matryoshka-rlm 0.2.4 → 0.2.6

package/dist/engine/handle-session.d.ts

@@ -0,0 +1,149 @@
+/**
+ * HandleSession - Handle-based document analysis session
+ *
+ * Wraps NucleusEngine with handle-based persistence for 97%+ token savings.
+ * Query results are stored in SQLite and only handle stubs are returned to the LLM.
+ */
+/**
+ * Result of a handle-based query execution
+ */
+export interface HandleResult {
+    success: boolean;
+    /** Handle reference (e.g., "$res1") if result is an array */
+    handle?: string;
+    /** Handle stub for LLM context (e.g., "$res1: Array(1000) [preview...]") */
+    stub?: string;
+    /** Scalar value if result is not an array */
+    value?: unknown;
+    /** Execution logs */
+    logs: string[];
+    /** Error message if failed */
+    error?: string;
+    /** Inferred type */
+    type?: string;
+}
+/**
+ * Options for expanding a handle
+ */
+export interface ExpandOptions {
+    /** Maximum number of items to return (default: all) */
+    limit?: number;
+    /** Offset for pagination */
+    offset?: number;
+    /** Format: 'full' returns all fields, 'lines' returns just line content */
+    format?: "full" | "lines";
+}
+/**
+ * Result of expanding a handle
+ */
+export interface ExpandResult {
+    success: boolean;
+    data?: unknown[];
+    total?: number;
+    offset?: number;
+    limit?: number;
+    error?: string;
+}
+/**
+ * HandleSession - combines NucleusEngine with handle-based storage
+ */
+export declare class HandleSession {
+    private engine;
+    private db;
+    private registry;
+    private ops;
+    private documentPath;
+    private documentSize;
+    private loadedAt;
+    private lastAccessedAt;
+    private queryCount;
+    constructor();
+    /**
+     * Load a document from file
+     */
+    loadFile(filePath: string): Promise<{
+        lineCount: number;
+        size: number;
+    }>;
+    /**
+     * Load a document from string content
+     */
+    loadContent(content: string, path?: string): {
+        lineCount: number;
+        size: number;
+    };
+    /**
+     * Check if a document is loaded
+     */
+    isLoaded(): boolean;
+    /**
+     * Get document statistics
+     */
+    getStats(): {
+        path: string;
+        lineCount: number;
+        size: number;
+        loadedAt: Date | null;
+    } | null;
+    /**
+     * Execute a Nucleus query and return handle-based result
+     *
+     * Arrays are stored in SQLite and a handle stub is returned.
+     * Scalars are returned directly.
+     */
+    execute(command: string): HandleResult;
+    /**
+     * Expand a handle to get full data
+     *
+     * Use this when the LLM needs to see actual data for decision-making.
+     */
+    expand(handle: string, options?: ExpandOptions): ExpandResult;
+    /**
+     * Get a preview of handle contents (first N items)
+     */
+    preview(handle: string, n?: number): unknown[];
+    /**
+     * Get a random sample from a handle
+     */
+    sample(handle: string, n?: number): unknown[];
+    /**
+     * Describe handle contents (schema + stats)
+     */
+    describe(handle: string): {
+        count: number;
+        fields: string[];
+        sample: unknown[];
+    };
+    /**
+     * Get current handle bindings as stubs
+     */
+    getBindings(): Record<string, string>;
+    /**
+     * Build context string with all handle stubs
+     */
+    buildContext(): string;
+    /**
+     * Reset bindings but keep document loaded
+     */
+    reset(): void;
+    /**
+     * Get session info
+     */
+    getSessionInfo(): {
+        documentPath: string;
+        documentSize: number;
+        loadedAt: Date | null;
+        lastAccessedAt: Date | null;
+        queryCount: number;
+        handleCount: number;
+    };
+    /**
+     * Close the session and free resources
+     */
+    close(): void;
+    /**
+     * Get command reference
+     */
+    static getCommandReference(): string;
+}
+//# sourceMappingURL=handle-session.d.ts.map

package/dist/engine/handle-session.d.ts.map

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package/dist/engine/handle-session.js

@@ -0,0 +1,240 @@
+/**
+ * HandleSession - Handle-based document analysis session
+ *
+ * Wraps NucleusEngine with handle-based persistence for 97%+ token savings.
+ * Query results are stored in SQLite and only handle stubs are returned to the LLM.
+ */
+import { readFile } from "node:fs/promises";
+import { NucleusEngine } from "./nucleus-engine.js";
+import { SessionDB } from "../persistence/session-db.js";
+import { HandleRegistry } from "../persistence/handle-registry.js";
+import { HandleOps } from "../persistence/handle-ops.js";
+/**
+ * HandleSession - combines NucleusEngine with handle-based storage
+ */
+export class HandleSession {
+    engine;
+    db;
+    registry;
+    ops;
+    documentPath = "";
+    documentSize = 0;
+    loadedAt = null;
+    lastAccessedAt = null;
+    queryCount = 0;
+    constructor() {
+        this.engine = new NucleusEngine();
+        this.db = new SessionDB();
+        this.registry = new HandleRegistry(this.db);
+        this.ops = new HandleOps(this.db, this.registry);
+    }
+    /**
+     * Load a document from file
+     */
+    async loadFile(filePath) {
+        const content = await readFile(filePath, "utf-8");
+        return this.loadContent(content, filePath);
+    }
+    /**
+     * Load a document from string content
+     */
+    loadContent(content, path = "<string>") {
+        // Load into NucleusEngine for query execution
+        this.engine.loadContent(content);
+        // Also load into SessionDB for FTS5 search and handle storage
+        const lineCount = this.db.loadDocument(content);
+        this.documentPath = path;
+        this.documentSize = content.length;
+        this.loadedAt = new Date();
+        this.lastAccessedAt = new Date();
+        this.queryCount = 0;
+        return { lineCount, size: content.length };
+    }
+    /**
+     * Check if a document is loaded
+     */
+    isLoaded() {
+        return this.engine.isLoaded();
+    }
+    /**
+     * Get document statistics
+     */
+    getStats() {
+        const engineStats = this.engine.getStats();
+        if (!engineStats)
+            return null;
+        return {
+            path: this.documentPath,
+            lineCount: engineStats.lineCount,
+            size: this.documentSize,
+            loadedAt: this.loadedAt,
+        };
+    }
+    /**
+     * Execute a Nucleus query and return handle-based result
+     *
+     * Arrays are stored in SQLite and a handle stub is returned.
+     * Scalars are returned directly.
+     */
+    execute(command) {
+        this.lastAccessedAt = new Date();
+        this.queryCount++;
+        // Execute via NucleusEngine
+        const result = this.engine.execute(command);
+        if (!result.success) {
+            return {
+                success: false,
+                logs: result.logs,
+                error: result.error,
+                type: result.type,
+            };
+        }
+        // If result is an array, store in handle registry
+        if (Array.isArray(result.value)) {
+            const handle = this.registry.store(result.value);
+            this.registry.setResults(handle);
+            // Get the stub for LLM context
+            const stub = this.registry.getStub(handle);
+            return {
+                success: true,
+                handle,
+                stub,
+                logs: result.logs,
+                type: result.type,
+            };
+        }
+        // Scalar result - return directly
+        return {
+            success: true,
+            value: result.value,
+            logs: result.logs,
+            type: result.type,
+        };
+    }
+    /**
+     * Expand a handle to get full data
+     *
+     * Use this when the LLM needs to see actual data for decision-making.
+     */
+    expand(handle, options = {}) {
+        this.lastAccessedAt = new Date();
+        const data = this.registry.get(handle);
+        if (data === null) {
+            return {
+                success: false,
+                error: `Invalid handle: ${handle}`,
+            };
+        }
+        const total = data.length;
+        const offset = options.offset ?? 0;
+        const limit = options.limit ?? total;
+        // Slice the data
+        let sliced = data.slice(offset, offset + limit);
+        // Format if requested
+        if (options.format === "lines") {
+            sliced = sliced.map((item) => {
+                if (typeof item === "object" && item !== null) {
+                    const obj = item;
+                    // Extract line content
+                    const line = obj.line ?? obj.content ?? obj.text;
+                    if (line !== undefined) {
+                        const lineNum = obj.lineNum ?? obj.lineNumber ?? obj.num;
+                        if (lineNum !== undefined) {
+                            return `[${lineNum}] ${line}`;
+                        }
+                        return String(line);
+                    }
+                }
+                return item;
+            });
+        }
+        return {
+            success: true,
+            data: sliced,
+            total,
+            offset,
+            limit,
+        };
+    }
+    /**
+     * Get a preview of handle contents (first N items)
+     */
+    preview(handle, n = 5) {
+        this.lastAccessedAt = new Date();
+        return this.ops.preview(handle, n);
+    }
+    /**
+     * Get a random sample from a handle
+     */
+    sample(handle, n = 5) {
+        this.lastAccessedAt = new Date();
+        return this.ops.sample(handle, n);
+    }
+    /**
+     * Describe handle contents (schema + stats)
+     */
+    describe(handle) {
+        this.lastAccessedAt = new Date();
+        return this.ops.describe(handle);
+    }
+    /**
+     * Get current handle bindings as stubs
+     */
+    getBindings() {
+        const handles = this.registry.listHandles();
+        const bindings = {};
+        for (const handle of handles) {
+            bindings[handle] = this.registry.getStub(handle);
+        }
+        // Mark current RESULTS
+        const resultsHandle = this.registry.getResults();
+        if (resultsHandle) {
+            bindings["RESULTS"] = `-> ${resultsHandle}`;
+        }
+        return bindings;
+    }
+    /**
+     * Build context string with all handle stubs
+     */
+    buildContext() {
+        return this.registry.buildContext();
+    }
+    /**
+     * Reset bindings but keep document loaded
+     */
+    reset() {
+        // Clear handles
+        const handles = this.registry.listHandles();
+        for (const handle of handles) {
+            this.registry.delete(handle);
+        }
+        // Reset engine state
+        this.engine.reset();
+    }
+    /**
+     * Get session info
+     */
+    getSessionInfo() {
+        return {
+            documentPath: this.documentPath,
+            documentSize: this.documentSize,
+            loadedAt: this.loadedAt,
+            lastAccessedAt: this.lastAccessedAt,
+            queryCount: this.queryCount,
+            handleCount: this.registry.listHandles().length,
+        };
+    }
+    /**
+     * Close the session and free resources
+     */
+    close() {
+        this.db.close();
+    }
+    /**
+     * Get command reference
+     */
+    static getCommandReference() {
+        return NucleusEngine.getCommandReference();
+    }
+}
+//# sourceMappingURL=handle-session.js.map

package/dist/engine/handle-session.js.map

@@ -0,0 +1 @@
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package/dist/engine/nucleus-engine.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"nucleus-engine.d.ts","sourceRoot":"","sources":["../../src/engine/nucleus-engine.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAOH;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,OAAO,CAAC;IACjB,KAAK,EAAE,OAAO,CAAC;IACf,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,6BAA6B;IAC7B,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAqGD;;;;;;;;;;;;;;GAcG;AACH,qBAAa,aAAa;IACxB,OAAO,CAAC,OAAO,CAAc;IAC7B,OAAO,CAAC,QAAQ,CAAuB;IACvC,OAAO,CAAC,WAAW,CAA4B;IAC/C,OAAO,CAAC,OAAO,CAAU;IACzB,OAAO,CAAC,WAAW,CAAa;gBAEpB,OAAO,GAAE,oBAAyB;IAI9C;;OAEG;IACG,QAAQ,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAK/C;;OAEG;IACH,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI;IAYlC;;OAEG;IACH,QAAQ,IAAI,OAAO;IAInB;;OAEG;IACH,QAAQ,IAAI;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI;IAMxD;;;;;OAKG;IACH,OAAO,CAAC,OAAO,EAAE,MAAM,GAAG,eAAe;IAyEzC;;;;;OAKG;IACH,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,eAAe,EAAE;IAIjD;;OAEG;IACH,WAAW,IAAI,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;IAatC;;OAEG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAIjC;;OAEG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,GAAG,IAAI;IAI9C;;OAEG;IACH,KAAK,IAAI,IAAI;IAQb;;OAEG;IACH,UAAU,IAAI,MAAM;IAIpB;;OAEG;IACH,MAAM,CAAC,mBAAmB,IAAI,MAAM;CAgDrC;AAED;;GAEG;AACH,wBAAsB,YAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,oBAAoB,GAAG,OAAO,CAAC,aAAa,CAAC,CAI3G;AAED;;GAEG;AACH,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,oBAAoB,GAAG,aAAa,CAItG"}

package/dist/engine/nucleus-engine.js

@@ -316,10 +316,13 @@ SYNTHESIS:
   (synthesize (example "in1" out1) (example "in2" out2) ...)
                                 Synthesize function from examples
 
-VARIABLES:
+VARIABLES (for use in queries):
   RESULTS                       Last array result (auto-bound)
   _1, _2, _3, ...              Results from turn N (auto-bound)
   context                       Raw document content
+
+NOTE: $res1, $res2, etc. are handle stubs for lattice_expand only.
+      Use RESULTS or _1, _2, _3 to reference previous results in queries.
 `;
     }
 }

package/dist/engine/nucleus-engine.js.map

@@ -1 +1 @@
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package/dist/lattice-mcp-server.d.ts

@@ -1,20 +1,25 @@
 #!/usr/bin/env node
 /**
- * Lattice MCP Server
+ * Lattice MCP Server - Handle-Based Document Analysis
  *
- * A stateful document analysis tool for LLM agents with session lifecycle management.
- * Uses Nucleus S-expression syntax for queries.
+ * A stateful document analysis tool that achieves 97%+ token savings by
+ * storing results in SQLite and returning only handle references to the LLM.
+ *
+ * KEY CONCEPT:
+ * - Query results are stored server-side, LLM sees only compact stubs
+ * - Use lattice_expand when you need to see actual data for decision-making
+ * - Chain operations via RESULTS without transferring full datasets
  *
  * SESSION LIFECYCLE:
  * - Sessions auto-expire after inactivity (default: 10 minutes)
  * - Loading a new document closes the previous session
  * - Explicit lattice_close tool for cleanup
- * - Memory is freed when session ends
  *
  * Usage:
  *   1. lattice_load - Load a document (starts session)
- *   2. lattice_query - Run queries (resets inactivity timer)
- *   3. lattice_close - Explicitly end session (or wait for timeout)
+ *   2. lattice_query - Run queries (returns handle stubs, not full data)
+ *   3. lattice_expand - Get full data when you need to inspect results
+ *   4. lattice_close - End session
  */
 export {};
 //# sourceMappingURL=lattice-mcp-server.d.ts.map

package/dist/lattice-mcp-server.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"lattice-mcp-server.d.ts","sourceRoot":"","sources":["../src/lattice-mcp-server.ts"],"names":[],"mappings":";AACA;;;;;;;;;;;;;;;;GAgBG"}
+{"version":3,"file":"lattice-mcp-server.d.ts","sourceRoot":"","sources":["../src/lattice-mcp-server.ts"],"names":[],"mappings":";AACA;;;;;;;;;;;;;;;;;;;;;GAqBG"}

package/dist/lattice-mcp-server.js

@@ -1,29 +1,35 @@
 #!/usr/bin/env node
 /**
- * Lattice MCP Server
+ * Lattice MCP Server - Handle-Based Document Analysis
  *
- * A stateful document analysis tool for LLM agents with session lifecycle management.
- * Uses Nucleus S-expression syntax for queries.
+ * A stateful document analysis tool that achieves 97%+ token savings by
+ * storing results in SQLite and returning only handle references to the LLM.
+ *
+ * KEY CONCEPT:
+ * - Query results are stored server-side, LLM sees only compact stubs
+ * - Use lattice_expand when you need to see actual data for decision-making
+ * - Chain operations via RESULTS without transferring full datasets
  *
  * SESSION LIFECYCLE:
  * - Sessions auto-expire after inactivity (default: 10 minutes)
  * - Loading a new document closes the previous session
  * - Explicit lattice_close tool for cleanup
- * - Memory is freed when session ends
  *
  * Usage:
  *   1. lattice_load - Load a document (starts session)
- *   2. lattice_query - Run queries (resets inactivity timer)
- *   3. lattice_close - Explicitly end session (or wait for timeout)
+ *   2. lattice_query - Run queries (returns handle stubs, not full data)
+ *   3. lattice_expand - Get full data when you need to inspect results
+ *   4. lattice_close - End session
  */
 import { Server } from "@modelcontextprotocol/sdk/server/index.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
 import { CallToolRequestSchema, ListToolsRequestSchema, } from "@modelcontextprotocol/sdk/types.js";
-import { NucleusEngine } from "./engine/nucleus-engine.js";
+import { HandleSession } from "./engine/handle-session.js";
 import { getVersion } from "./version.js";
 // Configuration
 const SESSION_TIMEOUT_MS = 10 * 60 * 1000; // 10 minutes
 const MAX_DOCUMENT_SIZE = 50 * 1024 * 1024; // 50MB limit
+// Session state
 let session = null;
 let timeoutHandle = null;
 function resetInactivityTimer() {
@@ -39,11 +45,14 @@ function resetInactivityTimer() {
 }
 function closeSession(reason) {
     if (session) {
-        const duration = Date.now() - session.loadedAt.getTime();
+        const info = session.getSessionInfo();
+        const duration = info.loadedAt ? Date.now() - info.loadedAt.getTime() : 0;
         console.error(`[Lattice] Session closed: ${reason} | ` +
-            `Document: ${session.documentPath} | ` +
+            `Document: ${info.documentPath} | ` +
             `Duration: ${Math.round(duration / 1000)}s | ` +
-            `Queries: ${session.queryCount}`);
+            `Queries: ${info.queryCount} | ` +
+            `Handles: ${info.handleCount}`);
+        session.close();
         session = null;
     }
     if (timeoutHandle) {
@@ -55,17 +64,19 @@ function getSessionInfo() {
     if (!session) {
         return "No active session";
     }
+    const info = session.getSessionInfo();
     const now = new Date();
-    const age = Math.round((now.getTime() - session.loadedAt.getTime()) / 1000);
-    const idle = Math.round((now.getTime() - session.lastAccessedAt.getTime()) / 1000);
+    const age = info.loadedAt ? Math.round((now.getTime() - info.loadedAt.getTime()) / 1000) : 0;
+    const idle = info.lastAccessedAt ? Math.round((now.getTime() - info.lastAccessedAt.getTime()) / 1000) : 0;
     const timeout = Math.round((SESSION_TIMEOUT_MS - idle * 1000) / 1000);
     return `Session active:
-  Document: ${session.documentPath}
-  Size: ${(session.documentSize / 1024).toFixed(1)} KB
+  Document: ${info.documentPath}
+  Size: ${(info.documentSize / 1024).toFixed(1)} KB
   Age: ${age}s
   Idle: ${idle}s
   Timeout in: ${Math.max(0, timeout)}s
-  Queries: ${session.queryCount}`;
+  Queries: ${info.queryCount}
+  Active handles: ${info.handleCount}`;
 }
 const TOOLS = [
     {
@@ -78,15 +89,17 @@ RECOMMENDED WORKFLOW:
 3. Use Lattice for large files (>500 lines) - saves 80%+ tokens
 4. Chain queries: grep → filter → count/sum
 
+HOW HANDLES WORK:
+- Query results are stored server-side in SQLite
+- You receive a compact stub like "$res1: Array(1000) [preview...]"
+- Use lattice_expand to see full data when you need to make decisions
+- This saves 97%+ tokens compared to returning full results
+
 EFFICIENT QUERY PATTERNS:
 - Start broad: (grep "ERROR") to find all errors
 - Then narrow: (filter RESULTS (lambda x (match x "timeout" 0)))
 - Finally aggregate: (count RESULTS) or (sum RESULTS)
-
-TOKEN EFFICIENCY:
-- Results show preview (first 20 items), not full data
-- Use (count RESULTS) to get totals without listing all
-- Chain operations to refine without re-reading
+- Inspect when needed: use lattice_expand with limit
 
 SESSION: Document stays loaded for ${SESSION_TIMEOUT_MS / 60000} minutes.
 Call lattice_close when done.`,
@@ -105,28 +118,37 @@ Call lattice_close when done.`,
         name: "lattice_query",
         description: `Execute a Nucleus query on the loaded document.
 
-SEARCH (returns matches bound to RESULTS):
-  (grep "pattern")              Regex search - finds all matching lines
+RETURNS HANDLE STUBS (not full data):
+- Array results return a handle like "$res1: Array(500) [preview...]"
+- Scalar results (count, sum) return the value directly
+- Use lattice_expand when you need to see the actual data
+
+SEARCH (returns handle to matches):
+  (grep "pattern")              Regex search - returns handle to matching lines
   (fuzzy_search "query" 10)     Fuzzy search - top N matches by relevance
   (lines 10 20)                 Get specific line range
 
-AGGREGATE (returns scalar, RESULTS unchanged):
-  (count RESULTS)               Count items
-  (sum RESULTS)                 Sum numbers (auto-extracts from $1,234 format)
+AGGREGATE (returns scalar directly):
+  (count RESULTS)               Count items in current results
+  (sum RESULTS)                 Sum numeric values (auto-extracts from $1,234 format)
 
-TRANSFORM (returns new array, updates RESULTS):
+TRANSFORM (returns new handle):
   (filter RESULTS (lambda x (match x "pattern" 0)))
   (map RESULTS (lambda x (match x "(\\d+)" 1)))
 
 EXTRACT:
   (match str "pattern" 1)       Extract regex group from string
 
-EFFICIENT WORKFLOW:
-1. (grep "ERROR")                    → Find all errors
-2. (filter RESULTS ...)              → Narrow down
-3. (count RESULTS) or (sum RESULTS)  → Get final answer
+EXAMPLE WORKFLOW:
+1. (grep "ERROR")                    → Returns: $res1: Array(500) [preview]
+2. (filter RESULTS (lambda x ...))   → Returns: $res2: Array(50) [preview]
+3. (count RESULTS)                   → Returns: 50
+4. lattice_expand $res2 limit=10     → See 10 actual error messages
 
-Results are bound to RESULTS. Each turn also saves to _1, _2, etc.`,
+VARIABLE BINDING:
+- RESULTS: Always points to the last array result (use in queries)
+- _1, _2, _3, ...: Results from turn N (use in queries for older results)
+- $res1, $res2, ...: Handle stubs (use ONLY with lattice_expand, NOT in queries)`,
         inputSchema: {
             type: "object",
             properties: {
@@ -138,6 +160,52 @@ Results are bound to RESULTS. Each turn also saves to _1, _2, etc.`,
             required: ["command"],
         },
     },
+    {
+        name: "lattice_expand",
+        description: `Get full data from a handle when you need to inspect actual results.
+
+USE THIS WHEN:
+- You need to see actual content to make decisions
+- You want to verify what's in a result set
+- You need to extract specific data for your response
+
+PARAMETERS:
+- handle: The handle reference (e.g., "$res1")
+- limit: Max items to return (default: all) - use for large result sets
+- offset: Skip first N items (for pagination)
+- format: "full" (default) or "lines" (just line content with numbers)
+
+EXAMPLES:
+  lattice_expand $res1                    → Full data from handle
+  lattice_expand $res1 limit=10           → First 10 items only
+  lattice_expand $res1 offset=10 limit=10 → Items 11-20 (pagination)
+  lattice_expand $res1 format=lines       → "[1] line content..." format
+
+TIP: Start with a small limit to preview, then expand more if needed.`,
+        inputSchema: {
+            type: "object",
+            properties: {
+                handle: {
+                    type: "string",
+                    description: 'Handle reference to expand (e.g., "$res1")',
+                },
+                limit: {
+                    type: "number",
+                    description: "Maximum number of items to return (default: all)",
+                },
+                offset: {
+                    type: "number",
+                    description: "Number of items to skip (for pagination)",
+                },
+                format: {
+                    type: "string",
+                    enum: ["full", "lines"],
+                    description: '"full" for complete objects, "lines" for readable line format',
+                },
+            },
+            required: ["handle"],
+        },
+    },
     {
         name: "lattice_close",
         description: "Close the current session and free memory. " +
@@ -151,7 +219,7 @@ Results are bound to RESULTS. Each turn also saves to _1, _2, etc.`,
     },
     {
         name: "lattice_status",
-        description: "Get current session status including document info, memory usage, and timeout.",
+        description: "Get current session status including document info, active handles, and timeout.",
         inputSchema: {
             type: "object",
             properties: {},
@@ -160,7 +228,14 @@ Results are bound to RESULTS. Each turn also saves to _1, _2, etc.`,
     },
     {
         name: "lattice_bindings",
-        description: "Show current variable bindings (RESULTS, _1, _2, etc).",
+        description: `Show current handle bindings.
+
+Returns all active handles with their stubs:
+  $res1: Array(500) [preview of first item...]
+  $res2: Array(50) [preview...]
+  RESULTS: -> $res2
+
+Use this to see what data you have available before deciding what to expand.`,
         inputSchema: {
             type: "object",
             properties: {},
@@ -169,7 +244,7 @@ Results are bound to RESULTS. Each turn also saves to _1, _2, etc.`,
     },
     {
         name: "lattice_reset",
-        description: "Reset variable bindings but keep document loaded.",
+        description: "Clear all handles and bindings but keep the document loaded. Use this to start fresh analysis.",
         inputSchema: {
             type: "object",
             properties: {},
@@ -186,33 +261,58 @@ Results are bound to RESULTS. Each turn also saves to _1, _2, etc.`,
         },
     },
 ];
-function formatResult(result) {
+function formatHandleResult(result) {
     if (!result.success) {
         return `Error: ${result.error}`;
     }
-    const value = result.value;
-    if (Array.isArray(value)) {
-        const preview = value.slice(0, 20).map((item) => {
-            if (typeof item === "object" && item !== null && "line" in item) {
-                const gr = item;
-                return `[${gr.lineNum}] ${gr.line.slice(0, 100)}`;
-            }
-            return JSON.stringify(item).slice(0, 100);
-        });
-        let text = `Found ${value.length} results:\n${preview.join("\n")}`;
-        if (value.length > 20) {
-            text += `\n... and ${value.length - 20} more`;
-        }
+    // If we have a handle (array result), return the stub
+    if (result.handle && result.stub) {
+        let text = result.stub;
         text += "\n\nChain with (count RESULTS), (filter RESULTS ...), (map RESULTS ...), etc.";
+        text += "\nUse lattice_expand to see full data when needed.";
         return text;
     }
-    if (typeof value === "number") {
-        return `Result: ${value.toLocaleString()}`;
+    // Scalar result
+    if (typeof result.value === "number") {
+        return `Result: ${result.value.toLocaleString()}`;
     }
-    if (typeof value === "string") {
-        return value;
+    if (typeof result.value === "string") {
+        return result.value;
     }
-    return JSON.stringify(value, null, 2);
+    return JSON.stringify(result.value, null, 2);
+}
+function formatExpandResult(result) {
+    if (!result.success) {
+        return `Error: ${result.error}`;
+    }
+    const data = result.data;
+    let text = `Showing ${data.length} of ${result.total} items`;
+    if (result.offset && result.offset > 0) {
+        text += ` (offset: ${result.offset})`;
+    }
+    text += ":\n\n";
+    for (const item of data) {
+        if (typeof item === "string") {
+            text += item + "\n";
+        }
+        else if (typeof item === "object" && item !== null) {
+            const obj = item;
+            // Format nicely for line-based results
+            if ("lineNum" in obj && "line" in obj) {
+                text += `[${obj.lineNum}] ${obj.line}\n`;
+            }
+            else if ("lineNum" in obj && "content" in obj) {
+                text += `[${obj.lineNum}] ${obj.content}\n`;
+            }
+            else {
+                text += JSON.stringify(item) + "\n";
+            }
+        }
+        else {
+            text += JSON.stringify(item) + "\n";
+        }
+    }
+    return text;
 }
 async function handleToolCall(name, args) {
     try {
@@ -226,32 +326,21 @@ async function handleToolCall(name, args) {
                 if (session) {
                     closeSession("new document loaded");
                 }
-                // Create new engine and load
-                const engine = new NucleusEngine();
-                await engine.loadFile(filePath);
-                const stats = engine.getStats();
-                if (!stats) {
-                    return { content: [{ type: "text", text: "Error: Failed to get document stats" }] };
-                }
+                // Create new session
+                session = new HandleSession();
+                const stats = await session.loadFile(filePath);
                 // Check size limit
-                if (stats.length > MAX_DOCUMENT_SIZE) {
+                if (stats.size > MAX_DOCUMENT_SIZE) {
+                    session.close();
+                    session = null;
                     return {
                         content: [{
                                 type: "text",
-                                text: `Error: Document too large (${(stats.length / 1024 / 1024).toFixed(1)}MB). ` +
+                                text: `Error: Document too large (${(stats.size / 1024 / 1024).toFixed(1)}MB). ` +
                                     `Maximum size is ${MAX_DOCUMENT_SIZE / 1024 / 1024}MB.`,
                             }],
                     };
                 }
-                // Create session
-                session = {
-                    engine,
-                    documentPath: filePath,
-                    documentSize: stats.length,
-                    loadedAt: new Date(),
-                    lastAccessedAt: new Date(),
-                    queryCount: 0,
-                };
                 // Start inactivity timer
                 resetInactivityTimer();
                 console.error(`[Lattice] Session started: ${filePath} (${stats.lineCount} lines)`);
@@ -260,8 +349,10 @@ async function handleToolCall(name, args) {
                             type: "text",
                             text: `Loaded ${filePath}:\n` +
                                 `  Lines: ${stats.lineCount.toLocaleString()}\n` +
-                                `  Size: ${(stats.length / 1024).toFixed(1)} KB\n` +
+                                `  Size: ${(stats.size / 1024).toFixed(1)} KB\n` +
                                 `  Session timeout: ${SESSION_TIMEOUT_MS / 60000} minutes\n\n` +
+                                `Results will be returned as handle stubs (97%+ token savings).\n` +
+                                `Use lattice_expand to see full data when needed.\n\n` +
                                 `Ready for queries. Call lattice_close when done.`,
                         }],
                 };
@@ -279,20 +370,39 @@ async function handleToolCall(name, args) {
                 if (!command) {
                     return { content: [{ type: "text", text: "Error: command is required" }] };
                 }
-                // Update session
-                session.lastAccessedAt = new Date();
-                session.queryCount++;
                 resetInactivityTimer();
-                const result = session.engine.execute(command);
-                return { content: [{ type: "text", text: formatResult(result) }] };
+                const result = session.execute(command);
+                return { content: [{ type: "text", text: formatHandleResult(result) }] };
+            }
+            case "lattice_expand": {
+                if (!session) {
+                    return {
+                        content: [{
+                                type: "text",
+                                text: "Error: No active session. Use lattice_load first.",
+                            }],
+                    };
+                }
+                const handle = args.handle;
+                if (!handle) {
+                    return { content: [{ type: "text", text: "Error: handle is required" }] };
+                }
+                resetInactivityTimer();
+                const result = session.expand(handle, {
+                    limit: args.limit,
+                    offset: args.offset,
+                    format: args.format,
+                });
+                return { content: [{ type: "text", text: formatExpandResult(result) }] };
             }
             case "lattice_close": {
                 if (!session) {
                     return { content: [{ type: "text", text: "No active session to close." }] };
                 }
-                const info = `Closed session for ${session.documentPath} (${session.queryCount} queries)`;
+                const info = session.getSessionInfo();
+                const summary = `Closed session for ${info.documentPath} (${info.queryCount} queries, ${info.handleCount} handles)`;
                 closeSession("explicit close");
-                return { content: [{ type: "text", text: info }] };
+                return { content: [{ type: "text", text: summary }] };
             }
             case "lattice_status": {
                 return { content: [{ type: "text", text: getSessionInfo() }] };
@@ -301,10 +411,8 @@ async function handleToolCall(name, args) {
                 if (!session) {
                     return { content: [{ type: "text", text: "No active session." }] };
                 }
-                // Update access time
-                session.lastAccessedAt = new Date();
                 resetInactivityTimer();
-                const bindings = session.engine.getBindings();
+                const bindings = session.getBindings();
                 if (Object.keys(bindings).length === 0) {
                     return { content: [{ type: "text", text: "No bindings yet. Run a query first." }] };
                 }
@@ -312,7 +420,7 @@ async function handleToolCall(name, args) {
                 return {
                     content: [{
                             type: "text",
-                            text: `Current bindings:\n${lines.join("\n")}`,
+                            text: `Current bindings:\n${lines.join("\n")}\n\nUse lattice_expand <handle> to see full data.`,
                         }],
                 };
             }
@@ -320,14 +428,13 @@ async function handleToolCall(name, args) {
                 if (!session) {
                     return { content: [{ type: "text", text: "No active session." }] };
                 }
-                session.engine.reset();
-                session.lastAccessedAt = new Date();
+                session.reset();
                 resetInactivityTimer();
-                return { content: [{ type: "text", text: "Bindings reset. Document still loaded." }] };
+                return { content: [{ type: "text", text: "Bindings and handles cleared. Document still loaded." }] };
             }
             case "lattice_help": {
                 return {
-                    content: [{ type: "text", text: NucleusEngine.getCommandReference() }],
+                    content: [{ type: "text", text: HandleSession.getCommandReference() }],
                 };
             }
             default:
@@ -371,9 +478,10 @@ async function main() {
     });
     const transport = new StdioServerTransport();
     await server.connect(transport);
-    console.error("[Lattice] MCP server started");
+    console.error("[Lattice] MCP server started (handle-based mode)");
     console.error(`[Lattice] Session timeout: ${SESSION_TIMEOUT_MS / 1000}s`);
     console.error(`[Lattice] Max document size: ${MAX_DOCUMENT_SIZE / 1024 / 1024}MB`);
+    console.error("[Lattice] Query results return handle stubs for 97%+ token savings");
 }
 main().catch((err) => {
     console.error("[Lattice] Fatal error:", err);

package/dist/lattice-mcp-server.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "matryoshka-rlm",
-  "version": "0.2.4",
+  "version": "0.2.6",
   "type": "module",
   "description": "Recursive Language Model - Process documents larger than LLM context windows",
   "main": "dist/lib.js",
@@ -82,14 +82,15 @@
     "@modelcontextprotocol/sdk": "^1.0.0",
     "@types/better-sqlite3": "^7.6.13",
     "better-sqlite3": "^12.6.2",
+    "matryoshka-rlm": "^0.2.5",
     "ramo": "^0.1.2"
   },
   "devDependencies": {
     "@types/node": "^22.0.0",
-    "@vitest/coverage-v8": "^2.1.0",
+    "@vitest/coverage-v8": "^4.0.17",
     "tsx": "^4.19.0",
     "typescript": "^5.6.0",
-    "vitest": "^2.1.0"
+    "vitest": "^4.0.17"
   },
   "engines": {
     "node": ">=20.0.0"