mcp-adr-analysis-server 2.1.9 → 2.1.11

package/dist/src/utils/research-orchestrator.js

@@ -0,0 +1,450 @@
+/**
+ * Research Orchestrator
+ *
+ * Coordinates multi-source research with cascading fallback:
+ * 1. Project Files (local, fast, free)
+ * 2. Knowledge Graph (in-memory, instant)
+ * 3. Environment Resources (live runtime data)
+ * 4. Web Search (external, last resort)
+ */
+import { promises as fs } from 'fs';
+import * as path from 'path';
+import { EnhancedLogger } from './enhanced-logging.js';
+// import { KnowledgeGraphManager } from './knowledge-graph-manager.js'; // TODO: Implement KG query
+import { findFiles } from './file-system.js';
+import { scanProjectStructure } from './actual-file-operations.js';
+import { searchWithRipgrep, isRipgrepAvailable } from './ripgrep-wrapper.js';
+import { TreeSitterAnalyzer } from './tree-sitter-analyzer.js';
+export class ResearchOrchestrator {
+    logger;
+    projectPath;
+    adrDirectory;
+    confidenceThreshold = 0.6;
+    constructor(projectPath, adrDirectory) {
+        this.logger = new EnhancedLogger();
+        this.projectPath = projectPath || process.cwd();
+        this.adrDirectory = adrDirectory || 'docs/adrs';
+    }
+    /**
+     * Answer a research question using cascading source hierarchy
+     */
+    async answerResearchQuestion(question) {
+        const startTime = Date.now();
+        this.logger.info(`Starting research for question: "${question}"`, 'ResearchOrchestrator');
+        const answer = {
+            question,
+            sources: [],
+            confidence: 0,
+            needsWebSearch: false,
+            metadata: {
+                duration: 0,
+                sourcesQueried: [],
+                filesAnalyzed: 0,
+            },
+        };
+        try {
+            // SOURCE 1: PROJECT FILES
+            this.logger.info('📁 Searching project files...', 'ResearchOrchestrator');
+            const projectData = await this.searchProjectFiles(question);
+            if (projectData.found) {
+                answer.sources.push({
+                    type: 'project_files',
+                    data: projectData,
+                    confidence: 0.9,
+                    timestamp: new Date().toISOString(),
+                });
+                answer.metadata.sourcesQueried.push('project_files');
+                answer.metadata.filesAnalyzed = projectData.files?.length || 0;
+                this.logger.info(`Found ${projectData.files?.length || 0} relevant project files`, 'ResearchOrchestrator');
+            }
+            // SOURCE 2: KNOWLEDGE GRAPH
+            this.logger.info('🧠 Querying knowledge graph...', 'ResearchOrchestrator');
+            const knowledgeData = await this.queryKnowledgeGraph(question);
+            if (knowledgeData.found) {
+                answer.sources.push({
+                    type: 'knowledge_graph',
+                    data: knowledgeData,
+                    confidence: 0.85,
+                    timestamp: new Date().toISOString(),
+                });
+                answer.metadata.sourcesQueried.push('knowledge_graph');
+                this.logger.info(`Found ${knowledgeData.nodes?.length || 0} relevant knowledge graph nodes`, 'ResearchOrchestrator');
+            }
+            // SOURCE 3: ENVIRONMENT RESOURCES
+            this.logger.info('🔧 Checking environment resources...', 'ResearchOrchestrator');
+            const envData = await this.queryEnvironment(question);
+            if (envData.found) {
+                answer.sources.push({
+                    type: 'environment',
+                    data: envData,
+                    confidence: 0.95,
+                    timestamp: new Date().toISOString(),
+                });
+                answer.metadata.sourcesQueried.push('environment');
+                this.logger.info(`Found environment data from ${envData.capabilities?.length || 0} capabilities`, 'ResearchOrchestrator');
+            }
+            // Calculate overall confidence
+            answer.confidence = this.calculateConfidence(answer.sources);
+            this.logger.info(`Research confidence: ${(answer.confidence * 100).toFixed(1)}%`, 'ResearchOrchestrator');
+            // SOURCE 4: WEB SEARCH (fallback)
+            if (answer.confidence < this.confidenceThreshold) {
+                this.logger.warn(`Confidence below threshold (${this.confidenceThreshold}), web search recommended`, 'ResearchOrchestrator');
+                answer.needsWebSearch = true;
+            }
+            // Generate synthesized answer
+            answer.answer = this.synthesizeAnswer(answer);
+            answer.metadata.duration = Date.now() - startTime;
+            this.logger.info(`Research completed in ${answer.metadata.duration}ms`, 'ResearchOrchestrator', { confidence: answer.confidence, sources: answer.metadata.sourcesQueried });
+            return answer;
+        }
+        catch (_error) {
+            this.logger.error('Research orchestration failed', 'ResearchOrchestrator', _error);
+            throw _error;
+        }
+    }
+    /**
+     * SOURCE 1: Search project files (Enhanced with tree-sitter, ripgrep, and actual file ops)
+     */
+    async searchProjectFiles(question) {
+        const results = {
+            found: false,
+            files: [],
+            content: {},
+            relevance: {},
+            parseAnalysis: {},
+        };
+        try {
+            const questionLower = question.toLowerCase();
+            const keywords = this.extractKeywords(question);
+            this.logger.info(`Searching project files with keywords: ${keywords.join(', ')}`, 'ResearchOrchestrator');
+            // PHASE 1: Use actual-file-operations for structured project scan
+            const projectStructure = await scanProjectStructure(this.projectPath, {
+                readContent: false,
+                maxFileSize: 100000,
+                includeHidden: false,
+            });
+            // PHASE 2: Match relevant file categories based on question intent
+            const relevantFiles = [];
+            if (questionLower.match(/docker|container/i)) {
+                relevantFiles.push(...projectStructure.dockerFiles.map(f => f.path));
+            }
+            if (questionLower.match(/kubernetes|k8s|pod|deployment/i)) {
+                relevantFiles.push(...projectStructure.kubernetesFiles.map(f => f.path));
+            }
+            if (questionLower.match(/dependency|package|library/i)) {
+                relevantFiles.push(...projectStructure.packageFiles.map(f => f.path));
+            }
+            if (questionLower.match(/config|configuration|environment|env/i)) {
+                relevantFiles.push(...projectStructure.configFiles.map(f => f.path));
+                relevantFiles.push(...projectStructure.environmentFiles.map(f => f.path));
+            }
+            if (questionLower.match(/build|ci|cd|pipeline/i)) {
+                relevantFiles.push(...projectStructure.buildFiles.map(f => f.path));
+                relevantFiles.push(...projectStructure.ciFiles.map(f => f.path));
+            }
+            if (questionLower.match(/test|testing|spec/i)) {
+                // Use fast-glob to find test files
+                const testResults = await findFiles(this.projectPath, [
+                    '**/*.test.ts',
+                    '**/*.spec.ts',
+                    '**/*.test.js',
+                    '**/*.spec.js',
+                    '**/tests/**',
+                    '**/test/**',
+                ]);
+                relevantFiles.push(...testResults.files.map(f => f.path));
+            }
+            // PHASE 3: Always include ADRs
+            const adrPath = path.join(this.projectPath, this.adrDirectory);
+            try {
+                const adrResults = await findFiles(adrPath, ['**/*.md']);
+                relevantFiles.push(...adrResults.files.map(f => f.path));
+            }
+            catch {
+                this.logger.warn(`ADR directory not found: ${adrPath}`, 'ResearchOrchestrator');
+            }
+            // PHASE 4: Use ripgrep for keyword search (if available)
+            const hasRipgrep = await isRipgrepAvailable();
+            if (hasRipgrep && keywords.length > 0) {
+                this.logger.info('Using ripgrep for fast keyword search', 'ResearchOrchestrator');
+                try {
+                    const ripgrepFiles = await searchWithRipgrep({
+                        pattern: keywords.join('|'),
+                        path: this.projectPath,
+                        caseInsensitive: true,
+                    });
+                    relevantFiles.push(...ripgrepFiles);
+                }
+                catch {
+                    this.logger.warn('Ripgrep search failed, continuing with other methods', 'ResearchOrchestrator');
+                }
+            }
+            // Remove duplicates
+            results.files = [...new Set(relevantFiles)];
+            if (results.files.length === 0) {
+                this.logger.info('No relevant files found', 'ResearchOrchestrator');
+                return results;
+            }
+            results.found = true;
+            // PHASE 5: Read and analyze files with tree-sitter
+            const analyzer = new TreeSitterAnalyzer();
+            for (const file of results.files.slice(0, 50)) {
+                // Limit to 50 files for performance
+                try {
+                    const content = await fs.readFile(file, 'utf-8');
+                    // Calculate text-based relevance
+                    const relevance = this.calculateRelevance(content, question);
+                    if (relevance > 0.2) {
+                        // Lower threshold for tree-sitter analysis
+                        results.content[file] = content;
+                        results.relevance[file] = relevance;
+                        // PHASE 6: Use tree-sitter for AST-based analysis
+                        if (this.shouldParse(file)) {
+                            try {
+                                const analysis = await analyzer.analyzeFile(file, content);
+                                // Enhance relevance based on AST analysis
+                                let astRelevance = relevance;
+                                // Check for infrastructure references
+                                if (analysis.infraStructure && analysis.infraStructure.length > 0) {
+                                    // Extract provider types and resource names from infrastructure analysis
+                                    const infraProviders = analysis.infraStructure.map(i => i.provider);
+                                    const infraResources = analysis.infraStructure.map(i => i.name);
+                                    // Check if question keywords match infrastructure providers or resources
+                                    const matchingProviders = keywords.filter(k => infraProviders.some(p => p.toLowerCase().includes(k.toLowerCase())));
+                                    const matchingResources = keywords.filter(k => infraResources.some(r => r.toLowerCase().includes(k.toLowerCase())));
+                                    const totalMatches = matchingProviders.length + matchingResources.length;
+                                    if (totalMatches > 0) {
+                                        astRelevance += 0.2 * Math.min(totalMatches, 3); // Cap bonus at 0.6
+                                    }
+                                }
+                                // Check for imports/dependencies
+                                if (analysis.imports && keywords.some(k => k.match(/import|require|dependency/i))) {
+                                    astRelevance += 0.1;
+                                }
+                                // Update relevance
+                                results.relevance[file] = Math.min(astRelevance, 1.0);
+                                results.parseAnalysis[file] = {
+                                    language: analysis.language,
+                                    hasInfrastructure: !!analysis.infraStructure,
+                                    functionCount: analysis.functions?.length || 0,
+                                    importCount: analysis.imports?.length || 0,
+                                };
+                                this.logger.debug(`Tree-sitter analysis for ${file}: ${analysis.language}, relevance: ${results.relevance[file]}`, 'ResearchOrchestrator');
+                            }
+                            catch {
+                                this.logger.debug(`Tree-sitter parsing failed for ${file}, using text-based analysis`, 'ResearchOrchestrator');
+                            }
+                        }
+                    }
+                }
+                catch {
+                    this.logger.warn(`Failed to read file: ${file}`, 'ResearchOrchestrator');
+                }
+            }
+            // Sort files by relevance
+            results.files = results.files
+                .filter(f => (results.relevance[f] ?? 0) > 0.2)
+                .sort((a, b) => (results.relevance[b] || 0) - (results.relevance[a] || 0))
+                .slice(0, 20); // Top 20 most relevant files
+            this.logger.info(`Found ${results.files.length} relevant files (analyzed with tree-sitter)`, 'ResearchOrchestrator');
+            return results;
+        }
+        catch (error) {
+            this.logger.error('Project file search failed', 'ResearchOrchestrator', error);
+            return results;
+        }
+    }
+    /**
+     * Check if file should be parsed with tree-sitter
+     */
+    shouldParse(filePath) {
+        const parsableExtensions = [
+            '.ts',
+            '.tsx',
+            '.js',
+            '.jsx',
+            '.py',
+            '.yaml',
+            '.yml',
+            '.json',
+            '.sh',
+            '.bash',
+            '.tf',
+            '.hcl',
+        ];
+        return parsableExtensions.some(ext => filePath.endsWith(ext));
+    }
+    /**
+     * SOURCE 2: Query knowledge graph
+     */
+    async queryKnowledgeGraph(_question) {
+        try {
+            // TODO: Implement actual knowledge graph query using KnowledgeGraphManager
+            // const kgManager = new KnowledgeGraphManager();
+            // const keywords = this.extractKeywords(question);
+            // Query knowledge graph (placeholder - implement based on your KG structure)
+            const results = {
+                found: false,
+                nodes: [],
+                relationships: [],
+            };
+            // TODO: Implement actual knowledge graph query
+            // For now, return empty results
+            return results;
+        }
+        catch (_error) {
+            this.logger.error('Knowledge graph query failed', 'ResearchOrchestrator', _error);
+            return { found: false, nodes: [], relationships: [] };
+        }
+    }
+    /**
+     * SOURCE 3: Query environment resources
+     */
+    async queryEnvironment(question) {
+        try {
+            // Import dynamically to avoid circular dependencies
+            const { EnvironmentCapabilityRegistry } = await import('./environment-capability-registry.js');
+            const envRegistry = new EnvironmentCapabilityRegistry(this.projectPath);
+            // Discover available capabilities
+            await envRegistry.discoverCapabilities();
+            // Query relevant capabilities
+            const results = await envRegistry.query(question);
+            return {
+                found: results.length > 0,
+                capabilities: envRegistry.listCapabilities(),
+                data: results,
+            };
+        }
+        catch {
+            this.logger.warn('Environment query failed (capability registry not available)', 'ResearchOrchestrator');
+            return { found: false, capabilities: [], data: [] };
+        }
+    }
+    /**
+     * Calculate confidence score from multiple sources
+     */
+    calculateConfidence(sources) {
+        if (sources.length === 0)
+            return 0;
+        // Weighted confidence calculation
+        const totalConfidence = sources.reduce((sum, s) => sum + s.confidence, 0);
+        const avgConfidence = totalConfidence / sources.length;
+        // Bonus for multiple sources
+        const sourceBonus = Math.min(sources.length * 0.05, 0.15);
+        return Math.min(avgConfidence + sourceBonus, 1.0);
+    }
+    /**
+     * Synthesize answer from multiple sources
+     */
+    synthesizeAnswer(research) {
+        if (research.sources.length === 0) {
+            return 'No relevant information found in project files, knowledge graph, or environment.';
+        }
+        const parts = [];
+        // Add project file findings
+        const projectFiles = research.sources.find(s => s.type === 'project_files');
+        if (projectFiles && projectFiles.data.files?.length > 0) {
+            parts.push(`Found ${projectFiles.data.files.length} relevant project file(s).`);
+        }
+        // Add knowledge graph findings
+        const knowledgeGraph = research.sources.find(s => s.type === 'knowledge_graph');
+        if (knowledgeGraph && knowledgeGraph.data.nodes?.length > 0) {
+            parts.push(`Identified ${knowledgeGraph.data.nodes.length} related architectural decision(s).`);
+        }
+        // Add environment findings
+        const environment = research.sources.find(s => s.type === 'environment');
+        if (environment && environment.data.capabilities?.length > 0) {
+            parts.push(`Detected ${environment.data.capabilities.length} environment capability(ies): ${environment.data.capabilities.join(', ')}.`);
+        }
+        if (research.needsWebSearch) {
+            parts.push('Additional web research recommended for comprehensive answer.');
+        }
+        return parts.join(' ');
+    }
+    /**
+    /**
+     * Calculate relevance score for content
+     */
+    calculateRelevance(content, question) {
+        const contentLower = content.toLowerCase();
+        const questionLower = question.toLowerCase();
+        // Extract keywords from question
+        const keywords = this.extractKeywords(question);
+        let score = 0;
+        for (const keyword of keywords) {
+            if (contentLower.includes(keyword.toLowerCase())) {
+                score += 0.2;
+            }
+        }
+        // Bonus for exact question phrases
+        const questionWords = questionLower.split(/\s+/).filter(w => w.length > 3);
+        for (const word of questionWords) {
+            if (contentLower.includes(word)) {
+                score += 0.1;
+            }
+        }
+        return Math.min(score, 1.0);
+    }
+    /**
+     * Extract keywords from question
+     */
+    extractKeywords(question) {
+        // Remove common words
+        const stopWords = new Set([
+            'the',
+            'is',
+            'are',
+            'was',
+            'were',
+            'what',
+            'when',
+            'where',
+            'why',
+            'how',
+            'which',
+            'who',
+            'a',
+            'an',
+            'and',
+            'or',
+            'but',
+            'in',
+            'on',
+            'at',
+            'to',
+            'for',
+            'with',
+            'about',
+            'as',
+            'by',
+            'from',
+            'of',
+            'can',
+            'could',
+            'should',
+            'would',
+            'do',
+            'does',
+            'did',
+            'have',
+            'has',
+            'had',
+            'we',
+            'our',
+            'us',
+        ]);
+        const words = question
+            .toLowerCase()
+            .replace(/[^\w\s-]/g, ' ')
+            .split(/\s+/)
+            .filter(w => w.length > 2 && !stopWords.has(w));
+        return [...new Set(words)];
+    }
+    /**
+     * Set confidence threshold for web search fallback
+     */
+    setConfidenceThreshold(threshold) {
+        this.confidenceThreshold = Math.max(0, Math.min(1, threshold));
+    }
+}
+//# sourceMappingURL=research-orchestrator.js.map

package/dist/src/utils/research-orchestrator.js.map

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package/dist/src/utils/tree-sitter-analyzer.d.ts.map

@@ -1 +1 @@
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package/dist/src/utils/tree-sitter-analyzer.js

@@ -30,6 +30,11 @@ export class TreeSitterAnalyzer {
      * Initialize tree-sitter parsers with graceful fallback
      */
     async initializeParsers() {
+        // Skip tree-sitter initialization in test environment
+        if (process.env['NODE_ENV'] === 'test' || process.env['JEST_WORKER_ID'] !== undefined) {
+            this.initialized = false;
+            return;
+        }
         try {
             // Initialize core parsers for enterprise stack
             await this.loadParser('typescript', 'tree-sitter-typescript');
@@ -48,6 +53,10 @@ export class TreeSitterAnalyzer {
         }
     }
     async loadParser(language, packageName) {
+        // Skip loading parsers in test environment
+        if (process.env['NODE_ENV'] === 'test' || process.env['JEST_WORKER_ID'] !== undefined) {
+            return;
+        }
         try {
             const TreeSitterModule = await import('tree-sitter');
             const TreeSitter = TreeSitterModule.default || TreeSitterModule;
@@ -69,7 +78,10 @@ export class TreeSitterAnalyzer {
             this.parsers.set(language, parser);
         }
         catch (error) {
-            console.warn(`Failed to load ${language} parser:`, error);
+            // Silently skip parser loading errors in test environment
+            if (process.env['NODE_ENV'] !== 'test' && process.env['JEST_WORKER_ID'] === undefined) {
+                console.warn(`Failed to load ${language} parser:`, error);
+            }
         }
     }
     /**
@@ -464,13 +476,44 @@ export class TreeSitterAnalyzer {
         };
         // Basic regex-based secret detection
         const secretPatterns = [
-            { pattern: /(?:api[_-]?key|apikey)[:=]\s*['""]([^'""]+)['""]?/i, type: 'api_key' },
-            { pattern: /(?:password|pwd|pass)[:=]\s*['""]([^'""]+)['""]?/i, type: 'password' },
-            { pattern: /(?:token|auth)[:=]\s*['""]([^'""]+)['""]?/i, type: 'token' },
             {
-                pattern: /(?:secret|private[_-]?key)[:=]\s*['""]([^'""]+)['""]?/i,
+                pattern: /["']?(?:api[_-]?key|apikey)["']?\s*[:=\s]\s*["']([^"']+)["']/i,
+                type: 'api_key',
+            },
+            {
+                pattern: /["']?(?:password|pwd|pass)["']?\s*[:=\s]\s*["']([^"']+)["']/i,
+                type: 'password',
+            },
+            { pattern: /["']?(?:token|auth)["']?\s*[:=\s]\s*["']([^"']+)["']/i, type: 'token' },
+            {
+                pattern: /["']?(?:secret|private[_-]?key)["']?\s*[:=\s]\s*["']([^"']+)["']/i,
+                type: 'private_key',
+            },
+            // AWS Access Key - specific pattern (environment variable style)
+            {
+                pattern: /AWS_ACCESS_KEY_ID\s*[:=]\s*["']?((?:AKIA|ASIA|AGPA|AIDA|AROA|AIPA|ANPA|ANVA)[A-Z0-9]{16})["']?/i,
+                type: 'api_key',
+            },
+            // AWS Access Key - generic pattern (any variable name with AWS key format)
+            {
+                pattern: /["']?((?:AKIA|ASIA|AGPA|AIDA|AROA|AIPA|ANPA|ANVA)[A-Z0-9]{16})["']?/,
+                type: 'api_key',
+            },
+            // AWS Secret Key - specific pattern (40 chars)
+            {
+                pattern: /AWS_SECRET_ACCESS_KEY\s*[:=]\s*["']?([A-Za-z0-9+/]{40})["']?/i,
+                type: 'private_key',
+            },
+            // Generic AWS secret assignment
+            {
+                pattern: /(?:aws_secret|secret_key)\s*[:=]\s*["']([A-Za-z0-9+/]{40})["']/i,
                 type: 'private_key',
             },
+            // YAML/Dockerfile environment variables with hardcoded values
+            {
+                pattern: /(?:value|ENV\s+\w+)\s*[:=]?\s*["']([a-zA-Z0-9_-]{10,})["']/i,
+                type: 'credential',
+            },
         ];
         lines.forEach((line, index) => {
             secretPatterns.forEach(({ pattern, type }) => {
@@ -485,6 +528,16 @@ export class TreeSitterAnalyzer {
                     });
                 }
             });
+            // Detect privilege escalation in Dockerfile
+            if (language === 'dockerfile' && /USER\s+root/i.test(line)) {
+                result.securityIssues.push({
+                    type: 'privilege_escalation',
+                    severity: 'high',
+                    location: { line: index + 1, column: 0 },
+                    message: 'Running as root user',
+                    suggestion: 'Use a non-root user',
+                });
+            }
         });
         result.hasSecrets = result.secrets.length > 0;
         return result;
@@ -558,15 +611,34 @@ export class TreeSitterAnalyzer {
         return 'credential';
     }
     detectSecretPattern(text) {
-        // AWS Access Key
-        if (/^AKIA[0-9A-Z]{16}$/.test(text))
-            return 'api_key';
-        // Generic API key patterns
-        if (/^[A-Za-z0-9]{32,}$/.test(text) && text.length >= 32)
+        // AWS Access Key (various types)
+        if (/^(A3T[A-Z0-9]|AKIA|AGPA|AIDA|AROA|AIPA|ANPA|ANVA|ASIA)[A-Z0-9]{16}$/.test(text)) {
             return 'api_key';
+        }
+        // AWS Secret Key (40 characters, base64-like) - using boundary detection
+        if (/^[A-Za-z0-9+/]{40}$/.test(text)) {
+            return 'private_key';
+        }
+        // AWS Session Token (longer, base64-like)
+        if (/^[A-Za-z0-9+/=]{100,}$/.test(text)) {
+            return 'token';
+        }
         // JWT Token
-        if (/^eyJ[A-Za-z0-9-_]+\.[A-Za-z0-9-_]+\.[A-Za-z0-9-_.+/]*$/.test(text))
+        if (/^eyJ[A-Za-z0-9-_]+\.[A-Za-z0-9-_]+\.[A-Za-z0-9-_.+/]*$/.test(text)) {
+            return 'token';
+        }
+        // GitHub Personal Access Token
+        if (/^ghp_[A-Za-z0-9]{36}$/.test(text)) {
+            return 'token';
+        }
+        // Slack tokens
+        if (/^xox[baprs]-[0-9]{12}-[0-9]{12}-[a-zA-Z0-9]{24}$/.test(text)) {
             return 'token';
+        }
+        // Generic API key patterns (32+ alphanumeric)
+        if (/^[A-Za-z0-9]{32,64}$/.test(text) && text.length >= 32) {
+            return 'api_key';
+        }
         return null;
     }
     isAnsibleFile(filename, content) {