
+ * Dart Tree-sitter Parser - v3.5.1
  * 100% AST accuracy via WASM
  * CLEANUP: replaceSymbol removed (inherited from BaseParser)
  */

package/dist/src/parsers/php.d.ts

@@ -1,5 +1,5 @@
 /**
- * PHP Parser - v3.5.0
+ * PHP Parser - v3.5.1
  * CLEANUP: replaceSymbol removed (inherited from BaseParser)
  */
 import { Tree } from "web-tree-sitter";

package/dist/src/parsers/php.js

@@ -1,5 +1,5 @@
 /**
- * PHP Parser - v3.5.0
+ * PHP Parser - v3.5.1
  * CLEANUP: replaceSymbol removed (inherited from BaseParser)
  */
 import { BaseParser } from "./base.js";

package/dist/src/parsers/python.d.ts

@@ -1,5 +1,5 @@
 /**
- * Python Parser - v3.5.0
+ * Python Parser - v3.5.1
  * CLEANUP: replaceSymbol removed (inherited from BaseParser)
  */
 import { Tree } from "web-tree-sitter";

package/dist/src/parsers/python.js

@@ -1,5 +1,5 @@
 /**
- * Python Parser - v3.5.0
+ * Python Parser - v3.5.1
  * CLEANUP: replaceSymbol removed (inherited from BaseParser)
  */
 import { BaseParser } from "./base.js";

package/dist/src/parsers/registry.d.ts

@@ -1,5 +1,5 @@
 /**
- * Parser Registry - v3.5.0
+ * Parser Registry - v3.5.1
  * Manages all language parsers
  */
 import { BaseParser } from "./base.js";

package/dist/src/parsers/registry.js

@@ -1,5 +1,5 @@
 /**
- * Parser Registry - v3.5.0
+ * Parser Registry - v3.5.1
  * Manages all language parsers
  */
 import { TypeScriptParser } from "./typescript.js";

package/dist/src/parsers/typescript.d.ts

@@ -1,5 +1,5 @@
 /**
- * TypeScript Parser - v3.5.0
+ * TypeScript Parser - v3.5.1
  * Tree-sitter based TS/JS parser
  * CLEANUP: replaceSymbol removed (inherited from BaseParser)
  */

package/dist/src/parsers/typescript.js

@@ -1,5 +1,5 @@
 /**
- * TypeScript Parser - v3.5.0
+ * TypeScript Parser - v3.5.1
  * Tree-sitter based TS/JS parser
  * CLEANUP: replaceSymbol removed (inherited from BaseParser)
  */
@@ -61,11 +61,14 @@ export class TypeScriptParser extends BaseParser {
                 const nameNode = node.childForFieldName("name");
                 if (nameNode) {
                     const parentClass = this.findParentClass(node);
+                    // If wrapped in export_statement, use parent indices so replaceSymbol
+                    // includes the "export" keyword — otherwise replacement leaves it orphaned
+                    const exportParent = node.parent?.type === "export_statement" ? node.parent : null;
                     symbols.push({
                         name: nameNode.text,
                         type: node.type,
-                        startIndex: node.startIndex,
-                        endIndex: node.endIndex,
+                        startIndex: exportParent ? exportParent.startIndex : node.startIndex,
+                        endIndex: exportParent ? exportParent.endIndex : node.endIndex,
                         className: parentClass?.childForFieldName("name")?.text,
                     });
                 }

package/dist/src/parsers/typescript.js.map

@@ -1 +1 @@
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package/dist/src/utils/auditLogger.d.ts

@@ -1,5 +1,5 @@
 /**
- * Audit Logger - v3.5.0
+ * Audit Logger - v3.5.1
  * Comprehensive audit trail for all operations
  */
 export interface AuditEntry {

package/dist/src/utils/auditLogger.js

@@ -1,5 +1,5 @@
 /**
- * Audit Logger - v3.5.0
+ * Audit Logger - v3.5.1
  * Comprehensive audit trail for all operations
  */
 import * as fs from "node:fs/promises";

package/dist/src/utils/backupManager.d.ts

@@ -1,5 +1,5 @@
 /**
- * Backup Manager - v3.5.0
+ * Backup Manager - v3.5.1
  * Handles rolling backups for file modifications
  */
 export declare class BackupManager {

package/dist/src/utils/backupManager.js

@@ -1,5 +1,5 @@
 /**
- * Backup Manager - v3.5.0
+ * Backup Manager - v3.5.1
  * Handles rolling backups for file modifications
  */
 import * as fs from "node:fs/promises";

package/dist/src/utils/constants.d.ts

@@ -1,6 +1,6 @@
 /**
  * Constants - Centralized configuration
- * v3.5.0
+ * v3.5.1
  */
 export declare const EXCLUDE_DIRS: string[];
 export declare const SUPPORTED_EXTENSIONS: string[];

package/dist/src/utils/constants.js

@@ -1,6 +1,6 @@
 /**
  * Constants - Centralized configuration
- * v3.5.0
+ * v3.5.1
  */
 export const EXCLUDE_DIRS = [
     "node_modules",

package/dist/src/utils/diff.d.ts

@@ -1,5 +1,5 @@
 /**
- * Diff Engine - v3.5.0
+ * Diff Engine - v3.5.1
  * LCS-based unified diff with memory safety cap
  */
 /**

package/dist/src/utils/diff.js

@@ -1,5 +1,5 @@
 /**
- * Diff Engine - v3.5.0
+ * Diff Engine - v3.5.1
  * LCS-based unified diff with memory safety cap
  */
 const MAX_DIFF_LINES = 5000;

package/dist/src/utils/fileLock.d.ts

@@ -1,5 +1,5 @@
 /**
- * File Lock Manager - v3.5.0
+ * File Lock Manager - v3.5.1
  * Prevents concurrent writes to same file
  */
 interface LockInfo {

package/dist/src/utils/fileLock.js

@@ -1,5 +1,5 @@
 /**
- * File Lock Manager - v3.5.0
+ * File Lock Manager - v3.5.1
  * Prevents concurrent writes to same file
  */
 export class FileLockManager {

package/dist/src/utils/rateLimiter.d.ts

@@ -1,5 +1,5 @@
 /**
- * Rate Limiter - v3.5.0
+ * Rate Limiter - v3.5.1
  * Token bucket algorithm for DoS protection
  */
 interface RateLimitConfig {

package/dist/src/utils/rateLimiter.js

@@ -1,5 +1,5 @@
 /**
- * Rate Limiter - v3.5.0
+ * Rate Limiter - v3.5.1
  * Token bucket algorithm for DoS protection
  */
 export class RateLimiter {

package/dist/src/utils/safeRegex.d.ts

@@ -1,5 +1,5 @@
 /**
- * Safe Regex - v3.5.0
+ * Safe Regex - v3.5.1
  * CRITICAL FIX: Real ReDoS protection via worker_threads
  *
  * Problem: setTimeout cannot interrupt regex.test() in Node.js single-threaded event loop.

package/dist/src/utils/safeRegex.js

@@ -1,5 +1,5 @@
 /**
- * Safe Regex - v3.5.0
+ * Safe Regex - v3.5.1
  * CRITICAL FIX: Real ReDoS protection via worker_threads
  *
  * Problem: setTimeout cannot interrupt regex.test() in Node.js single-threaded event loop.

package/dist/src/utils/streaming.d.ts

@@ -1,5 +1,5 @@
 /**
- * File Streaming - v3.5.0
+ * File Streaming - v3.5.1
  * Stream large files in chunks to avoid memory exhaustion
  */
 export interface StreamOptions {

package/dist/src/utils/streaming.js

@@ -1,5 +1,5 @@
 /**
- * File Streaming - v3.5.0
+ * File Streaming - v3.5.1
  * Stream large files in chunks to avoid memory exhaustion
  */
 import * as fs from "node:fs";

package/dist/src/utils/telemetry.d.ts

@@ -1,5 +1,5 @@
 /**
- * Telemetry - v3.5.0
+ * Telemetry - v3.5.1
  * Metrics collection and monitoring
  */
 export interface Metric {

package/dist/src/utils/telemetry.js

@@ -1,5 +1,5 @@
 /**
- * Telemetry - v3.5.0
+ * Telemetry - v3.5.1
  * Metrics collection and monitoring
  */
 export class TelemetryCollector {

package/llms.txt

@@ -1,8 +1,8 @@
-# mcp-code-context v3.5.0
+# mcp-code-context v3.5.1
 
 > A Model Context Protocol (MCP) server with **Tree-sitter WASM parsers** for 100% AST accuracy. Zero native dependencies. Production-ready with middleware pipeline.
 
-## What's New in v3.5.0
+## What's New in v3.5.1
 
 🔒 **Production Hardening**:
 - ✅ Two-phase write workflow (dry-run + confirmation token)
@@ -142,13 +142,13 @@ This MCP server solves two problems:
 - `steps` (optional): Number of versions to go back (1-5, default: 1).
 **What it does:** Reverts the file to the state it was in before the last 1-5 modifications.
 
-### Write Tools (v3.5.0 Two-Phase Workflow)
+### Write Tools (v3.5.1 Two-Phase Workflow)
 
 All write tools follow a **Two-Phase Workflow**:
 1. **Phase 1 (Preview)**: Call without a token to get a unified `diff` and a `confirmationToken`.
 2. **Phase 2 (Apply)**: Call with `confirmationToken` and `confirm: true` to apply the changes.
 
-**Important Notes (v3.5.0):**
+**Important Notes (v3.5.1):**
 - ✅ **Windows CRLF Support**: Fully resolved. All operations work correctly on Windows files with CRLF line endings.
 - ✅ **Parameter Brace Handling**: Methods with braces in parameters (e.g., `{int? cart}`) are now handled correctly.
 
@@ -236,7 +236,7 @@ All write tools follow a **Two-Phase Workflow**:
 5. **Phase 2: Apply Edit** → Verify the diff, then call with the token and `confirm: true`.
 6. **Recovery** → Use `rollback_file` if needed.
 
-### Additional Tools (v3.5.0)
+### Additional Tools (v3.5.1)
 
 #### 11. `parse_file`
 **Purpose:** Parse a file using Tree-sitter and extract all symbols.

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "mcp-code-context",
-  "version": "3.5.0",
+  "version": "3.5.1",
   "description": "Powerful MCP server with Tree-sitter WASM parsers for 100% AST accuracy. Zero native dependencies. Production-ready with streaming, telemetry, audit logging, rate limiting, file locking, and ReDoS protection. Supports TypeScript, JavaScript, PHP, Dart, and Python.",
   "type": "module",
   "main": "dist/src/index.js",