matterviz 0.3.2 → 0.3.3

package/dist/layout/json-tree/JsonValue.svelte

@@ -1,116 +1,144 @@
-<script lang="ts">import { getContext, tick } from 'svelte';
-import { JSON_TREE_CONTEXT_KEY } from './types';
-import { format_preview, is_css_color, is_url, parse_edited_value, values_equal, } from './utils';
-let { value, value_type, path, } = $props();
-const ctx = getContext(JSON_TREE_CONTEXT_KEY);
-// Track if value just changed for animation
-let just_changed = $state(false);
-let change_timeout;
-// Expanded state for long strings
-let is_expanded = $state(false);
-// Extract max_string_length threshold for reuse
-let max_len = $derived(ctx?.settings.max_string_length ?? 200);
-let is_long_string = $derived(value_type === `string` && value.length > max_len);
-// Check for changes on mount and when value changes
-$effect(() => {
-    if (!ctx?.settings.highlight_changes)
-        return;
-    const prev = ctx.previous_values.get(path);
+<script lang="ts">
+  import { getContext, tick } from 'svelte'
+  import type { JsonTreeContext, JsonValueType } from './types'
+  import { JSON_TREE_CONTEXT_KEY } from './types'
+  import {
+    format_preview,
+    is_css_color,
+    is_url,
+    parse_edited_value,
+    values_equal,
+  } from './utils'
+
+  let {
+    value,
+    value_type,
+    path,
+  }: {
+    value: unknown
+    value_type: JsonValueType
+    path: string
+  } = $props()
+
+  const ctx = getContext<JsonTreeContext>(JSON_TREE_CONTEXT_KEY)
+
+  // Track if value just changed for animation
+  let just_changed = $state(false)
+  let change_timeout: ReturnType<typeof setTimeout> | undefined
+
+  // Expanded state for long strings
+  let is_expanded = $state(false)
+
+  // Extract max_string_length threshold for reuse
+  let max_len = $derived(ctx?.settings.max_string_length ?? 200)
+  let is_long_string = $derived(
+    value_type === `string` && (value as string).length > max_len,
+  )
+
+  // Check for changes on mount and when value changes
+  $effect(() => {
+    if (!ctx?.settings.highlight_changes) return
+
+    const prev = ctx.previous_values.get(path)
     if (prev !== undefined && !values_equal(prev, value)) {
-        just_changed = true;
-        if (change_timeout)
-            clearTimeout(change_timeout);
-        change_timeout = setTimeout(() => {
-            just_changed = false;
-        }, 1000);
+      just_changed = true
+      if (change_timeout) clearTimeout(change_timeout)
+      change_timeout = setTimeout(() => {
+        just_changed = false
+      }, 1000)
     }
-    ctx.previous_values.set(path, value);
+    ctx.previous_values.set(path, value)
+
     return () => {
-        if (change_timeout)
-            clearTimeout(change_timeout);
-    };
-});
-// Trimmed string for URL/color detection (avoids using raw whitespace in href/style)
-let trimmed_str = $derived(value_type === `string` ? value.trim() : ``);
-// Auto-detect URLs in string values
-let url_detected = $derived(value_type === `string` && is_url(trimmed_str));
-// Auto-detect CSS colors in string values
-let color_detected = $derived(value_type === `string` && is_css_color(trimmed_str) ? trimmed_str : null);
-// Handle click to copy (delayed to avoid firing on double-click-to-edit)
-let click_timer;
-$effect(() => () => {
-    if (click_timer)
-        clearTimeout(click_timer);
-});
-async function handle_click(event) {
-    event.stopPropagation();
-    if (!ctx)
-        return;
+      if (change_timeout) clearTimeout(change_timeout)
+    }
+  })
+
+  // Trimmed string for URL/color detection (avoids using raw whitespace in href/style)
+  let trimmed_str = $derived(value_type === `string` ? (value as string).trim() : ``)
+
+  // Auto-detect URLs in string values
+  let url_detected = $derived(value_type === `string` && is_url(trimmed_str))
+
+  // Auto-detect CSS colors in string values
+  let color_detected = $derived(
+    value_type === `string` && is_css_color(trimmed_str) ? trimmed_str : null,
+  )
+
+  // Handle click to copy (delayed to avoid firing on double-click-to-edit)
+  let click_timer: ReturnType<typeof setTimeout> | undefined
+  $effect(() => () => {
+    if (click_timer) clearTimeout(click_timer)
+  })
+
+  async function handle_click(event: MouseEvent) {
+    event.stopPropagation()
+    if (!ctx) return
     // When editable, delay copy so double-click can cancel it
     if (ctx.settings.editable && ctx.onchange) {
-        if (click_timer)
-            clearTimeout(click_timer);
-        const copy_pos = { clientX: event.clientX, clientY: event.clientY };
-        click_timer = setTimeout(() => ctx.copy_value(path, value, copy_pos), 250);
+      if (click_timer) clearTimeout(click_timer)
+      const copy_pos = { clientX: event.clientX, clientY: event.clientY }
+      click_timer = setTimeout(() => ctx.copy_value(path, value, copy_pos), 250)
+    } else {
+      await ctx.copy_value(path, value, event)
     }
-    else {
-        await ctx.copy_value(path, value, event);
-    }
-}
-// Format display value - strings use custom truncation, others use format_preview
-let display_value = $derived.by(() => {
-    if (value_type === `circular`)
-        return `[Circular]`;
+  }
+
+  // Format display value - strings use custom truncation, others use format_preview
+  let display_value = $derived.by(() => {
+    if (value_type === `circular`) return `[Circular]`
     if (value_type === `string`) {
-        const str = value;
-        return is_long_string && !is_expanded
-            ? `"${str.slice(0, max_len)}..."`
-            : `"${str}"`;
+      const str = value as string
+      return is_long_string && !is_expanded
+        ? `"${str.slice(0, max_len)}..."`
+        : `"${str}"`
     }
-    return format_preview(value);
-});
-// Check if string is truncated
-let is_truncated = $derived(is_long_string && !is_expanded);
-// Toggle string expansion
-function toggle_expand(event) {
-    event.stopPropagation();
-    is_expanded = !is_expanded;
-}
-// === Inline Editing ===
-let editing = $state(false);
-let edit_text = $state(``);
-let edit_input = $state(null);
-function start_edit(event) {
-    if (!ctx?.settings.editable || !ctx.onchange)
-        return;
-    event.stopPropagation();
+    return format_preview(value)
+  })
+
+  // Check if string is truncated
+  let is_truncated = $derived(is_long_string && !is_expanded)
+
+  // Toggle string expansion
+  function toggle_expand(event: MouseEvent) {
+    event.stopPropagation()
+    is_expanded = !is_expanded
+  }
+
+  // === Inline Editing ===
+  let editing = $state(false)
+  let edit_text = $state(``)
+  let edit_input = $state<HTMLInputElement | null>(null)
+
+  function start_edit(event: MouseEvent) {
+    if (!ctx?.settings.editable || !ctx.onchange) return
+    event.stopPropagation()
     // Cancel pending click-to-copy
-    if (click_timer)
-        clearTimeout(click_timer);
+    if (click_timer) clearTimeout(click_timer)
     // Pre-fill with raw value (strings without quotes)
-    edit_text = value_type === `string` ? value : String(value);
-    editing = true;
-    tick().then(() => edit_input?.select());
-}
-function commit_edit() {
-    if (!editing)
-        return;
-    editing = false;
-    const new_value = parse_edited_value(edit_text);
+    edit_text = value_type === `string` ? (value as string) : String(value)
+    editing = true
+    tick().then(() => edit_input?.select())
+  }
+
+  function commit_edit() {
+    if (!editing) return
+    editing = false
+    const new_value = parse_edited_value(edit_text)
     if (!values_equal(new_value, value)) {
-        ctx?.onchange?.(path, new_value, value);
+      ctx?.onchange?.(path, new_value, value)
     }
-}
-function handle_edit_keydown(event) {
+  }
+
+  function handle_edit_keydown(event: KeyboardEvent) {
     if (event.key === `Enter`) {
-        event.preventDefault();
-        commit_edit();
-    }
-    else if (event.key === `Escape`) {
-        event.preventDefault();
-        editing = false;
+      event.preventDefault()
+      commit_edit()
+    } else if (event.key === `Escape`) {
+      event.preventDefault()
+      editing = false
     }
-}
+  }
 </script>
 
 {#if editing}

package/dist/layout/json-tree/utils.js

@@ -540,8 +540,10 @@ export function compute_diff(old_val, new_val, current_path = ``, result = new M
     }
     // Both primitive: compare values (with NaN === NaN special case)
     if (is_primitive_type(old_type)) {
-        const both_nan = typeof old_val === `number` && typeof new_val === `number` &&
-            Number.isNaN(old_val) && Number.isNaN(new_val);
+        const both_nan = typeof old_val === `number` &&
+            typeof new_val === `number` &&
+            Number.isNaN(old_val) &&
+            Number.isNaN(new_val);
         if (!both_nan && old_val !== new_val) {
             result.set(current_path, {
                 status: `changed`,

package/dist/marching-cubes.js

@@ -1,7 +1,30 @@
 // Edge table: for each cube configuration (256 cases), which edges are intersected
 // Each bit indicates whether that edge has an intersection
-// deno-fmt-ignore
-const EDGE_TABLE = [0x0, 0x109, 0x203, 0x30a, 0x406, 0x50f, 0x605, 0x70c, 0x80c, 0x905, 0xa0f, 0xb06, 0xc0a, 0xd03, 0xe09, 0xf00, 0x190, 0x99, 0x393, 0x29a, 0x596, 0x49f, 0x795, 0x69c, 0x99c, 0x895, 0xb9f, 0xa96, 0xd9a, 0xc93, 0xf99, 0xe90, 0x230, 0x339, 0x33, 0x13a, 0x636, 0x73f, 0x435, 0x53c, 0xa3c, 0xb35, 0x83f, 0x936, 0xe3a, 0xf33, 0xc39, 0xd30, 0x3a0, 0x2a9, 0x1a3, 0xaa, 0x7a6, 0x6af, 0x5a5, 0x4ac, 0xbac, 0xaa5, 0x9af, 0x8a6, 0xfaa, 0xea3, 0xda9, 0xca0, 0x460, 0x569, 0x663, 0x76a, 0x66, 0x16f, 0x265, 0x36c, 0xc6c, 0xd65, 0xe6f, 0xf66, 0x86a, 0x963, 0xa69, 0xb60, 0x5f0, 0x4f9, 0x7f3, 0x6fa, 0x1f6, 0xff, 0x3f5, 0x2fc, 0xdfc, 0xcf5, 0xfff, 0xef6, 0x9fa, 0x8f3, 0xbf9, 0xaf0, 0x650, 0x759, 0x453, 0x55a, 0x256, 0x35f, 0x55, 0x15c, 0xe5c, 0xf55, 0xc5f, 0xd56, 0xa5a, 0xb53, 0x859, 0x950, 0x7c0, 0x6c9, 0x5c3, 0x4ca, 0x3c6, 0x2cf, 0x1c5, 0xcc, 0xfcc, 0xec5, 0xdcf, 0xcc6, 0xbca, 0xac3, 0x9c9, 0x8c0, 0x8c0, 0x9c9, 0xac3, 0xbca, 0xcc6, 0xdcf, 0xec5, 0xfcc, 0xcc, 0x1c5, 0x2cf, 0x3c6, 0x4ca, 0x5c3, 0x6c9, 0x7c0, 0x950, 0x859, 0xb53, 0xa5a, 0xd56, 0xc5f, 0xf55, 0xe5c, 0x15c, 0x55, 0x35f, 0x256, 0x55a, 0x453, 0x759, 0x650, 0xaf0, 0xbf9, 0x8f3, 0x9fa, 0xef6, 0xfff, 0xcf5, 0xdfc, 0x2fc, 0x3f5, 0xff, 0x1f6, 0x6fa, 0x7f3, 0x4f9, 0x5f0, 0xb60, 0xa69, 0x963, 0x86a, 0xf66, 0xe6f, 0xd65, 0xc6c, 0x36c, 0x265, 0x16f, 0x66, 0x76a, 0x663, 0x569, 0x460, 0xca0, 0xda9, 0xea3, 0xfaa, 0x8a6, 0x9af, 0xaa5, 0xbac, 0x4ac, 0x5a5, 0x6af, 0x7a6, 0xaa, 0x1a3, 0x2a9, 0x3a0, 0xd30, 0xc39, 0xf33, 0xe3a, 0x936, 0x83f, 0xb35, 0xa3c, 0x53c, 0x435, 0x73f, 0x636, 0x13a, 0x33, 0x339, 0x230, 0xe90, 0xf99, 0xc93, 0xd9a, 0xa96, 0xb9f, 0x895, 0x99c, 0x69c, 0x795, 0x49f, 0x596, 0x29a, 0x393, 0x99, 0x190, 0xf00, 0xe09, 0xd03, 0xc0a, 0xb06, 0xa0f, 0x905, 0x80c, 0x70c, 0x605, 0x50f, 0x406, 0x30a, 0x203, 0x109, 0x0];
+// oxfmt-ignore
+const EDGE_TABLE = [
+    0x0, 0x109, 0x203, 0x30a, 0x406, 0x50f, 0x605, 0x70c, 0x80c, 0x905, 0xa0f, 0xb06, 0xc0a,
+    0xd03, 0xe09, 0xf00, 0x190, 0x99, 0x393, 0x29a, 0x596, 0x49f, 0x795, 0x69c, 0x99c,
+    0x895, 0xb9f, 0xa96, 0xd9a, 0xc93, 0xf99, 0xe90, 0x230, 0x339, 0x33, 0x13a, 0x636,
+    0x73f, 0x435, 0x53c, 0xa3c, 0xb35, 0x83f, 0x936, 0xe3a, 0xf33, 0xc39, 0xd30, 0x3a0,
+    0x2a9, 0x1a3, 0xaa, 0x7a6, 0x6af, 0x5a5, 0x4ac, 0xbac, 0xaa5, 0x9af, 0x8a6, 0xfaa,
+    0xea3, 0xda9, 0xca0, 0x460, 0x569, 0x663, 0x76a, 0x66, 0x16f, 0x265, 0x36c, 0xc6c,
+    0xd65, 0xe6f, 0xf66, 0x86a, 0x963, 0xa69, 0xb60, 0x5f0, 0x4f9, 0x7f3, 0x6fa, 0x1f6,
+    0xff, 0x3f5, 0x2fc, 0xdfc, 0xcf5, 0xfff, 0xef6, 0x9fa, 0x8f3, 0xbf9, 0xaf0, 0x650,
+    0x759, 0x453, 0x55a, 0x256, 0x35f, 0x55, 0x15c, 0xe5c, 0xf55, 0xc5f, 0xd56, 0xa5a,
+    0xb53, 0x859, 0x950, 0x7c0, 0x6c9, 0x5c3, 0x4ca, 0x3c6, 0x2cf, 0x1c5, 0xcc, 0xfcc,
+    0xec5, 0xdcf, 0xcc6, 0xbca, 0xac3, 0x9c9, 0x8c0, 0x8c0, 0x9c9, 0xac3, 0xbca, 0xcc6,
+    0xdcf, 0xec5, 0xfcc, 0xcc, 0x1c5, 0x2cf, 0x3c6, 0x4ca, 0x5c3, 0x6c9, 0x7c0, 0x950,
+    0x859, 0xb53, 0xa5a, 0xd56, 0xc5f, 0xf55, 0xe5c, 0x15c, 0x55, 0x35f, 0x256, 0x55a,
+    0x453, 0x759, 0x650, 0xaf0, 0xbf9, 0x8f3, 0x9fa, 0xef6, 0xfff, 0xcf5, 0xdfc, 0x2fc,
+    0x3f5, 0xff, 0x1f6, 0x6fa, 0x7f3, 0x4f9, 0x5f0, 0xb60, 0xa69, 0x963, 0x86a, 0xf66,
+    0xe6f, 0xd65, 0xc6c, 0x36c, 0x265, 0x16f, 0x66, 0x76a, 0x663, 0x569, 0x460, 0xca0,
+    0xda9, 0xea3, 0xfaa, 0x8a6, 0x9af, 0xaa5, 0xbac, 0x4ac, 0x5a5, 0x6af, 0x7a6, 0xaa,
+    0x1a3, 0x2a9, 0x3a0, 0xd30, 0xc39, 0xf33, 0xe3a, 0x936, 0x83f, 0xb35, 0xa3c, 0x53c,
+    0x435, 0x73f, 0x636, 0x13a, 0x33, 0x339, 0x230, 0xe90, 0xf99, 0xc93, 0xd9a, 0xa96,
+    0xb9f, 0x895, 0x99c, 0x69c, 0x795, 0x49f, 0x596, 0x29a, 0x393, 0x99, 0x190, 0xf00,
+    0xe09, 0xd03, 0xc0a, 0xb06, 0xa0f, 0x905, 0x80c, 0x70c, 0x605, 0x50f, 0x406, 0x30a,
+    0x203, 0x109, 0x0,
+];
 // Triangle table: for each cube configuration, list of edge triplets forming triangles
 // -1 marks the end of the triangle list for that configuration
 const TRI_TABLE = [

package/dist/math.d.ts

@@ -2,17 +2,7 @@ import type { LatticeParams, Pbc } from './structure/index';
 export type Vec2 = [number, number];
 export type Vec3 = [number, number, number];
 export type Vec4 = [number, number, number, number];
-export type Vec9 = [
-    number,
-    number,
-    number,
-    number,
-    number,
-    number,
-    number,
-    number,
-    number
-];
+export type Vec9 = [number, number, number, number, number, number, number, number, number];
 export type Matrix3x3 = [Vec3, Vec3, Vec3];
 export type Matrix4x4 = [Vec4, Vec4, Vec4, Vec4];
 export type NdVector = number[];
@@ -46,23 +36,29 @@ export declare function calc_lattice_params(matrix: Matrix3x3): LatticeParams &
 };
 export declare const scale: <T extends NdVector>(vec: T, factor: number) => T;
 export declare const euclidean_dist: (vec1: NdVector, vec2: NdVector) => number;
-export declare function pbc_dist(pos1: Vec3, // First position vector (Cartesian coordinates)
-pos2: Vec3, // Second position vector (Cartesian coordinates)
-lattice_matrix: Matrix3x3, // 3x3 lattice matrix where each row is a lattice vector
-lattice_inv?: Matrix3x3, // Optional pre-computed inverse matrix for optimization (since lattice is usually constant and repeatedly inverting matrix is expensive)
-pbc?: Pbc): number;
+export declare function min_image_displacement(from: Vec3, to: Vec3, lattice_matrix: Matrix3x3, converters?: LatticeConverters, pbc?: Pbc): Vec3;
+export declare function pbc_dist(pos1: Vec3, pos2: Vec3, lattice_matrix: Matrix3x3, converters?: LatticeConverters, pbc?: Pbc): number;
 export declare function matrix_inverse_3x3(matrix: Matrix3x3): Matrix3x3;
 export declare function mat3x3_vec3_multiply(matrix: Matrix3x3, vector: Vec3): Vec3;
 export declare function add<T extends NdVector>(...vecs: T[]): T;
 export declare function subtract<T extends NdVector>(vec1: T, vec2: T): T;
-export declare function dot(vec1: NdVector | NdVector[], vec2: NdVector | NdVector[]): number | number[] | number[][];
+export declare function dot(vec1: NdVector, vec2: NdVector): number;
+export declare function dot(vec1: NdVector[], vec2: NdVector): number[];
+export declare function dot(vec1: NdVector[], vec2: NdVector[]): number[][];
 export declare function to_voigt(tensor: number[][]): number[];
 export declare function from_voigt(voigt: number[]): number[][];
 export declare function vec9_to_mat3x3(flat_array: number[]): number[][];
 export declare function tensor_to_flat_array(tensor: number[][]): number[];
 export declare const transpose_3x3_matrix: (matrix: Matrix3x3) => Matrix3x3;
+export declare function scale_lattice_matrix(orig_matrix: Matrix3x3, scaling_factors: Vec3): Matrix3x3;
 export declare const create_frac_to_cart: (lattice: Matrix3x3) => (frac: Vec3) => Vec3;
 export declare const create_cart_to_frac: (lattice: Matrix3x3) => (cart: Vec3) => Vec3;
+export type LatticeConverters = {
+    cart_to_frac: (v: Vec3) => Vec3;
+    frac_to_cart: (v: Vec3) => Vec3;
+    reciprocal_axis_norms: Vec3;
+};
+export declare const create_lattice_converters: (lattice: Matrix3x3) => LatticeConverters;
 export declare function cell_to_lattice_matrix(a: number, b: number, c: number, alpha: number, beta: number, gamma: number): Matrix3x3;
 export declare function det_3x3(matrix: Matrix3x3): number;
 export declare function get_coefficient_of_variation(values: number[]): number;