mcp-ai-agent-guidelines 0.8.0 → 0.9.1

package/README.md

@@ -1,11 +1,15 @@
+<!-- HEADER:START -->
+![Header](docs/.frames-static/09-header.svg)
+<!-- HEADER:END -->
+
 # MCP AI Agent Guidelines Server
 
-> [!CAUTION]
-> **Disclaimer -- Experimental / Early Stage:** This _research demonstrator_ project references third‑party models, tools, pricing, and docs that evolve quickly. Treat outputs as recommendations and verify against official docs and your own benchmarks before production use.
+> [!CAUTION] > **Disclaimer -- Experimental / Early Stage:** This _research demonstrator_ project references third‑party models, tools, pricing, and docs that evolve quickly. Treat outputs as recommendations and verify against official docs and your own benchmarks before production use.
 
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+[![Auto-Regenerate Demos](https://img.shields.io/github/actions/workflow/status/Anselmoo/mcp-ai-agent-guidelines/auto-regenerate-demos.yml?label=demos&logo=github-actions&logoColor=white)](https://github.com/Anselmoo/mcp-ai-agent-guidelines/actions/workflows/auto-regenerate-demos.yml)
+[![Link Checker](https://img.shields.io/github/actions/workflow/status/Anselmoo/mcp-ai-agent-guidelines/link-checker.yml?branch=main&label=links&logo=link&logoColor=white)](https://github.com/Anselmoo/mcp-ai-agent-guidelines/actions/workflows/link-checker.yml)
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@@ -13,10 +17,23 @@
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-A Model Context Protocol (MCP) server offering professional tools and templates for hierarchical prompting, code hygiene, visualization, memory optimization, and agile planning.
+A Model Context Protocol (MCP) server offering advanced tools and templates for hierarchical prompting, code hygiene, visualization, memory optimization, and agile planning.
+
+## 📚 Table of Contents
+
+- [Installation](#installation)
+- [Documentation](#documentation)
+- [Demos](#demos)
+- [Features](#features)
+- [VS Code Integration](#vs-code-integration-one-click)
+- [Agent-Relative Calls](#agent-relative-calls)
+- [Configuration](#configuration)
+- [Development](#development)
+- [Contributing](#contributing)
+- [Changelog](./CHANGELOG.md)
+- [License](#license)
 
 ## Installation
 
@@ -41,46 +58,199 @@ npm run start      # Build and start server
 npm run test:all   # Unit + integration + demos + MCP smoke
 npm run test:coverage:unit # Unit test coverage (c8) -> coverage/ + summary
 npm run quality    # Type-check + Biome checks
+npm run links:check # Check links in main markdown files
+npm run links:check:all # Check links in all markdown files (slow)
 ```
 
+### Local Link Checking
+
+The project includes automated link checking via GitHub Actions. To check links locally before committing:
+
+```bash
+# Quick check (README, CONTRIBUTING, DISCLAIMER)
+npm run links:check
+
+# Comprehensive check (all markdown files)
+npm run links:check:all
+
+# Or use npx directly
+npx markdown-link-check --config .mlc_config.json README.md
+```
+
+Configuration is in `.mlc_config.json`. Ignored patterns and retries are configured there.
+
+## Documentation
+
+## Documentation
+
+**[📖 Complete Documentation Index](./docs/README.md)** - Full guide to all tools and features
+
+### Getting Started Guides
+
+- **[🎯 AI Interaction Tips](./docs/tips/AI_INTERACTION_TIPS.md)** - Learn to ask targeted questions for better results
+- **[📊 Prompting Hierarchy](./docs/tips/PROMPTING_HIERARCHY.md)** - Understanding prompt levels and evaluation
+- **[🔗 Agent-Relative Call Patterns](./docs/tips/AGENT_RELATIVE_CALLS.md)** - Invoking tools in workflows
+
+### Advanced Features
+
+- **[🌊 Flow-Based Prompting](./docs/tips/FLOW_PROMPTING_EXAMPLES.md)** - Multi-step prompt workflows
+- **[🎨 Mermaid Diagram Generation](./docs/tips/MERMAID_DIAGRAM_EXAMPLES.md)** - Create flowcharts, sequences, ER diagrams
+- **[🔍 Code Quality Analysis](./docs/tips/CODE_QUALITY_IMPROVEMENTS.md)** - Hygiene scoring and best practices
+- **[⚡ Sprint Planning](./docs/tips/SPRINT_PLANNING_RELIABILITY.md)** - Dependency-aware timeline calculation
+
+### Integration & Reference
+
+- **[🏗️ Bridge Connectors](./docs/tips/BRIDGE_CONNECTORS.md)** - Integration patterns for external systems
+- **[🔄 Serena Integration](./docs/tips/SERENA_STRATEGIES.md)** - Semantic analysis strategies
+- **[📚 Complete Reference](./docs/tips/REFERENCES.md)** - Credits, research papers, and citations
+
+See **[docs/README.md](./docs/README.md)** for the complete documentation index.
+
+### Quick Links
+
+#### For Users
+
+- **[🎯 AI Interaction Tips](./docs/tips/AI_INTERACTION_TIPS.md)** - Learn to ask targeted questions for better results
+- **[📊 Prompting Hierarchy](./docs/tips/PROMPTING_HIERARCHY.md)** - Understanding prompt levels and evaluation
+- **[🔗 Agent-Relative Call Patterns](./docs/tips/AGENT_RELATIVE_CALLS.md)** - Invoking tools in workflows
+- **[🌊 Flow-Based Prompting](./docs/tips/FLOW_PROMPTING_EXAMPLES.md)** - Advanced chaining strategies
+- **[🎨 Mermaid Diagrams](./docs/tips/MERMAID_DIAGRAM_EXAMPLES.md)** - Visual diagram generation
+
+#### For Developers
+
+- **[🤝 Contributing Guidelines](./CONTRIBUTING.md)** - How to contribute
+- **[✨ Clean Code Initiative](./docs/tips/CLEAN_CODE_INITIATIVE.md)** - Quality standards (100/100 scoring)
+- **[🔧 Technical Improvements](./docs/tips/TECHNICAL_IMPROVEMENTS.md)** - Refactoring and enhancements
+- **[⚠️ Error Handling](./docs/tips/ERROR_HANDLING.md)** - Best practices
+- **[🏗️ Bridge Connectors](./docs/tips/BRIDGE_CONNECTORS.md)** - Integration patterns
+
+See the **[complete documentation](./docs/README.md)** for the full list of guides organized by topic.
+
 ## Demos
 
-Explore generated demo reports in the repository:
+Explore real-world examples showing the tools in action. All demos are auto-generated and kept in sync with the codebase.
+
+**[📖 Complete Demo Index](./demos/README.md)** - Full list of all demos with descriptions
+
+### Featured Examples
+
+**Code Analysis & Quality:**
+
+- [Code Hygiene Report](./demos/demo-code-analysis.hygiene.md) - Pattern detection and best practices
+- [Guidelines Validation](./demos/demo-code-analysis.guidelines.md) - AI agent development standards
+- [Clean Code Scoring](./demos/demo-clean-code-score.md) - Comprehensive quality metrics (0-100)
+
+**Prompt Engineering:**
 
-- Code Hygiene Report: [demos/demo-code-analysis.hygiene.md](./demos/demo-code-analysis.hygiene.md)
-- Guidelines Validation: [demos/demo-code-analysis.guidelines.md](./demos/demo-code-analysis.guidelines.md)
-- Hierarchical Prompt (Refactor plan): [demos/demo-code-analysis.hierarchical.prompt.md](./demos/demo-code-analysis.hierarchical.prompt.md)
-- Domain-neutral Prompt Template: [demos/demo-code-analysis.domain-neutral.prompt.md](./demos/demo-code-analysis.domain-neutral.prompt.md)
-- Security Hardening Prompt: [demos/demo-code-analysis.security-hardening.prompt.md](./demos/demo-code-analysis.security-hardening.prompt.md)
-- Spark Prompt Card: [demos/demo-code-analysis.spark.prompt.md](./demos/demo-code-analysis.spark.prompt.md)
-- Memory Context Optimization: [demos/demo-code-analysis.memory.md](./demos/demo-code-analysis.memory.md)
-- Architecture Diagram (Mermaid): [demos/demo-code-analysis.diagram.md](./demos/demo-code-analysis.diagram.md)
-- Model Compatibility Analysis: [demos/demo-code-analysis.model-compat.md](./demos/demo-code-analysis.model-compat.md)
-- Sprint Plan: [demos/demo-code-analysis.sprint.md](./demos/demo-code-analysis.sprint.md)
+- [Hierarchical Prompt](./demos/demo-code-analysis.hierarchical.prompt.md) - Structured refactoring plan
+- [Domain-Neutral Prompt](./demos/demo-code-analysis.domain-neutral.prompt.md) - Generic template
+- [Security Hardening Prompt](./demos/demo-code-analysis.security-hardening.prompt.md) - OWASP-focused analysis
+- [Flow-Based Prompting](./demos/demo-design-session.md) - Multi-step workflows
 
-See more in [demos/README.md](./demos/README.md).
+**Visualization & Planning:**
 
-### Demo scripts (.js)
+- [Architecture Diagram](./demos/demo-code-analysis.diagram.md) - Mermaid system diagrams
+- [Sprint Planning](./demos/demo-code-analysis.sprint.md) - Dependency-aware timeline
+- [Model Compatibility](./demos/demo-code-analysis.model-compat.md) - AI model selection
 
-Run demo scripts to generate or test artifacts:
+**Advanced Features:**
+
+- [Memory Context Optimization](./demos/demo-code-analysis.memory.md) - Token efficiency
+- [Strategy Frameworks](./demos/demo-strategy-frameworks.md) - SWOT, BCG, Porter's Five Forces
+- [Gap Analysis](./demos/demo-gap-analysis.md) - Current vs. desired state
+
+### Running Demos Locally
 
 ```bash
-# Build first
 npm run build
+node demos/demo-tools.js  # Generate sample tool outputs
+```
 
-# Run sample tool calls
-node demos/demo-tools.js
+Demos are automatically regenerated when tool code changes via GitHub Actions.
 
-# Generate demo reports
-node demos/demo-tools.js
-```
+## Features & Tools
+
+**27 professional tools** for AI-powered development workflows. Each tool is rated by complexity:
+
+**⭐ Complexity Ratings:**
+
+- ⭐ **Simple** - Single input, immediate output (5-10 min to master)
+- ⭐⭐ **Moderate** - Multiple parameters, straightforward usage (15-30 min)
+- ⭐⭐⭐ **Advanced** - Complex inputs, requires understanding of domain (1-2 hours)
+- ⭐⭐⭐⭐ **Expert** - Multi-phase workflows, deep domain knowledge (half day)
+- ⭐⭐⭐⭐⭐ **Master** - Enterprise-scale, comprehensive orchestration (1-2 days)
+
+**📖 [Complete Tools Reference](./docs/tips/TOOLS_REFERENCE.md)** - Detailed documentation with examples
+
+---
+
+### 🎨 Prompt Builders (9 tools)
+
+Build structured, effective prompts for various use cases.
+
+| Tool                                          | Purpose                                                         | Complexity | Learn More                                                           |
+| --------------------------------------------- | --------------------------------------------------------------- | ---------- | -------------------------------------------------------------------- |
+| `hierarchical-prompt-builder`                 | Multi-level specificity prompts (context → goal → requirements) | ⭐⭐       | [Guide](./docs/tools/hierarchical-prompt-builder.md)                 |
+| `code-analysis-prompt-builder`                | Code review prompts (security, performance, maintainability)    | ⭐⭐       | [Guide](./docs/tools/code-analysis-prompt-builder.md)                |
+| `architecture-design-prompt-builder`          | Architecture design with scale-appropriate guidance             | ⭐⭐⭐     | [Guide](./docs/tools/architecture-design-prompt-builder.md)          |
+| `digital-enterprise-architect-prompt-builder` | Enterprise architecture with mentor perspectives & research     | ⭐⭐⭐⭐   | [Guide](./docs/tools/digital-enterprise-architect-prompt-builder.md) |
+| `debugging-assistant-prompt-builder`          | Systematic debugging prompts with structured analysis           | ⭐⭐       | [Guide](./docs/tools/debugging-assistant-prompt-builder.md)          |
+| `l9-distinguished-engineer-prompt-builder`    | L9 (Distinguished Engineer) high-level technical design         | ⭐⭐⭐⭐⭐ | [Guide](./docs/tools/l9-distinguished-engineer-prompt-builder.md)    |
+| `documentation-generator-prompt-builder`      | Technical docs tailored to audience (API, user guide, spec)     | ⭐⭐       | [Guide](./docs/tools/documentation-generator-prompt-builder.md)      |
+| `domain-neutral-prompt-builder`               | Generic templates with objectives and workflows                 | ⭐⭐⭐     | [Guide](./docs/tools/domain-neutral-prompt-builder.md)               |
+| `security-hardening-prompt-builder`           | Security analysis with OWASP/compliance focus                   | ⭐⭐⭐     | [Guide](./docs/tools/security-hardening-prompt-builder.md)           |
+
+### 🔍 Code Analysis & Quality (7 tools)
+
+Analyze and improve code quality with automated insights.
+
+| Tool                          | Purpose                                                            | Complexity | Learn More                                           |
+| ----------------------------- | ------------------------------------------------------------------ | ---------- | ---------------------------------------------------- |
+| `clean-code-scorer`           | Comprehensive 0-100 quality score with metric breakdown            | ⭐⭐⭐     | [Guide](./docs/tools/clean-code-scorer.md)           |
+| `code-hygiene-analyzer`       | Detect outdated patterns, unused dependencies, code smells         | ⭐⭐       | [Guide](./docs/tools/code-hygiene-analyzer.md)       |
+| `dependency-auditor`          | Audit package.json for security, deprecation, ESM compatibility    | ⭐         | [Guide](./docs/tools/dependency-auditor.md)          |
+| `iterative-coverage-enhancer` | Analyze coverage gaps, generate test suggestions, adapt thresholds | ⭐⭐⭐     | [Guide](./docs/tools/iterative-coverage-enhancer.md) |
+| `semantic-code-analyzer`      | Identify symbols, structure, dependencies, patterns (LSP-based)    | ⭐⭐       | [Guide](./docs/tools/semantic-code-analyzer.md)      |
+| `guidelines-validator`        | Validate practices against AI agent development guidelines         | ⭐         | [Guide](./docs/tools/guidelines-validator.md)        |
+| `mermaid-diagram-generator`   | Generate visual diagrams (flowchart, sequence, ER, class, etc.)    | ⭐⭐       | [Guide](./docs/tools/mermaid-diagram-generator.md)   |
+
+### 📊 Strategy & Planning (5 tools)
+
+Business strategy analysis and agile project planning.
 
-Scripts:
-- `demos/demo-tools.js` — invokes several tools with sample inputs
-- `demos/generate-demo-reports.js` — produces end-to-end demo outputs
-- `demos/generate-hygiene-reports.js` — hygiene-focused reports
+| Tool                          | Purpose                                                               | Complexity | Learn More                                           |
+| ----------------------------- | --------------------------------------------------------------------- | ---------- | ---------------------------------------------------- |
+| `strategy-frameworks-builder` | SWOT, BSC, VRIO, Porter's Five Forces, market analysis                | ⭐⭐⭐     | [Guide](./docs/tools/strategy-frameworks-builder.md) |
+| `gap-frameworks-analyzers`    | Capability, technology, maturity, skills gap analysis                 | ⭐⭐⭐     | [Guide](./docs/tools/gap-frameworks-analyzers.md)    |
+| `sprint-timeline-calculator`  | Dependency-aware sprint planning with bin-packing optimization        | ⭐⭐       | [Guide](./docs/tools/sprint-timeline-calculator.md)  |
+| `model-compatibility-checker` | Recommend best AI models for task requirements and budget             | ⭐         | [Guide](./docs/tools/model-compatibility-checker.md) |
+| `project-onboarding`          | Comprehensive project structure analysis and documentation generation | ⭐⭐       | [Guide](./docs/tools/project-onboarding.md)          |
 
-## VS Code Integration (One‑Click)
+### 🎨 Design Workflow (1 tool)
+
+Multi-phase design orchestration with constraint enforcement.
+
+| Tool               | Purpose                                                                            | Complexity | Learn More                                |
+| ------------------ | ---------------------------------------------------------------------------------- | ---------- | ----------------------------------------- |
+| `design-assistant` | Constraint-driven design sessions with artifact generation (ADRs, specs, roadmaps) | ⭐⭐⭐⭐   | [Guide](./docs/tools/design-assistant.md) |
+
+### 🛠️ Utilities (5 tools)
+
+Supporting tools for workflow optimization.
+
+| Tool                            | Purpose                                                                             | Complexity | Learn More                                             |
+| ------------------------------- | ----------------------------------------------------------------------------------- | ---------- | ------------------------------------------------------ |
+| `memory-context-optimizer`      | Optimize prompt caching and context window usage                                    | ⭐⭐       | [Guide](./docs/tools/memory-context-optimizer.md)      |
+| `mode-switcher`                 | Switch between agent operation modes (planning, debugging, refactoring)             | ⭐         | [Guide](./docs/tools/mode-switcher.md)                 |
+| `prompting-hierarchy-evaluator` | Evaluate prompts with numeric scoring (clarity, specificity, completeness)          | ⭐⭐       | [Guide](./docs/tools/prompting-hierarchy-evaluator.md) |
+| `hierarchy-level-selector`      | Select optimal prompting level for task complexity                                  | ⭐         | [Guide](./docs/tools/hierarchy-level-selector.md)      |
+| `spark-prompt-builder`          | Build UI/UX product prompts with structured inputs (colors, typography, components) | ⭐⭐⭐     | [Guide](./docs/tools/spark-prompt-builder.md)          |
+
+**💡 Pro Tip**: Start with ⭐ tools to learn the basics, then progress to ⭐⭐⭐+ tools for advanced workflows.
+
+---
+
+## VS Code Integration (One-Click)
 
 Use buttons below to add this MCP server to VS Code (User Settings → mcp.servers):
 
@@ -93,14 +263,14 @@ Manual settings (User Settings JSON):
 
 ```json
 {
-	"mcp": {
-		"servers": {
-			"ai-agent-guidelines": {
-				"command": "npx",
-				"args": ["-y", "mcp-ai-agent-guidelines"]
-			}
-		}
-	}
+  "mcp": {
+    "servers": {
+      "ai-agent-guidelines": {
+        "command": "npx",
+        "args": ["-y", "mcp-ai-agent-guidelines"]
+      }
+    }
+  }
 }
 ```
 
@@ -108,19 +278,19 @@ Using Docker:
 
 ```json
 {
-	"mcp": {
-		"servers": {
-			"ai-agent-guidelines": {
-				"command": "docker",
-				"args": [
-					"run",
-					"--rm",
-					"-i",
-					"ghcr.io/anselmoo/mcp-ai-agent-guidelines:latest"
-				]
-			}
-		}
-	}
+  "mcp": {
+    "servers": {
+      "ai-agent-guidelines": {
+        "command": "docker",
+        "args": [
+          "run",
+          "--rm",
+          "-i",
+          "ghcr.io/anselmoo/mcp-ai-agent-guidelines:latest"
+        ]
+      }
+    }
+  }
 }
 ```
 
@@ -129,13 +299,14 @@ Using Docker:
 After adding the server, open your chat client (e.g., Cline in VS Code). The tools appear under the server name. You can:
 
 - Run a tool directly by name:
-	- `hierarchical-prompt-builder` — Provide context, goal, and optional requirements.
-	- `clean-code-scorer` — Calculate comprehensive Clean Code score (0-100) with coverage metrics.
-	- `code-hygiene-analyzer` — Paste code or point to a file and set language.
-	- `mermaid-diagram-generator` — Describe the system and select a diagram type.
+  - `hierarchical-prompt-builder` — Provide context, goal, and optional requirements.
+  - `clean-code-scorer` — Calculate comprehensive Clean Code score (0-100) with coverage metrics.
+  - `code-hygiene-analyzer` — Paste code or point to a file and set language.
+  - `mermaid-diagram-generator` — Describe the system and select a diagram type.
 - Ask in natural language and pick the suggested tool.
 
 Example prompts:
+
 - "Use hierarchical-prompt-builder to create a refactor plan for src/index.ts with outputFormat markdown."
 - "Use clean-code-scorer to analyze my project with current coverage metrics and get a quality score."
 - "Analyze this Python file with code-hygiene-analyzer; highlight security issues."
@@ -147,36 +318,99 @@ Tip: Most clients can pass file content automatically when you select a file and
 
 GitHub Chat (VS Code): In the chat, type your request and pick a tool suggestion, or explicitly reference a tool by name (e.g., “Use mermaid-diagram-generator to draw a flowchart for our pipeline”).
 
-## Features
+## Agent-Relative Calls
+
+This MCP server fully supports **agent-relative calls**, the MCP standard pattern for enabling AI agents to discover and invoke tools contextually. Following the [GitHub MCP documentation](https://docs.github.com/en/copilot/tutorials/enhance-agent-mode-with-mcp), agents can use natural language patterns to orchestrate complex multi-tool workflows.
 
-> **🏆 NEW: Clean Code 100/100 Initiative** — Comprehensive code quality scoring system with automated dashboard generation. Track and achieve perfect code quality across coverage, TypeScript, linting, and security. See [docs/CLEAN_CODE_INITIATIVE.md](./docs/CLEAN_CODE_INITIATIVE.md) for the complete guide.
-> - **Dashboard**: Run `npm run clean-code-dashboard` to generate score report
-> - **MCP Tool**: `clean-code-scorer` for on-demand quality analysis
-> - **Automated Gates**: Lefthook quality gates enforce standards on every commit
+### What Are Agent-Relative Calls?
 
-> **🆕 NEW: Serena-Inspired Strategies** — We've integrated effective agent strategies from [@oraios/serena](https://github.com/oraios/serena) including semantic code analysis, project onboarding, and flexible mode switching. See [docs/SERENA_STRATEGIES.md](./docs/SERENA_STRATEGIES.md) for details.
+Agent-relative calls are natural language patterns like:
 
-> **🌊 NEW: Flow-Based Prompting** — Advanced prompting strategies inspired by [@ruvnet/claude-flow](https://github.com/ruvnet/claude-flow) including prompt chaining, declarative flows, and dynamic orchestration.
-> - **Examples**: [docs/FLOW_PROMPTING_EXAMPLES.md](./docs/FLOW_PROMPTING_EXAMPLES.md)
-> - **Integration Guide**: [docs/FLOW_SERENA_INTEGRATION.md](./docs/FLOW_SERENA_INTEGRATION.md) - Combining flow-based prompting with Serena memory patterns
+```markdown
+Use the [tool-name] MCP to [action] with [parameters/context]
+```
+
+### Quick Examples
+
+**Single Tool Invocation:**
+
+```markdown
+Use the hierarchical-prompt-builder MCP to create a code review prompt for our authentication module focusing on security best practices and OAuth2 implementation.
+```
+
+**Multi-Tool Workflow:**
+
+```markdown
+1. Use the clean-code-scorer MCP to establish baseline quality metrics
+2. Use the code-hygiene-analyzer MCP to identify specific technical debt
+3. Use the security-hardening-prompt-builder MCP to create a remediation plan
+4. Use the sprint-timeline-calculator MCP to estimate implementation timeline
+```
+
+**Integration with Other MCP Servers:**
+
+```markdown
+# Accessibility Compliance Workflow
+
+Use the Figma MCP to analyze design specifications for WCAG 2.1 AA compliance.
+Use the security-hardening-prompt-builder MCP from AI Agent Guidelines to create accessibility security audit prompts.
+Use the GitHub MCP to categorize open accessibility issues.
+Use the iterative-coverage-enhancer MCP from AI Agent Guidelines to plan accessibility test coverage.
+Use the Playwright MCP to create and run automated accessibility tests.
+```
+
+### Comprehensive Guide
+
+For complete documentation with 20+ detailed examples, workflow patterns, and best practices, see:
+
+📘 **[Agent-Relative Call Patterns Guide](./docs/tips/AGENT_RELATIVE_CALLS.md)**
+
+This guide covers:
+
+- Core prompt patterns (single tool, chains, parallel, conditional)
+- Tool categories with complete usage examples
+- Multi-MCP server integration workflows
+- Best practices for agent-driven development
+- Performance optimization techniques
+- Troubleshooting common issues
+
+### Available Resources
+
+Access agent-relative call guidance via MCP resources:
+
+```markdown
+Use the resource guidelines://agent-relative-calls to get comprehensive patterns and examples
+```
+
+Or access programmatically:
+
+```typescript
+// MCP ReadResource request
+{
+  uri: "guidelines://agent-relative-calls";
+}
+```
+
+## Features
 
 <details>
-<summary><strong>🔗 Prompt Chaining Builder</strong> — Multi-step prompts with output passing (NEW)</summary>
+<summary><strong>🔗 Prompt Chaining Builder</strong> — Multi-step prompts with output passing</summary>
 
 Usage: `prompt-chaining-builder`
 
-| Parameter      | Required | Description                           |
-| -------------- | -------- | ------------------------------------- |
-| `chainName`    | ✅        | Name of the prompt chain              |
-| `steps`        | ✅        | Array of chain steps with prompts     |
-| `description`  | ❌        | Description of chain purpose          |
-| `context`      | ❌        | Global context for the chain          |
-| `globalVariables` | ❌     | Variables accessible to all steps     |
-| `executionStrategy` | ❌   | sequential/parallel-where-possible    |
+| Parameter           | Required | Description                        |
+| ------------------- | -------- | ---------------------------------- |
+| `chainName`         | ✅       | Name of the prompt chain           |
+| `steps`             | ✅       | Array of chain steps with prompts  |
+| `description`       | ❌       | Description of chain purpose       |
+| `context`           | ❌       | Global context for the chain       |
+| `globalVariables`   | ❌       | Variables accessible to all steps  |
+| `executionStrategy` | ❌       | sequential/parallel-where-possible |
 
 Build sophisticated multi-step prompt workflows where each step can depend on outputs from previous steps. Supports error handling strategies (skip/retry/abort) and automatic Mermaid visualization.
 
 **Example:**
+
 ```typescript
 {
   chainName: "Security Analysis Pipeline",
@@ -199,22 +433,23 @@ Build sophisticated multi-step prompt workflows where each step can depend on ou
 </details>
 
 <details>
-<summary><strong>🌊 Prompt Flow Builder</strong> — Declarative flows with branching/loops (NEW)</summary>
+<summary><strong>🌊 Prompt Flow Builder</strong> — Declarative flows with branching/loops</summary>
 
 Usage: `prompt-flow-builder`
 
-| Parameter      | Required | Description                           |
-| -------------- | -------- | ------------------------------------- |
-| `flowName`     | ✅        | Name of the prompt flow               |
-| `nodes`        | ✅        | Flow nodes (prompt/condition/loop/parallel/merge/transform) |
-| `edges`        | ❌        | Connections between nodes with conditions |
-| `entryPoint`   | ❌        | Starting node ID                      |
-| `variables`    | ❌        | Flow-level variables                  |
-| `outputFormat` | ❌        | markdown/mermaid/both                 |
+| Parameter      | Required | Description                                                 |
+| -------------- | -------- | ----------------------------------------------------------- |
+| `flowName`     | ✅       | Name of the prompt flow                                     |
+| `nodes`        | ✅       | Flow nodes (prompt/condition/loop/parallel/merge/transform) |
+| `edges`        | ❌       | Connections between nodes with conditions                   |
+| `entryPoint`   | ❌       | Starting node ID                                            |
+| `variables`    | ❌       | Flow-level variables                                        |
+| `outputFormat` | ❌       | markdown/mermaid/both                                       |
 
 Create complex adaptive prompt flows with conditional branching, loops, parallel execution, and merge points. Automatically generates Mermaid flowcharts and execution guides.
 
 **Example:**
+
 ```typescript
 {
   flowName: "Adaptive Code Review",
@@ -236,48 +471,48 @@ Create complex adaptive prompt flows with conditional branching, loops, parallel
 </details>
 
 <details>
-<summary><strong>🔍 Semantic Code Analyzer</strong> — Symbol-based code understanding (NEW)</summary>
+<summary><strong>🔍 Semantic Code Analyzer</strong> — Symbol-based code understanding</summary>
 
 Usage: `semantic-code-analyzer`
 
-| Parameter      | Required | Description                           |
-| -------------- | -------- | ------------------------------------- |
-| `codeContent`  | ✅        | Code content to analyze               |
-| `language`     | ❌        | Programming language (auto-detected)  |
-| `analysisType` | ❌        | symbols/structure/dependencies/patterns/all |
+| Parameter      | Required | Description                                 |
+| -------------- | -------- | ------------------------------------------- |
+| `codeContent`  | ✅       | Code content to analyze                     |
+| `language`     | ❌       | Programming language (auto-detected)        |
+| `analysisType` | ❌       | symbols/structure/dependencies/patterns/all |
 
 Performs semantic analysis to identify symbols, dependencies, patterns, and structure. Inspired by Serena's language server approach.
 
 </details>
 
 <details>
-<summary><strong>🚀 Project Onboarding</strong> — Comprehensive project familiarization (NEW)</summary>
+<summary><strong>🚀 Project Onboarding</strong> — Comprehensive project familiarization</summary>
 
 Usage: `project-onboarding`
 
-| Parameter      | Required | Description                           |
-| -------------- | -------- | ------------------------------------- |
-| `projectPath`  | ✅        | Path to project directory             |
-| `projectName`  | ❌        | Name of the project                   |
-| `projectType`  | ❌        | library/application/service/tool/other |
-| `analysisDepth`| ❌        | quick/standard/deep                   |
-| `includeMemories` | ❌     | Generate project memories (default: true) |
+| Parameter         | Required | Description                               |
+| ----------------- | -------- | ----------------------------------------- |
+| `projectPath`     | ✅       | Path to project directory                 |
+| `projectName`     | ❌       | Name of the project                       |
+| `projectType`     | ❌       | library/application/service/tool/other    |
+| `analysisDepth`   | ❌       | quick/standard/deep                       |
+| `includeMemories` | ❌       | Generate project memories (default: true) |
 
 Analyzes project structure, detects technologies, and generates memories for context retention. Based on Serena's onboarding system.
 
 </details>
 
 <details>
-<summary><strong>🔄 Mode Switcher</strong> — Flexible agent operation modes (NEW)</summary>
+<summary><strong>🔄 Mode Switcher</strong> — Flexible agent operation modes</summary>
 
 Usage: `mode-switcher`
 
-| Parameter      | Required | Description                           |
-| -------------- | -------- | ------------------------------------- |
-| `targetMode`   | ✅        | Mode to switch to (planning/editing/analysis/etc.) |
-| `currentMode`  | ❌        | Current active mode                   |
-| `context`      | ❌        | Operating context (desktop-app/ide-assistant/etc.) |
-| `reason`       | ❌        | Reason for mode switch                |
+| Parameter     | Required | Description                                        |
+| ------------- | -------- | -------------------------------------------------- |
+| `targetMode`  | ✅       | Mode to switch to (planning/editing/analysis/etc.) |
+| `currentMode` | ❌       | Current active mode                                |
+| `context`     | ❌       | Operating context (desktop-app/ide-assistant/etc.) |
+| `reason`      | ❌       | Reason for mode switch                             |
 
 Switches between operation modes with optimized tool sets and prompting strategies. Modes include: planning, editing, analysis, interactive, one-shot, debugging, refactoring, documentation.
 
@@ -290,11 +525,11 @@ Usage: `hierarchical-prompt-builder`
 
 | Parameter      | Required | Description                           |
 | -------------- | -------- | ------------------------------------- |
-| `context`      | ✅        | The broad context or domain           |
-| `goal`         | ✅        | The specific goal or objective        |
-| `requirements` | ❌        | Detailed requirements and constraints |
-| `outputFormat` | ❌        | Desired output format                 |
-| `audience`     | ❌        | Target audience or expertise level    |
+| `context`      | ✅       | The broad context or domain           |
+| `goal`         | ✅       | The specific goal or objective        |
+| `requirements` | ❌       | Detailed requirements and constraints |
+| `outputFormat` | ❌       | Desired output format                 |
+| `audience`     | ❌       | Target audience or expertise level    |
 
 </details>
 
@@ -305,9 +540,9 @@ Usage: `code-hygiene-analyzer`
 
 | Parameter     | Required | Description                   |
 | ------------- | -------- | ----------------------------- |
-| `codeContent` | ✅        | Code content to analyze       |
-| `language`    | ✅        | Programming language          |
-| `framework`   | ❌        | Framework or technology stack |
+| `codeContent` | ✅       | Code content to analyze       |
+| `language`    | ✅       | Programming language          |
+| `framework`   | ❌       | Framework or technology stack |
 
 </details>
 
@@ -316,18 +551,19 @@ Usage: `code-hygiene-analyzer`
 
 Usage: `security-hardening-prompt-builder`
 
-| Parameter | Required | Description |
-| --------- | -------- | ----------- |
-| `codeContext` | ✅ | Code context or description to analyze for security |
-| `securityFocus` | ❌ | Security analysis focus (vulnerability-analysis, security-hardening, compliance-check, threat-modeling, penetration-testing) |
-| `securityRequirements` | ❌ | Specific security requirements to check |
-| `complianceStandards` | ❌ | Compliance standards (OWASP-Top-10, NIST-Cybersecurity-Framework, ISO-27001, SOC-2, GDPR, HIPAA, PCI-DSS) |
-| `language` | ❌ | Programming language of the code |
-| `riskTolerance` | ❌ | Risk tolerance level (low, medium, high) |
-| `analysisScope` | ❌ | Security areas to focus on (input-validation, authentication, authorization, etc.) |
-| `outputFormat` | ❌ | Output format (detailed, checklist, annotated-code) |
+| Parameter              | Required | Description                                                                                                                  |
+| ---------------------- | -------- | ---------------------------------------------------------------------------------------------------------------------------- |
+| `codeContext`          | ✅       | Code context or description to analyze for security                                                                          |
+| `securityFocus`        | ❌       | Security analysis focus (vulnerability-analysis, security-hardening, compliance-check, threat-modeling, penetration-testing) |
+| `securityRequirements` | ❌       | Specific security requirements to check                                                                                      |
+| `complianceStandards`  | ❌       | Compliance standards (OWASP-Top-10, NIST-Cybersecurity-Framework, ISO-27001, SOC-2, GDPR, HIPAA, PCI-DSS)                    |
+| `language`             | ❌       | Programming language of the code                                                                                             |
+| `riskTolerance`        | ❌       | Risk tolerance level (low, medium, high)                                                                                     |
+| `analysisScope`        | ❌       | Security areas to focus on (input-validation, authentication, authorization, etc.)                                           |
+| `outputFormat`         | ❌       | Output format (detailed, checklist, annotated-code)                                                                          |
 
 **Security Focus Areas:**
+
 - 🔍 Vulnerability analysis with OWASP Top 10 coverage
 - 🛡️ Security hardening recommendations
 - 📋 Compliance checking against industry standards
@@ -345,18 +581,18 @@ Usage: `mermaid-diagram-generator`
 
 Generates Mermaid diagrams with intelligent parsing of descriptions for rich, customizable visualizations.
 
-| Parameter          | Required | Description                                                                                                                                          |
-| ------------------ | -------- | ---------------------------------------------------------------------------------------------------------------------------------------------------- |
-| `description`      | ✅        | Description of the system or process to diagram. Be detailed and specific for better diagram generation.                                            |
-| `diagramType`      | ✅        | Type: `flowchart`, `sequence`, `class`, `state`, `gantt`, `pie`, `er`, `journey`, `quadrant`, `git-graph`, `mindmap`, `timeline`                   |
-| `theme`            | ❌        | Visual theme: `default`, `dark`, `forest`, `neutral`                                                                                                 |
-| `direction`        | ❌        | Flowchart direction: `TD`/`TB` (top-down), `BT` (bottom-top), `LR` (left-right), `RL` (right-left)                                                  |
-| `strict`           | ❌        | If true, never emit invalid diagram; use fallback if needed (default: true)                                                                          |
-| `repair`           | ❌        | Attempt auto-repair on validation failure (default: true)                                                                                            |
-| `accTitle`         | ❌        | Accessibility title (added as Mermaid comment)                                                                                                       |
-| `accDescr`         | ❌        | Accessibility description (added as Mermaid comment)                                                                                                 |
-| `customStyles`     | ❌        | Custom CSS/styling directives for advanced customization                                                                                             |
-| `advancedFeatures` | ❌        | Type-specific advanced features (e.g., `{autonumber: true}` for sequence diagrams)                                                                   |
+| Parameter          | Required | Description                                                                                                                      |
+| ------------------ | -------- | -------------------------------------------------------------------------------------------------------------------------------- |
+| `description`      | ✅       | Description of the system or process to diagram. Be detailed and specific for better diagram generation.                         |
+| `diagramType`      | ✅       | Type: `flowchart`, `sequence`, `class`, `state`, `gantt`, `pie`, `er`, `journey`, `quadrant`, `git-graph`, `mindmap`, `timeline` |
+| `theme`            | ❌       | Visual theme: `default`, `dark`, `forest`, `neutral`                                                                             |
+| `direction`        | ❌       | Flowchart direction: `TD`/`TB` (top-down), `BT` (bottom-top), `LR` (left-right), `RL` (right-left)                               |
+| `strict`           | ❌       | If true, never emit invalid diagram; use fallback if needed (default: true)                                                      |
+| `repair`           | ❌       | Attempt auto-repair on validation failure (default: true)                                                                        |
+| `accTitle`         | ❌       | Accessibility title (added as Mermaid comment)                                                                                   |
+| `accDescr`         | ❌       | Accessibility description (added as Mermaid comment)                                                                             |
+| `customStyles`     | ❌       | Custom CSS/styling directives for advanced customization                                                                         |
+| `advancedFeatures` | ❌       | Type-specific advanced features (e.g., `{autonumber: true}` for sequence diagrams)                                               |
 
 **Enhanced Features:**
 
@@ -422,9 +658,9 @@ Usage: `memory-context-optimizer`
 
 | Parameter        | Required | Description                                        |
 | ---------------- | -------- | -------------------------------------------------- |
-| `contextContent` | ✅        | Context content to optimize                        |
-| `maxTokens`      | ❌        | Maximum token limit                                |
-| `cacheStrategy`  | ❌        | Strategy: `aggressive`, `conservative`, `balanced` |
+| `contextContent` | ✅       | Context content to optimize                        |
+| `maxTokens`      | ❌       | Maximum token limit                                |
+| `cacheStrategy`  | ❌       | Strategy: `aggressive`, `conservative`, `balanced` |
 
 </details>
 
@@ -435,10 +671,10 @@ Usage: `sprint-timeline-calculator`
 
 | Parameter      | Required | Description                             |
 | -------------- | -------- | --------------------------------------- |
-| `tasks`        | ✅        | List of tasks with estimates            |
-| `teamSize`     | ✅        | Number of team members                  |
-| `sprintLength` | ❌        | Sprint length in days                   |
-| `velocity`     | ❌        | Team velocity (story points per sprint) |
+| `tasks`        | ✅       | List of tasks with estimates            |
+| `teamSize`     | ✅       | Number of team members                  |
+| `sprintLength` | ❌       | Sprint length in days                   |
+| `velocity`     | ❌       | Team velocity (story points per sprint) |
 
 </details>
 
@@ -449,9 +685,9 @@ Usage: `model-compatibility-checker`
 
 | Parameter         | Required | Description                                              |
 | ----------------- | -------- | -------------------------------------------------------- |
-| `taskDescription` | ✅        | Description of the task                                  |
-| `requirements`    | ❌        | Specific requirements (context length, multimodal, etc.) |
-| `budget`          | ❌        | Budget constraints: `low`, `medium`, `high`              |
+| `taskDescription` | ✅       | Description of the task                                  |
+| `requirements`    | ❌       | Specific requirements (context length, multimodal, etc.) |
+| `budget`          | ❌       | Budget constraints: `low`, `medium`, `high`              |
 
 </details>
 
@@ -462,8 +698,8 @@ Usage: `guidelines-validator`
 
 | Parameter             | Required | Description                                                                                     |
 | --------------------- | -------- | ----------------------------------------------------------------------------------------------- |
-| `practiceDescription` | ✅        | Description of the development practice                                                         |
-| `category`            | ✅        | Category: `prompting`, `code-management`, `architecture`, `visualization`, `memory`, `workflow` |
+| `practiceDescription` | ✅       | Description of the development practice                                                         |
+| `category`            | ✅       | Category: `prompting`, `code-management`, `architecture`, `visualization`, `memory`, `workflow` |
 
 </details>
 
@@ -488,11 +724,12 @@ Use the [Release Setup Issue Form](.github/ISSUE_TEMPLATE/release-setup.yml) to
 - **Quality gates**: Pre-release checklist ensures reliability
 - **CI/CD integration**: Supports existing NPM and Docker publishing workflow
 
-To create a new release, [open a release setup issue](../../issues/new?template=release-setup.yml) with the target version and release details.
+To create a new release, [open a release setup issue](https://github.com/Anselmoo/mcp-ai-agent-guidelines/issues/new?template=release-setup.yml) with the target version and release details.
 
 ## Development
 
 Prerequisites:
+
 - Node.js 20+
 - npm 10+
 
@@ -530,6 +767,29 @@ npm run audit:fix        # Auto-fix vulnerabilities
 npm run audit:production # Audit production dependencies only
 ```
 
+### Automated Demo Regeneration 🔄
+
+Demo files are automatically regenerated when tools change via GitHub Actions:
+
+- **Trigger**: Any changes to `src/tools/**/*.ts` in a pull request
+- **Action**: Automatically runs `npm run test:demo` to regenerate demos
+- **Result**: Updated demo files are committed to the PR automatically
+
+**Benefits**:
+
+- ✅ Documentation always stays in sync with code
+- ✅ No manual steps to remember
+- ✅ Reviewers can see demo changes alongside code changes
+
+**Workflow**: [`.github/workflows/auto-regenerate-demos.yml`](./.github/workflows/auto-regenerate-demos.yml)
+
+**Manual regeneration** (if needed):
+
+```bash
+npm run build
+npm run test:demo
+```
+
 ### Git Hooks with Lefthook 🪝
 
 This project uses [Lefthook](https://github.com/evilmartians/lefthook) for fast, reliable Git hooks that enforce code quality and security standards.
@@ -537,6 +797,7 @@ This project uses [Lefthook](https://github.com/evilmartians/lefthook) for fast,
 **Mandatory for GitHub Copilot Agent**: All quality gates must pass before commits and pushes.
 
 Setup (automatic via `npm install`):
+
 ```bash
 npm run hooks:install    # Install lefthook git hooks
 npm run hooks:uninstall  # Remove lefthook git hooks
@@ -545,17 +806,20 @@ npx lefthook run pre-push    # Run pre-push checks manually
 ```
 
 **Pre-commit hooks** (fast, parallel execution):
+
 - 🔒 **Security**: Gitleaks secret detection
 - 🟨 **Code Quality**: Biome formatting & linting
 - 🔷 **Type Safety**: TypeScript type checking
 - 🧹 **Code Hygiene**: Trailing whitespace & EOF fixes
 
 **Pre-push hooks** (comprehensive validation):
+
 - 🔒 **Security Audit**: Dependency vulnerability scanning (moderate+ level)
 - 🧪 **Testing**: Full test suite (unit, integration, demo, MCP)
 - ⚡ **Quality**: Type checking + Biome validation
 
 **Why Lefthook?**
+
 - ⚡ **Fast**: Written in Go, parallel execution
 - 🔄 **Reliable**: Better error handling than pre-commit
 - 🤖 **CI Integration**: Mandatory quality gates for GitHub Copilot Agent
@@ -583,19 +847,19 @@ VS Code + Docker settings:
 
 ```json
 {
-	"mcp": {
-		"servers": {
-			"mcp-ai-agent-guidelines": {
-				"command": "docker",
-				"args": [
-					"run",
-					"--rm",
-					"-i",
-					"ghcr.io/anselmoo/mcp-ai-agent-guidelines:latest"
-				]
-			}
-		}
-	}
+  "mcp": {
+    "servers": {
+      "mcp-ai-agent-guidelines": {
+        "command": "docker",
+        "args": [
+          "run",
+          "--rm",
+          "-i",
+          "ghcr.io/anselmoo/mcp-ai-agent-guidelines:latest"
+        ]
+      }
+    }
+  }
 }
 ```
 
@@ -632,16 +896,52 @@ When vulnerabilities are detected:
 - Tools implementation: see `src/tools/` in this repo.
 - Generated examples: see `demos/` and links above.
 
+## Disclaimer
+
+This project references third-party tools, frameworks, APIs, and services for informational purposes. See [DISCLAIMER.md](./DISCLAIMER.md) for important information about external references, trademarks, and limitations of liability.
+
 ## Contributing
 
-Contributions welcome. Please see [CONTRIBUTING.md](./CONTRIBUTING.md). Keep changes typed, linted, and include tests when behavior changes.
+Contributions welcome! Please see [CONTRIBUTING.md](./CONTRIBUTING.md) for guidelines.
+
+### Developer Resources
+
+- **[Complete Documentation](./docs/README.md)** - Full documentation index
+- **[Clean Code Standards](./docs/tips/CLEAN_CODE_INITIATIVE.md)** - Quality requirements and scoring
+- **[Error Handling Patterns](./docs/tips/ERROR_HANDLING.md)** - Best practices for error handling
+- **[Architecture Guide](./docs/tips/BRIDGE_CONNECTORS.md)** - System architecture and integration patterns
+- **[Type System Organization](./docs/tips/TYPE_ORGANIZATION_EXTENSION.md)** - TypeScript conventions
+
+### Quality Standards
+
+- **TypeScript strict mode** - All code must pass type checking
+- **100% test coverage goal** - See [Clean Code Initiative](./docs/tips/CLEAN_CODE_INITIATIVE.md)
+- **Biome linting** - Code must pass `npm run quality`
+- **Git hooks** - Automated checks via Lefthook (see [lefthook.yml](./lefthook.yml))
+
+Keep changes typed, linted, and include tests when behavior changes.
 
 ## License
 
 MIT © Anselmoo — see [LICENSE](./LICENSE).
 
-## Acknowledgments
+## References & Acknowledgments
+
+For a comprehensive list of references, research papers, and detailed attribution, see **[docs/tips/REFERENCES.md](./docs/tips/REFERENCES.md)**.
+
+### Key Acknowledgments
+
+---
+
+- **Model Context Protocol team** for the specification
+- **Anthropic** for prompt caching research
+- **Mermaid community** for diagram tooling
+- **[@ruvnet/claude-flow](https://github.com/ruvnet/claude-flow)** - Inspired flow-based prompting features
+- **[@oraios/serena](https://github.com/oraios/serena)** - Influenced semantic analysis and mode switching
+- **All open-source contributors** whose work has shaped this project
+
+See [docs/tips/REFERENCES.md](./docs/tips/REFERENCES.md) for the complete list of research papers, projects, and inspirations.
 
-- Model Context Protocol team for the spec
-- Anthropic for prompt caching research
-- Mermaid community for diagram tooling
+<!-- FOOTER:START -->
+![Footer](docs/.frames-static/09-footer.svg)
+<!-- FOOTER:END -->