matterviz 0.3.5 → 0.3.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (855) hide show
  1. package/.vscode/launch.json +13 -0
  2. package/.vscodeignore +7 -0
  3. package/dist/assets/STLExporter-BpTH3YHE.js +8 -0
  4. package/dist/assets/browser-DdDecX_W.js +1 -0
  5. package/dist/assets/export-qgn-H9y6.js +2 -0
  6. package/dist/assets/main-DiKYzti2.css +1 -0
  7. package/dist/assets/moyo_wasm_bg-0ocwg7xY.wasm +0 -0
  8. package/dist/extension.js +31293 -0
  9. package/dist/src/lib/FilePicker.svelte +360 -0
  10. package/dist/src/lib/MillerIndexInput.svelte +66 -0
  11. package/dist/src/lib/api/mp.ts +26 -0
  12. package/dist/src/lib/api/optimade.ts +204 -0
  13. package/dist/src/lib/brillouin/BrillouinZone.svelte +549 -0
  14. package/dist/src/lib/brillouin/BrillouinZoneControls.svelte +144 -0
  15. package/dist/src/lib/brillouin/BrillouinZoneExportPane.svelte +146 -0
  16. package/dist/src/lib/brillouin/BrillouinZoneInfoPane.svelte +146 -0
  17. package/dist/src/lib/brillouin/BrillouinZoneScene.svelte +476 -0
  18. package/dist/src/lib/brillouin/BrillouinZoneTooltip.svelte +92 -0
  19. package/dist/src/lib/brillouin/compute.ts +529 -0
  20. package/dist/src/lib/brillouin/index.ts +8 -0
  21. package/dist/src/lib/brillouin/types.ts +51 -0
  22. package/dist/src/lib/chempot-diagram/ChemPotDiagram.svelte +327 -0
  23. package/dist/src/lib/chempot-diagram/ChemPotDiagram2D.svelte +846 -0
  24. package/dist/src/lib/chempot-diagram/ChemPotDiagram3D.svelte +3193 -0
  25. package/dist/src/lib/chempot-diagram/async-compute.svelte.ts +94 -0
  26. package/dist/src/lib/chempot-diagram/chempot-worker.ts +11 -0
  27. package/dist/src/lib/chempot-diagram/color.ts +42 -0
  28. package/dist/src/lib/chempot-diagram/compute.ts +1014 -0
  29. package/dist/src/lib/chempot-diagram/index.ts +6 -0
  30. package/dist/src/lib/chempot-diagram/pointer.ts +56 -0
  31. package/dist/src/lib/chempot-diagram/temperature.ts +77 -0
  32. package/dist/src/lib/chempot-diagram/types.ts +130 -0
  33. package/dist/src/lib/colors/index.ts +249 -0
  34. package/dist/src/lib/composition/BarChart.svelte +297 -0
  35. package/dist/src/lib/composition/BubbleChart.svelte +218 -0
  36. package/dist/src/lib/composition/Composition.svelte +165 -0
  37. package/dist/src/lib/composition/Formula.svelte +268 -0
  38. package/dist/src/lib/composition/FormulaFilter.svelte +1257 -0
  39. package/dist/src/lib/composition/PieChart.svelte +323 -0
  40. package/dist/src/lib/composition/format.ts +155 -0
  41. package/dist/src/lib/composition/index.ts +37 -0
  42. package/dist/src/lib/composition/parse.ts +605 -0
  43. package/dist/src/lib/constants.ts +134 -0
  44. package/dist/src/lib/controls.ts +42 -0
  45. package/dist/src/lib/convex-hull/ConvexHull.svelte +157 -0
  46. package/dist/src/lib/convex-hull/ConvexHull2D.svelte +825 -0
  47. package/dist/src/lib/convex-hull/ConvexHull3D.svelte +1801 -0
  48. package/dist/src/lib/convex-hull/ConvexHull4D.svelte +1398 -0
  49. package/dist/src/lib/convex-hull/ConvexHullControls.svelte +535 -0
  50. package/dist/src/lib/convex-hull/ConvexHullInfoPane.svelte +125 -0
  51. package/dist/src/lib/convex-hull/ConvexHullStats.svelte +929 -0
  52. package/dist/src/lib/convex-hull/ConvexHullTooltip.svelte +131 -0
  53. package/dist/src/lib/convex-hull/GasPressureControls.svelte +247 -0
  54. package/dist/src/lib/convex-hull/StructurePopup.svelte +151 -0
  55. package/dist/src/lib/convex-hull/TemperatureSlider.svelte +140 -0
  56. package/dist/src/lib/convex-hull/barycentric-coords.ts +246 -0
  57. package/dist/src/lib/convex-hull/demo-temperature.ts +63 -0
  58. package/dist/src/lib/convex-hull/gas-thermodynamics.ts +405 -0
  59. package/dist/src/lib/convex-hull/helpers.ts +932 -0
  60. package/dist/src/lib/convex-hull/index.ts +202 -0
  61. package/dist/src/lib/convex-hull/thermodynamics.ts +2192 -0
  62. package/dist/src/lib/convex-hull/types.ts +267 -0
  63. package/dist/src/lib/coordination/CoordinationBarPlot.svelte +311 -0
  64. package/dist/src/lib/coordination/calc-coordination.ts +93 -0
  65. package/dist/src/lib/coordination/index.ts +9 -0
  66. package/dist/src/lib/effects.svelte.ts +48 -0
  67. package/dist/src/lib/element/BohrAtom.svelte +147 -0
  68. package/dist/src/lib/element/ElementHeading.svelte +26 -0
  69. package/dist/src/lib/element/ElementPhoto.svelte +57 -0
  70. package/dist/src/lib/element/ElementStats.svelte +80 -0
  71. package/dist/src/lib/element/ElementTile.svelte +484 -0
  72. package/dist/src/lib/element/data.json.gz.d.ts +4 -0
  73. package/dist/src/lib/element/data.ts +14 -0
  74. package/dist/src/lib/element/index.ts +8 -0
  75. package/dist/src/lib/element/types.ts +62 -0
  76. package/dist/src/lib/feedback/ClickFeedback.svelte +58 -0
  77. package/dist/src/lib/feedback/DragOverlay.svelte +42 -0
  78. package/dist/src/lib/feedback/index.ts +4 -0
  79. package/dist/src/lib/fermi-surface/FermiSlice.svelte +189 -0
  80. package/dist/src/lib/fermi-surface/FermiSurface.svelte +600 -0
  81. package/dist/src/lib/fermi-surface/FermiSurfaceControls.svelte +448 -0
  82. package/dist/src/lib/fermi-surface/FermiSurfaceScene.svelte +794 -0
  83. package/dist/src/lib/fermi-surface/FermiSurfaceTooltip.svelte +111 -0
  84. package/dist/src/lib/fermi-surface/compute.ts +728 -0
  85. package/dist/src/lib/fermi-surface/constants.ts +32 -0
  86. package/dist/src/lib/fermi-surface/export.ts +64 -0
  87. package/dist/src/lib/fermi-surface/index.ts +14 -0
  88. package/dist/src/lib/fermi-surface/marching-cubes.ts +3 -0
  89. package/dist/src/lib/fermi-surface/parse.ts +574 -0
  90. package/dist/src/lib/fermi-surface/symmetry.ts +56 -0
  91. package/dist/src/lib/fermi-surface/types.ts +159 -0
  92. package/dist/src/lib/heatmap-matrix/HeatmapMatrix.svelte +1545 -0
  93. package/dist/src/lib/heatmap-matrix/HeatmapMatrixControls.svelte +225 -0
  94. package/dist/src/lib/heatmap-matrix/index.ts +167 -0
  95. package/dist/src/lib/heatmap-matrix/shared.ts +7 -0
  96. package/dist/src/lib/icons.ts +650 -0
  97. package/dist/src/lib/index.ts +61 -0
  98. package/dist/src/lib/io/decompress.ts +92 -0
  99. package/dist/src/lib/io/export.ts +385 -0
  100. package/dist/src/lib/io/fetch.ts +46 -0
  101. package/dist/src/lib/io/file-drop.ts +51 -0
  102. package/dist/src/lib/io/index.ts +7 -0
  103. package/dist/src/lib/io/is-binary.ts +24 -0
  104. package/dist/src/lib/io/types.ts +8 -0
  105. package/dist/src/lib/io/url-drop.ts +141 -0
  106. package/dist/src/lib/isosurface/Isosurface.svelte +285 -0
  107. package/dist/src/lib/isosurface/IsosurfaceControls.svelte +277 -0
  108. package/dist/src/lib/isosurface/index.ts +7 -0
  109. package/dist/src/lib/isosurface/parse.ts +656 -0
  110. package/dist/src/lib/isosurface/slice.ts +175 -0
  111. package/dist/src/lib/isosurface/types.ts +309 -0
  112. package/dist/src/lib/labels.ts +320 -0
  113. package/dist/src/lib/layout/FullscreenToggle.svelte +50 -0
  114. package/dist/src/lib/layout/InfoCard.svelte +120 -0
  115. package/dist/src/lib/layout/InfoTag.svelte +185 -0
  116. package/dist/src/lib/layout/PropertyFilter.svelte +246 -0
  117. package/dist/src/lib/layout/SettingsSection.svelte +148 -0
  118. package/dist/src/lib/layout/SubpageGrid.svelte +82 -0
  119. package/dist/src/lib/layout/fullscreen.ts +65 -0
  120. package/dist/src/lib/layout/index.ts +11 -0
  121. package/dist/src/lib/layout/json-tree/JsonNode.svelte +548 -0
  122. package/dist/src/lib/layout/json-tree/JsonTree.svelte +1230 -0
  123. package/dist/src/lib/layout/json-tree/JsonValue.svelte +334 -0
  124. package/dist/src/lib/layout/json-tree/index.ts +3 -0
  125. package/dist/src/lib/layout/json-tree/types.ts +126 -0
  126. package/dist/src/lib/layout/json-tree/utils.ts +682 -0
  127. package/dist/src/lib/marching-cubes.ts +614 -0
  128. package/dist/src/lib/math.ts +1081 -0
  129. package/dist/src/lib/overlays/ContextMenu.svelte +162 -0
  130. package/dist/src/lib/overlays/CopyButton.svelte +45 -0
  131. package/dist/src/lib/overlays/DragControlTab.svelte +98 -0
  132. package/dist/src/lib/overlays/DraggablePane.svelte +487 -0
  133. package/dist/src/lib/overlays/InfoPaneCards.svelte +149 -0
  134. package/dist/src/lib/overlays/index.ts +3 -0
  135. package/dist/src/lib/periodic-table/PeriodicTable.svelte +469 -0
  136. package/dist/src/lib/periodic-table/PeriodicTableControls.svelte +557 -0
  137. package/dist/src/lib/periodic-table/PropertySelect.svelte +37 -0
  138. package/dist/src/lib/periodic-table/index.ts +12 -0
  139. package/dist/src/lib/phase-diagram/IsobaricBinaryPhaseDiagram.svelte +1086 -0
  140. package/dist/src/lib/phase-diagram/PhaseDiagramControls.svelte +444 -0
  141. package/dist/src/lib/phase-diagram/PhaseDiagramEditorPane.svelte +126 -0
  142. package/dist/src/lib/phase-diagram/PhaseDiagramExportPane.svelte +184 -0
  143. package/dist/src/lib/phase-diagram/PhaseDiagramTooltip.svelte +391 -0
  144. package/dist/src/lib/phase-diagram/TdbInfoPanel.svelte +203 -0
  145. package/dist/src/lib/phase-diagram/build-diagram.ts +186 -0
  146. package/dist/src/lib/phase-diagram/colors.ts +58 -0
  147. package/dist/src/lib/phase-diagram/diagram-input.ts +40 -0
  148. package/dist/src/lib/phase-diagram/index.ts +13 -0
  149. package/dist/src/lib/phase-diagram/parse.ts +348 -0
  150. package/dist/src/lib/phase-diagram/svg-to-diagram.ts +1023 -0
  151. package/dist/src/lib/phase-diagram/types.ts +144 -0
  152. package/dist/src/lib/phase-diagram/utils.ts +775 -0
  153. package/dist/src/lib/plot/AxisLabel.svelte +51 -0
  154. package/dist/src/lib/plot/BarPlot.svelte +2113 -0
  155. package/dist/src/lib/plot/BarPlotControls.svelte +66 -0
  156. package/dist/src/lib/plot/BinnedScatterPlot.svelte +1114 -0
  157. package/dist/src/lib/plot/ColorBar.svelte +721 -0
  158. package/dist/src/lib/plot/ColorScaleSelect.svelte +54 -0
  159. package/dist/src/lib/plot/ElementScatter.svelte +63 -0
  160. package/dist/src/lib/plot/FillArea.svelte +223 -0
  161. package/dist/src/lib/plot/Histogram.svelte +1558 -0
  162. package/dist/src/lib/plot/HistogramControls.svelte +212 -0
  163. package/dist/src/lib/plot/InteractiveAxisLabel.svelte +96 -0
  164. package/dist/src/lib/plot/Line.svelte +84 -0
  165. package/dist/src/lib/plot/PlotAxis.svelte +169 -0
  166. package/dist/src/lib/plot/PlotControls.svelte +537 -0
  167. package/dist/src/lib/plot/PlotLegend.svelte +569 -0
  168. package/dist/src/lib/plot/PlotTooltip.svelte +67 -0
  169. package/dist/src/lib/plot/PortalSelect.svelte +253 -0
  170. package/dist/src/lib/plot/ReferenceLine3D.svelte +156 -0
  171. package/dist/src/lib/plot/ReferencePlane.svelte +175 -0
  172. package/dist/src/lib/plot/ScatterPlot.svelte +2778 -0
  173. package/dist/src/lib/plot/ScatterPlot3D.svelte +529 -0
  174. package/dist/src/lib/plot/ScatterPlot3DControls.svelte +437 -0
  175. package/dist/src/lib/plot/ScatterPlot3DScene.svelte +912 -0
  176. package/dist/src/lib/plot/ScatterPlotControls.svelte +306 -0
  177. package/dist/src/lib/plot/ScatterPoint.svelte +182 -0
  178. package/dist/src/lib/plot/SpacegroupBarPlot.svelte +293 -0
  179. package/dist/src/lib/plot/Surface3D.svelte +197 -0
  180. package/dist/src/lib/plot/ZeroLines.svelte +97 -0
  181. package/dist/src/lib/plot/ZoomRect.svelte +23 -0
  182. package/dist/src/lib/plot/adaptive-density.ts +316 -0
  183. package/dist/src/lib/plot/auto-place.ts +184 -0
  184. package/dist/src/lib/plot/axis-utils.ts +122 -0
  185. package/dist/src/lib/plot/binned-scatter-types.ts +83 -0
  186. package/dist/src/lib/plot/data-cleaning.ts +1069 -0
  187. package/dist/src/lib/plot/data-transform.ts +69 -0
  188. package/dist/src/lib/plot/defaults.ts +9 -0
  189. package/dist/src/lib/plot/fill-utils.ts +494 -0
  190. package/dist/src/lib/plot/hover-lock.svelte.ts +60 -0
  191. package/dist/src/lib/plot/index.ts +53 -0
  192. package/dist/src/lib/plot/interactions.ts +119 -0
  193. package/dist/src/lib/plot/layout.ts +425 -0
  194. package/dist/src/lib/plot/reference-line.ts +426 -0
  195. package/dist/src/lib/plot/scales.ts +654 -0
  196. package/dist/src/lib/plot/svg.ts +23 -0
  197. package/dist/src/lib/plot/types.ts +1144 -0
  198. package/dist/src/lib/plot/utils/label-placement.ts +541 -0
  199. package/dist/src/lib/plot/utils/series-visibility.ts +140 -0
  200. package/dist/src/lib/plot/utils.ts +11 -0
  201. package/dist/src/lib/rdf/RdfPlot.svelte +247 -0
  202. package/dist/src/lib/rdf/calc-rdf.ts +167 -0
  203. package/dist/src/lib/rdf/index.ts +27 -0
  204. package/dist/src/lib/sanitize.ts +126 -0
  205. package/dist/src/lib/settings.ts +1479 -0
  206. package/dist/src/lib/spectral/Bands.svelte +1040 -0
  207. package/dist/src/lib/spectral/BandsAndDos.svelte +134 -0
  208. package/dist/src/lib/spectral/BrillouinBandsDos.svelte +252 -0
  209. package/dist/src/lib/spectral/Dos.svelte +697 -0
  210. package/dist/src/lib/spectral/helpers.ts +1381 -0
  211. package/dist/src/lib/spectral/index.ts +8 -0
  212. package/dist/src/lib/spectral/types.ts +112 -0
  213. package/dist/src/lib/state.svelte.ts +64 -0
  214. package/dist/src/lib/structure/Arrow.svelte +72 -0
  215. package/dist/src/lib/structure/AtomLegend.svelte +815 -0
  216. package/dist/src/lib/structure/Bond.svelte +140 -0
  217. package/dist/src/lib/structure/CanvasTooltip.svelte +33 -0
  218. package/dist/src/lib/structure/CellSelect.svelte +349 -0
  219. package/dist/src/lib/structure/Cylinder.svelte +45 -0
  220. package/dist/src/lib/structure/Lattice.svelte +196 -0
  221. package/dist/src/lib/structure/Structure.svelte +2248 -0
  222. package/dist/src/lib/structure/StructureControls.svelte +1273 -0
  223. package/dist/src/lib/structure/StructureExportPane.svelte +252 -0
  224. package/dist/src/lib/structure/StructureInfoPane.svelte +737 -0
  225. package/dist/src/lib/structure/StructureScene.svelte +2255 -0
  226. package/dist/src/lib/structure/atom-properties.ts +316 -0
  227. package/dist/src/lib/structure/bond-order-perception.ts +447 -0
  228. package/dist/src/lib/structure/bonding.ts +944 -0
  229. package/dist/src/lib/structure/export.ts +861 -0
  230. package/dist/src/lib/structure/index.ts +291 -0
  231. package/dist/src/lib/structure/label-placement.ts +130 -0
  232. package/dist/src/lib/structure/measure.ts +45 -0
  233. package/dist/src/lib/structure/parse.ts +1705 -0
  234. package/dist/src/lib/structure/partial-occupancy.ts +183 -0
  235. package/dist/src/lib/structure/pbc.ts +164 -0
  236. package/dist/src/lib/structure/supercell.ts +226 -0
  237. package/dist/src/lib/structure/validation.ts +11 -0
  238. package/dist/src/lib/symmetry/SymmetryStats.svelte +226 -0
  239. package/dist/src/lib/symmetry/WyckoffTable.svelte +120 -0
  240. package/dist/src/lib/symmetry/cell-transform.ts +118 -0
  241. package/dist/src/lib/symmetry/index.ts +348 -0
  242. package/dist/src/lib/symmetry/spacegroups.ts +404 -0
  243. package/dist/src/lib/table/HeatmapTable.svelte +1833 -0
  244. package/dist/src/lib/table/ToggleMenu.svelte +385 -0
  245. package/dist/src/lib/table/index.ts +139 -0
  246. package/dist/src/lib/theme/ThemeControl.svelte +53 -0
  247. package/dist/src/lib/theme/index.ts +107 -0
  248. package/dist/src/lib/theme/themes.mjs +297 -0
  249. package/dist/src/lib/time.ts +71 -0
  250. package/dist/src/lib/tooltip/TooltipContent.svelte +58 -0
  251. package/dist/src/lib/tooltip/index.ts +2 -0
  252. package/dist/src/lib/tooltip/types.ts +13 -0
  253. package/dist/src/lib/trajectory/Trajectory.svelte +1545 -0
  254. package/dist/src/lib/trajectory/TrajectoryError.svelte +128 -0
  255. package/dist/src/lib/trajectory/TrajectoryExportPane.svelte +357 -0
  256. package/dist/src/lib/trajectory/TrajectoryInfoPane.svelte +313 -0
  257. package/dist/src/lib/trajectory/constants.ts +7 -0
  258. package/dist/src/lib/trajectory/extract.ts +196 -0
  259. package/dist/src/lib/trajectory/format-detect.ts +96 -0
  260. package/dist/src/lib/trajectory/frame-reader.ts +456 -0
  261. package/dist/src/lib/trajectory/helpers.ts +217 -0
  262. package/dist/src/lib/trajectory/index.ts +218 -0
  263. package/dist/src/lib/trajectory/parse/ase.ts +109 -0
  264. package/dist/src/lib/trajectory/parse/hdf5.ts +173 -0
  265. package/dist/src/lib/trajectory/parse/index.ts +411 -0
  266. package/dist/src/lib/trajectory/parse/lammps.ts +215 -0
  267. package/dist/src/lib/trajectory/parse/vasp.ts +102 -0
  268. package/dist/src/lib/trajectory/parse/xyz.ts +143 -0
  269. package/dist/src/lib/trajectory/plotting.ts +599 -0
  270. package/dist/src/lib/trajectory/types.ts +13 -0
  271. package/dist/src/lib/utils.ts +56 -0
  272. package/dist/src/lib/xrd/XrdPlot.svelte +615 -0
  273. package/dist/src/lib/xrd/broadening.ts +130 -0
  274. package/dist/src/lib/xrd/calc-xrd.ts +397 -0
  275. package/dist/src/lib/xrd/index.ts +38 -0
  276. package/dist/src/lib/xrd/parse.ts +858 -0
  277. package/dist/webview.js +29421 -0
  278. package/icon.png +0 -0
  279. package/license +1 -1
  280. package/matterviz-0.3.2.vsix +0 -0
  281. package/matterviz-0.3.4.vsix +0 -0
  282. package/matterviz-0.3.5.vsix +0 -0
  283. package/package.json +1460 -215
  284. package/readme.md +171 -98
  285. package/scripts/sync-config.ts +101 -0
  286. package/src/declarations.d.ts +2 -0
  287. package/src/extension.ts +972 -0
  288. package/src/node-io.ts +65 -0
  289. package/src/types.ts +17 -0
  290. package/src/webview/JsonBrowser.svelte +1079 -0
  291. package/src/webview/PlotPanel.svelte +346 -0
  292. package/src/webview/detect.ts +444 -0
  293. package/src/webview/main.ts +764 -0
  294. package/src/webview/plot-utils.ts +250 -0
  295. package/test-fixtures/all-viz-types.json.gz +0 -0
  296. package/test-fixtures/plot-demo-data.json.gz +0 -0
  297. package/tests/detect.test.ts +604 -0
  298. package/tests/extension.test.ts +2041 -0
  299. package/tests/node-io.test.ts +39 -0
  300. package/tests/plot-utils.test.ts +302 -0
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  302. package/tests/vscode-mock.ts +18 -0
  303. package/tests/webview.test.ts +231 -0
  304. package/tsconfig.json +20 -0
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  306. package/vite.config.ts +34 -0
  307. package/vite.extension.config.ts +34 -0
  308. package/dist/EmptyState.svelte.d.ts +0 -9
  309. package/dist/FilePicker.svelte +0 -360
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  312. package/dist/MillerIndexInput.svelte +0 -66
  313. package/dist/MillerIndexInput.svelte.d.ts +0 -7
  314. package/dist/api/mp.d.ts +0 -6
  315. package/dist/api/mp.js +0 -22
  316. package/dist/api/optimade.d.ts +0 -45
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  318. package/dist/brillouin/BrillouinZone.svelte +0 -546
  319. package/dist/brillouin/BrillouinZone.svelte.d.ts +0 -83
  320. package/dist/brillouin/BrillouinZoneControls.svelte +0 -144
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@@ -0,0 +1,654 @@
1
+ import type { D3ColorSchemeName, D3InterpolateName } from '$lib/colors'
2
+ import * as math from '$lib/math'
3
+ import type { Point, ScaleType, TimeInterval } from '$lib/plot'
4
+ import { get_arcsinh_threshold, get_scale_type_name, is_time_scale } from '$lib/plot/types'
5
+ import { extent, range } from 'd3-array'
6
+ import type { ScaleContinuousNumeric, ScaleTime } from 'd3-scale'
7
+ import {
8
+ scaleLinear,
9
+ scaleLog,
10
+ scaleSequential,
11
+ scaleSequentialLog,
12
+ scaleTime,
13
+ } from 'd3-scale'
14
+ import * as d3_sc from 'd3-scale-chromatic'
15
+
16
+ // Type for ticks parameter - can be count, array of values, time interval, or object mapping values to labels
17
+ export type TicksOption = number | number[] | TimeInterval | Record<number, string>
18
+
19
+ // Dedupe and sort numeric array (used in tick generation)
20
+ const dedupe_sort = (arr: number[]): number[] => [...new Set(arr)].sort((a, b) => a - b)
21
+
22
+ // --- Arcsinh Scale Implementation ---
23
+ // The arcsinh scale provides smooth transition between linear (near zero) and
24
+ // logarithmic (for large |x|) behavior. Unlike log, it handles negative values.
25
+ // Formula: y = asinh(x / threshold) = ln(x/c + sqrt((x/c)² + 1))
26
+
27
+ // Interface for arcsinh scale (D3-compatible)
28
+ // Accepts both number and Date for compatibility with time-based data
29
+ export interface ArcsinhScale {
30
+ (value: number | Date): number
31
+ domain(): [number, number]
32
+ domain(domain: [number, number]): ArcsinhScale
33
+ range(): [number, number]
34
+ range(range: [number, number]): ArcsinhScale
35
+ invert(value: number): number
36
+ copy(): ArcsinhScale
37
+ ticks(count?: number): number[]
38
+ threshold: number
39
+ }
40
+
41
+ // Union type for all scale functions used in plots
42
+ export type PlotScaleFn =
43
+ | ScaleContinuousNumeric<number, number>
44
+ | ScaleTime<number, number>
45
+ | ArcsinhScale
46
+
47
+ // Create an arcsinh scale with configurable threshold
48
+ export function scale_arcsinh(threshold = 1): ArcsinhScale {
49
+ if (!Number.isFinite(threshold) || threshold <= 0) {
50
+ throw new Error(`arcsinh threshold must be a positive finite number, got ${threshold}`)
51
+ }
52
+
53
+ let current_domain: [number, number] = [0, 1]
54
+ let current_range: [number, number] = [0, 1]
55
+
56
+ // Forward transform: data value → arcsinh-space
57
+ const arcsinh_transform = (x: number): number => Math.asinh(x / threshold)
58
+
59
+ // Inverse transform: arcsinh-space → data value
60
+ const sinh_transform = (y: number): number => Math.sinh(y) * threshold
61
+
62
+ // Map from data domain to output range
63
+ // Accepts Date for compatibility with D3 time scales
64
+ const scale = ((value: number | Date): number => {
65
+ const num_value = value instanceof Date ? value.getTime() : value
66
+ const [d_min, d_max] = current_domain
67
+ const [r_min, r_max] = current_range
68
+
69
+ // Handle identical domain endpoints (degenerate case)
70
+ if (d_max === d_min) return (r_min + r_max) / 2
71
+
72
+ // Transform domain endpoints
73
+ const t_min = arcsinh_transform(d_min)
74
+ const t_max = arcsinh_transform(d_max)
75
+
76
+ // Transform input value
77
+ const t_val = arcsinh_transform(num_value)
78
+
79
+ // Linear interpolation in transformed space
80
+ if (t_max === t_min) return (r_min + r_max) / 2
81
+ const t = (t_val - t_min) / (t_max - t_min)
82
+ return r_min + t * (r_max - r_min)
83
+ }) as ArcsinhScale
84
+
85
+ // Domain getter/setter
86
+ scale.domain = function (domain?: [number, number]): [number, number] | ArcsinhScale {
87
+ if (domain === undefined) return current_domain
88
+ current_domain = domain
89
+ return scale
90
+ } as ArcsinhScale[`domain`]
91
+
92
+ // Range getter/setter
93
+ scale.range = function (output_range?: [number, number]): [number, number] | ArcsinhScale {
94
+ if (output_range === undefined) return current_range
95
+ current_range = output_range
96
+ return scale
97
+ } as ArcsinhScale[`range`]
98
+
99
+ // Invert: screen position → data value
100
+ scale.invert = (value: number): number => {
101
+ const [d_min, d_max] = current_domain
102
+ const [r_min, r_max] = current_range
103
+
104
+ // Handle identical domain endpoints (degenerate case)
105
+ if (d_max === d_min) return (d_min + d_max) / 2
106
+
107
+ // Transform domain endpoints
108
+ const t_min = arcsinh_transform(d_min)
109
+ const t_max = arcsinh_transform(d_max)
110
+
111
+ // Inverse linear interpolation
112
+ if (r_max === r_min) return (d_min + d_max) / 2
113
+ const t = (value - r_min) / (r_max - r_min)
114
+ const t_val = t_min + t * (t_max - t_min)
115
+
116
+ // Inverse transform
117
+ return sinh_transform(t_val)
118
+ }
119
+
120
+ // Copy the scale
121
+ scale.copy = (): ArcsinhScale => {
122
+ const copy = scale_arcsinh(threshold)
123
+ copy.domain(current_domain)
124
+ copy.range(current_range)
125
+ return copy
126
+ }
127
+
128
+ // Generate nice ticks for arcsinh scale
129
+ scale.ticks = (count = 10): number[] => {
130
+ return generate_arcsinh_ticks(current_domain[0], current_domain[1], threshold, count)
131
+ }
132
+
133
+ scale.threshold = threshold
134
+
135
+ return scale
136
+ }
137
+
138
+ // Generate nice tick values for arcsinh scale
139
+ // Strategy: symmetric around zero when possible, with powers of 10 for large values
140
+ // Note: For small count values (1 or 2) on mixed ranges, zero takes priority as the
141
+ // most important tick. E.g., count=1 yields [0], count=2 yields [0] plus one boundary.
142
+ export function generate_arcsinh_ticks(
143
+ min: number,
144
+ max: number,
145
+ threshold = 1,
146
+ count = 10,
147
+ ): number[] {
148
+ // Guard against invalid/non-positive threshold to prevent division issues
149
+ const safe_threshold = Math.max(threshold, Number.EPSILON)
150
+ // Normalize reversed domains (min > max)
151
+ const [lo, hi] = min <= max ? [min, max] : [max, min]
152
+
153
+ // For purely positive or purely negative ranges, use log-like spacing
154
+ if (lo >= 0) {
155
+ return generate_positive_arcsinh_ticks(lo, hi, safe_threshold, count)
156
+ }
157
+ if (hi <= 0) {
158
+ // Negative range: mirror the positive logic
159
+ return generate_positive_arcsinh_ticks(-hi, -lo, safe_threshold, count)
160
+ .map((tick) => -tick)
161
+ .toReversed()
162
+ }
163
+
164
+ // Mixed range: symmetric ticks around zero (includes_zero is always true here)
165
+ // For very small counts, we prioritize zero as the most meaningful tick
166
+ const half_count = Math.floor((count - 1) / 2)
167
+ const ticks: number[] = [0]
168
+
169
+ // Add positive ticks
170
+ const pos_ticks = generate_positive_arcsinh_ticks(0, hi, safe_threshold, half_count)
171
+ ticks.push(...pos_ticks.filter((tick) => tick > 0))
172
+
173
+ // Add negative ticks (mirror of positive)
174
+ const neg_ticks = generate_positive_arcsinh_ticks(0, -lo, safe_threshold, half_count)
175
+ ticks.push(...neg_ticks.filter((tick) => tick > 0).map((tick) => -tick))
176
+
177
+ // For small counts where half_count is 0 or 1, ensure at least some boundary coverage
178
+ if (half_count <= 1 && count >= 2) {
179
+ // Add boundaries if not already present and we have room
180
+ const sorted = dedupe_sort(ticks)
181
+ if (sorted.length < count) {
182
+ // Snap the larger-magnitude boundary to a clean power of 10 (raw extremes would render
183
+ // as long unrounded labels); keeps some coverage for very small tick counts.
184
+ const boundary = Math.abs(hi) >= Math.abs(lo) ? hi : lo
185
+ const nice = Math.sign(boundary) * 10 ** Math.floor(Math.log10(Math.abs(boundary)))
186
+ if (Number.isFinite(nice) && nice !== 0 && !sorted.includes(nice)) ticks.push(nice)
187
+ }
188
+ }
189
+
190
+ return dedupe_sort(ticks)
191
+ }
192
+
193
+ // Generate positive arcsinh ticks (helper)
194
+ // Ensures domain boundaries (min, max) are included when they provide meaningful
195
+ // visual anchors that powers-of-10 alone might miss.
196
+ function generate_positive_arcsinh_ticks(
197
+ min: number,
198
+ max: number,
199
+ threshold: number,
200
+ count: number,
201
+ ): number[] {
202
+ if (count <= 0 || max <= min) return []
203
+
204
+ const ticks: number[] = []
205
+
206
+ // For values near threshold, use linear-like spacing
207
+ // For values >> threshold, use log-like spacing (powers of 10)
208
+
209
+ if (max <= threshold * 2) {
210
+ // Small range: use linear ticks
211
+ const step = (max - min) / count
212
+ for (let idx = 0; idx <= count; idx++) {
213
+ const val = min + step * idx
214
+ if (val >= min && val <= max) ticks.push(val)
215
+ }
216
+ } else {
217
+ // Large range: combine linear near zero with powers of 10.
218
+ // Domain endpoints are intentionally NOT added as ticks: raw extremes render as long
219
+ // unrounded labels (e.g. 1325.8239811994677). Powers of 10 plus 2x/5x multiples below
220
+ // already give clean round ticks; pass axis.ticks/axis.format for custom labels.
221
+
222
+ // Add threshold as a tick if in range
223
+ if (threshold >= min && threshold <= max) ticks.push(threshold)
224
+
225
+ // Add powers of 10 that are in range
226
+ const min_power = Math.floor(Math.log10(Math.max(min, threshold / 10)))
227
+ const max_power = Math.ceil(Math.log10(max))
228
+
229
+ for (let power = min_power; power <= max_power; power++) {
230
+ const val = Math.pow(10, power)
231
+ if (val >= min && val <= max) ticks.push(val)
232
+ }
233
+
234
+ // Add intermediate values (2x, 5x) for sparser regions
235
+ if (ticks.length < count) {
236
+ for (let power = min_power; power < max_power; power++) {
237
+ const base = Math.pow(10, power)
238
+ for (const mult of [2, 5]) {
239
+ const val = base * mult
240
+ if (val >= min && val <= max) ticks.push(val)
241
+ }
242
+ }
243
+ }
244
+ }
245
+
246
+ return dedupe_sort(ticks)
247
+ }
248
+
249
+ // Create a scale function based on type, domain, and range
250
+ // Note: Time scales are handled separately via create_time_scale() since ScaleTime
251
+ // has incompatible types (invert returns Date, not number). Use is_time_scale()
252
+ // to detect time mode and call create_time_scale() directly when needed.
253
+ export function create_scale(
254
+ scale_type: ScaleType,
255
+ domain: [number, number],
256
+ output_range: [number, number],
257
+ ): ScaleContinuousNumeric<number, number> | ArcsinhScale {
258
+ const [min_val, max_val] = domain
259
+ const type_name = get_scale_type_name(scale_type)
260
+
261
+ if (type_name === `log`) {
262
+ return scaleLog()
263
+ .domain([Math.max(min_val, math.LOG_EPS), max_val])
264
+ .range(output_range)
265
+ }
266
+ if (type_name === `arcsinh`) {
267
+ const threshold = get_arcsinh_threshold(scale_type)
268
+ return scale_arcsinh(threshold).domain(domain).range(output_range)
269
+ }
270
+ // For 'time' or 'linear', return linear scale (time scales need create_time_scale())
271
+ return scaleLinear().domain(domain).range(output_range)
272
+ }
273
+
274
+ // Create a time scale for time-based data
275
+ export const create_time_scale = (domain: [number, number], output_range: [number, number]) =>
276
+ scaleTime()
277
+ .domain([new Date(domain[0]), new Date(domain[1])])
278
+ .range(output_range)
279
+
280
+ // Unified tick generation function
281
+ export function generate_ticks(
282
+ domain: [number, number],
283
+ scale_type: ScaleType,
284
+ ticks_option: TicksOption | undefined,
285
+ scale_fn: PlotScaleFn, // D3 scale function with .ticks() method
286
+ options: {
287
+ format?: string // For detecting time format
288
+ default_count?: number // Default tick count
289
+ interval_padding?: number // Padding for interval mode
290
+ } = {},
291
+ ): number[] {
292
+ const { format, default_count = 8, interval_padding = 0.1 } = options
293
+ const [min_val, max_val] = domain
294
+
295
+ // If ticks_option is an object (value-to-label mapping), extract values
296
+ if (ticks_option && typeof ticks_option === `object` && !Array.isArray(ticks_option)) {
297
+ const [domain_min, domain_max] = [Math.min(...domain), Math.max(...domain)]
298
+ return Object.keys(ticks_option)
299
+ .map(Number)
300
+ .filter((val) => Number.isFinite(val) && val >= domain_min && val <= domain_max)
301
+ .sort((a, b) => a - b)
302
+ }
303
+
304
+ // If ticks_option is already an array, use it directly
305
+ if (Array.isArray(ticks_option)) return ticks_option
306
+
307
+ // Time-based ticks (explicit scale_type: 'time' or format heuristic for backwards compatibility)
308
+ if (is_time_scale(scale_type, format)) {
309
+ const time_scale = scaleTime().domain([new Date(min_val), new Date(max_val)])
310
+
311
+ let count = 10 // default
312
+ if (typeof ticks_option === `number`) {
313
+ count =
314
+ ticks_option < 0
315
+ ? Math.ceil((max_val - min_val) / Math.abs(ticks_option) / 86_400_000) // milliseconds per day
316
+ : ticks_option
317
+ } else if (typeof ticks_option === `string`) {
318
+ count = ticks_option === `day` ? 30 : ticks_option === `month` ? 12 : 10
319
+ }
320
+
321
+ const ticks = time_scale.ticks(count)
322
+
323
+ if (typeof ticks_option === `string`) {
324
+ if (ticks_option === `month`) {
325
+ return ticks.filter((d: Date) => d.getDate() === 1).map((d: Date) => d.getTime())
326
+ }
327
+ if (ticks_option === `year`) {
328
+ return ticks
329
+ .filter((d: Date) => d.getMonth() === 0 && d.getDate() === 1)
330
+ .map((d: Date) => d.getTime())
331
+ }
332
+ }
333
+ return ticks.map((d: Date) => d.getTime())
334
+ }
335
+
336
+ const type_name = get_scale_type_name(scale_type)
337
+
338
+ // Log scale ticks
339
+ if (type_name === `log`) return generate_log_ticks(min_val, max_val, ticks_option)
340
+
341
+ // Arcsinh scale ticks
342
+ if (type_name === `arcsinh`) {
343
+ const threshold = get_arcsinh_threshold(scale_type)
344
+ const tick_count =
345
+ typeof ticks_option === `number` && ticks_option > 0 ? ticks_option : default_count
346
+ return generate_arcsinh_ticks(min_val, max_val, threshold, tick_count)
347
+ }
348
+
349
+ // Linear scale with interval (negative number indicates interval)
350
+ if (typeof ticks_option === `number` && ticks_option < 0) {
351
+ const interval = Math.abs(ticks_option)
352
+ const start = Math.ceil(min_val / interval) * interval
353
+ return range(start, max_val + interval * interval_padding, interval)
354
+ }
355
+
356
+ // Default ticks using scale function
357
+ const tick_count =
358
+ typeof ticks_option === `number` && ticks_option > 0 ? ticks_option : default_count
359
+
360
+ const ticks = scale_fn.ticks(tick_count)
361
+ return ticks.map(Number)
362
+ }
363
+
364
+ // Calculate domain from array of values (simple version)
365
+ export function calculate_domain(
366
+ values: number[],
367
+ scale_type: ScaleType = `linear`,
368
+ ): [number, number] {
369
+ const [min_val, max_val] = extent(values)
370
+ if (min_val === undefined || max_val === undefined) return [0, 1]
371
+
372
+ const type_name = get_scale_type_name(scale_type)
373
+ // Only log scale needs domain clamping to positive values
374
+ // Arcsinh and linear can handle any values
375
+ return type_name === `log` ? [Math.max(min_val, math.LOG_EPS), max_val] : [min_val, max_val]
376
+ }
377
+
378
+ // Advanced domain calculation with padding and nice boundaries (from ScatterPlot)
379
+ export function get_nice_data_range(
380
+ points: Point[],
381
+ get_value: (p: Point) => number,
382
+ limits: [number | null, number | null],
383
+ scale_type: ScaleType,
384
+ padding_factor: number,
385
+ is_time = false,
386
+ ): [number, number] {
387
+ const [min, max] = limits
388
+ const [min_ext, max_ext] = extent(points, get_value)
389
+ let data_min = min ?? min_ext ?? 0
390
+ let data_max = max ?? max_ext ?? 1
391
+ const type_name = get_scale_type_name(scale_type)
392
+
393
+ // Apply padding *only if* limits were NOT provided
394
+ if (min === null && max === null && points.length > 0) {
395
+ if (data_min !== data_max) {
396
+ // Apply percentage padding based on scale type if there's a range
397
+ const span = data_max - data_min
398
+ if (is_time) {
399
+ const padding_ms = span * padding_factor
400
+ data_min = data_min - padding_ms
401
+ data_max = data_max + padding_ms
402
+ } else if (type_name === `log`) {
403
+ const log_min = Math.log10(Math.max(data_min, math.LOG_EPS))
404
+ const log_max = Math.log10(Math.max(data_max, math.LOG_EPS))
405
+ const log_span = log_max - log_min
406
+ data_min = Math.pow(10, log_min - log_span * padding_factor)
407
+ data_max = Math.pow(10, log_max + log_span * padding_factor)
408
+ } else if (type_name === `arcsinh`) {
409
+ // Arcsinh: apply padding in arcsinh-transformed space
410
+ // Guard against extremely small thresholds that could cause precision issues
411
+ const threshold = Math.max(get_arcsinh_threshold(scale_type), Number.EPSILON)
412
+ const asinh_min = Math.asinh(data_min / threshold)
413
+ const asinh_max = Math.asinh(data_max / threshold)
414
+ const asinh_span = asinh_max - asinh_min
415
+ data_min = Math.sinh(asinh_min - asinh_span * padding_factor) * threshold
416
+ data_max = Math.sinh(asinh_max + asinh_span * padding_factor) * threshold
417
+ } else {
418
+ // Linear scale
419
+ const padding_abs = span * padding_factor
420
+ data_min = data_min - padding_abs
421
+ data_max = data_max + padding_abs
422
+ }
423
+ } else {
424
+ // Handle single data point case with fixed relative padding
425
+ if (is_time) {
426
+ const one_day = 86_400_000 // milliseconds in a day
427
+ data_min = data_min - one_day
428
+ data_max = data_max + one_day
429
+ } else if (type_name === `log`) {
430
+ data_min = Math.max(math.LOG_EPS, data_min / 1.1) // 10% multiplicative padding
431
+ data_max = data_max * 1.1
432
+ } else if (type_name === `arcsinh`) {
433
+ // Arcsinh: 10% padding in transformed space
434
+ // Guard against extremely small thresholds that could cause precision issues
435
+ const threshold = Math.max(get_arcsinh_threshold(scale_type), Number.EPSILON)
436
+ const asinh_val = Math.asinh(data_min / threshold)
437
+ const padding = Math.abs(asinh_val) * 0.1 || 0.1 // Use 0.1 if transformed value is 0 (i.e. data_min = 0)
438
+ data_min = Math.sinh(asinh_val - padding) * threshold
439
+ data_max = Math.sinh(asinh_val + padding) * threshold
440
+ } else {
441
+ const padding_abs = data_min === 0 ? 1 : Math.abs(data_min * 0.1) // 10% additive padding, or 1 if value is 0
442
+ data_min = data_min - padding_abs
443
+ data_max = data_max + padding_abs
444
+ }
445
+ }
446
+ }
447
+
448
+ // If time or no range after padding, return the (potentially padded) domain directly
449
+ if (is_time || data_min === data_max) return [data_min, data_max]
450
+
451
+ // Use D3's nice() to create pretty boundaries
452
+ // For arcsinh, we don't use D3's nice() - just return padded domain
453
+ if (type_name === `arcsinh`) {
454
+ return [data_min, data_max]
455
+ }
456
+
457
+ // Create the scale with the *padded* data domain
458
+ const scale =
459
+ type_name === `log`
460
+ ? scaleLog().domain([
461
+ Math.max(data_min, math.LOG_EPS),
462
+ Math.max(data_max, data_min * 1.1),
463
+ ]) // Ensure log domain > 0
464
+ : scaleLinear().domain([data_min, data_max])
465
+
466
+ scale.nice()
467
+ const [nice_min = data_min, nice_max = data_max] = scale.domain()
468
+ return [nice_min, nice_max]
469
+ }
470
+
471
+ // Generate logarithmic ticks (from ScatterPlot)
472
+ export function generate_log_ticks(
473
+ min: number,
474
+ max: number,
475
+ ticks_option?: TicksOption,
476
+ ): number[] {
477
+ // If ticks_option is already an array, use it directly
478
+ if (Array.isArray(ticks_option)) return ticks_option
479
+ min = Math.max(min, math.LOG_EPS)
480
+ // Ensure a strictly increasing domain for tick generation
481
+ max = Math.max(max, min * 1.1)
482
+
483
+ const min_power = Math.floor(Math.log10(min))
484
+ const max_power = Math.ceil(Math.log10(max))
485
+
486
+ // For very wide ranges, extend the range to include more ticks
487
+ const range_size = max_power - min_power
488
+ const extended_min_power =
489
+ range_size <= 2 ? min_power - 1 : min_power - Math.max(1, Math.floor(range_size / 4))
490
+ const extended_max_power = range_size <= 2 ? max_power + 1 : max_power
491
+
492
+ const powers = range(extended_min_power, extended_max_power + 1).map((power: number) =>
493
+ Math.pow(10, power),
494
+ )
495
+
496
+ // For narrow ranges, include intermediate values
497
+ if (max_power - min_power < 3 && typeof ticks_option === `number` && ticks_option > 5) {
498
+ const detailed_ticks: number[] = []
499
+ powers.forEach((power: number) => {
500
+ detailed_ticks.push(power)
501
+ if (power * 2 <= Math.pow(10, extended_max_power)) detailed_ticks.push(power * 2)
502
+ if (power * 5 <= Math.pow(10, extended_max_power)) detailed_ticks.push(power * 5)
503
+ })
504
+ return detailed_ticks.filter((tick) => tick >= min && tick <= max)
505
+ }
506
+
507
+ return powers.filter((power) => power >= min && power <= max)
508
+ }
509
+
510
+ // Get custom label for a tick value if provided, otherwise return null
511
+ export function get_tick_label(
512
+ tick_value: number,
513
+ ticks_option: TicksOption | undefined,
514
+ ): string | null {
515
+ if (ticks_option && typeof ticks_option === `object` && !Array.isArray(ticks_option)) {
516
+ return ticks_option[tick_value] ?? null
517
+ }
518
+ return null
519
+ }
520
+
521
+ // Create a color scale function from configuration
522
+ export function create_color_scale(
523
+ color_scale_config:
524
+ | {
525
+ type?: ScaleType
526
+ scheme?: D3ColorSchemeName | D3InterpolateName
527
+ value_range?: [number, number]
528
+ }
529
+ | string,
530
+ auto_color_range: [number, number],
531
+ ) {
532
+ const scheme =
533
+ typeof color_scale_config === `string` ? color_scale_config : color_scale_config.scheme
534
+ const candidate_interpolator = Object.entries(d3_sc).find(([key]) => key === scheme)?.[1]
535
+ const interpolator =
536
+ typeof candidate_interpolator === `function`
537
+ ? candidate_interpolator
538
+ : d3_sc.interpolateViridis
539
+ const [min_val, max_val] =
540
+ (typeof color_scale_config === `string` ? undefined : color_scale_config.value_range) ??
541
+ auto_color_range
542
+ const scale_type =
543
+ typeof color_scale_config === `string` ? undefined : color_scale_config.type
544
+
545
+ const type_name = get_scale_type_name(scale_type)
546
+
547
+ if (type_name === `log`) {
548
+ return scaleSequentialLog(interpolator).domain([
549
+ Math.max(min_val, math.LOG_EPS),
550
+ Math.max(max_val, min_val * 1.1),
551
+ ])
552
+ }
553
+ if (type_name === `arcsinh`) {
554
+ // For arcsinh color scale, we create a custom scale that wraps the interpolator
555
+ const threshold = get_arcsinh_threshold(scale_type)
556
+ return create_arcsinh_color_scale(interpolator, [min_val, max_val], threshold)
557
+ }
558
+ return scaleSequential(interpolator).domain([min_val, max_val])
559
+ }
560
+
561
+ // Create an arcsinh-based color scale (custom sequential scale)
562
+ // Returns a D3-compatible scale with both getter and setter for domain
563
+ // Scale function reads from closure state on each call for stable identity
564
+ function create_arcsinh_color_scale(
565
+ interpolator: (t: number) => string,
566
+ initial_domain: [number, number],
567
+ threshold: number,
568
+ ) {
569
+ // Guard against extremely small thresholds that could cause precision issues
570
+ const safe_threshold = Math.max(threshold, Number.EPSILON)
571
+ let current_domain = initial_domain
572
+
573
+ type ArcsinhColorScale = ((value: number) => string) & {
574
+ domain: {
575
+ (): [number, number]
576
+ (new_domain: [number, number]): ArcsinhColorScale
577
+ }
578
+ }
579
+
580
+ // Single scale function that reads current domain on each call
581
+ const scale = ((value: number): string => {
582
+ const [d_min, d_max] = current_domain
583
+ // Handle identical domain endpoints - return middle of color range
584
+ if (d_max === d_min) return interpolator(0.5)
585
+
586
+ const t_min = Math.asinh(d_min / safe_threshold)
587
+ const t_max = Math.asinh(d_max / safe_threshold)
588
+ const t_val = Math.asinh(value / safe_threshold)
589
+ // Normalize to [0, 1]
590
+ const normalized = t_max === t_min ? 0.5 : (t_val - t_min) / (t_max - t_min)
591
+ return interpolator(Math.max(0, Math.min(1, normalized)))
592
+ }) as ArcsinhColorScale
593
+
594
+ // Domain getter/setter for D3 compatibility - returns same scale instance
595
+ scale.domain = function (new_domain?: [number, number]) {
596
+ if (new_domain === undefined) return current_domain
597
+ current_domain = new_domain
598
+ return scale
599
+ } as ArcsinhColorScale[`domain`]
600
+
601
+ return scale
602
+ }
603
+
604
+ // Create a size scale function from configuration
605
+ export function create_size_scale(
606
+ config: {
607
+ type?: ScaleType
608
+ radius_range?: [number, number]
609
+ value_range?: [number, number]
610
+ },
611
+ all_size_values: (number | null)[],
612
+ ) {
613
+ const [min_radius, max_radius] = config.radius_range ?? [2, 10]
614
+ const auto_range =
615
+ all_size_values.length > 0
616
+ ? extent(all_size_values.filter((val): val is number => val !== null))
617
+ : [0, 1]
618
+ const [min_val, max_val] = config.value_range ?? auto_range
619
+ const safe_min = min_val ?? 0
620
+ const safe_max = max_val ?? (safe_min > 0 ? safe_min * 1.1 : 1)
621
+
622
+ const type_name = get_scale_type_name(config.type)
623
+
624
+ if (type_name === `log`) {
625
+ return scaleLog()
626
+ .domain([Math.max(safe_min, math.LOG_EPS), Math.max(safe_max, safe_min * 1.1)])
627
+ .range([min_radius, max_radius])
628
+ .clamp(true)
629
+ }
630
+ if (type_name === `arcsinh`) {
631
+ // Create arcsinh-based size scale
632
+ const threshold = get_arcsinh_threshold(config.type)
633
+ const arcsinh_scale = scale_arcsinh(threshold)
634
+ .domain([safe_min, safe_max])
635
+ .range([min_radius, max_radius])
636
+
637
+ type ClampedSizeScale = ((value: number) => number) & {
638
+ domain: () => [number, number]
639
+ range: () => [number, number]
640
+ }
641
+
642
+ // Wrap with clamping
643
+ const clamped_scale = ((value: number): number => {
644
+ const result = arcsinh_scale(value)
645
+ return Math.max(min_radius, Math.min(max_radius, result))
646
+ }) as ClampedSizeScale
647
+
648
+ clamped_scale.domain = () => arcsinh_scale.domain()
649
+ clamped_scale.range = () => arcsinh_scale.range()
650
+ return clamped_scale
651
+ }
652
+
653
+ return scaleLinear().domain([safe_min, safe_max]).range([min_radius, max_radius]).clamp(true)
654
+ }
@@ -0,0 +1,23 @@
1
+ // SVG path and rendering utilities for plot components.
2
+
3
+ //
4
+ // Generate SVG path for a bar with rounded corners on the "free" end (away from axis).
5
+ // For vertical bars, rounds top corners. For horizontal bars, rounds right corners.
6
+ export function bar_path(
7
+ x: number,
8
+ y: number,
9
+ w: number,
10
+ h: number,
11
+ r: number,
12
+ vertical: boolean = true,
13
+ ): string {
14
+ if (r <= 0) return `M${x},${y}h${w}v${h}h${-w}Z`
15
+
16
+ return vertical
17
+ ? `M${x},${y + h}V${y + r}A${r},${r} 0 0 1 ${x + r},${y}H${
18
+ x + w - r
19
+ }A${r},${r} 0 0 1 ${x + w},${y + r}V${y + h}Z`
20
+ : `M${x},${y}H${x + w - r}A${r},${r} 0 0 1 ${x + w},${y + r}V${
21
+ y + h - r
22
+ }A${r},${r} 0 0 1 ${x + w - r},${y + h}H${x}Z`
23
+ }