matterviz 0.3.1 → 0.3.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (257) hide show
  1. package/dist/FilePicker.svelte +37 -20
  2. package/dist/Icon.svelte +2 -2
  3. package/dist/app.css +29 -0
  4. package/dist/brillouin/BrillouinZone.svelte +19 -61
  5. package/dist/brillouin/BrillouinZone.svelte.d.ts +1 -1
  6. package/dist/brillouin/BrillouinZoneExportPane.svelte +12 -20
  7. package/dist/brillouin/BrillouinZoneScene.svelte +2 -2
  8. package/dist/brillouin/BrillouinZoneScene.svelte.d.ts +1 -1
  9. package/dist/chempot-diagram/ChemPotDiagram.svelte +192 -0
  10. package/dist/chempot-diagram/ChemPotDiagram.svelte.d.ts +13 -0
  11. package/dist/chempot-diagram/ChemPotDiagram2D.svelte +677 -0
  12. package/dist/chempot-diagram/ChemPotDiagram2D.svelte.d.ts +16 -0
  13. package/dist/chempot-diagram/ChemPotDiagram3D.svelte +2688 -0
  14. package/dist/chempot-diagram/ChemPotDiagram3D.svelte.d.ts +16 -0
  15. package/dist/chempot-diagram/ChemPotScene3D.svelte +8 -0
  16. package/dist/chempot-diagram/ChemPotScene3D.svelte.d.ts +7 -0
  17. package/dist/chempot-diagram/color.d.ts +10 -0
  18. package/dist/chempot-diagram/color.js +33 -0
  19. package/dist/chempot-diagram/compute.d.ts +38 -0
  20. package/dist/chempot-diagram/compute.js +650 -0
  21. package/dist/chempot-diagram/index.d.ts +5 -0
  22. package/dist/chempot-diagram/index.js +5 -0
  23. package/dist/chempot-diagram/pointer.d.ts +16 -0
  24. package/dist/chempot-diagram/pointer.js +40 -0
  25. package/dist/chempot-diagram/temperature.d.ts +15 -0
  26. package/dist/chempot-diagram/temperature.js +37 -0
  27. package/dist/chempot-diagram/types.d.ts +83 -0
  28. package/dist/chempot-diagram/types.js +27 -0
  29. package/dist/colors/index.d.ts +3 -1
  30. package/dist/colors/index.js +4 -0
  31. package/dist/composition/BarChart.svelte +13 -22
  32. package/dist/composition/BubbleChart.svelte +5 -3
  33. package/dist/composition/FormulaFilter.svelte +586 -94
  34. package/dist/composition/FormulaFilter.svelte.d.ts +35 -1
  35. package/dist/composition/PieChart.svelte +43 -18
  36. package/dist/composition/PieChart.svelte.d.ts +1 -1
  37. package/dist/convex-hull/ConvexHull.svelte +4 -2
  38. package/dist/convex-hull/ConvexHull.svelte.d.ts +1 -1
  39. package/dist/convex-hull/ConvexHull2D.svelte +13 -44
  40. package/dist/convex-hull/ConvexHull2D.svelte.d.ts +1 -1
  41. package/dist/convex-hull/ConvexHull3D.svelte +16 -7
  42. package/dist/convex-hull/ConvexHull3D.svelte.d.ts +1 -1
  43. package/dist/convex-hull/ConvexHull4D.svelte +17 -7
  44. package/dist/convex-hull/ConvexHull4D.svelte.d.ts +1 -1
  45. package/dist/convex-hull/ConvexHullControls.svelte.d.ts +1 -1
  46. package/dist/convex-hull/ConvexHullStats.svelte +701 -226
  47. package/dist/convex-hull/ConvexHullStats.svelte.d.ts +6 -1
  48. package/dist/convex-hull/ConvexHullTooltip.svelte +1 -0
  49. package/dist/convex-hull/demo-temperature.d.ts +6 -0
  50. package/dist/convex-hull/demo-temperature.js +36 -0
  51. package/dist/convex-hull/helpers.d.ts +1 -1
  52. package/dist/convex-hull/helpers.js +2 -4
  53. package/dist/convex-hull/index.d.ts +1 -0
  54. package/dist/convex-hull/index.js +1 -0
  55. package/dist/convex-hull/thermodynamics.d.ts +8 -21
  56. package/dist/convex-hull/thermodynamics.js +106 -17
  57. package/dist/convex-hull/types.d.ts +5 -0
  58. package/dist/convex-hull/types.js +5 -0
  59. package/dist/coordination/CoordinationBarPlot.svelte +29 -46
  60. package/dist/element/BohrAtom.svelte +1 -1
  61. package/dist/element/data.js +2 -14
  62. package/dist/element/data.json.gz +0 -0
  63. package/dist/element/types.d.ts +1 -0
  64. package/dist/fermi-surface/FermiSurface.svelte +20 -64
  65. package/dist/fermi-surface/FermiSurface.svelte.d.ts +1 -1
  66. package/dist/fermi-surface/FermiSurfaceControls.svelte.d.ts +1 -1
  67. package/dist/fermi-surface/FermiSurfaceScene.svelte +1 -1
  68. package/dist/fermi-surface/FermiSurfaceScene.svelte.d.ts +1 -1
  69. package/dist/fermi-surface/parse.js +16 -22
  70. package/dist/heatmap-matrix/HeatmapMatrix.svelte +1273 -0
  71. package/dist/heatmap-matrix/HeatmapMatrix.svelte.d.ts +110 -0
  72. package/dist/heatmap-matrix/HeatmapMatrixControls.svelte +171 -0
  73. package/dist/heatmap-matrix/HeatmapMatrixControls.svelte.d.ts +31 -0
  74. package/dist/heatmap-matrix/index.d.ts +53 -0
  75. package/dist/heatmap-matrix/index.js +100 -0
  76. package/dist/heatmap-matrix/shared.d.ts +2 -0
  77. package/dist/heatmap-matrix/shared.js +4 -0
  78. package/dist/icons.d.ts +111 -0
  79. package/dist/icons.js +111 -0
  80. package/dist/index.d.ts +3 -1
  81. package/dist/index.js +3 -1
  82. package/dist/io/export.js +15 -3
  83. package/dist/io/file-drop.d.ts +7 -0
  84. package/dist/io/file-drop.js +43 -0
  85. package/dist/io/index.d.ts +2 -2
  86. package/dist/io/index.js +2 -112
  87. package/dist/io/types.d.ts +1 -0
  88. package/dist/io/url-drop.d.ts +2 -0
  89. package/dist/io/url-drop.js +118 -0
  90. package/dist/isosurface/Isosurface.svelte +101 -45
  91. package/dist/isosurface/IsosurfaceControls.svelte +19 -0
  92. package/dist/isosurface/parse.js +73 -30
  93. package/dist/isosurface/slice.d.ts +2 -1
  94. package/dist/isosurface/slice.js +3 -3
  95. package/dist/isosurface/types.d.ts +13 -1
  96. package/dist/isosurface/types.js +98 -0
  97. package/dist/labels.d.ts +2 -1
  98. package/dist/labels.js +1 -0
  99. package/dist/layout/InfoTag.svelte +62 -62
  100. package/dist/layout/SubpageGrid.svelte +74 -0
  101. package/dist/layout/SubpageGrid.svelte.d.ts +14 -0
  102. package/dist/layout/index.d.ts +1 -0
  103. package/dist/layout/index.js +1 -0
  104. package/dist/layout/json-tree/JsonNode.svelte +83 -85
  105. package/dist/layout/json-tree/JsonTree.svelte +20 -19
  106. package/dist/layout/json-tree/JsonTree.svelte.d.ts +1 -1
  107. package/dist/layout/json-tree/JsonValue.svelte +196 -116
  108. package/dist/layout/json-tree/types.d.ts +10 -2
  109. package/dist/layout/json-tree/utils.d.ts +2 -0
  110. package/dist/layout/json-tree/utils.js +33 -0
  111. package/dist/math.d.ts +7 -0
  112. package/dist/math.js +358 -7
  113. package/dist/overlays/ContextMenu.svelte +3 -2
  114. package/dist/overlays/DraggablePane.svelte +163 -58
  115. package/dist/overlays/DraggablePane.svelte.d.ts +2 -0
  116. package/dist/phase-diagram/IsobaricBinaryPhaseDiagram.svelte +232 -77
  117. package/dist/phase-diagram/IsobaricBinaryPhaseDiagram.svelte.d.ts +6 -2
  118. package/dist/phase-diagram/PhaseDiagramControls.svelte +32 -11
  119. package/dist/phase-diagram/PhaseDiagramControls.svelte.d.ts +3 -2
  120. package/dist/phase-diagram/PhaseDiagramEditorPane.svelte +103 -0
  121. package/dist/phase-diagram/PhaseDiagramEditorPane.svelte.d.ts +15 -0
  122. package/dist/phase-diagram/PhaseDiagramExportPane.svelte +102 -95
  123. package/dist/phase-diagram/PhaseDiagramExportPane.svelte.d.ts +7 -0
  124. package/dist/phase-diagram/PhaseDiagramTooltip.svelte +100 -26
  125. package/dist/phase-diagram/PhaseDiagramTooltip.svelte.d.ts +6 -3
  126. package/dist/phase-diagram/index.d.ts +2 -0
  127. package/dist/phase-diagram/index.js +2 -0
  128. package/dist/phase-diagram/svg-to-diagram.d.ts +2 -0
  129. package/dist/phase-diagram/svg-to-diagram.js +865 -0
  130. package/dist/phase-diagram/types.d.ts +10 -0
  131. package/dist/phase-diagram/utils.d.ts +7 -4
  132. package/dist/phase-diagram/utils.js +149 -59
  133. package/dist/plot/AxisLabel.svelte +26 -0
  134. package/dist/plot/AxisLabel.svelte.d.ts +16 -0
  135. package/dist/plot/BarPlot.svelte +473 -228
  136. package/dist/plot/BarPlot.svelte.d.ts +3 -3
  137. package/dist/plot/BarPlotControls.svelte +3 -2
  138. package/dist/plot/BarPlotControls.svelte.d.ts +1 -1
  139. package/dist/plot/ColorBar.svelte +54 -54
  140. package/dist/plot/ColorBar.svelte.d.ts +1 -1
  141. package/dist/plot/ColorScaleSelect.svelte +1 -1
  142. package/dist/plot/ElementScatter.svelte +3 -2
  143. package/dist/plot/FillArea.svelte +4 -1
  144. package/dist/plot/Histogram.svelte +320 -230
  145. package/dist/plot/Histogram.svelte.d.ts +2 -2
  146. package/dist/plot/HistogramControls.svelte +29 -10
  147. package/dist/plot/HistogramControls.svelte.d.ts +6 -2
  148. package/dist/plot/InteractiveAxisLabel.svelte.d.ts +2 -2
  149. package/dist/plot/PlotControls.svelte +109 -27
  150. package/dist/plot/PlotControls.svelte.d.ts +1 -1
  151. package/dist/plot/PlotLegend.svelte +1 -1
  152. package/dist/plot/PortalSelect.svelte +2 -1
  153. package/dist/plot/ReferenceLine.svelte +2 -1
  154. package/dist/plot/ReferenceLine.svelte.d.ts +1 -0
  155. package/dist/plot/ReferencePlane.svelte +1 -3
  156. package/dist/plot/ScatterPlot.svelte +343 -209
  157. package/dist/plot/ScatterPlot.svelte.d.ts +3 -3
  158. package/dist/plot/ScatterPlot3D.svelte.d.ts +2 -2
  159. package/dist/plot/ScatterPlot3DControls.svelte +203 -250
  160. package/dist/plot/ScatterPlot3DScene.svelte +4 -7
  161. package/dist/plot/ScatterPlot3DScene.svelte.d.ts +2 -2
  162. package/dist/plot/ScatterPlotControls.svelte +95 -55
  163. package/dist/plot/ScatterPlotControls.svelte.d.ts +1 -1
  164. package/dist/plot/ZeroLines.svelte +44 -0
  165. package/dist/plot/ZeroLines.svelte.d.ts +32 -0
  166. package/dist/plot/ZoomRect.svelte +21 -0
  167. package/dist/plot/ZoomRect.svelte.d.ts +8 -0
  168. package/dist/plot/axis-utils.d.ts +1 -1
  169. package/dist/plot/index.d.ts +6 -2
  170. package/dist/plot/index.js +6 -2
  171. package/dist/plot/interactions.d.ts +8 -10
  172. package/dist/plot/interactions.js +2 -3
  173. package/dist/plot/layout.d.ts +7 -1
  174. package/dist/plot/layout.js +12 -4
  175. package/dist/plot/reference-line.d.ts +4 -21
  176. package/dist/plot/reference-line.js +7 -81
  177. package/dist/plot/types.d.ts +42 -17
  178. package/dist/plot/types.js +10 -0
  179. package/dist/plot/utils/label-placement.js +13 -10
  180. package/dist/plot/utils.d.ts +1 -0
  181. package/dist/plot/utils.js +14 -0
  182. package/dist/rdf/RdfPlot.svelte +55 -66
  183. package/dist/settings.d.ts +3 -0
  184. package/dist/settings.js +17 -3
  185. package/dist/spectral/Bands.svelte +515 -143
  186. package/dist/spectral/Bands.svelte.d.ts +22 -2
  187. package/dist/spectral/helpers.d.ts +23 -1
  188. package/dist/spectral/helpers.js +65 -9
  189. package/dist/spectral/types.d.ts +2 -0
  190. package/dist/structure/AtomLegend.svelte +29 -8
  191. package/dist/structure/AtomLegend.svelte.d.ts +1 -1
  192. package/dist/structure/CellSelect.svelte +92 -22
  193. package/dist/structure/Structure.svelte +108 -118
  194. package/dist/structure/Structure.svelte.d.ts +1 -1
  195. package/dist/structure/StructureControls.svelte +25 -22
  196. package/dist/structure/StructureControls.svelte.d.ts +1 -1
  197. package/dist/structure/StructureInfoPane.svelte +7 -1
  198. package/dist/structure/StructureScene.svelte +104 -66
  199. package/dist/structure/StructureScene.svelte.d.ts +2 -1
  200. package/dist/structure/atom-properties.d.ts +6 -2
  201. package/dist/structure/atom-properties.js +38 -25
  202. package/dist/structure/export.js +10 -7
  203. package/dist/structure/ferrox-wasm-types.d.ts +3 -2
  204. package/dist/structure/ferrox-wasm-types.js +0 -3
  205. package/dist/structure/ferrox-wasm.d.ts +3 -2
  206. package/dist/structure/ferrox-wasm.js +1 -2
  207. package/dist/structure/index.d.ts +6 -0
  208. package/dist/structure/index.js +22 -0
  209. package/dist/structure/parse.js +19 -16
  210. package/dist/structure/partial-occupancy.d.ts +25 -0
  211. package/dist/structure/partial-occupancy.js +102 -0
  212. package/dist/structure/validation.js +6 -3
  213. package/dist/symmetry/SymmetryStats.svelte +18 -4
  214. package/dist/symmetry/WyckoffTable.svelte +18 -10
  215. package/dist/symmetry/index.d.ts +7 -4
  216. package/dist/symmetry/index.js +83 -18
  217. package/dist/table/HeatmapTable.svelte +425 -65
  218. package/dist/table/HeatmapTable.svelte.d.ts +12 -1
  219. package/dist/table/ToggleMenu.svelte +2 -0
  220. package/dist/table/index.d.ts +2 -0
  221. package/dist/trajectory/Trajectory.svelte +147 -145
  222. package/dist/trajectory/TrajectoryExportPane.svelte +13 -9
  223. package/dist/trajectory/TrajectoryExportPane.svelte.d.ts +1 -1
  224. package/dist/trajectory/constants.d.ts +6 -0
  225. package/dist/trajectory/constants.js +7 -0
  226. package/dist/trajectory/extract.js +3 -5
  227. package/dist/trajectory/format-detect.d.ts +9 -0
  228. package/dist/trajectory/format-detect.js +76 -0
  229. package/dist/trajectory/frame-reader.d.ts +17 -0
  230. package/dist/trajectory/frame-reader.js +339 -0
  231. package/dist/trajectory/helpers.d.ts +15 -0
  232. package/dist/trajectory/helpers.js +187 -0
  233. package/dist/trajectory/index.d.ts +1 -0
  234. package/dist/trajectory/index.js +11 -4
  235. package/dist/trajectory/parse/ase.d.ts +2 -0
  236. package/dist/trajectory/parse/ase.js +76 -0
  237. package/dist/trajectory/parse/hdf5.d.ts +2 -0
  238. package/dist/trajectory/parse/hdf5.js +121 -0
  239. package/dist/trajectory/parse/index.d.ts +12 -0
  240. package/dist/trajectory/parse/index.js +304 -0
  241. package/dist/trajectory/parse/lammps.d.ts +5 -0
  242. package/dist/trajectory/parse/lammps.js +169 -0
  243. package/dist/trajectory/parse/vasp.d.ts +2 -0
  244. package/dist/trajectory/parse/vasp.js +65 -0
  245. package/dist/trajectory/parse/xyz.d.ts +2 -0
  246. package/dist/trajectory/parse/xyz.js +109 -0
  247. package/dist/trajectory/types.d.ts +11 -0
  248. package/dist/trajectory/types.js +1 -0
  249. package/dist/utils.d.ts +2 -0
  250. package/dist/utils.js +4 -0
  251. package/dist/xrd/XrdPlot.svelte +6 -4
  252. package/dist/xrd/calc-xrd.js +0 -1
  253. package/package.json +30 -24
  254. package/readme.md +4 -4
  255. package/dist/trajectory/parse.d.ts +0 -42
  256. package/dist/trajectory/parse.js +0 -1267
  257. /package/dist/element/{data.json.d.ts → data.json.gz.d.ts} +0 -0
@@ -0,0 +1,16 @@
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+ import type { PhaseData } from '../convex-hull/types';
2
+ import type { ChemPotDiagramConfig, ChemPotHoverInfo } from './types';
3
+ type $$ComponentProps = {
4
+ entries: PhaseData[];
5
+ config?: ChemPotDiagramConfig;
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+ width?: number;
7
+ height?: number;
8
+ temperature?: number;
9
+ interpolate_temperature?: boolean;
10
+ max_interpolation_gap?: number;
11
+ hover_info?: ChemPotHoverInfo | null;
12
+ render_local_tooltip?: boolean;
13
+ };
14
+ declare const ChemPotDiagram3D: import("svelte").Component<$$ComponentProps, {}, "temperature" | "height" | "width" | "hover_info">;
15
+ type ChemPotDiagram3D = ReturnType<typeof ChemPotDiagram3D>;
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+ export default ChemPotDiagram3D;
@@ -0,0 +1,8 @@
1
+ <script lang="ts">// Scene wrapper that enables Threlte pointer events for hover tooltips.
2
+ // Must be rendered inside <Canvas>, mirroring ScatterPlot3DScene / StructureScene pattern.
3
+ import { interactivity } from '@threlte/extras';
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+ let { children } = $props();
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+ interactivity();
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+ </script>
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+
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+ {@render children?.()}
@@ -0,0 +1,7 @@
1
+ import type { Snippet } from 'svelte';
2
+ type $$ComponentProps = {
3
+ children?: Snippet;
4
+ };
5
+ declare const ChemPotScene3D: import("svelte").Component<$$ComponentProps, {}, "">;
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+ type ChemPotScene3D = ReturnType<typeof ChemPotScene3D>;
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+ export default ChemPotScene3D;
@@ -0,0 +1,10 @@
1
+ import { type D3InterpolateName } from '../colors';
2
+ /** Resolve D3 interpolator with optional reverse for chempot color scales. */
3
+ export declare function get_chempot_interpolator(name: D3InterpolateName, reverse: boolean): (t: number) => string;
4
+ /** Build sequential color scale from values and D3 interpolator name. */
5
+ export declare function make_chempot_color_scale(values: number[], interpolator_name: D3InterpolateName, reverse: boolean): ((val: number) => string) | null;
6
+ /** Resolve color bar props for chempot diagrams (interpolator + domain). */
7
+ export declare function get_chempot_color_bar_config(color_scale: D3InterpolateName, reverse: boolean): {
8
+ color_scale_fn: (t: number) => string;
9
+ color_scale_domain: [number, number];
10
+ };
@@ -0,0 +1,33 @@
1
+ import { get_d3_interpolator } from '../colors';
2
+ import { scaleSequential } from 'd3-scale';
3
+ /** Resolve D3 interpolator with optional reverse for chempot color scales. */
4
+ export function get_chempot_interpolator(name, reverse) {
5
+ const raw = get_d3_interpolator(name);
6
+ return reverse ? (t) => raw(1 - t) : raw;
7
+ }
8
+ /** Build sequential color scale from values and D3 interpolator name. */
9
+ export function make_chempot_color_scale(values, interpolator_name, reverse) {
10
+ const finite_values = values.filter(Number.isFinite);
11
+ if (finite_values.length === 0)
12
+ return null;
13
+ let min_value = finite_values[0];
14
+ let max_raw_value = finite_values[0];
15
+ for (let idx = 1; idx < finite_values.length; idx++) {
16
+ if (finite_values[idx] < min_value)
17
+ min_value = finite_values[idx];
18
+ if (finite_values[idx] > max_raw_value)
19
+ max_raw_value = finite_values[idx];
20
+ }
21
+ const max_value = Math.max(max_raw_value, min_value + 1e-6);
22
+ return scaleSequential(get_chempot_interpolator(interpolator_name, reverse)).domain([
23
+ min_value,
24
+ max_value,
25
+ ]);
26
+ }
27
+ /** Resolve color bar props for chempot diagrams (interpolator + domain). */
28
+ export function get_chempot_color_bar_config(color_scale, reverse) {
29
+ return {
30
+ color_scale_fn: get_chempot_interpolator(color_scale, reverse),
31
+ color_scale_domain: [0, 1],
32
+ };
33
+ }
@@ -0,0 +1,38 @@
1
+ import type { PhaseData } from '../convex-hull/types';
2
+ import { type ChemPotDiagramConfig, type ChemPotDiagramData } from './types';
3
+ export declare function get_energy_per_atom(entry: PhaseData): number;
4
+ export declare function formula_key_from_composition(composition: Record<string, number>): string;
5
+ export declare function get_min_entries_and_el_refs(entries: PhaseData[]): {
6
+ min_entries: PhaseData[];
7
+ el_refs: Record<string, PhaseData>;
8
+ };
9
+ export declare function compute_form_energy_per_atom(entry: PhaseData, el_refs: Record<string, PhaseData>): number;
10
+ export declare function best_form_energy_for_formula(entries: PhaseData[], formula: string, el_refs: Record<string, PhaseData>): number | undefined;
11
+ export declare function renormalize_entries(entries: PhaseData[], el_refs: Record<string, PhaseData>, elements: string[]): PhaseData[];
12
+ export declare function build_hyperplanes(min_entries: PhaseData[], el_refs: Record<string, PhaseData>, elements: string[]): {
13
+ hyperplanes: number[][];
14
+ hyperplane_entries: PhaseData[];
15
+ };
16
+ export declare function build_border_hyperplanes(lims: [number, number][]): number[][];
17
+ export declare function compute_domains(hyperplanes: number[][], border_hyperplanes: number[][], hyperplane_entries: PhaseData[], dim: number): Record<string, number[][]>;
18
+ export declare function apply_element_padding(domains: Record<string, number[][]>, elem_indices: number[], padding: number, default_min_limit: number): number[];
19
+ export declare function pad_domain_points(pts: number[][], elem_indices: number[], new_lims: number[], default_min_limit: number, padding: number): number[][];
20
+ export declare function build_axis_ranges(points: number[][], elements: string[]): {
21
+ element: string;
22
+ min_val: number;
23
+ max_val: number;
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+ }[];
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+ export declare function simple_pca(data: number[][], k?: number): {
26
+ scores: number[][];
27
+ eigenvectors: number[][];
28
+ };
29
+ export declare function orthonormal_2d(line_pts: number[][]): [number, number];
30
+ export declare function dedup_points(pts: number[][], tol?: number): {
31
+ unique: number[][];
32
+ orig_indices: number[];
33
+ };
34
+ export declare function get_3d_domain_simplexes_and_ann_loc(points_3d: number[][]): {
35
+ simplex_indices: number[][];
36
+ ann_loc: number[];
37
+ };
38
+ export declare function compute_chempot_diagram(entries: PhaseData[], config?: ChemPotDiagramConfig): ChemPotDiagramData;