matryoshka-rlm 0.2.38 → 0.2.39

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. package/dist/persistence/session-db.d.ts +28 -37
  2. package/dist/persistence/session-db.d.ts.map +1 -1
  3. package/dist/persistence/session-db.js +194 -97
  4. package/dist/persistence/session-db.js.map +1 -1
  5. package/package.json +3 -3
package/dist/persistence/session-db.d.ts CHANGED
@@ -2,10 +2,13 @@
2
2
  * SessionDB - In-memory SQLite database for session state
3
3
  *
4
4
  * Provides:
5
- * - FTS5 full-text search for document lines
5
+ * - FTS4 full-text search for document lines
6
6
  * - Handle storage for result sets
7
7
  * - Checkpoint persistence for session resume
8
8
  * - Symbol storage for tree-sitter extracted symbols
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+ *
10
+ * Uses sql.js (WASM-based SQLite, zero native dependencies) instead of
11
+ * better-sqlite3 to avoid the deprecated prebuild-install dependency.
9
12
  */
10
13
  import type { Symbol, SymbolKind } from "../treesitter/types.js";
11
14
  export interface DocumentLine {
@@ -41,28 +44,39 @@ export declare class SessionDB {
41
44
  private lastLoadStatus;
42
45
  /** Tracks usage count per slug base for collision disambiguation */
43
46
  private slugCounts;
47
+ private bm25Lines;
48
+ private bm25Index;
44
49
  constructor();
45
50
  private initSchema;
46
51
  /**
47
52
  * Check if database is open
48
53
  */
49
54
  isOpen(): boolean;
55
+ /** Number of cached prepared statements (for tests / observability). */
56
+ preparedStatementCount(): number;
50
57
  /**
51
58
  * Get list of tables in database
52
59
  */
53
60
  getTables(): string[];
54
61
  /**
55
- * Check if FTS5 virtual table exists
62
+ * Check if the FTS virtual table exists.
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+ *
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+ * Note: under sql.js the table is FTS4, not FTS5 (sql.js doesn't ship FTS5).
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+ * The name is kept for backwards-compatibility with existing callers.
56
66
  */
67
+ hasFTSTable(): boolean;
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+ /** @deprecated Use hasFTSTable() — kept for backwards compatibility. */
57
69
  hasFTS5(): boolean;
58
70
  /**
59
- * Load document content into the database
71
+ * Load document content into the database.
72
+ *
73
+ * FTS4 external-content tables need a manual index rebuild after the
74
+ * content table is modified, unlike FTS5 triggers. We run the rebuild
75
+ * inside the same atomic transaction so readers never see a stale index.
60
76
  */
61
77
  loadDocument(content: string): number;
62
78
  /**
63
79
  * Truncation metadata from the most recent loadDocument() call.
64
- * Callers can use this to warn the user when a downstream query
65
- * may be operating on incomplete data.
66
80
  */
67
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  getLastLoadStatus(): LoadStatus;
68
82
  /**
@@ -74,50 +88,36 @@ export declare class SessionDB {
74
88
  */
75
89
  getLineCount(): number;
76
90
  /**
77
- * Search document using FTS5
91
+ * Search document using FTS (sanitizes user input)
78
92
  */
79
93
  search(query: string): DocumentLine[];
80
94
  /**
81
- * Search with a raw FTS5 query (for trusted internal callers only)
95
+ * Search with a raw FTS query (for trusted internal callers only)
82
96
  * WARNING: Do not pass user input directly to this method
83
97
  */
84
98
  searchRaw(query: string): DocumentLine[];
85
99
  /**
86
- * Search with FTS5 BM25 relevance ranking (server-side scoring)
100
+ * Search with BM25 relevance ranking.
101
+ *
102
+ * sql.js bundles FTS3/4 but not FTS5, and FTS4's matchinfo() doesn't give
103
+ * us a real ranker out of the box. We score in JS using the BM25 index
104
+ * that's lazily built from the line cache populated by loadDocument().
87
105
  */
88
106
  searchByRelevance(query: string): DocumentLine[];
89
107
  /**
90
108
  * Generate a unique handle name for a slug.
91
- *
92
- * Increments the per-slug counter and checks the candidate name against
93
- * existing handles in SQLite. If a cross-slug collision is detected
94
- * (e.g. slug "grep_error" count=2 produces "$grep_error_2" which was
95
- * already taken by slug "grep_error_2" count=1), keeps incrementing
96
- * until a free name is found.
97
109
  */
98
110
  private nextUniqueHandle;
99
111
  /**
100
112
  * Create a handle for storing data array.
101
- *
102
- * @param data The array payload to store.
103
- * @param command Optional Nucleus command string used to derive a
104
- * descriptive handle name (e.g. `(grep "ERROR")` → `$grep_error`).
105
- * Falls back to `$res`, `$res_2`, … when omitted.
106
113
  */
107
114
  createHandle(data: unknown[], command?: string): string;
108
115
  /**
109
116
  * Create a memo handle for storing arbitrary context.
110
- * Uses $memo prefix and "memo" type to distinguish from query result handles.
111
- *
112
- * @param data The array payload to store.
113
- * @param label Optional label used to derive a descriptive handle name
114
- * (e.g., "auth architecture" → `$memo_auth_architecture`).
115
- * Falls back to `$memo`, `$memo_2`, … when omitted.
116
117
  */
117
118
  createMemoHandle(data: unknown[], label?: string): string;
118
119
  /**
119
120
  * Delete all non-memo handles (query result handles)
120
- * Preserves memo handles across document reloads
121
121
  */
122
122
  clearQueryHandles(): void;
123
123
  /**
@@ -125,7 +125,7 @@ export declare class SessionDB {
125
125
  */
126
126
  getHandleMetadata(handle: string): HandleMetadata | null;
127
127
  /**
128
- * Get a slice of data stored in a handle (avoids loading all rows)
128
+ * Get a slice of data stored in a handle
129
129
  */
130
130
  getHandleDataSlice(handle: string, limit: number, offset?: number): unknown[];
131
131
  /**
@@ -142,15 +142,6 @@ export declare class SessionDB {
142
142
  handleCount(): number;
143
143
  /**
144
144
  * Get the total byte size of a handle's stored JSON rows.
145
- *
146
- * Sums `length(data)` over the handle_data rows in a single SQL query,
147
- * so callers can estimate token costs without re-serializing the whole
148
- * array on the JS side. The data is already JSON-stringified in SQLite
149
- * (see `createHandle`), so this is the authoritative serialized size
150
- * minus the JSON array brackets and commas that would wrap it — close
151
- * enough for a token-cost estimate.
152
- *
153
- * Returns 0 for unknown handles.
154
145
  */
155
146
  getHandleDataByteSize(handle: string): number;
156
147
  /**
@@ -166,7 +157,7 @@ export declare class SessionDB {
166
157
  */
167
158
  saveCheckpoint(turn: number, bindings: Map<string, string>): void;
168
159
  /**
169
- * Get a checkpoint
160
+ * Get a checkpoint timestamp
170
161
  */
171
162
  getCheckpointTimestamp(turn: number): number | null;
172
163
  getCheckpoint(turn: number): Map<string, string> | null;
package/dist/persistence/session-db.d.ts.map CHANGED
@@ -1 +1 @@
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1
+ {"version":3,"file":"session-db.d.ts","sourceRoot":"","sources":["../../src/persistence/session-db.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAGH,OAAO,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AAuKjE,MAAM,WAAW,YAAY;IAC3B,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,aAAa,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAuCtD;AAED,MAAM,WAAW,UAAU;IACzB,SAAS,EAAE,OAAO,CAAC;IACnB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,WAAW,EAAE,MAAM,CAAC;CACrB;AAMD,qBAAa,SAAS;IACpB,OAAO,CAAC,EAAE,CAAmB;IAC7B,OAAO,CAAC,cAAc,CAAoD;IAC1E,oEAAoE;IACpE,OAAO,CAAC,UAAU,CAAkC;IAKpD,OAAO,CAAC,SAAS,CAAyB;IAC1C,OAAO,CAAC,SAAS,CAA0B;;IAQ3C,OAAO,CAAC,UAAU;IA2DlB;;OAEG;IACH,MAAM,IAAI,OAAO;IAIjB,wEAAwE;IACxE,sBAAsB,IAAI,MAAM;IAIhC;;OAEG;IACH,SAAS,IAAI,MAAM,EAAE;IAWrB;;;;;OAKG;IACH,WAAW,IAAI,OAAO;IAUtB,wEAAwE;IACxE,OAAO,IAAI,OAAO;IAIlB;;;;;;OAMG;IACH,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM;IAqErC;;OAEG;IACH,iBAAiB,IAAI,UAAU;IAI/B;;OAEG;IACH,QAAQ,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,YAAY,EAAE;IAgBpD;;OAEG;IACH,YAAY,IAAI,MAAM;IAOtB;;OAEG;IACH,MAAM,CAAC,KAAK,EAAE,MAAM,GAAG,YAAY,EAAE;IAWrC;;;OAGG;IACH,SAAS,CAAC,KAAK,EAAE,MAAM,GAAG,YAAY,EAAE;IAsBxC;;;;;;OAMG;IACH,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,YAAY,EAAE;IAchD;;OAEG;IACH,OAAO,CAAC,gBAAgB;IAcxB;;OAEG;IACH,YAAY,CAAC,IAAI,EAAE,OAAO,EAAE,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM;IAoCvD;;OAEG;IACH,gBAAgB,CAAC,IAAI,EAAE,OAAO,EAAE,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,MAAM;IA+CzD;;OAEG;IACH,iBAAiB,IAAI,IAAI;IAKzB;;OAEG;IACH,iBAAiB,CAAC,MAAM,EAAE,MAAM,GAAG,cAAc,GAAG,IAAI;IAUxD;;OAEG;IACH,kBAAkB,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAE,MAAU,GAAG,OAAO,EAAE;IA2BhF;;OAEG;IACH,aAAa,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,EAAE;IAsBxC;;OAEG;IACH,WAAW,IAAI,MAAM,EAAE;IAQvB;;OAEG;IACH,WAAW,IAAI,MAAM;IAOrB;;OAEG;IACH,qBAAqB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM;IAS7C;;OAEG;IACH,kBAAkB,IAAI,cAAc,EAAE;IAOtC;;OAEG;IACH,YAAY,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI;IAMlC;;OAEG;IACH,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI;IAiBjE;;OAEG;IACH,sBAAsB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAOnD,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI;IAkBvD;;OAEG;IACH,kBAAkB,IAAI,MAAM,EAAE;IAQ9B;;OAEG;IACH,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI;IAOpC;;OAEG;IACH,gBAAgB,IAAI,IAAI;IASxB;;;OAGG;IACH,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,GAAG,MAAM;IA8C/C;;OAEG;IACH,SAAS,CAAC,EAAE,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAWpC;;OAEG;IACH,aAAa,IAAI,MAAM,EAAE;IAUzB;;OAEG;IACH,gBAAgB,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,EAAE;IAU5C;;OAEG;IACH,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE;IAYxC;;OAEG;IACH,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAU7C;;OAEG;IACH,YAAY,IAAI,IAAI;IAKpB;;OAEG;IACH,QAAQ,IAAI,IAAI;IAahB;;OAEG;IACH,KAAK,IAAI,IAAI;CAMd"}
package/dist/persistence/session-db.js CHANGED
@@ -2,12 +2,135 @@
2
2
  * SessionDB - In-memory SQLite database for session state
3
3
  *
4
4
  * Provides:
5
- * - FTS5 full-text search for document lines
5
+ * - FTS4 full-text search for document lines
6
6
  * - Handle storage for result sets
7
7
  * - Checkpoint persistence for session resume
8
8
  * - Symbol storage for tree-sitter extracted symbols
9
+ *
10
+ * Uses sql.js (WASM-based SQLite, zero native dependencies) instead of
11
+ * better-sqlite3 to avoid the deprecated prebuild-install dependency.
12
+ */
13
+ import initSqlJs from "sql.js";
14
+ import { buildBM25Index, searchBM25 } from "../logic/bm25.js";
15
+ /**
16
+ * Wraps a sql.js prepared statement so it exposes the same .all(), .get(),
17
+ * .run() API as better-sqlite3. A single PreparedStmt is cached per SQL
18
+ * string by DbWrapper and reused across calls — bind() resets the statement
19
+ * so this is safe.
20
+ */
21
+ class PreparedStmt {
22
+ stmt;
23
+ constructor(stmt) {
24
+ this.stmt = stmt;
25
+ }
26
+ all(...params) {
27
+ this.stmt.bind(params.length > 0 ? params : undefined);
28
+ const results = [];
29
+ while (this.stmt.step()) {
30
+ results.push(this.stmt.getAsObject());
31
+ }
32
+ return results;
33
+ }
34
+ get(...params) {
35
+ this.stmt.bind(params.length > 0 ? params : undefined);
36
+ return this.stmt.step() ? this.stmt.getAsObject() : undefined;
37
+ }
38
+ run(...params) {
39
+ this.stmt.run(params.length > 0 ? params : undefined);
40
+ }
41
+ free() {
42
+ this.stmt.free();
43
+ }
44
+ }
45
+ /**
46
+ * Wraps a sql.js Database so it exposes the same .prepare(), .exec(),
47
+ * .run(), .pragma(), .transaction(), .close() API as better-sqlite3.
48
+ *
49
+ * Prepared statements are cached by SQL string so repeated queries reuse
50
+ * the same WASM Statement — otherwise sql.js leaks memory because every
51
+ * prepare() allocates a Statement that's only freed by db.close().
9
52
  */
10
- import Database from "better-sqlite3";
53
+ class DbWrapper {
54
+ db;
55
+ _open;
56
+ stmtCache = new Map();
57
+ constructor() {
58
+ this.db = new SQL.Database();
59
+ this._open = true;
60
+ }
61
+ prepare(sql) {
62
+ const cached = this.stmtCache.get(sql);
63
+ if (cached)
64
+ return cached;
65
+ const stmt = new PreparedStmt(this.db.prepare(sql));
66
+ this.stmtCache.set(sql, stmt);
67
+ return stmt;
68
+ }
69
+ /** Number of cached prepared statements (for tests / observability). */
70
+ preparedStatementCount() {
71
+ return this.stmtCache.size;
72
+ }
73
+ /** Execute one or more SQL statements, ignoring any returned rows. */
74
+ exec(sql) {
75
+ this.db.exec(sql);
76
+ }
77
+ /** Execute a single SQL statement, ignoring any returned rows. */
78
+ run(sql) {
79
+ this.db.run(sql);
80
+ }
81
+ /** Return the rowid of the last INSERT (convenience wrapper). */
82
+ getLastInsertRowid() {
83
+ const rows = this.db.exec("SELECT last_insert_rowid()");
84
+ return rows[0]?.values[0]?.[0] ?? 0;
85
+ }
86
+ /** Set a PRAGMA. */
87
+ pragma(pragmaSql) {
88
+ this.db.run(`PRAGMA ${pragmaSql}`);
89
+ }
90
+ /**
91
+ * Wrap a function so it executes inside a BEGIN / COMMIT / ROLLBACK
92
+ * transaction — identical semantics to better-sqlite3's db.transaction().
93
+ *
94
+ * If ROLLBACK itself throws (e.g. the connection was closed mid-tx), we
95
+ * preserve the original error from fn() as the .cause of the wrapper
96
+ * error so the root cause is never silently lost.
97
+ */
98
+ transaction(fn) {
99
+ return ((...args) => {
100
+ this.db.run("BEGIN");
101
+ try {
102
+ fn(...args);
103
+ this.db.run("COMMIT");
104
+ }
105
+ catch (e) {
106
+ try {
107
+ this.db.run("ROLLBACK");
108
+ }
109
+ catch (rollbackErr) {
110
+ throw new Error(`Transaction failed and ROLLBACK also failed: ${rollbackErr instanceof Error ? rollbackErr.message : String(rollbackErr)}`, { cause: e });
111
+ }
112
+ throw e;
113
+ }
114
+ });
115
+ }
116
+ close() {
117
+ if (this._open) {
118
+ for (const stmt of this.stmtCache.values()) {
119
+ try {
120
+ stmt.free();
121
+ }
122
+ catch { /* ignore — db.close() frees anyway */ }
123
+ }
124
+ this.stmtCache.clear();
125
+ this.db.close();
126
+ this._open = false;
127
+ }
128
+ }
129
+ }
130
+ // ---------------------------------------------------------------------------
131
+ // Module-level sql.js initialisation (top-level await – ESM only, Node ≥20).
132
+ // ---------------------------------------------------------------------------
133
+ const SQL = await initSqlJs();
11
134
  /**
12
135
  * Derive a short descriptive slug from a Nucleus command string.
13
136
  *
@@ -54,47 +177,40 @@ export function commandToSlug(command) {
54
177
  }
55
178
  return slug || "res";
56
179
  }
180
+ // ---------------------------------------------------------------------------
181
+ // SessionDB
182
+ // ---------------------------------------------------------------------------
57
183
  export class SessionDB {
58
184
  db;
59
185
  lastLoadStatus = { truncated: false, storedLines: 0 };
60
186
  /** Tracks usage count per slug base for collision disambiguation */
61
187
  slugCounts = new Map();
188
+ // BM25 index over the currently loaded document, lazily built on the
189
+ // first relevance-ranked search and invalidated whenever the document is
190
+ // replaced. sql.js bundles FTS3/4 but not FTS5's bm25 ranker, so we
191
+ // compute scoring in JS.
192
+ bm25Lines = null;
193
+ bm25Index = null;
62
194
  constructor() {
63
- // Create in-memory database
64
- this.db = new Database(":memory:");
195
+ this.db = new DbWrapper();
65
196
  this.db.pragma("foreign_keys = ON");
66
197
  this.initSchema();
67
198
  }
68
199
  initSchema() {
69
200
  if (!this.db)
70
201
  return;
71
- // Document lines table with FTS5
202
+ // Document lines table with FTS4 (sql.js bundles FTS3/4 but not FTS5)
72
203
  this.db.exec(`
73
204
  CREATE TABLE IF NOT EXISTS document_lines (
74
205
  lineNum INTEGER PRIMARY KEY,
75
206
  content TEXT NOT NULL
76
207
  );
77
208
 
78
- CREATE VIRTUAL TABLE IF NOT EXISTS document_lines_fts USING fts5(
209
+ CREATE VIRTUAL TABLE IF NOT EXISTS document_lines_fts USING fts4(
79
210
  content,
80
- content='document_lines',
81
- content_rowid='lineNum'
211
+ content='document_lines'
82
212
  );
83
213
 
84
- -- Triggers to keep FTS in sync
85
- CREATE TRIGGER IF NOT EXISTS document_lines_ai AFTER INSERT ON document_lines BEGIN
86
- INSERT INTO document_lines_fts(rowid, content) VALUES (new.lineNum, new.content);
87
- END;
88
-
89
- CREATE TRIGGER IF NOT EXISTS document_lines_ad AFTER DELETE ON document_lines BEGIN
90
- INSERT INTO document_lines_fts(document_lines_fts, rowid, content) VALUES('delete', old.lineNum, old.content);
91
- END;
92
-
93
- CREATE TRIGGER IF NOT EXISTS document_lines_au AFTER UPDATE ON document_lines BEGIN
94
- INSERT INTO document_lines_fts(document_lines_fts, rowid, content) VALUES('delete', old.lineNum, old.content);
95
- INSERT INTO document_lines_fts(rowid, content) VALUES (new.lineNum, new.content);
96
- END;
97
-
98
214
  -- Handles registry
99
215
  CREATE TABLE IF NOT EXISTS handles (
100
216
  handle TEXT PRIMARY KEY,
@@ -144,6 +260,10 @@ export class SessionDB {
144
260
  isOpen() {
145
261
  return this.db !== null;
146
262
  }
263
+ /** Number of cached prepared statements (for tests / observability). */
264
+ preparedStatementCount() {
265
+ return this.db?.preparedStatementCount() ?? 0;
266
+ }
147
267
  /**
148
268
  * Get list of tables in database
149
269
  */
@@ -159,9 +279,12 @@ export class SessionDB {
159
279
  return rows.map((r) => r.name);
160
280
  }
161
281
  /**
162
- * Check if FTS5 virtual table exists
282
+ * Check if the FTS virtual table exists.
283
+ *
284
+ * Note: under sql.js the table is FTS4, not FTS5 (sql.js doesn't ship FTS5).
285
+ * The name is kept for backwards-compatibility with existing callers.
163
286
  */
164
- hasFTS5() {
287
+ hasFTSTable() {
165
288
  if (!this.db)
166
289
  return false;
167
290
  const stmt = this.db.prepare(`
@@ -171,20 +294,24 @@ export class SessionDB {
171
294
  const row = stmt.get();
172
295
  return row !== undefined;
173
296
  }
297
+ /** @deprecated Use hasFTSTable() — kept for backwards compatibility. */
298
+ hasFTS5() {
299
+ return this.hasFTSTable();
300
+ }
174
301
  /**
175
- * Load document content into the database
302
+ * Load document content into the database.
303
+ *
304
+ * FTS4 external-content tables need a manual index rebuild after the
305
+ * content table is modified, unlike FTS5 triggers. We run the rebuild
306
+ * inside the same atomic transaction so readers never see a stale index.
176
307
  */
177
308
  loadDocument(content) {
178
309
  if (!this.db) {
179
310
  this.lastLoadStatus = { truncated: false, storedLines: 0 };
180
311
  return 0;
181
312
  }
182
- // Handle empty document
183
- if (!content) {
184
- this.db.exec("DELETE FROM document_lines");
185
- this.lastLoadStatus = { truncated: false, storedLines: 0 };
186
- return 0;
187
- }
313
+ this.bm25Lines = null;
314
+ this.bm25Index = null;
188
315
  const originalLength = content.length;
189
316
  let truncated = false;
190
317
  let reason;
@@ -195,9 +322,13 @@ export class SessionDB {
195
322
  truncated = true;
196
323
  reason = `content size ${originalLength} exceeded MAX_CONTENT_SIZE (${MAX_CONTENT_SIZE} bytes)`;
197
324
  }
198
- // Pre-fix this method silently dropped overflow content. Now we
199
- // surface it via lastLoadStatus so callers and operators can tell
200
- // when a downstream query is operating on incomplete data.
325
+ // Handle empty document
326
+ if (!content) {
327
+ this.db.exec("DELETE FROM document_lines");
328
+ this.db.exec("DELETE FROM document_lines_fts");
329
+ this.lastLoadStatus = { truncated: false, storedLines: 0 };
330
+ return 0;
331
+ }
201
332
  const MAX_LINES = 500_000;
202
333
  const allLines = content.replace(/\r\n/g, "\n").replace(/\r/g, "\n").split("\n", MAX_LINES + 1);
203
334
  let lines = allLines;
@@ -207,14 +338,20 @@ export class SessionDB {
207
338
  reason = `line count exceeded MAX_LINES (${MAX_LINES})`;
208
339
  }
209
340
  const insert = this.db.prepare("INSERT INTO document_lines (lineNum, content) VALUES (?, ?)");
210
- // Wrap DELETE + INSERT in the same transaction for atomicity
341
+ // Wrap content replacement + FTS rebuild in one atomic transaction.
342
+ // FTS4 external-content tables need a manual rebuild via the special
343
+ // 'rebuild' command after the content table is modified.
211
344
  const replaceAll = this.db.transaction((lines) => {
212
345
  this.db.exec("DELETE FROM document_lines");
213
346
  for (let i = 0; i < lines.length; i++) {
214
347
  insert.run(i + 1, lines[i]);
215
348
  }
349
+ // Rebuild FTS index from the content table
350
+ this.db.exec("DELETE FROM document_lines_fts");
351
+ this.db.exec("INSERT INTO document_lines_fts(document_lines_fts) VALUES('rebuild')");
216
352
  });
217
353
  replaceAll(lines);
354
+ this.bm25Lines = lines;
218
355
  this.lastLoadStatus = {
219
356
  truncated,
220
357
  reason,
@@ -228,8 +365,6 @@ export class SessionDB {
228
365
  }
229
366
  /**
230
367
  * Truncation metadata from the most recent loadDocument() call.
231
- * Callers can use this to warn the user when a downstream query
232
- * may be operating on incomplete data.
233
368
  */
234
369
  getLastLoadStatus() {
235
370
  return this.lastLoadStatus;
@@ -268,7 +403,7 @@ export class SessionDB {
268
403
  return row?.count ?? 0;
269
404
  }
270
405
  /**
271
- * Search document using FTS5
406
+ * Search document using FTS (sanitizes user input)
272
407
  */
273
408
  search(query) {
274
409
  if (!this.db)
@@ -276,15 +411,13 @@ export class SessionDB {
276
411
  const MAX_QUERY_LENGTH = 10_000;
277
412
  if (query.length > MAX_QUERY_LENGTH)
278
413
  query = query.slice(0, MAX_QUERY_LENGTH);
279
- // Sanitize FTS5 special characters to prevent query injection
280
- // Strips: quotes, wildcards, grouping, column selectors, boolean ops, prefix tokens
281
414
  const sanitized = query.replace(/['"*()\-|{}:^~\[\]+@/\\]/g, " ").replace(/\b(AND|OR|NOT|NEAR)\b/gi, " ").trim();
282
415
  if (!sanitized)
283
416
  return [];
284
417
  return this.searchRaw(sanitized);
285
418
  }
286
419
  /**
287
- * Search with a raw FTS5 query (for trusted internal callers only)
420
+ * Search with a raw FTS query (for trusted internal callers only)
288
421
  * WARNING: Do not pass user input directly to this method
289
422
  */
290
423
  searchRaw(query) {
@@ -293,7 +426,6 @@ export class SessionDB {
293
426
  if (!query.trim())
294
427
  return [];
295
428
  const MAX_SEARCH_RESULTS = 100_000;
296
- // Use FTS5 MATCH query
297
429
  const stmt = this.db.prepare(`
298
430
  SELECT d.lineNum, d.content
299
431
  FROM document_lines d
@@ -306,43 +438,33 @@ export class SessionDB {
306
438
  return stmt.all(query, MAX_SEARCH_RESULTS);
307
439
  }
308
440
  catch (err) {
309
- console.error("[SessionDB] FTS5 query failed:", err instanceof Error ? err.message : String(err));
441
+ console.error("[SessionDB] FTS query failed:", err instanceof Error ? err.message : String(err));
310
442
  return [];
311
443
  }
312
444
  }
313
445
  /**
314
- * Search with FTS5 BM25 relevance ranking (server-side scoring)
446
+ * Search with BM25 relevance ranking.
447
+ *
448
+ * sql.js bundles FTS3/4 but not FTS5, and FTS4's matchinfo() doesn't give
449
+ * us a real ranker out of the box. We score in JS using the BM25 index
450
+ * that's lazily built from the line cache populated by loadDocument().
315
451
  */
316
452
  searchByRelevance(query) {
317
453
  if (!this.db)
318
454
  return [];
319
455
  if (!query.trim())
320
456
  return [];
321
- const MAX_SEARCH_RESULTS = 100_000;
322
- const stmt = this.db.prepare(`
323
- SELECT d.lineNum, d.content
324
- FROM document_lines_fts f
325
- JOIN document_lines d ON d.lineNum = f.rowid
326
- WHERE document_lines_fts MATCH ?
327
- ORDER BY bm25(document_lines_fts)
328
- LIMIT ?
329
- `);
330
- try {
331
- return stmt.all(query, MAX_SEARCH_RESULTS);
332
- }
333
- catch (err) {
334
- console.error("[SessionDB] FTS5 relevance query failed:", err instanceof Error ? err.message : String(err));
335
- return this.searchRaw(query);
457
+ if (!this.bm25Lines || this.bm25Lines.length === 0)
458
+ return [];
459
+ if (!this.bm25Index) {
460
+ this.bm25Index = buildBM25Index(this.bm25Lines);
336
461
  }
462
+ const MAX_SEARCH_RESULTS = 100_000;
463
+ const ranked = searchBM25(query, this.bm25Lines, this.bm25Index, undefined, MAX_SEARCH_RESULTS);
464
+ return ranked.map((r) => ({ lineNum: r.lineNum, content: r.line }));
337
465
  }
338
466
  /**
339
467
  * Generate a unique handle name for a slug.
340
- *
341
- * Increments the per-slug counter and checks the candidate name against
342
- * existing handles in SQLite. If a cross-slug collision is detected
343
- * (e.g. slug "grep_error" count=2 produces "$grep_error_2" which was
344
- * already taken by slug "grep_error_2" count=1), keeps incrementing
345
- * until a free name is found.
346
468
  */
347
469
  nextUniqueHandle(slug) {
348
470
  const checkExists = this.db.prepare("SELECT 1 FROM handles WHERE handle = ?");
@@ -355,16 +477,10 @@ export class SessionDB {
355
477
  return candidate;
356
478
  }
357
479
  }
358
- // Fallback: should never happen in practice
359
480
  return `$${slug}_${Date.now()}`;
360
481
  }
361
482
  /**
362
483
  * Create a handle for storing data array.
363
- *
364
- * @param data The array payload to store.
365
- * @param command Optional Nucleus command string used to derive a
366
- * descriptive handle name (e.g. `(grep "ERROR")` → `$grep_error`).
367
- * Falls back to `$res`, `$res_2`, … when omitted.
368
484
  */
369
485
  createHandle(data, command) {
370
486
  if (!this.db)
@@ -376,7 +492,6 @@ export class SessionDB {
376
492
  const slug = commandToSlug(command);
377
493
  const handle = this.nextUniqueHandle(slug);
378
494
  const now = Date.now();
379
- // Insert handle metadata and data rows atomically in one transaction
380
495
  const insertHandle = this.db.prepare(`
381
496
  INSERT INTO handles (handle, type, count, created_at)
382
497
  VALUES (?, ?, ?, ?)
@@ -391,7 +506,6 @@ export class SessionDB {
391
506
  insertData.run(handle, i, JSON.stringify(items[i]));
392
507
  }
393
508
  catch {
394
- // Skip non-serializable items (circular refs, BigInt, etc.)
395
509
  insertData.run(handle, i, "null");
396
510
  }
397
511
  }
@@ -401,12 +515,6 @@ export class SessionDB {
401
515
  }
402
516
  /**
403
517
  * Create a memo handle for storing arbitrary context.
404
- * Uses $memo prefix and "memo" type to distinguish from query result handles.
405
- *
406
- * @param data The array payload to store.
407
- * @param label Optional label used to derive a descriptive handle name
408
- * (e.g., "auth architecture" → `$memo_auth_architecture`).
409
- * Falls back to `$memo`, `$memo_2`, … when omitted.
410
518
  */
411
519
  createMemoHandle(data, label) {
412
520
  if (!this.db)
@@ -415,7 +523,6 @@ export class SessionDB {
415
523
  if (data.length > MAX_HANDLE_ITEMS) {
416
524
  data = data.slice(0, MAX_HANDLE_ITEMS);
417
525
  }
418
- // Derive slug from label, with "memo" prefix to stay in the memo namespace
419
526
  let slug = "memo";
420
527
  if (label) {
421
528
  const labelSlug = label
@@ -452,7 +559,6 @@ export class SessionDB {
452
559
  }
453
560
  /**
454
561
  * Delete all non-memo handles (query result handles)
455
- * Preserves memo handles across document reloads
456
562
  */
457
563
  clearQueryHandles() {
458
564
  if (!this.db)
@@ -473,7 +579,7 @@ export class SessionDB {
473
579
  return row ?? null;
474
580
  }
475
581
  /**
476
- * Get a slice of data stored in a handle (avoids loading all rows)
582
+ * Get a slice of data stored in a handle
477
583
  */
478
584
  getHandleDataSlice(handle, limit, offset = 0) {
479
585
  if (!this.db)
@@ -557,15 +663,6 @@ export class SessionDB {
557
663
  }
558
664
  /**
559
665
  * Get the total byte size of a handle's stored JSON rows.
560
- *
561
- * Sums `length(data)` over the handle_data rows in a single SQL query,
562
- * so callers can estimate token costs without re-serializing the whole
563
- * array on the JS side. The data is already JSON-stringified in SQLite
564
- * (see `createHandle`), so this is the authoritative serialized size
565
- * minus the JSON array brackets and commas that would wrap it — close
566
- * enough for a token-cost estimate.
567
- *
568
- * Returns 0 for unknown handles.
569
666
  */
570
667
  getHandleDataByteSize(handle) {
571
668
  if (!this.db)
@@ -590,7 +687,6 @@ export class SessionDB {
590
687
  deleteHandle(handle) {
591
688
  if (!this.db)
592
689
  return;
593
- // Data will be cascade-deleted due to foreign key
594
690
  const stmt = this.db.prepare("DELETE FROM handles WHERE handle = ?");
595
691
  stmt.run(handle);
596
692
  }
@@ -615,7 +711,7 @@ export class SessionDB {
615
711
  stmt.run(turn, bindingsJson, Date.now());
616
712
  }
617
713
  /**
618
- * Get a checkpoint
714
+ * Get a checkpoint timestamp
619
715
  */
620
716
  getCheckpointTimestamp(turn) {
621
717
  if (!this.db)
@@ -714,8 +810,8 @@ export class SessionDB {
714
810
  INSERT INTO symbols (name, kind, startLine, endLine, startCol, endCol, signature, parentSymbolId)
715
811
  VALUES (?, ?, ?, ?, ?, ?, ?, ?)
716
812
  `);
717
- const result = stmt.run(symbol.name, symbol.kind, symbol.startLine, symbol.endLine, symbol.startCol ?? null, symbol.endCol ?? null, symbol.signature ?? null, symbol.parentSymbolId ?? null);
718
- return result.lastInsertRowid;
813
+ stmt.run(symbol.name, symbol.kind, symbol.startLine, symbol.endLine, symbol.startCol ?? null, symbol.endCol ?? null, symbol.signature ?? null, symbol.parentSymbolId ?? null);
814
+ return this.db.getLastInsertRowid();
719
815
  }
720
816
  /**
721
817
  * Get a symbol by ID
@@ -803,12 +899,13 @@ export class SessionDB {
803
899
  return;
804
900
  this.db.exec(`
805
901
  DELETE FROM document_lines;
902
+ DELETE FROM document_lines_fts;
806
903
  DELETE FROM handles;
807
904
  DELETE FROM checkpoints;
808
905
  DELETE FROM symbols;
809
906
  `);
810
- // Don't reset slugCounts — preserves uniqueness and prevents
811
- // handle name collisions with previously issued handles
907
+ this.bm25Lines = null;
908
+ this.bm25Index = null;
812
909
  }
813
910
  /**
814
911
  * Close the database connection
package/dist/persistence/session-db.js.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "matryoshka-rlm",
3
- "version": "0.2.38",
3
+ "version": "0.2.39",
4
4
  "type": "module",
5
5
  "description": "Recursive Language Model - Process documents larger than LLM context windows",
6
6
  "main": "dist/lib.js",
@@ -82,10 +82,9 @@
82
82
  "dependencies": {
83
83
  "@modelcontextprotocol/sdk": "^1.0.0",
84
84
  "@tree-sitter-grammars/tree-sitter-markdown": "^0.3.2",
85
- "@types/better-sqlite3": "^7.6.13",
85
+ "@types/sql.js": "^1.4.11",
86
86
  "@vscode/tree-sitter-wasm": "^0.3.0",
87
87
  "@yogthos/tree-sitter-clojure": "^0.0.14",
88
- "better-sqlite3": "^12.9.0",
89
88
  "graphology": "^0.26.0",
90
89
  "graphology-communities-louvain": "^2.0.2",
91
90
  "graphology-dag": "^0.4.1",
@@ -95,6 +94,7 @@
95
94
  "matryoshka-rlm": "^0.2.5",
96
95
  "ramo": "^0.1.2",
97
96
  "repl-sandbox": "^0.1.1",
97
+ "sql.js": "^1.14.1",
98
98
  "tree-sitter": "^0.22.4",
99
99
  "tree-sitter-css": "^0.21.1",
100
100
  "tree-sitter-elixir": "^0.3.5",